---
_id: '6853'
abstract:
- lang: eng
  text: This monograph presents a short course in computational geometry and topology.
    In the first part the book covers Voronoi diagrams and Delaunay triangulations,
    then it presents the theory of alpha complexes which play a crucial role in biology.
    The central part of the book is the homology theory and their computation, including
    the theory of persistence which is indispensable for applications, e.g. shape
    reconstruction. The target audience comprises researchers and practitioners in
    mathematics, biology, neuroscience and computer science, but the book may also
    be beneficial to graduate students of these fields.
alternative_title:
- SpringerBriefs in Applied Sciences and Technology
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Edelsbrunner H. <i>A Short Course in Computational Geometry and Topology</i>.
    1st ed. Cham: Springer Nature; 2014. doi:<a href="https://doi.org/10.1007/978-3-319-05957-0">10.1007/978-3-319-05957-0</a>'
  apa: 'Edelsbrunner, H. (2014). <i>A Short Course in Computational Geometry and Topology</i>
    (1st ed.). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-319-05957-0">https://doi.org/10.1007/978-3-319-05957-0</a>'
  chicago: 'Edelsbrunner, Herbert. <i>A Short Course in Computational Geometry and
    Topology</i>. 1st ed. SpringerBriefs in Applied Sciences and Technology. Cham:
    Springer Nature, 2014. <a href="https://doi.org/10.1007/978-3-319-05957-0">https://doi.org/10.1007/978-3-319-05957-0</a>.'
  ieee: 'H. Edelsbrunner, <i>A Short Course in Computational Geometry and Topology</i>,
    1st ed. Cham: Springer Nature, 2014.'
  ista: 'Edelsbrunner H. 2014. A Short Course in Computational Geometry and Topology
    1st ed., Cham: Springer Nature, IX, 110p.'
  mla: Edelsbrunner, Herbert. <i>A Short Course in Computational Geometry and Topology</i>.
    1st ed., Springer Nature, 2014, doi:<a href="https://doi.org/10.1007/978-3-319-05957-0">10.1007/978-3-319-05957-0</a>.
  short: H. Edelsbrunner, A Short Course in Computational Geometry and Topology, 1st
    ed., Springer Nature, Cham, 2014.
date_created: 2019-09-06T09:22:33Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2022-03-04T07:47:54Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-319-05957-0
edition: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: IX, 110
place: Cham
publication_identifier:
  eisbn:
  - 9-783-3190-5957-0
  eissn:
  - 2191-5318
  isbn:
  - 9-783-3190-5956-3
  issn:
  - 2191-530X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: available as eBook via catalog IST BookList
    relation: other
    url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=356106
  - description: available via catalog IST BookList
    relation: other
    url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=373842
scopus_import: '1'
series_title: SpringerBriefs in Applied Sciences and Technology
status: public
title: A Short Course in Computational Geometry and Topology
type: book
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2255'
abstract:
- lang: eng
  text: Motivated by applications in biology, we present an algorithm for estimating
    the length of tube-like shapes in 3-dimensional Euclidean space. In a first step,
    we combine the tube formula of Weyl with integral geometric methods to obtain
    an integral representation of the length, which we approximate using a variant
    of the Koksma-Hlawka Theorem. In a second step, we use tools from computational
    topology to decrease the dependence on small perturbations of the shape. We present
    computational experiments that shed light on the stability and the convergence
    rate of our algorithm.
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
citation:
  ama: Edelsbrunner H, Pausinger F. Stable length estimates of tube-like shapes. <i>Journal
    of Mathematical Imaging and Vision</i>. 2014;50(1):164-177. doi:<a href="https://doi.org/10.1007/s10851-013-0468-x">10.1007/s10851-013-0468-x</a>
  apa: Edelsbrunner, H., &#38; Pausinger, F. (2014). Stable length estimates of tube-like
    shapes. <i>Journal of Mathematical Imaging and Vision</i>. Springer. <a href="https://doi.org/10.1007/s10851-013-0468-x">https://doi.org/10.1007/s10851-013-0468-x</a>
  chicago: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates
    of Tube-like Shapes.” <i>Journal of Mathematical Imaging and Vision</i>. Springer,
    2014. <a href="https://doi.org/10.1007/s10851-013-0468-x">https://doi.org/10.1007/s10851-013-0468-x</a>.
  ieee: H. Edelsbrunner and F. Pausinger, “Stable length estimates of tube-like shapes,”
    <i>Journal of Mathematical Imaging and Vision</i>, vol. 50, no. 1. Springer, pp.
