Rizzo, Rossella, Xiyun Zhang, Jilin W.J.L. Wang, Fabrizio Lombardi, and Plamen Ch Ivanov. “Network Physiology of Cortico–Muscular Interactions.”https://doi.org/10.3389/fphys.2020.558070__Frontiers in Physiology. Frontiers, 2020.https://doi.org/10.3389/fphys.2020.558070 .
LibreCat: https://research-explorer.ista.ac.at/record/8955
DOI: 10.3389/fphys.2020.558070
WoS: 000596849400001
PMID: 33324233

Grah, Rok, Benjamin Zoller, and Gasper Tkadik. “Nonequilibrium Models of Optimal Enhancer Function.”https://doi.org/10.1073/pnas.2006731117__PNAS. National Academy of Sciences, 2020.https://doi.org/10.1073/pnas.2006731117 .
LibreCat: https://research-explorer.ista.ac.at/record/9000
DOI: 10.1073/pnas.2006731117
WoS: 000600608300015
PMID: 33268497

Lombardi, Fabrizio, Manuel Gómez-Extremera, Pedro Bernaola-Galván, Ramalingam Vetrivelan, Clifford B. Saper, Thomas E. Scammell, and Plamen Ch. Ivanov. “Critical Dynamics and Coupling in Bursts of Cortical Rhythms Indicate Non-Homeostatic Mechanism for Sleep-Stage Transitions and Dual Role of VLPO Neurons in Both Sleep and Wake.”https://doi.org/10.1523/jneurosci.1278-19.2019__Journal of Neuroscience. Society for Neuroscience, 2020.https://doi.org/10.1523/jneurosci.1278-19.2019 .
LibreCat: https://research-explorer.ista.ac.at/record/8084
DOI: 10.1523/jneurosci.1278-19.2019
WoS: 000505167600016
PMID: 31694962

Grah, Rok. “Gene Regulation across Scales – How Biophysical Constraints Shape Evolution.”https://doi.org/10.15479/AT:ISTA:8155__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8155 .
LibreCat: https://research-explorer.ista.ac.at/record/8155
DOI: 10.15479/AT:ISTA:8155

Grah, Rok, Benjamin Zoller, and Gasper Tkadik. “Normative Models of Enhancer Function.”https://doi.org/10.1101/2020.04.08.029405__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.08.029405 .
LibreCat: https://research-explorer.ista.ac.at/record/7675
DOI: 10.1101/2020.04.08.029405

Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.”https://doi.org/10.1371/journal.pcbi.1007642__PLOS Computational Biology. Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642 .
LibreCat: https://research-explorer.ista.ac.at/record/7569
DOI: 10.1371/journal.pcbi.1007642
WoS: 000526725200019

Grah, Rok, and Tamar Friedlander. “Maximizing Crosstalk.”https://doi.org/10.1371/journal.pcbi.1007642.s002__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s002 .
LibreCat: https://research-explorer.ista.ac.at/record/9777
DOI: 10.1371/journal.pcbi.1007642.s002

Kavcic, Bor. “Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology.”https://doi.org/10.15479/AT:ISTA:8657__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8657 .
LibreCat: https://research-explorer.ista.ac.at/record/8657
DOI: 10.15479/AT:ISTA:8657

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.”https://doi.org/10.1038/s41467-020-17734-z__Nature Communications. Springer Nature, 2020.https://doi.org/10.1038/s41467-020-17734-z .
LibreCat: https://research-explorer.ista.ac.at/record/8250
DOI: 10.1038/s41467-020-17734-z
WoS: 000562769300008

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “A Minimal Biophysical Model of Combined Antibiotic Action.”https://doi.org/10.1101/2020.04.18.047886__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.18.047886 .
LibreCat: https://research-explorer.ista.ac.at/record/7673
DOI: 10.1101/2020.04.18.047886

Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gasper Tkadik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.1038/s41559-020-1132-7__Nature Ecology &; Evolution. Springer Nature, 2020.https://doi.org/10.1038/s41559-020-1132-7 .
LibreCat: https://research-explorer.ista.ac.at/record/7652
DOI: 10.1038/s41559-020-1132-7
WoS: 000519008300005

Bialek, William, Thomas Gregor, and Gasper Tkadik. “Action at a Distance in Transcriptional Regulation.” ArXiv:1912.08579. ArXiv, n.d.
LibreCat: https://research-explorer.ista.ac.at/record/7552
arXiv: 1912.08579

Petkova, Mariela D., Gasper Tkadik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.”https://doi.org/10.1016/j.cell.2019.01.007__Cell. Cell Press, 2019.https://doi.org/10.1016/j.cell.2019.01.007 .
LibreCat: https://research-explorer.ista.ac.at/record/5945
DOI: 10.1016/j.cell.2019.01.007
WoS: 000457969200015
PMID: 30712870

