Nomura, Keiko, Simon Rella, Haily Merritt, Mathieu Baltussen, Darcy Bird, Annika Tjuka, and Dan Falk. “Tipping Points of Space Debris in Low Earth Orbit.”https://doi.org/10.5334/ijc.1275__International Journal of the Commons. Ubiquity Press, 2024.https://doi.org/10.5334/ijc.1275 .

Hledik, Michal. “Genetic Information and Biological Optimization.”https://doi.org/10.15479/at:ista:15020__Institute of Science and Technology Austria, 2024.https://doi.org/10.15479/at:ista:15020 .

Casillas Perez, Barbara E, Katarina Bodova, Anna V Grasse, Gasper Tkadik, and Sylvia Cremer. “Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants.”https://doi.org/10.1038/s41467-023-38947-y__Nature Communications. Springer Nature, 2023.https://doi.org/10.1038/s41467-023-38947-y .

Lombardi, Fabrizio, Selver Pepic, Oren Shriki, Gasper Tkadik, and Daniele De Martino. “Statistical Modeling of Adaptive Neural Networks Explains Co-Existence of Avalanches and Oscillations in Resting Human Brain.”https://doi.org/10.1038/s43588-023-00410-9__Nature Computational Science. Springer Nature, 2023.https://doi.org/10.1038/s43588-023-00410-9 .

Reinhardt, Manuel, Gasper Tkadik, and Pieter Rein Ten Wolde. “Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories.”https://doi.org/10.1103/PhysRevX.13.041017__Physical Review X. American Physical Society, 2023.https://doi.org/10.1103/PhysRevX.13.041017 .

Nardin, Michele, Jozsef L Csicsvari, Gasper Tkadik, and Cristina Savin. “The Structure of Hippocampal C Interactions Optimizes Spatial Coding across Experience.”https://doi.org/10.1523/JNEUROSCI.0194-23.2023__The Journal of Neuroscience. Society of Neuroscience, 2023.https://doi.org/10.1523/JNEUROSCI.0194-23.2023 .

Scarpetta, Silvia, Niccolò Morrisi, Carlotta Mutti, Nicoletta Azzi, Irene Trippi, Rosario Ciliento, Ilenia Apicella, et al. “Criticality of Neuronal Avalanches in Human Sleep and Their Relationship with Sleep Macro- and Micro-Architecture.”https://doi.org/10.1016/j.isci.2023.107840__IScience. Elsevier, 2023.https://doi.org/10.1016/j.isci.2023.107840 .

Rella, Simon, Y Kulikova, Aygul Minnegalieva, and Fyodor Kondrashov. “Complex Vaccination Strategies Prevent the Emergence of Vaccine Resistance.”https://doi.org/10.1093/eurpub/ckad160.597__In European Journal of Public Health, Vol. 33. Oxford University Press, 2023.https://doi.org/10.1093/eurpub/ckad160.597 .

Lombardi, Fabrizio, Hans J. Herrmann, Liborio Parrino, Dietmar Plenz, Silvia Scarpetta, Anna Elisabetta Vaudano, Lucilla De Arcangelis, and Oren Shriki. “Beyond Pulsed Inhibition: Alpha Oscillations Modulate Attenuation and Amplification of Neural Activity in the Awake Resting State.”https://doi.org/10.1016/j.celrep.2023.113162__Cell Reports. Elsevier, 2023.https://doi.org/10.1016/j.celrep.2023.113162 .

Lombardi, Fabrizio, Hans J. Herrmann, Liborio Parrino, Dietmar Plenz, Silvia Scarpetta, Anna Elisabetta Vaudano, Lucilla de Arcangelis, and Oren Shriki. “Alpha Rhythm Induces Attenuation-Amplification Dynamics in Neural Activity Cascades.”https://doi.org/10.1101/2022.03.03.482657__BioRxiv. Cold Spring Harbor Laboratory, 2022.https://doi.org/10.1101/2022.03.03.482657 .

Ngampruetikorn, Vudtiwat, Vedant Sachdeva, Johanna Torrence, Jan Humplik, David J. Schwab, and Stephanie E. Palmer. “Inferring Couplings in Networks across Order-Disorder Phase Transitions.”https://doi.org/10.1103/PhysRevResearch.4.023240__Physical Review Research. American Physical Society, 2022.https://doi.org/10.1103/PhysRevResearch.4.023240 .