    164–177, 2014.
  ista: Edelsbrunner H, Pausinger F. 2014. Stable length estimates of tube-like shapes.
    Journal of Mathematical Imaging and Vision. 50(1), 164–177.
  mla: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates of Tube-like
    Shapes.” <i>Journal of Mathematical Imaging and Vision</i>, vol. 50, no. 1, Springer,
    2014, pp. 164–77, doi:<a href="https://doi.org/10.1007/s10851-013-0468-x">10.1007/s10851-013-0468-x</a>.
  short: H. Edelsbrunner, F. Pausinger, Journal of Mathematical Imaging and Vision
    50 (2014) 164–177.
corr_author: '1'
date_created: 2018-12-11T11:56:36Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2026-04-16T10:09:04Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1007/s10851-013-0468-x
ec_funded: 1
external_id:
  isi:
  - '000339823000012'
file:
- access_level: open_access
  checksum: 2f93f3e63a38a85cd4404d7953913b14
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:18Z
  date_updated: 2020-07-14T12:45:35Z
  file_id: '5204'
  file_name: IST-2016-549-v1+1_2014-J-06-LengthEstimate.pdf
  file_size: 3941391
  relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: '        50'
isi: 1
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 164 - 177
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: Journal of Mathematical Imaging and Vision
publication_identifier:
  issn:
  - 0924-9907
publication_status: published
publisher: Springer
publist_id: '4691'
pubrep_id: '549'
quality_controlled: '1'
related_material:
  record:
  - id: '2843'
    relation: earlier_version
    status: public
  - id: '1399'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Stable length estimates of tube-like shapes
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 50
year: '2014'
...
---
_id: '2807'
abstract:
- lang: eng
  text: 'We consider several basic problems of algebraic topology, with connections
    to combinatorial and geometric questions, from the point of view of computational
    complexity. The extension problem asks, given topological spaces X; Y , a subspace
    A ⊆ X, and a (continuous) map f : A → Y , whether f can be extended to a map X
    → Y . For computational purposes, we assume that X and Y are represented as finite
    simplicial complexes, A is a subcomplex of X, and f is given as a simplicial map.
    In this generality the problem is undecidable, as follows from Novikov''s result
    from the 1950s on uncomputability of the fundamental group π1(Y ). We thus study
    the problem under the assumption that, for some k ≥ 2, Y is (k - 1)-connected;
    informally, this means that Y has \no holes up to dimension k-1&quot; (a basic
    example of such a Y is the sphere Sk). We prove that, on the one hand, this problem
    is still undecidable for dimX = 2k. On the other hand, for every fixed k ≥ 2,
    we obtain an algorithm that solves the extension problem in polynomial time assuming
    Y (k - 1)-connected and dimX ≤ 2k - 1. For dimX ≤ 2k - 2, the algorithm also provides
    a classification of all extensions up to homotopy (continuous deformation). This
    relies on results of our SODA 2012 paper, and the main new ingredient is a machinery
    of objects with polynomial-time homology, which is a polynomial-time analog of
    objects with effective homology developed earlier by Sergeraert et al. We also
    consider the computation of the higher homotopy groups πk(Y ), k ≥ 2, for a 1-connected
    Y . Their computability was established by Brown in 1957; we show that πk(Y )
    can be computed in polynomial time for every fixed k ≥ 2. On the other hand, Anick
    proved in 1989 that computing πk(Y ) is #P-hard if k is a part of input, where
    Y is a cell complex with certain rather compact encoding. We strengthen his result
    to #P-hardness for Y given as a simplicial complex. '
author:
- first_name: Martin
  full_name: Čadek, Martin
  last_name: Čadek
- first_name: Marek
  full_name: Krcál, Marek
  id: 33E21118-F248-11E8-B48F-1D18A9856A87
  last_name: Krcál
- first_name: Jiří
  full_name: Matoušek, Jiří
  last_name: Matoušek
- first_name: Lukáš
  full_name: Vokřínek, Lukáš
  last_name: Vokřínek
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: 'Čadek M, Krcál M, Matoušek J, Vokřínek L, Wagner U. Extending continuous maps:
    Polynomiality and undecidability. In: <i>45th Annual ACM Symposium on Theory of
    Computing</i>. ACM; 2013:595-604. doi:<a href="https://doi.org/10.1145/2488608.2488683">10.1145/2488608.2488683</a>'
  apa: 'Čadek, M., Krcál, M., Matoušek, J., Vokřínek, L., &#38; Wagner, U. (2013).