De Martino, Daniele. “Feedback-Induced Self-Oscillations in Large Interacting Systems Subjected to Phase Transitions.”https://doi.org/10.1088/1751-8121/aaf2dd__Journal of Physics A: Mathematical and Theoretical. IOP Publishing, 2019.https://doi.org/10.1088/1751-8121/aaf2dd .
LibreCat: https://research-explorer.ista.ac.at/record/6049
DOI: 10.1088/1751-8121/aaf2dd
WoS: 000455379500001

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Temporal Order and Precision of Complex Stress Responses in Individual Bacteria.”https://doi.org/10.15252/msb.20188470__Molecular Systems Biology. Embo Press, 2019.https://doi.org/10.15252/msb.20188470 .
LibreCat: https://research-explorer.ista.ac.at/record/6046
DOI: 10.15252/msb.20188470
WoS: 000459628300003
PMID: 30765425

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.”https://doi.org/10.1371/journal.pcbi.1007168__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168 .
LibreCat: https://research-explorer.ista.ac.at/record/6784
DOI: 10.1371/journal.pcbi.1007168
WoS: 000481577700032

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Supporting Text and Results.”https://doi.org/10.1371/journal.pcbi.1007168.s001__Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9786
DOI: 10.1371/journal.pcbi.1007168.s001

Sokolowski, Thomas R, Joris Paijmans, Laurens Bossen, Thomas Miedema, Martijn Wehrens, Nils B. Becker, Kazunari Kaizu, Koichi Takahashi, Marileen Dogterom, and Pieter Rein ten Wolde. “EGFRD in All Dimensions.”https://doi.org/10.1063/1.5064867__The Journal of Chemical Physics. AIP Publishing, 2019.https://doi.org/10.1063/1.5064867 .
LibreCat: https://research-explorer.ista.ac.at/record/7422
DOI: 10.1063/1.5064867
WoS: 000458109300009
arXiv: 1708.09364

Cepeda Humerez, Sarah A, Jakob Ruess, and Gasper Tkadik. “Estimating Information in Time-Varying Signals.”https://doi.org/10.1371/journal.pcbi.1007290__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007290 .
LibreCat: https://research-explorer.ista.ac.at/record/6900
DOI: 10.1371/journal.pcbi.1007290
WoS: 000489741800021
PMID: 31479447

Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.”https://doi.org/10.1073/pnas.1812015116__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019.https://doi.org/10.1073/pnas.1812015116 .
LibreCat: https://research-explorer.ista.ac.at/record/196
DOI: 10.1073/pnas.1812015116
WoS: 000459074400013
PMID:  30728300
arXiv: 1806.10823

Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.”https://doi.org/10.1039/c8sm01956h__Soft Matter. Royal Society of Chemistry, 2019.https://doi.org/10.1039/c8sm01956h .
LibreCat: https://research-explorer.ista.ac.at/record/5817
DOI: 10.1039/c8sm01956h
WoS: 000457329700003
PMID: 30629082

Cepeda Humerez, Sarah A. “Estimating Information Flow in Single Cells.”https://doi.org/10.15479/AT:ISTA:6473__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/AT:ISTA:6473 .
LibreCat: https://research-explorer.ista.ac.at/record/6473
DOI: 10.15479/AT:ISTA:6473

Prizak, Roshan. “Coevolution of Transcription Factors and Their Binding Sites in Sequence Space.”https://doi.org/10.15479/at:ista:th6071__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/at:ista:th6071 .
LibreCat: https://research-explorer.ista.ac.at/record/6071
DOI: 10.15479/at:ista:th6071

Wang, Jilin W. J. L., Fabrizio Lombardi, Xiyun Zhang, Christelle Anaclet, and Plamen Ch. Ivanov. “Non-Equilibrium Critical Dynamics of Bursts in ;8 and ;4 Rhythms as Fundamental Characteristic of Sleep and Wake Micro-Architecture.”https://doi.org/10.1371/journal.pcbi.1007268__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007268 .
LibreCat: https://research-explorer.ista.ac.at/record/7103
DOI: 10.1371/journal.pcbi.1007268
WoS: 000500976100014
PMID: 31725712

Carballo-Pacheco, Martín, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, and Thierry Mora. “Receptor Crosstalk Improves Concentration Sensing of Multiple Ligands.”https://doi.org/10.1103/PhysRevE.99.022423__Physical Review E. American Physical Society, 2019.https://doi.org/10.1103/PhysRevE.99.022423 .
LibreCat: https://research-explorer.ista.ac.at/record/6090
DOI: 10.1103/PhysRevE.99.022423
WoS: 000459916500007

