Marr's three levels for embryonic development: Information, dynamical systems, gene networks
D. Brückner, G. Tkadik, PRX Life 4 (2026).

Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges
E. Mascolo, R.E. Körei, N.O. Borst, N.H. Barton, J. Crocker, G. Tkadik, Current Opinion in Genetics and Development 98 (2026).

Token-driven totally asymmetric simple exclusion processes
B. Kavcic, G. Tkadik, Physical Review E 111 (2025).

Deriving a genetic regulatory network from an optimization principle
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkadik, Proceedings of the National Academy of Sciences 122 (2025).

Linking molecular mechanisms to their evolutionary consequences: a primer
R. Grah, C.C. Guet, G. Tkadik, M. Lagator, Genetics 229 (2025).

Token-driven totally asymmetric simple exclusion processes
G. Tkadik, (2025).

Information processing in biochemical networks
G. Tkadik, P.R.T. Wolde, Annual Review of Biophysics 54 (2025) 249–274.

bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction
C.Y. Zhang, A. Rosa, G. Sanguinetti, PRX Life 3 (2025).

Effect propagation in biological networks
N. Ruzickova, Effect Propagation in Biological Networks, Institute of Science and Technology Austria, 2025.

Adaptive processes in biology and culture : Models of evolving vaccine resistance and the record statistics of innovation
S. Rella, Adaptive Processes in Biology and Culturef: Models of Evolving Vaccine Resistance and the Record Statistics of Innovation, Institute of Science and Technology Austria, 2025.

Chromatin enables precise and scalable gene regulation with factors of limited specificity
M.L. Perkins, J. Crocker, G. Tkadik, Proceedings of the National Academy of Sciences 122 (2025).

Learning reshapes the hippocampal representation hierarchy
H.S.C. Chiossi, M. Nardin, G. Tkadik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).

Research data for the publication "Learning reshapes the hippocampal representation hierarchy"
H.S.C. Chiossi, (2025).

Quantifying the carbon footprint of conference travel: The case of NMR meetings
L. Kapoor, N. Ruzickova, P. Zivadinovic, V. Leitner, M.A. Sisak, C.N. Mweka, J.A. Dobbelaere, G. Katsaros, P. Schanda, Magnetic Resonance 6 (2025) 243–256.

Pulsatile basal gene expression as a fitness determinant in bacteria
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkadik, C.C. Guet, Proceedings of the National Academy of Sciences 122 (2025).

Data for "Pulsatile basal gene expression as a fitness determinant in bacteria"
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkadik, C.C. Guet, (2025).

Tipping points of space debris in low earth orbit
K. Nomura, S. Rella, H. Merritt, M. Baltussen, D. Bird, A. Tjuka, D. Falk, International Journal of the Commons 18 (2024).

Information content and optimization of self-organized developmental systems
D. Brückner, G. Tkadik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).

Quantitative omnigenic model discovers interpretable genome-wide associations
N. Ruzickova, M. Hledik, G. Tkadik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).

Complex vaccination strategies prevent the emergence of vaccine resistance
S. Rella, Y.A. Kulikova, A. Minnegalieva, F. Kondrashov, Evolution: International Journal of Organic Evolution 78 (2024) 1722–1738.