    Extending continuous maps: Polynomiality and undecidability. In <i>45th Annual
    ACM Symposium on theory of computing</i> (pp. 595–604). Palo Alto, CA, United
    States: ACM. <a href="https://doi.org/10.1145/2488608.2488683">https://doi.org/10.1145/2488608.2488683</a>'
  chicago: 'Čadek, Martin, Marek Krcál, Jiří Matoušek, Lukáš Vokřínek, and Uli Wagner.
    “Extending Continuous Maps: Polynomiality and Undecidability.” In <i>45th Annual
    ACM Symposium on Theory of Computing</i>, 595–604. ACM, 2013. <a href="https://doi.org/10.1145/2488608.2488683">https://doi.org/10.1145/2488608.2488683</a>.'
  ieee: 'M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, and U. Wagner, “Extending continuous
    maps: Polynomiality and undecidability,” in <i>45th Annual ACM Symposium on theory
    of computing</i>, Palo Alto, CA, United States, 2013, pp. 595–604.'
  ista: 'Čadek M, Krcál M, Matoušek J, Vokřínek L, Wagner U. 2013. Extending continuous
    maps: Polynomiality and undecidability. 45th Annual ACM Symposium on theory of
    computing. STOC: Symposium on the Theory of Computing, 595–604.'
  mla: 'Čadek, Martin, et al. “Extending Continuous Maps: Polynomiality and Undecidability.”
    <i>45th Annual ACM Symposium on Theory of Computing</i>, ACM, 2013, pp. 595–604,
    doi:<a href="https://doi.org/10.1145/2488608.2488683">10.1145/2488608.2488683</a>.'
  short: M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, U. Wagner, in:, 45th Annual
    ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.
conference:
  end_date: 2013-06-04
  location: Palo Alto, CA, United States
  name: 'STOC: Symposium on the Theory of Computing'
  start_date: 2013-06-01
date_created: 2018-12-11T11:59:42Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2021-01-12T06:59:51Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
- _id: HeEd
doi: 10.1145/2488608.2488683
file:
- access_level: open_access
  checksum: 06c2ce5c1135fbc1f71ca15eeb242dcf
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:29Z
  date_updated: 2020-07-14T12:45:48Z
  file_id: '5081'
  file_name: IST-2016-533-v1+1_Extending_continuous_maps_polynomiality_and_undecidability.pdf
  file_size: 447945
  relation: main_file
file_date_updated: 2020-07-14T12:45:48Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 595 - 604
publication: 45th Annual ACM Symposium on theory of computing
publication_status: published
publisher: ACM
publist_id: '4078'
pubrep_id: '533'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Extending continuous maps: Polynomiality and undecidability'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2812'
abstract:
- lang: eng
  text: 'We consider the problem of deciding whether the persistent homology group
    of a simplicial pair (K, L) can be realized as the homology H* (X) of some complex
    X with L ⊂ X ⊂ K. We show that this problem is NP-complete even if K is embedded
    in ℝ3. As a consequence, we show that it is NP-hard to simplify level and sublevel
    sets of scalar functions on S3 within a given tolerance constraint. This problem
    has relevance to the visualization of medical images by isosurfaces. We also show
    an implication to the theory of well groups of scalar functions: not every well
    group can be realized by some level set, and deciding whether a well group can
    be realized is NP-hard.'