Hledik, Michal, Thomas R Sokolowski, and Gasper Tkadik. “A Tight Upper Bound on Mutual Information.”https://doi.org/10.1109/ITW44776.2019.8989292__In IEEE Information Theory Workshop, ITW 2019. IEEE, 2019.https://doi.org/10.1109/ITW44776.2019.8989292 .
LibreCat: https://research-explorer.ista.ac.at/record/7606
DOI: 10.1109/ITW44776.2019.8989292
WoS: 000540384500015
arXiv: 1812.01475

De Martino, Andrea, and Daniele De Martino. “An Introduction to the Maximum Entropy Approach and Its Application to Inference Problems in Biology.”https://doi.org/10.1016/j.heliyon.2018.e00596__Heliyon. Elsevier, 2018.https://doi.org/10.1016/j.heliyon.2018.e00596 .
LibreCat: https://research-explorer.ista.ac.at/record/306
DOI: 10.1016/j.heliyon.2018.e00596

Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.”https://doi.org/10.1007/978-1-4939-7792-5_15__Methods in Molecular Biology. Springer, 2018.https://doi.org/10.1007/978-1-4939-7792-5_15 .
LibreCat: https://research-explorer.ista.ac.at/record/305
DOI: 10.1007/978-1-4939-7792-5_15

Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkadik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.”https://doi.org/10.1073/pnas.1716659115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1716659115 .
LibreCat: https://research-explorer.ista.ac.at/record/281
DOI: 10.1073/pnas.1716659115
WoS: 000434114900071
PMID: 29784812

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.”https://doi.org/10.1534/genetics.118.300748__Genetics. Genetics Society of America, 2018.https://doi.org/10.1534/genetics.118.300748 .
LibreCat: https://research-explorer.ista.ac.at/record/316
DOI: 10.1534/genetics.118.300748
WoS: 000437171700017

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Supplemental Material for Bodova et Al., 2018.”https://doi.org/10.25386/genetics.6148304.v1__Genetics Society of America, 2018.https://doi.org/10.25386/genetics.6148304.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9813
DOI: 10.25386/genetics.6148304.v1

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Probabilistic Models of Individual and Collective Animal Behavior.”https://doi.org/10.1371/journal.pone.0193049__PLoS One. Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049 .
LibreCat: https://research-explorer.ista.ac.at/record/406
DOI: 10.1371/journal.pone.0193049
WoS: 000426896800032

Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.”https://doi.org/10.1038/s41559-017-0424-z__Nature Ecology and Evolution. Springer Nature, 2018.https://doi.org/10.1038/s41559-017-0424-z .
LibreCat: https://research-explorer.ista.ac.at/record/457
DOI: 10.1038/s41559-017-0424-z
WoS: 000426516400027

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Implementation of the Inference Method in Matlab.”https://doi.org/10.1371/journal.pone.0193049.s001__Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9831
DOI: 10.1371/journal.pone.0193049.s001

Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkadik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.”https://doi.org/10.1103/PhysRevE.98.042410__Physical Review E. American Physical Society, 2018.https://doi.org/10.1103/PhysRevE.98.042410 .
LibreCat: https://research-explorer.ista.ac.at/record/31
DOI: 10.1103/PhysRevE.98.042410
WoS: 000447486100004

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.”https://doi.org/10.1073/pnas.1711114115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1711114115 .
LibreCat: https://research-explorer.ista.ac.at/record/543
DOI: 10.1073/pnas.1711114115
WoS: 000419128700049

Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1016/j.physd.2017.10.015__Physica D: Nonlinear Phenomena. Elsevier, 2018.https://doi.org/10.1016/j.physd.2017.10.015 .
LibreCat: https://research-explorer.ista.ac.at/record/607
DOI: 10.1016/j.physd.2017.10.015
WoS: 000437962900012
arXiv: 1704.08757

Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.”https://doi.org/10.1093/molbev/msy163__Molecular Biology and Evolution. Oxford University Press, 2018.https://doi.org/10.1093/molbev/msy163 .
LibreCat: https://research-explorer.ista.ac.at/record/19
DOI: 10.1093/molbev/msy163
WoS: 000452567200006
PMID: 30169679

Botella Soler, Vicente, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.1371/journal.pcbi.1006057__PLoS Computational Biology. Public Library of Science, 2018.https://doi.org/10.1371/journal.pcbi.1006057 .
LibreCat: https://research-explorer.ista.ac.at/record/292
DOI: 10.1371/journal.pcbi.1006057
WoS: 000434012100002