Zoller, Benjamin, Thomas Gregor, and Gasper Tkadik. “Eukaryotic Gene Regulation at Equilibrium, or Non?”https://doi.org/10.1016/j.coisb.2022.100435__Current Opinion in Systems Biology. Elsevier, 2022.https://doi.org/10.1016/j.coisb.2022.100435 .

Zisis, Themistoklis, David Brückner, Tom Brandstätter, Wei Xiong Siow, Joseph d’Alessandro, Angelika M. Vollmar, Chase P. Broedersz, and Stefan Zahler. “Disentangling Cadherin-Mediated Cell-Cell Interactions in Collective Cancer Cell Migration.”https://doi.org/10.1016/j.bpj.2021.12.006__Biophysical Journal. Elsevier, 2022.https://doi.org/10.1016/j.bpj.2021.12.006 .

Lagator, Mato, Srdjan Sarikas, Magdalena Steinrueck, David Toledo-Aparicio, Jonathan P Bollback, Calin C Guet, and Gasper Tkadik. “Predicting Bacterial Promoter Function and Evolution from Random Sequences.”https://doi.org/10.7554/eLife.64543__ELife. eLife Sciences Publications, 2022.https://doi.org/10.7554/eLife.64543 .

Mlynarski, Wiktor F, and Gasper Tkadik. “Efficient Coding Theory of Dynamic Attentional Modulation.”https://doi.org/10.1371/journal.pbio.3001889__PLoS Biology. Public Library of Science, 2022.https://doi.org/10.1371/journal.pbio.3001889 .

Hledik, Michal, Nicholas H Barton, and Gasper Tkadik. “Accumulation and Maintenance of Information in Evolution.”https://doi.org/10.1073/pnas.2123152119__Proceedings of the National Academy of Sciences. Proceedings of the National Academy of Sciences, 2022.https://doi.org/10.1073/pnas.2123152119 .

Bodova, Katarina, Eniko Szep, and Nicholas H Barton. “Dynamic Maximum Entropy Provides Accurate Approximation of Structured Population Dynamics.”https://doi.org/10.1371/journal.pcbi.1009661__PLoS Computational Biology. Public Library of Science, 2021.https://doi.org/10.1371/journal.pcbi.1009661 .

Lombardi, Fabrizio, Selver Pepic, Oren Shriki, Gasper Tkadik, and Daniele De Martino. “Quantifying the Coexistence of Neuronal Oscillations and Avalanches.”https://doi.org/10.48550/ARXIV.2108.06686__arXiv, n.d.https://doi.org/10.48550/ARXIV.2108.06686 .

Kavcic, Bor, and Gasper Tkadik. “Token-Driven Totally Asymmetric Simple Exclusion Process.”https://doi.org/10.48550/arXiv.2112.13558__ArXiv, n.d.https://doi.org/10.48550/arXiv.2112.13558 .

Lombardi, Fabrizio, Oren Shriki, Hans J Herrmann, and Lucilla de Arcangelis. “Long-Range Temporal Correlations in the Broadband Resting State Activity of the Human Brain Revealed by Neuronal Avalanches.”https://doi.org/10.1016/j.neucom.2020.05.126__Neurocomputing. Elsevier, 2021.https://doi.org/10.1016/j.neucom.2020.05.126 .

Tkadik, Gasper, and Thomas Gregor. “The Many Bits of Positional Information.”https://doi.org/10.1242/dev.176065__Development. The Company of Biologists, 2021.https://doi.org/10.1242/dev.176065 .

Mlynarski, Wiktor F, and Ann M. Hermundstad. “Efficient and Adaptive Sensory Codes.”https://doi.org/10.1038/s41593-021-00846-0__Nature Neuroscience. Springer Nature, 2021.https://doi.org/10.1038/s41593-021-00846-0 .

Zisis, Themistoklis, Jan Schwarz, Miriam Balles, Maibritt Kretschmer, Maria Nemethova, Remy P Chait, Robert Hauschild, et al. “Sequential and Switchable Patterning for Studying Cellular Processes under Spatiotemporal Control.”https://doi.org/10.1021/acsami.1c09850__ACS Applied Materials and Interfaces. American Chemical Society, 2021.https://doi.org/10.1021/acsami.1c09850 .