acknowledgement: Some of the authors were partially supported by the GIGA ANR grant
  (contract ANR-09-BLAN-0331-01) and the European project CG-Learning (contract 255827).
author:
- first_name: Dominique
  full_name: Attali, Dominique
  last_name: Attali
- first_name: Ulrich
  full_name: Bauer, Ulrich
  id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
  orcid: 0000-0002-9683-0724
- first_name: Olivier
  full_name: Devillers, Olivier
  last_name: Devillers
- first_name: Marc
  full_name: Glisse, Marc
  last_name: Glisse
- first_name: André
  full_name: Lieutier, André
  last_name: Lieutier
citation:
  ama: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. Homological reconstruction
    and simplification in R3. In: <i>Proceedings of the 29th Annual Symposium on Computational
    Geometry</i>. ACM; 2013:117-125. doi:<a href="https://doi.org/10.1145/2462356.2462373">10.1145/2462356.2462373</a>'
  apa: 'Attali, D., Bauer, U., Devillers, O., Glisse, M., &#38; Lieutier, A. (2013).
    Homological reconstruction and simplification in R3. In <i>Proceedings of the
    29th annual symposium on Computational Geometry</i> (pp. 117–125). Rio de Janeiro,
    Brazil: ACM. <a href="https://doi.org/10.1145/2462356.2462373">https://doi.org/10.1145/2462356.2462373</a>'
  chicago: Attali, Dominique, Ulrich Bauer, Olivier Devillers, Marc Glisse, and André
    Lieutier. “Homological Reconstruction and Simplification in R3.” In <i>Proceedings
    of the 29th Annual Symposium on Computational Geometry</i>, 117–25. ACM, 2013.
    <a href="https://doi.org/10.1145/2462356.2462373">https://doi.org/10.1145/2462356.2462373</a>.
  ieee: D. Attali, U. Bauer, O. Devillers, M. Glisse, and A. Lieutier, “Homological
    reconstruction and simplification in R3,” in <i>Proceedings of the 29th annual
    symposium on Computational Geometry</i>, Rio de Janeiro, Brazil, 2013, pp. 117–125.
  ista: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. 2013. Homological reconstruction
    and simplification in R3. Proceedings of the 29th annual symposium on Computational
    Geometry. SoCG: Symposium on Computational Geometry, 117–125.'
  mla: Attali, Dominique, et al. “Homological Reconstruction and Simplification in
    R3.” <i>Proceedings of the 29th Annual Symposium on Computational Geometry</i>,
    ACM, 2013, pp. 117–25, doi:<a href="https://doi.org/10.1145/2462356.2462373">10.1145/2462356.2462373</a>.
  short: D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, in:, Proceedings
    of the 29th Annual Symposium on Computational Geometry, ACM, 2013, pp. 117–125.
conference:
  end_date: 2013-06-20
  location: Rio de Janeiro, Brazil
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2013-06-17
date_created: 2018-12-11T11:59:44Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2025-09-23T09:18:30Z
day: '01'
department:
- _id: HeEd
doi: 10.1145/2462356.2462373
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://hal.archives-ouvertes.fr/hal-00833791/
month: '06'
oa: 1
oa_version: Submitted Version
page: 117 - 125
publication: Proceedings of the 29th annual symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4072'
quality_controlled: '1'
related_material:
  record:
  - id: '1805'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: Homological reconstruction and simplification in R3
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2815'
abstract:
- lang: eng
  text: The fact that a sum of isotropic Gaussian kernels can have more modes than
    kernels is surprising. Extra (ghost) modes do not exist in ℝ1 and are generally
    not well studied in higher dimensions. We study a configuration of n+1 Gaussian
    kernels for which there are exactly n+2 modes. We show that all modes lie on a
    finite set of lines, which we call axes, and study the restriction of the Gaussian
    mixture to these axes in order to discover that there are an exponential number
    of critical points in this configuration. Although the existence of ghost modes
    remained unknown due to the difficulty of finding examples in ℝ2, we show that
    the resilience of ghost modes grows like the square root of the dimension. In
    addition, we exhibit finite configurations of isotropic Gaussian kernels with
    superlinearly many modes.