De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkadik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.”https://doi.org/10.1038/s41467-018-05417-9__Nature Communications. Springer Nature, 2018.https://doi.org/10.1038/s41467-018-05417-9 .
LibreCat: https://research-explorer.ista.ac.at/record/161
DOI: 10.1038/s41467-018-05417-9
WoS: 000440149300021

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.1038/s41559-018-0651-y__Nature Ecology and Evolution. Nature Publishing Group, 2018.https://doi.org/10.1038/s41559-018-0651-y .
LibreCat: https://research-explorer.ista.ac.at/record/67
DOI: 10.1038/s41559-018-0651-y
WoS: 000447947600021

Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkadik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”https://doi.org/10.1038/s41467-017-01683-1__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-01683-1 .
LibreCat: https://research-explorer.ista.ac.at/record/613
DOI: 10.1038/s41467-017-01683-1

Der, Ralf, and Georg S Martius. “Dynamical Self Consistency Leads to Behavioral Development and Emergent Social Interactions in Robots.”https://doi.org/10.1109/DEVLRN.2016.7846789__IEEE, 2017.https://doi.org/10.1109/DEVLRN.2016.7846789 .
LibreCat: https://research-explorer.ista.ac.at/record/652
DOI: 10.1109/DEVLRN.2016.7846789

Der, Ralf, and Georg S Martius. “Self Organized Behavior Generation for Musculoskeletal Robots.”https://doi.org/10.3389/fnbot.2017.00008__Frontiers in Neurorobotics. Frontiers Research Foundation, 2017.https://doi.org/10.3389/fnbot.2017.00008 .
LibreCat: https://research-explorer.ista.ac.at/record/658
DOI: 10.3389/fnbot.2017.00008

Humplik, Jan, and Gasper Tkadik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.”https://doi.org/10.1371/journal.pcbi.1005763__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005763 .
LibreCat: https://research-explorer.ista.ac.at/record/720
DOI: 10.1371/journal.pcbi.1005763

Harpaz, Roy, Gasper Tkadik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.”https://doi.org/10.1073/pnas.1703817114__PNAS. National Academy of Sciences, 2017.https://doi.org/10.1073/pnas.1703817114 .
LibreCat: https://research-explorer.ista.ac.at/record/725
DOI: 10.1073/pnas.1703817114
PMID: 28874581

Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkadik, and Michael Berry. “Data from: Error-Robust Modes of the Retinal Population Code.”https://doi.org/10.5061/dryad.1f1rc__Dryad, 2017.https://doi.org/10.5061/dryad.1f1rc .
LibreCat: https://research-explorer.ista.ac.at/record/9709
DOI: 10.5061/dryad.1f1rc

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.”https://doi.org/10.1371/journal.pcbi.1005582__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582 .
LibreCat: https://research-explorer.ista.ac.at/record/680
DOI: 10.1371/journal.pcbi.1005582

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Supplementary Appendix.”https://doi.org/10.1371/journal.pcbi.1005582.s001__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9855
DOI: 10.1371/journal.pcbi.1005582.s001

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Noisy Response to Antibiotic Stress Predicts Subsequent Single Cell Survival in an Acidic Environment.”https://doi.org/10.1016/j.cels.2017.03.001__Cell Systems. Cell Press, 2017.https://doi.org/10.1016/j.cels.2017.03.001 .
LibreCat: https://research-explorer.ista.ac.at/record/666
DOI: 10.1016/j.cels.2017.03.001

Martin Del Campo Sanchez, Abraham, Sarah A Cepeda Humerez, and Caroline Uhler. “Exact Goodness-of-Fit Testing for the Ising Model.”https://doi.org/10.1111/sjos.12251__Scandinavian Journal of Statistics. Wiley-Blackwell, 2017.https://doi.org/10.1111/sjos.12251 .
LibreCat: https://research-explorer.ista.ac.at/record/2016
DOI: 10.1111/sjos.12251
WoS: 000400985000001
arXiv: 1410.1242

Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkadik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.”https://doi.org/10.1038/s41467-017-02159-y__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-02159-y .
LibreCat: https://research-explorer.ista.ac.at/record/1104
DOI: 10.1038/s41467-017-02159-y
WoS: 000417241200004

Levina (Martius), Anna, and Viola Priesemann. “Subsampling Scaling.”https://doi.org/10.1038/ncomms15140__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/ncomms15140 .
LibreCat: https://research-explorer.ista.ac.at/record/993
DOI: 10.1038/ncomms15140
WoS: 000400560700001