Gabrielaitis, Mantas. “Fast and Accurate Amplitude Demodulation of Wideband Signals.”https://doi.org/10.1109/TSP.2021.3087899__IEEE Transactions on Signal Processing. Institute of Electrical and Electronics Engineers, 2021.https://doi.org/10.1109/TSP.2021.3087899 .

Chalk, Matthew J, Gasper Tkadik, and Olivier Marre. “Inferring the Function Performed by a Recurrent Neural Network.”https://doi.org/10.1371/journal.pone.0248940__PLoS ONE. Public Library of Science, 2021.https://doi.org/10.1371/journal.pone.0248940 .

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “Minimal Biophysical Model of Combined Antibiotic Action.”https://doi.org/10.1371/journal.pcbi.1008529__PLOS Computational Biology. Public Library of Science, 2021.https://doi.org/10.1371/journal.pcbi.1008529 .

Nagy-Staron, Anna A, Kathrin Tomasek, Caroline Caruso Carter, Elisabeth Sonnleitner, Bor Kavcic, Tiago Paixão, and Calin C Guet. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.”https://doi.org/10.7554/elife.65993__ELife. eLife Sciences Publications, 2021.https://doi.org/10.7554/elife.65993 .

Mlynarski, Wiktor F, Michal Hledik, Thomas R Sokolowski, and Gasper Tkadik. “Statistical Analysis and Optimality of Neural Systems.”https://doi.org/10.1016/j.neuron.2021.01.020__Neuron. Cell Press, 2021.https://doi.org/10.1016/j.neuron.2021.01.020 .

Nardin, Michele, Jozsef L Csicsvari, Gasper Tkadik, and Cristina Savin. “The Structure of Hippocampal C Interactions Optimizes Spatial Coding across Experience.”https://doi.org/10.1101/2021.09.28.460602__BioRxiv. Cold Spring Harbor Laboratory, n.d.https://doi.org/10.1101/2021.09.28.460602 .

Lombardi, Fabrizio, Jilin W.J.L. Wang, Xiyun Zhang, and Plamen Ch Ivanov. “Power-Law Correlations and Coupling of Active and Quiet States Underlie a Class of Complex Systems with Self-Organization at Criticality.”https://doi.org/10.1051/epjconf/202023000005__EPJ Web of Conferences. EDP Sciences, 2020.https://doi.org/10.1051/epjconf/202023000005 .

Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann, Shutang Tan, Barbara E Casillas Perez, and Jií Friml. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.”https://doi.org/10.7554/eLife.52067__ELife. eLife Sciences Publications, 2020.https://doi.org/10.7554/eLife.52067 .

Grah, Rok, and Tamar Friedlander. “Distribution of Crosstalk Values.”https://doi.org/10.1371/journal.pcbi.1007642.s003__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s003 .

Grah, Rok, and Tamar Friedlander. “Supporting Information.”https://doi.org/10.1371/journal.pcbi.1007642.s001__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s001 .

Berry, Michael J., and Gasper Tkadik. “Clustering of Neural Activity: A Design Principle for Population Codes.”https://doi.org/10.3389/fncom.2020.00020__Frontiers in Computational Neuroscience. Frontiers, 2020.https://doi.org/10.3389/fncom.2020.00020 .

Maoz, Ori, Gasper Tkadik, Mohamad Saleh Esteki, Roozbeh Kiani, and Elad Schneidman. “Learning Probabilistic Neural Representations with Randomly Connected Circuits.”https://doi.org/10.1073/pnas.1912804117__Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2020.https://doi.org/10.1073/pnas.1912804117 .

Rizzo, Rossella, Xiyun Zhang, Jilin W.J.L. Wang, Fabrizio Lombardi, and Plamen Ch Ivanov. “Network Physiology of Cortico–Muscular Interactions.”https://doi.org/10.3389/fphys.2020.558070__Frontiers in Physiology. Frontiers, 2020.https://doi.org/10.3389/fphys.2020.558070 .

Grah, Rok, Benjamin Zoller, and Gasper Tkadik. “Nonequilibrium Models of Optimal Enhancer Function.”https://doi.org/10.1073/pnas.2006731117__PNAS. National Academy of Sciences, 2020.https://doi.org/10.1073/pnas.2006731117 .