acknowledgement: This research is partially supported by the National Science Foundation
  (NSF) under Grant DBI-0820624, by the European Science Foundation under the Research
  Networking Programme, and the Russian Government Project 11.G34.31.0053.
article_processing_charge: No
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Brittany Terese
  full_name: Fasy, Brittany Terese
  id: F65D502E-E68D-11E9-9252-C644099818F6
  last_name: Fasy
- first_name: Günter
  full_name: Rote, Günter
  last_name: Rote
citation:
  ama: 'Edelsbrunner H, Fasy BT, Rote G. Add isotropic Gaussian kernels at own risk:
    More and more resilient modes in higher dimensions. <i>Discrete &#38; Computational
    Geometry</i>. 2013;49(4):797-822. doi:<a href="https://doi.org/10.1007/s00454-013-9517-x">10.1007/s00454-013-9517-x</a>'
  apa: 'Edelsbrunner, H., Fasy, B. T., &#38; Rote, G. (2013). Add isotropic Gaussian
    kernels at own risk: More and more resilient modes in higher dimensions. <i>Discrete
    &#38; Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/s00454-013-9517-x">https://doi.org/10.1007/s00454-013-9517-x</a>'
  chicago: 'Edelsbrunner, Herbert, Brittany Terese Fasy, and Günter Rote. “Add Isotropic
    Gaussian Kernels at Own Risk: More and More Resilient Modes in Higher Dimensions.”
    <i>Discrete &#38; Computational Geometry</i>. Springer, 2013. <a href="https://doi.org/10.1007/s00454-013-9517-x">https://doi.org/10.1007/s00454-013-9517-x</a>.'
  ieee: 'H. Edelsbrunner, B. T. Fasy, and G. Rote, “Add isotropic Gaussian kernels
    at own risk: More and more resilient modes in higher dimensions,” <i>Discrete
    &#38; Computational Geometry</i>, vol. 49, no. 4. Springer, pp. 797–822, 2013.'
  ista: 'Edelsbrunner H, Fasy BT, Rote G. 2013. Add isotropic Gaussian kernels at
    own risk: More and more resilient modes in higher dimensions. Discrete &#38; Computational
    Geometry. 49(4), 797–822.'
  mla: 'Edelsbrunner, Herbert, et al. “Add Isotropic Gaussian Kernels at Own Risk:
    More and More Resilient Modes in Higher Dimensions.” <i>Discrete &#38; Computational
    Geometry</i>, vol. 49, no. 4, Springer, 2013, pp. 797–822, doi:<a href="https://doi.org/10.1007/s00454-013-9517-x">10.1007/s00454-013-9517-x</a>.'
  short: H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete &#38; Computational Geometry
    49 (2013) 797–822.
corr_author: '1'
date_created: 2018-12-11T11:59:44Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2025-09-29T14:02:00Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/s00454-013-9517-x
external_id:
  isi:
  - '000320672400005'
intvolume: '        49'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s00454-013-9517-x
month: '06'
oa: 1
oa_version: Published Version
page: 797 - 822
publication: Discrete & Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer
publist_id: '3991'
quality_controlled: '1'
related_material:
  record:
  - id: '3134'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: 'Add isotropic Gaussian kernels at own risk: More and more resilient modes
  in higher dimensions'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 49
year: '2013'
...