Friedlander, Tamar, Roshan Prizak, Nicholas H Barton, and Gasper Tkadik. “Evolution of New Regulatory Functions on Biophysically Realistic Fitness Landscapes.”https://doi.org/10.1038/s41467-017-00238-8__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-00238-8 .
LibreCat: https://research-explorer.ista.ac.at/record/955
DOI: 10.1038/s41467-017-00238-8
WoS: 000407198800005

De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.”https://doi.org/10.1103/PhysRevE.95.062419__https://doi.org/10.1103/PhysRevE.95.062419__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.95.062419 .
LibreCat: https://research-explorer.ista.ac.at/record/959
DOI: 10.1103/PhysRevE.95.062419
WoS: 000404546400004

De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Quantifying the Entropic Cost of Cellular Growth Control.”https://doi.org/10.1103/PhysRevE.96.010401__https://doi.org/10.1103/PhysRevE.96.010401__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.96.010401 .
LibreCat: https://research-explorer.ista.ac.at/record/947
DOI: 10.1103/PhysRevE.96.010401
WoS: 000405194200002

Zagórski, Marcin P, Yoji Tabata, Nathalie Brandenberg, Matthias Lutolf, Gasper Tkadik, Tobias Bollenbach, James Briscoe, and Anna Kicheva. “Decoding of Position in the Developing Neural Tube from Antiparallel Morphogen Gradients.”https://doi.org/10.1126/science.aam5887__Science. American Association for the Advancement of Science, 2017.https://doi.org/10.1126/science.aam5887 .
LibreCat: https://research-explorer.ista.ac.at/record/943
DOI: 10.1126/science.aam5887
WoS: 000404351500036
PMID: 28663499

Colabrese, Simona, Daniele De Martino, Luca Leuzzi, and Enzo Marinari. “Phase Transitions in Integer Linear Problems.”https://doi.org/10.1088/1742-5468/aa85c3__https://doi.org/10.1088/1742-5468/aa85c3__Journal of Statistical Mechanics: Theory and Experiment. IOPscience, 2017.https://doi.org/10.1088/1742-5468/aa85c3 .
LibreCat: https://research-explorer.ista.ac.at/record/823
DOI: 10.1088/1742-5468/aa85c3
WoS: 000411842900001

Savin, Cristina, and Gasper Tkadik. “Maximum Entropy Models as a Tool for Building Precise Neural Controls.”https://doi.org/10.1016/j.conb.2017.08.001__Current Opinion in Neurobiology. Elsevier, 2017.https://doi.org/10.1016/j.conb.2017.08.001 .
LibreCat: https://research-explorer.ista.ac.at/record/730
DOI: 10.1016/j.conb.2017.08.001
WoS: 000416196400016

De Martino, Daniele. “Maximum Entropy Modeling of Metabolic Networks by Constraining Growth-Rate Moments Predicts Coexistence of Phenotypes.”https://doi.org/10.1103/PhysRevE.96.060401__Physical Review E. American Physical Society, 2017.https://doi.org/10.1103/PhysRevE.96.060401 .
LibreCat: https://research-explorer.ista.ac.at/record/548
DOI: 10.1103/PhysRevE.96.060401

Lang, Moritz, and Eduardo Sontag. “Zeros of Nonlinear Systems with Input Invariances.”https://doi.org/10.1016/j.automatica.2017.03.030__Automatica. International Federation of Automatic Control, 2017.https://doi.org/10.1016/j.automatica.2017.03.030 .
LibreCat: https://research-explorer.ista.ac.at/record/1007
DOI: 10.1016/j.automatica.2017.03.030
WoS: 000403513900006

Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkadik, and Calin C Guet. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.”https://doi.org/10.1126/science.aaf4762__Science. American Association for the Advancement of Science, 2017.https://doi.org/10.1126/science.aaf4762 .
LibreCat: https://research-explorer.ista.ac.at/record/665
DOI: 10.1126/science.aaf4762

Barone, Vanessa, Moritz Lang, Gabriel Krens, Saurabh Pradhan, Shayan Shamipour, Keisuke Sako, Mateusz K Sikora, Calin C Guet, and Carl-Philipp J Heisenberg. “An Effective Feedback Loop between Cell-Cell Contact Duration and Morphogen Signaling Determines Cell Fate.”https://doi.org/10.1016/j.devcel.2017.09.014__Developmental Cell. Cell Press, 2017.https://doi.org/10.1016/j.devcel.2017.09.014 .
LibreCat: https://research-explorer.ista.ac.at/record/735
DOI: 10.1016/j.devcel.2017.09.014
WoS: 000413443700011

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Relevant Sparse Codes with Variational Information Bottleneck,” 29:1965–73. Neural Information Processing Systems, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1082