Lombardi, Fabrizio, Manuel Gómez-Extremera, Pedro Bernaola-Galván, Ramalingam Vetrivelan, Clifford B. Saper, Thomas E. Scammell, and Plamen Ch. Ivanov. “Critical Dynamics and Coupling in Bursts of Cortical Rhythms Indicate Non-Homeostatic Mechanism for Sleep-Stage Transitions and Dual Role of VLPO Neurons in Both Sleep and Wake.”https://doi.org/10.1523/jneurosci.1278-19.2019__Journal of Neuroscience. Society for Neuroscience, 2020.https://doi.org/10.1523/jneurosci.1278-19.2019 .

Grah, Rok. “Gene Regulation across Scales – How Biophysical Constraints Shape Evolution.”https://doi.org/10.15479/AT:ISTA:8155__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8155 .

Grah, Rok, Benjamin Zoller, and Gasper Tkadik. “Normative Models of Enhancer Function.”https://doi.org/10.1101/2020.04.08.029405__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.08.029405 .

Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.”https://doi.org/10.1371/journal.pcbi.1007642__PLOS Computational Biology. Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642 .

Grah, Rok, and Tamar Friedlander. “Maximizing Crosstalk.”https://doi.org/10.1371/journal.pcbi.1007642.s002__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s002 .

Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.’”https://doi.org/10.15479/AT:ISTA:8097__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8097 .

Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Minimal Biophysical Model of Combined Antibiotic Action.’”https://doi.org/10.15479/AT:ISTA:8930__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8930 .

Grah, Rok. “Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.15479/AT:ISTA:7383__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:7383 .

Kavcic, Bor. “Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology.”https://doi.org/10.15479/AT:ISTA:8657__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8657 .

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.”https://doi.org/10.1038/s41467-020-17734-z__Nature Communications. Springer Nature, 2020.https://doi.org/10.1038/s41467-020-17734-z .

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “A Minimal Biophysical Model of Combined Antibiotic Action.”https://doi.org/10.1101/2020.04.18.047886__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.18.047886 .

Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gasper Tkadik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.1038/s41559-020-1132-7__Nature Ecology &; Evolution. Springer Nature, 2020.https://doi.org/10.1038/s41559-020-1132-7 .

Bialek, William, Thomas Gregor, and Gasper Tkadik. “Action at a Distance in Transcriptional Regulation.” ArXiv:1912.08579. ArXiv, n.d.

Petkova, Mariela D., Gasper Tkadik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.”https://doi.org/10.1016/j.cell.2019.01.007__Cell. Cell Press, 2019.https://doi.org/10.1016/j.cell.2019.01.007 .

De Martino, Daniele. “Feedback-Induced Self-Oscillations in Large Interacting Systems Subjected to Phase Transitions.”https://doi.org/10.1088/1751-8121/aaf2dd__Journal of Physics A: Mathematical and Theoretical. IOP Publishing, 2019.https://doi.org/10.1088/1751-8121/aaf2dd .

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Temporal Order and Precision of Complex Stress Responses in Individual Bacteria.”https://doi.org/10.15252/msb.20188470__Molecular Systems Biology. Embo Press, 2019.https://doi.org/10.15252/msb.20188470 .

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.”https://doi.org/10.1371/journal.pcbi.1007168__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168 .

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Supporting Text and Results.”https://doi.org/10.1371/journal.pcbi.1007168.s001__Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168.s001 .

Sokolowski, Thomas R, Joris Paijmans, Laurens Bossen, Thomas Miedema, Martijn Wehrens, Nils B. Becker, Kazunari Kaizu, Koichi Takahashi, Marileen Dogterom, and Pieter Rein ten Wolde. “EGFRD in All Dimensions.”https://doi.org/10.1063/1.5064867__The Journal of Chemical Physics. AIP Publishing, 2019.https://doi.org/10.1063/1.5064867 .

Cepeda Humerez, Sarah A, Jakob Ruess, and Gasper Tkadik. “Estimating Information in Time-Varying Signals.”https://doi.org/10.1371/journal.pcbi.1007290__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007290 .

Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.”https://doi.org/10.1073/pnas.1812015116__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019.https://doi.org/10.1073/pnas.1812015116 .

Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.”https://doi.org/10.1039/c8sm01956h__Soft Matter. Royal Society of Chemistry, 2019.https://doi.org/10.1039/c8sm01956h .