---
_id: '2822'
abstract:
- lang: eng
  text: Identification of genes that control root system architecture in crop plants
    requires innovations that enable high-throughput and accurate measurements of
    root system architecture through time. We demonstrate the ability of a semiautomated
    3D in vivo imaging and digital phenotyping pipeline to interrogate the quantitative
    genetic basis of root system growth in a rice biparental mapping population, Bala
    x Azucena. We phenotyped &gt;1,400 3D root models and &gt;57,000 2D images for
    a suite of 25 traits that quantified the distribution, shape, extent of exploration,
    and the intrinsic size of root networks at days 12, 14, and 16 of growth in a
    gellan gum medium. From these data we identified 89 quantitative trait loci, some
    of which correspond to those found previously in soil-grown plants, and provide
    evidence for genetic tradeoffs in root growth allocations, such as between the
    extent and thoroughness of exploration. We also developed a multivariate method
    for generating and mapping central root architecture phenotypes and used it to
    identify five major quantitative trait loci (r2 = 24-37%), two of which were not
    identified by our univariate analysis. Our imaging and analytical platform provides
    a means to identify genes with high potential for improving root traits and agronomic
    qualities of crops.
article_processing_charge: No
author:
- first_name: Christopher
  full_name: Topp, Christopher
  last_name: Topp
- first_name: Anjali
  full_name: Iyer Pascuzzi, Anjali
  last_name: Iyer Pascuzzi
- first_name: Jill
  full_name: Anderson, Jill
  last_name: Anderson
- first_name: Cheng
  full_name: Lee, Cheng
  last_name: Lee
- first_name: Paul
  full_name: Zurek, Paul
  last_name: Zurek
- first_name: Olga
  full_name: Symonova, Olga
  id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
  last_name: Symonova
  orcid: 0000-0003-2012-9947
- first_name: Ying
  full_name: Zheng, Ying
  last_name: Zheng
- first_name: Alexander
  full_name: Bucksch, Alexander
  last_name: Bucksch
- first_name: Yuriy
  full_name: Mileyko, Yuriy
  last_name: Mileyko
- first_name: Taras
  full_name: Galkovskyi, Taras
  last_name: Galkovskyi
- first_name: Brad
  full_name: Moore, Brad
  last_name: Moore
- first_name: John
  full_name: Harer, John
  last_name: Harer
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Thomas
  full_name: Mitchell Olds, Thomas
  last_name: Mitchell Olds
- first_name: Joshua
  full_name: Weitz, Joshua
  last_name: Weitz
- first_name: Philip
  full_name: Benfey, Philip
  last_name: Benfey
citation:
  ama: Topp C, Iyer Pascuzzi A, Anderson J, et al. 3D phenotyping and quantitative
    trait locus mapping identify core regions of the rice genome controlling root
    architecture. <i>PNAS</i>. 2013;110(18):E1695-E1704. doi:<a href="https://doi.org/10.1073/pnas.1304354110">10.1073/pnas.1304354110</a>
  apa: Topp, C., Iyer Pascuzzi, A., Anderson, J., Lee, C., Zurek, P., Symonova, O.,
    … Benfey, P. (2013). 3D phenotyping and quantitative trait locus mapping identify
    core regions of the rice genome controlling root architecture. <i>PNAS</i>. National
    Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1304354110">https://doi.org/10.1073/pnas.1304354110</a>
  chicago: Topp, Christopher, Anjali Iyer Pascuzzi, Jill Anderson, Cheng Lee, Paul
    Zurek, Olga Symonova, Ying Zheng, et al. “3D Phenotyping and Quantitative Trait
    Locus Mapping Identify Core Regions of the Rice Genome Controlling Root Architecture.”