Savin, Cristina, and Gasper Tkadik. “Estimating Nonlinear Neural Response Functions Using GP Priors and Kronecker Methods,” 29:3610–18. Neural Information Processing Systems, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1105

Lang, Moritz, and Jörg Stelling. “Modular Parameter Identification of Biomolecular Networks.”https://doi.org/10.1137/15M103306X__SIAM Journal on Scientific Computing. Society for Industrial and Applied Mathematics , 2016.https://doi.org/10.1137/15M103306X .
LibreCat: https://research-explorer.ista.ac.at/record/1170
DOI: 10.1137/15M103306X

Tkadik, Gasper. “Understanding Regulatory Networks Requires More than Computing a Multitude of Graph Statistics: Comment on &;quot;Drivers of Structural Features in Gene Regulatory Networks: From Biophysical Constraints to Biological Function&;quot; by O. C. Martin et Al.”https://doi.org/10.1016/j.plrev.2016.06.005__Physics of Life Reviews. Elsevier, 2016.https://doi.org/10.1016/j.plrev.2016.06.005 .
LibreCat: https://research-explorer.ista.ac.at/record/1171
DOI: 10.1016/j.plrev.2016.06.005

De Martino, Daniele, and Davide Masoero. “Asymptotic Analysis of Noisy Fitness Maximization, Applied to Metabolism &;amp; Growth.”https://doi.org/10.1088/1742-5468/aa4e8f__https://doi.org/10.1088/1742-5468/aa4e8f__Journal of Statistical Mechanics: Theory and Experiment. IOPscience, 2016.https://doi.org/10.1088/1742-5468/aa4e8f .
LibreCat: https://research-explorer.ista.ac.at/record/1188
DOI: 10.1088/1742-5468/aa4e8f

Hu, Fang, Lavanya Rishishwar, Ambily Sivadas, Gabriel Mitchell, Jordan King, Timothy Murphy, Janet Gilsdorf, Leonard Mayer, and Xin Wang. “Comparative Genomic Analysis of Haemophilus Haemolyticus and Nontypeable Haemophilus Influenzae and a New Testing Scheme for Their Discrimination.”https://doi.org/10.1128/JCM.01511-16__Journal of Clinical Microbiology. American Society for Microbiology, 2016.https://doi.org/10.1128/JCM.01511-16 .
LibreCat: https://research-explorer.ista.ac.at/record/1203
DOI: 10.1128/JCM.01511-16

Martius, Georg S, Raphael Hostettler, Alois Knoll, and Ralf Der. “Compliant Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic Arm,”https://doi.org/10.1109/IROS.2016.7759138__Vol. 2016–November. IEEE, 2016.https://doi.org/10.1109/IROS.2016.7759138 .
LibreCat: https://research-explorer.ista.ac.at/record/1214
DOI: 10.1109/IROS.2016.7759138

Miki, Gregor, Alex Stoll, Joe Bevirt, Rok Grah, and Mark Moore. “Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency,”https://doi.org/10.2514/6.2016-3764__1–19. AIAA, 2016.https://doi.org/10.2514/6.2016-3764 .
LibreCat: https://research-explorer.ista.ac.at/record/1220
DOI: 10.2514/6.2016-3764

Sokolowski, Thomas R, Aleksandra Walczak, William Bialek, and Gasper Tkadik. “Extending the Dynamic Range of Transcription Factor Action by Translational Regulation.”https://doi.org/10.1103/PhysRevE.93.022404__Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2016.https://doi.org/10.1103/PhysRevE.93.022404 .
LibreCat: https://research-explorer.ista.ac.at/record/1242
DOI: 10.1103/PhysRevE.93.022404

Recouvreux, Pierre, Thomas R Sokolowski, Aristea Grammoustianou, Pieter Tenwolde, and Marileen Dogterom. “Chimera Proteins with Affinity for Membranes and Microtubule Tips Polarize in the Membrane of Fission Yeast Cells.”https://doi.org/10.1073/pnas.1419248113__PNAS. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1419248113 .
LibreCat: https://research-explorer.ista.ac.at/record/1244
DOI: 10.1073/pnas.1419248113

Tkadik, Gasper, and William Bialek. “Information Processing in Living Systems.”https://doi.org/10.1146/annurev-conmatphys-031214-014803__Annual Review of Condensed Matter Physics. Annual Reviews, 2016.https://doi.org/10.1146/annurev-conmatphys-031214-014803 .
LibreCat: https://research-explorer.ista.ac.at/record/1248
DOI: 10.1146/annurev-conmatphys-031214-014803