Cepeda Humerez, Sarah A. “Estimating Information Flow in Single Cells.”https://doi.org/10.15479/AT:ISTA:6473__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/AT:ISTA:6473 .

Prizak, Roshan. “Coevolution of Transcription Factors and Their Binding Sites in Sequence Space.”https://doi.org/10.15479/at:ista:th6071__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/at:ista:th6071 .

Wang, Jilin W. J. L., Fabrizio Lombardi, Xiyun Zhang, Christelle Anaclet, and Plamen Ch. Ivanov. “Non-Equilibrium Critical Dynamics of Bursts in ;8 and ;4 Rhythms as Fundamental Characteristic of Sleep and Wake Micro-Architecture.”https://doi.org/10.1371/journal.pcbi.1007268__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007268 .

Carballo-Pacheco, Martín, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, and Thierry Mora. “Receptor Crosstalk Improves Concentration Sensing of Multiple Ligands.”https://doi.org/10.1103/PhysRevE.99.022423__Physical Review E. American Physical Society, 2019.https://doi.org/10.1103/PhysRevE.99.022423 .

Hledik, Michal, Thomas R Sokolowski, and Gasper Tkadik. “A Tight Upper Bound on Mutual Information.”https://doi.org/10.1109/ITW44776.2019.8989292__In IEEE Information Theory Workshop, ITW 2019. IEEE, 2019.https://doi.org/10.1109/ITW44776.2019.8989292 .

De Martino, Andrea, and Daniele De Martino. “An Introduction to the Maximum Entropy Approach and Its Application to Inference Problems in Biology.”https://doi.org/10.1016/j.heliyon.2018.e00596__Heliyon. Elsevier, 2018.https://doi.org/10.1016/j.heliyon.2018.e00596 .

Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.”https://doi.org/10.1007/978-1-4939-7792-5_15__Methods in Molecular Biology. Springer, 2018.https://doi.org/10.1007/978-1-4939-7792-5_15 .

Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkadik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.”https://doi.org/10.1073/pnas.1716659115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1716659115 .

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.”https://doi.org/10.1534/genetics.118.300748__Genetics. Genetics Society of America, 2018.https://doi.org/10.1534/genetics.118.300748 .

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Supplemental Material for Bodova et Al., 2018.”https://doi.org/10.25386/genetics.6148304.v1__Genetics Society of America, 2018.https://doi.org/10.25386/genetics.6148304.v1 .

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Probabilistic Models of Individual and Collective Animal Behavior.”https://doi.org/10.1371/journal.pone.0193049__PLoS One. Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049 .

Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.”https://doi.org/10.1038/s41559-017-0424-z__Nature Ecology and Evolution. Springer Nature, 2018.https://doi.org/10.1038/s41559-017-0424-z .

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Implementation of the Inference Method in Matlab.”https://doi.org/10.1371/journal.pone.0193049.s001__Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049.s001 .

Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkadik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.”https://doi.org/10.1103/PhysRevE.98.042410__Physical Review E. American Physical Society, 2018.https://doi.org/10.1103/PhysRevE.98.042410 .

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.”https://doi.org/10.1073/pnas.1711114115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1711114115 .

Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1016/j.physd.2017.10.015__Physica D: Nonlinear Phenomena. Elsevier, 2018.https://doi.org/10.1016/j.physd.2017.10.015 .

Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.”https://doi.org/10.1093/molbev/msy163__Molecular Biology and Evolution. Oxford University Press, 2018.https://doi.org/10.1093/molbev/msy163 .

Botella Soler, Vicente, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.1371/journal.pcbi.1006057__PLoS Computational Biology. Public Library of Science, 2018.https://doi.org/10.1371/journal.pcbi.1006057 .

Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.15479/AT:ISTA:98__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:98 .

De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkadik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.”https://doi.org/10.1038/s41467-018-05417-9__Nature Communications. Springer Nature, 2018.https://doi.org/10.1038/s41467-018-05417-9 .

De Martino, Daniele, and Gasper Tkadik. “Supporting Materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’”https://doi.org/10.15479/AT:ISTA:62__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:62 .

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.1038/s41559-018-0651-y__Nature Ecology and Evolution. Nature Publishing Group, 2018.https://doi.org/10.1038/s41559-018-0651-y .