    <i>PNAS</i>. National Academy of Sciences, 2013. <a href="https://doi.org/10.1073/pnas.1304354110">https://doi.org/10.1073/pnas.1304354110</a>.
  ieee: C. Topp <i>et al.</i>, “3D phenotyping and quantitative trait locus mapping
    identify core regions of the rice genome controlling root architecture,” <i>PNAS</i>,
    vol. 110, no. 18. National Academy of Sciences, pp. E1695–E1704, 2013.
  ista: Topp C, Iyer Pascuzzi A, Anderson J, Lee C, Zurek P, Symonova O, Zheng Y,
    Bucksch A, Mileyko Y, Galkovskyi T, Moore B, Harer J, Edelsbrunner H, Mitchell
    Olds T, Weitz J, Benfey P. 2013. 3D phenotyping and quantitative trait locus mapping
    identify core regions of the rice genome controlling root architecture. PNAS.
    110(18), E1695–E1704.
  mla: Topp, Christopher, et al. “3D Phenotyping and Quantitative Trait Locus Mapping
    Identify Core Regions of the Rice Genome Controlling Root Architecture.” <i>PNAS</i>,
    vol. 110, no. 18, National Academy of Sciences, 2013, pp. E1695–704, doi:<a href="https://doi.org/10.1073/pnas.1304354110">10.1073/pnas.1304354110</a>.
  short: C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y.
    Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner,
    T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
date_created: 2018-12-11T11:59:47Z
date_published: 2013-04-30T00:00:00Z
date_updated: 2025-09-29T13:57:21Z
day: '30'
department:
- _id: MaJö
- _id: HeEd
doi: 10.1073/pnas.1304354110
external_id:
  isi:
  - '000318682300008'
  pmid:
  - '25673779'
intvolume: '       110'
isi: 1
issue: '18'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378147/
month: '04'
oa: 1
oa_version: Submitted Version
page: E1695 - E1704
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3979'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 3D phenotyping and quantitative trait locus mapping identify core regions of
  the rice genome controlling root architecture
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2013'
...
---
_id: '2859'
abstract:
- lang: eng
  text: Given a continuous function f:X-R on a topological space, we consider the
    preimages of intervals and their homology groups and show how to read the ranks
    of these groups from the extended persistence diagram of f. In addition, we quantify
    the robustness of the homology classes under perturbations of f using well groups,
    and we show how to read the ranks of these groups from the same extended persistence
    diagram. The special case X=R3 has ramifications in the fields of medical imaging
    and scientific visualization.
article_processing_charge: No
arxiv: 1
author:
- first_name: Paul
  full_name: Bendich, Paul
  id: 43F6EC54-F248-11E8-B48F-1D18A9856A87
  last_name: Bendich
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Dmitriy
  full_name: Morozov, Dmitriy
  last_name: Morozov
- first_name: Amit
  full_name: Patel, Amit
  id: 34A254A0-F248-11E8-B48F-1D18A9856A87
  last_name: Patel
citation:
  ama: Bendich P, Edelsbrunner H, Morozov D, Patel A. Homology and robustness of level
    and interlevel sets. <i>Homology, Homotopy and Applications</i>. 2013;15(1):51-72.
    doi:<a href="https://doi.org/10.4310/HHA.2013.v15.n1.a3">10.4310/HHA.2013.v15.n1.a3</a>
  apa: Bendich, P., Edelsbrunner, H., Morozov, D., &#38; Patel, A. (2013). Homology
    and robustness of level and interlevel sets. <i>Homology, Homotopy and Applications</i>.
    International Press. <a href="https://doi.org/10.4310/HHA.2013.v15.n1.a3">https://doi.org/10.4310/HHA.2013.v15.n1.a3</a>
  chicago: Bendich, Paul, Herbert Edelsbrunner, Dmitriy Morozov, and Amit Patel. “Homology
    and Robustness of Level and Interlevel Sets.” <i>Homology, Homotopy and Applications</i>.
    International Press, 2013. <a href="https://doi.org/10.4310/HHA.2013.v15.n1.a3">https://doi.org/10.4310/HHA.2013.v15.n1.a3</a>.
  ieee: P. Bendich, H. Edelsbrunner, D. Morozov, and A. Patel, “Homology and robustness
    of level and interlevel sets,” <i>Homology, Homotopy and Applications</i>, vol.
