Inferring couplings in networks across order-disorder phase transitions
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11638
DOI: 10.1103/PhysRevResearch.4.023240
arXiv: 2106.02349

Eukaryotic gene regulation at equilibrium, or non?
B. Zoller, T. Gregor, G. Tkadik, Current Opinion in Systems Biology 31 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/12156
DOI: 10.1016/j.coisb.2022.100435

Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration
T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal 121 (2022) -60.
LibreCat: https://research-explorer.ista.ac.at/record/10530
DOI: 10.1016/j.bpj.2021.12.006
WoS: 000740815400007

Predicting bacterial promoter function and evolution from random sequences
M. Lagator, S. Sarikas, M. Steinrueck, D. Toledo-Aparicio, J.P. Bollback, C.C. Guet, G. Tkadik, ELife 11 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/10736
DOI: 10.7554/eLife.64543
WoS: 000751104400001
PMID: 35080492

Efficient coding theory of dynamic attentional modulation
W.F. Mlynarski, G. Tkadik, PLoS Biology 20 (2022) e3001889.
LibreCat: https://research-explorer.ista.ac.at/record/12332
DOI: 10.1371/journal.pbio.3001889
WoS: 000925192000001

Accumulation and maintenance of information in evolution
M. Hledik, N.H. Barton, G. Tkadik, Proceedings of the National Academy of Sciences 119 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/12081
DOI: 10.1073/pnas.2123152119
WoS: 000889278400014
PMID: 36037343

Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/10535
DOI: 10.1371/journal.pcbi.1009661
PMID: 34851948
arXiv: 2102.03669

Quantifying the coexistence of neuronal oscillations and avalanches
F. Lombardi, S. Pepic, O. Shriki, G. Tkadik, D. De Martino, (n.d.).
LibreCat: https://research-explorer.ista.ac.at/record/10912
DOI: 10.48550/ARXIV.2108.06686
arXiv: 2108.06686

Token-driven totally asymmetric simple exclusion process
B. Kavcic, G. Tkadik, ArXiv (n.d.).
LibreCat: https://research-explorer.ista.ac.at/record/10579
DOI: 10.48550/arXiv.2112.13558
arXiv: 2112.13558

Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches
F. Lombardi, O. Shriki, H.J. Herrmann, L. de Arcangelis, Neurocomputing 461 (2021) 657–666.
LibreCat: https://research-explorer.ista.ac.at/record/7463
DOI: 10.1016/j.neucom.2020.05.126
WoS: 000704086300015

The many bits of positional information
G. Tkadik, T. Gregor, Development 148 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9226
DOI: 10.1242/dev.176065
WoS: 000613906000007
PMID: 33526425

Efficient and adaptive sensory codes
W.F. Mlynarski, A.M. Hermundstad, Nature Neuroscience 24 (2021) 998–1009.
LibreCat: https://research-explorer.ista.ac.at/record/9439
DOI: 10.1038/s41593-021-00846-0
WoS: 000652577300003

Sequential and switchable patterning for studying cellular processes under spatiotemporal control
T. Zisis, J. Schwarz, M. Balles, M. Kretschmer, M. Nemethova, R.P. Chait, R. Hauschild, J. Lange, C.C. Guet, M.K. Sixt, S. Zahler, ACS Applied Materials and Interfaces 13 (2021) 35545–35560.
LibreCat: https://research-explorer.ista.ac.at/record/9822
DOI: 10.1021/acsami.1c09850
WoS: 000683741400026
PMID: 34283577

Fast and accurate amplitude demodulation of wideband signals
M. Gabrielaitis, IEEE Transactions on Signal Processing 69 (2021) 4039–4054.
LibreCat: https://research-explorer.ista.ac.at/record/9828
DOI: 10.1109/TSP.2021.3087899
WoS: 000682123900002
arXiv: 2102.04832

Inferring the function performed by a recurrent neural network
M.J. Chalk, G. Tkadik, O. Marre, PLoS ONE 16 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9362
DOI: 10.1371/journal.pone.0248940
WoS: 000641474900072
PMID: 33857170

Minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkadik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/8997
DOI: 10.1371/journal.pcbi.1008529
WoS: 000608045000010

Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9283
DOI: 10.7554/elife.65993
WoS: 000631050900001

Statistical analysis and optimality of neural systems
W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkadik, Neuron 109 (2021) 1227–1241.e5.
LibreCat: https://research-explorer.ista.ac.at/record/7553
DOI: 10.1016/j.neuron.2021.01.020
WoS: 000637809600006

The structure of hippocampal C interactions optimizes spatial coding across experience
M. Nardin, J.L. Csicsvari, G. Tkadik, C. Savin, BioRxiv (n.d.).
LibreCat: https://research-explorer.ista.ac.at/record/10077
DOI: 10.1101/2021.09.28.460602

Power-law correlations and coupling of active and quiet states underlie a class of complex systems with self-organization at criticality
F. Lombardi, J.W.J.L. Wang, X. Zhang, P.C. Ivanov, EPJ Web of Conferences 230 (2020).
LibreCat: https://research-explorer.ista.ac.at/record/8105
DOI: 10.1051/epjconf/202023000005