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.15479/AT:ISTA:108__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:108 .

Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkadik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”https://doi.org/10.1038/s41467-017-01683-1__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-01683-1 .

Der, Ralf, and Georg S Martius. “Dynamical Self Consistency Leads to Behavioral Development and Emergent Social Interactions in Robots.”https://doi.org/10.1109/DEVLRN.2016.7846789__IEEE, 2017.https://doi.org/10.1109/DEVLRN.2016.7846789 .

Der, Ralf, and Georg S Martius. “Self Organized Behavior Generation for Musculoskeletal Robots.”https://doi.org/10.3389/fnbot.2017.00008__Frontiers in Neurorobotics. Frontiers Research Foundation, 2017.https://doi.org/10.3389/fnbot.2017.00008 .

Humplik, Jan, and Gasper Tkadik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.”https://doi.org/10.1371/journal.pcbi.1005763__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005763 .

Harpaz, Roy, Gasper Tkadik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.”https://doi.org/10.1073/pnas.1703817114__PNAS. National Academy of Sciences, 2017.https://doi.org/10.1073/pnas.1703817114 .

Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkadik, and Michael Berry. “Data from: Error-Robust Modes of the Retinal Population Code.”https://doi.org/10.5061/dryad.1f1rc__Dryad, 2017.https://doi.org/10.5061/dryad.1f1rc .

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.”https://doi.org/10.1371/journal.pcbi.1005582__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582 .

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Supplementary Appendix.”https://doi.org/10.1371/journal.pcbi.1005582.s001__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582.s001 .

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Noisy Response to Antibiotic Stress Predicts Subsequent Single Cell Survival in an Acidic Environment.”https://doi.org/10.1016/j.cels.2017.03.001__Cell Systems. Cell Press, 2017.https://doi.org/10.1016/j.cels.2017.03.001 .

Martin Del Campo Sanchez, Abraham, Sarah A Cepeda Humerez, and Caroline Uhler. “Exact Goodness-of-Fit Testing for the Ising Model.”https://doi.org/10.1111/sjos.12251__Scandinavian Journal of Statistics. Wiley-Blackwell, 2017.https://doi.org/10.1111/sjos.12251 .

Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkadik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.”https://doi.org/10.1038/s41467-017-02159-y__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-02159-y .

Levina (Martius), Anna, and Viola Priesemann. “Subsampling Scaling.”https://doi.org/10.1038/ncomms15140__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/ncomms15140 .

Friedlander, Tamar, Roshan Prizak, Nicholas H Barton, and Gasper Tkadik. “Evolution of New Regulatory Functions on Biophysically Realistic Fitness Landscapes.”https://doi.org/10.1038/s41467-017-00238-8__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-00238-8 .

De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.”https://doi.org/10.1103/PhysRevE.95.062419__https://doi.org/10.1103/PhysRevE.95.062419__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.95.062419 .

De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Quantifying the Entropic Cost of Cellular Growth Control.”https://doi.org/10.1103/PhysRevE.96.010401__https://doi.org/10.1103/PhysRevE.96.010401__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.96.010401 .

Zagórski, Marcin P, Yoji Tabata, Nathalie Brandenberg, Matthias Lutolf, Gasper Tkadik, Tobias Bollenbach, James Briscoe, and Anna Kicheva. “Decoding of Position in the Developing Neural Tube from Antiparallel Morphogen Gradients.”https://doi.org/10.1126/science.aam5887__Science. American Association for the Advancement of Science, 2017.https://doi.org/10.1126/science.aam5887 .

Colabrese, Simona, Daniele De Martino, Luca Leuzzi, and Enzo Marinari. “Phase Transitions in Integer Linear Problems.”https://doi.org/10.1088/1742-5468/aa85c3__https://doi.org/10.1088/1742-5468/aa85c3__Journal of Statistical Mechanics: Theory and Experiment. IOPscience, 2017.https://doi.org/10.1088/1742-5468/aa85c3 .

Savin, Cristina, and Gasper Tkadik. “Maximum Entropy Models as a Tool for Building Precise Neural Controls.”https://doi.org/10.1016/j.conb.2017.08.001__Current Opinion in Neurobiology. Elsevier, 2017.https://doi.org/10.1016/j.conb.2017.08.001 .