De Martino, Daniele. “The Dual of the Space of Interactions in Neural Network Models.”https://doi.org/10.1142/S0129183116500674__International Journal of Modern Physics C. World Scientific Publishing, 2016.https://doi.org/10.1142/S0129183116500674 .
LibreCat: https://research-explorer.ista.ac.at/record/1260
DOI: 10.1142/S0129183116500674
arXiv: 1505.02963

Chalk, Matthew J, Boris Gutkin, and Sophie Denève. “Neural Oscillations as a Signature of Efficient Coding in the Presence of Synaptic Delays.”https://doi.org/10.7554/eLife.13824__ELife. eLife Sciences Publications, 2016.https://doi.org/10.7554/eLife.13824 .
LibreCat: https://research-explorer.ista.ac.at/record/1266
DOI: 10.7554/eLife.13824

Stone, Laura, Michael Baym, Tami Lieberman, Remy P Chait, Jon Clardy, and Roy Kishony. “Compounds That Select against the Tetracycline-Resistance Efflux Pump.”https://doi.org/10.1038/nchembio.2176__Nature Chemical Biology. Nature Publishing Group, 2016.https://doi.org/10.1038/nchembio.2176 .
LibreCat: https://research-explorer.ista.ac.at/record/1290
DOI: 10.1038/nchembio.2176

Lang, Moritz, and Eduardo Sontag. “Scale-Invariant Systems Realize Nonlinear Differential Operators,”https://doi.org/10.1109/ACC.2016.7526722__Vol. 2016–July. IEEE, 2016.https://doi.org/10.1109/ACC.2016.7526722 .
LibreCat: https://research-explorer.ista.ac.at/record/1320
DOI: 10.1109/ACC.2016.7526722

Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.”https://doi.org/10.1038/ncomms10333__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms10333 .
LibreCat: https://research-explorer.ista.ac.at/record/1332
DOI: 10.1038/ncomms10333

Baym, Michael, Tami Lieberman, Eric Kelsic, Remy P Chait, Rotem Gross, Idan Yelin, and Roy Kishony. “Spatiotemporal Microbial Evolution on Antibiotic Landscapes.”https://doi.org/10.1126/science.aag0822__Science. American Association for the Advancement of Science, 2016.https://doi.org/10.1126/science.aag0822 .
LibreCat: https://research-explorer.ista.ac.at/record/1342
DOI: 10.1126/science.aag0822

De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Growth against Entropy in Bacterial Metabolism: The Phenotypic Trade-off behind Empirical Growth Rate Distributions in E. Coli.”https://doi.org/10.1088/1478-3975/13/3/036005__Physical Biology. IOP Publishing Ltd., 2016.https://doi.org/10.1088/1478-3975/13/3/036005 .
LibreCat: https://research-explorer.ista.ac.at/record/1394
DOI: 10.1088/1478-3975/13/3/036005

Bodova, Katarina, Gasper Tkadik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1534/genetics.115.184127__Genetics. Genetics Society of America, 2016.https://doi.org/10.1534/genetics.115.184127 .
LibreCat: https://research-explorer.ista.ac.at/record/1420
DOI: 10.1534/genetics.115.184127
arXiv: 1510.08344

De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of E. Coli from the Energy Balance Analysis.”https://doi.org/10.1088/1478-3975/13/1/016003__Physical Biology. IOP Publishing Ltd., 2016.https://doi.org/10.1088/1478-3975/13/1/016003 .
LibreCat: https://research-explorer.ista.ac.at/record/1485
DOI: 10.1088/1478-3975/13/1/016003

Schilling, Christian, Sergiy Bogomolov, Thomas A Henzinger, Andreas Podelski, and Jakob Ruess. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.”https://doi.org/10.1016/j.biosystems.2016.07.005__Biosystems. Elsevier, 2016.https://doi.org/10.1016/j.biosystems.2016.07.005 .
LibreCat: https://research-explorer.ista.ac.at/record/1148
DOI: 10.1016/j.biosystems.2016.07.005

Martius, Georg S, Rafael Hostettler, Alois Knoll, and Ralf Der. “Self-Organized Control of an Tendon Driven Arm by Differential Extrinsic Plasticity.”https://doi.org/10.7551/978-0-262-33936-0-ch029__In Proceedings of the Artificial Life Conference 2016, 28:142–43. MIT Press, 2016.https://doi.org/10.7551/978-0-262-33936-0-ch029 .
LibreCat: https://research-explorer.ista.ac.at/record/8094
DOI: 10.7551/978-0-262-33936-0-ch029

Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkadik, and Michael Berry. “Error-Robust Modes of the Retinal Population Code.”https://doi.org/10.1371/journal.pcbi.1005148__PLoS Computational Biology. Public Library of Science, 2016.https://doi.org/10.1371/journal.pcbi.1005148 .
LibreCat: https://research-explorer.ista.ac.at/record/1197
DOI: 10.1371/journal.pcbi.1005148

Monk, Travis, Cristina Savin, and Jörg Lücke. “Neurons Equipped with Intrinsic Plasticity Learn Stimulus Intensity Statistics,” 29:4285–93. Neural Information Processing Systems, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/948

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.”https://doi.org/10.1371/journal.pone.0163628__PLoS One. Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628 .
LibreCat: https://research-explorer.ista.ac.at/record/1270
DOI: 10.1371/journal.pone.0163628

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Computation of Positional Information in an Ising Model.”https://doi.org/10.1371/journal.pone.0163628.s002__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s002 .
LibreCat: https://research-explorer.ista.ac.at/record/9870
DOI: 10.1371/journal.pone.0163628.s002

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Error Bound on an Estimator of Position.”https://doi.org/10.1371/journal.pone.0163628.s001__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9869
DOI: 10.1371/journal.pone.0163628.s001

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Computation of Positional Information in a Discrete Morphogen Field.”https://doi.org/10.1371/journal.pone.0163628.s003__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s003 .
LibreCat: https://research-explorer.ista.ac.at/record/9871
DOI: 10.1371/journal.pone.0163628.s003

Rieckh, Georg. “Studying the Complexities of Transcriptional Regulation.” Institute of Science and Technology Austria, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1128

Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gasper Tkadik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.”https://doi.org/10.1038/ncomms12307__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms12307 .
LibreCat: https://research-explorer.ista.ac.at/record/1358
DOI: 10.1038/ncomms12307

Parise, Francesca, John Lygeros, and Jakob Ruess. “Bayesian Inference for Stochastic Individual-Based Models of Ecological Systems: A Pest Control Simulation Study.”https://doi.org/10.3389/fenvs.2015.00042__Frontiers in Environmental Science. Frontiers, 2015.https://doi.org/10.3389/fenvs.2015.00042 .
LibreCat: https://research-explorer.ista.ac.at/record/10794
DOI: 10.3389/fenvs.2015.00042

Ruess, Jakob. “Minimal Moment Equations for Stochastic Models of Biochemical Reaction Networks with Partially Finite State Space.”https://doi.org/10.1063/1.4937937__Journal of Chemical Physics. American Institute of Physics, 2015.https://doi.org/10.1063/1.4937937 .
LibreCat: https://research-explorer.ista.ac.at/record/1539
DOI: 10.1063/1.4937937

Ruess, Jakob, Francesca Parise, Andreas Milias Argeitis, Mustafa Khammash, and John Lygeros. “Iterative Experiment Design Guides the Characterization of a Light-Inducible Gene Expression Circuit.”https://doi.org/10.1073/pnas.1423947112__PNAS. National Academy of Sciences, 2015.https://doi.org/10.1073/pnas.1423947112 .
LibreCat: https://research-explorer.ista.ac.at/record/1538
DOI: 10.1073/pnas.1423947112
PMID: 26085136

Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.”https://doi.org/10.3389/fncom.2015.00145__Frontiers in Computational Neuroscience. Frontiers Research Foundation, 2015.https://doi.org/10.3389/fncom.2015.00145 .
LibreCat: https://research-explorer.ista.ac.at/record/1564
DOI: 10.3389/fncom.2015.00145

Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.”https://doi.org/10.1073/pnas.1508400112__PNAS. National Academy of Sciences, 2015.https://doi.org/10.1073/pnas.1508400112 .
LibreCat: https://research-explorer.ista.ac.at/record/1570
DOI: 10.1073/pnas.1508400112
PMID: 26504200

Bogomolov, Sergiy, Thomas A Henzinger, Andreas Podelski, Jakob Ruess, and Christian Schilling. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.”https://doi.org/10.1007/978-3-319-23401-4_8__Lecture Notes in Computer Science. Springer, 2015.https://doi.org/10.1007/978-3-319-23401-4_8 .
LibreCat: https://research-explorer.ista.ac.at/record/1658
DOI: 10.1007/978-3-319-23401-4_8

Marre, Olivier, Vicente Botella Soler, Kristina Simmons, Thierry Mora, Gasper Tkadik, and Michael Berry. “High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.”https://doi.org/10.1371/journal.pcbi.1004304__PLoS Computational Biology. Public Library of Science, 2015.https://doi.org/10.1371/journal.pcbi.1004304 .
LibreCat: https://research-explorer.ista.ac.at/record/1697
DOI: 10.1371/journal.pcbi.1004304