    15, no. 1. International Press, pp. 51–72, 2013.
  ista: Bendich P, Edelsbrunner H, Morozov D, Patel A. 2013. Homology and robustness
    of level and interlevel sets. Homology, Homotopy and Applications. 15(1), 51–72.
  mla: Bendich, Paul, et al. “Homology and Robustness of Level and Interlevel Sets.”
    <i>Homology, Homotopy and Applications</i>, vol. 15, no. 1, International Press,
    2013, pp. 51–72, doi:<a href="https://doi.org/10.4310/HHA.2013.v15.n1.a3">10.4310/HHA.2013.v15.n1.a3</a>.
  short: P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and
    Applications 15 (2013) 51–72.
date_created: 2018-12-11T11:59:58Z
date_published: 2013-05-01T00:00:00Z
date_updated: 2025-09-29T13:38:09Z
day: '01'
department:
- _id: HeEd
doi: 10.4310/HHA.2013.v15.n1.a3
external_id:
  arxiv:
  - '1102.3389'
  isi:
  - '000322423600003'
intvolume: '        15'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1102.3389v1
month: '05'
oa: 1
oa_version: Preprint
page: 51 - 72
publication: Homology, Homotopy and Applications
publication_status: published
publisher: International Press
publist_id: '3930'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Homology and robustness of level and interlevel sets
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15
year: '2013'
...
---
_id: '2887'
abstract:
- lang: eng
  text: 'Root system growth and development is highly plastic and is influenced by
    the surrounding environment. Roots frequently grow in heterogeneous environments
    that include interactions from neighboring plants and physical impediments in
    the rhizosphere. To investigate how planting density and physical objects affect
    root system growth, we grew rice in a transparent gel system in close proximity
    with another plant or a physical object. Root systems were imaged and reconstructed
    in three dimensions. Root-root interaction strength was calculated using quantitative
    metrics that characterize the extent towhich the reconstructed root systems overlap
    each other. Surprisingly, we found the overlap of root systems of the same genotype
    was significantly higher than that of root systems of different genotypes. Root
    systems of the same genotype tended to grow toward each other but those of different
    genotypes appeared to avoid each other. Shoot separation experiments excluded
    the possibility of aerial interactions, suggesting root communication. Staggered
    plantings indicated that interactions likely occur at root tips in close proximity.
    Recognition of obstacles also occurred through root tips, but through physical
    contact in a size-dependent manner. These results indicate that root systems use
    two different forms of communication to recognize objects and alter root architecture:
    root-root recognition, possibly mediated through root exudates, and root-object
    recognition mediated by physical contact at the root tips. This finding suggests
    that root tips act as local sensors that integrate rhizosphere information into
    global root architectural changes.'
article_processing_charge: No
article_type: original
author:
- first_name: Suqin
  full_name: Fang, Suqin
  last_name: Fang
- first_name: Randy
  full_name: Clark, Randy
  last_name: Clark
- first_name: Ying
  full_name: Zheng, Ying
  last_name: Zheng
- first_name: Anjali
  full_name: Iyer Pascuzzi, Anjali
  last_name: Iyer Pascuzzi
- first_name: Joshua
  full_name: Weitz, Joshua
  last_name: Weitz
- first_name: Leon
  full_name: Kochian, Leon
  last_name: Kochian
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Hong
  full_name: Liao, Hong
  last_name: Liao
- first_name: Philip
  full_name: Benfey, Philip
  last_name: Benfey
citation:
  ama: Fang S, Clark R, Zheng Y, et al. Genotypic recognition and spatial responses
    by rice roots. <i>PNAS</i>. 2013;110(7):2670-2675. doi:<a href="https://doi.org/10.1073/pnas.1222821110">10.1073/pnas.1222821110</a>
  apa: Fang, S., Clark, R., Zheng, Y., Iyer Pascuzzi, A., Weitz, J., Kochian, L.,
    … Benfey, P. (2013). Genotypic recognition and spatial responses by rice roots.
    <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1222821110">https://doi.org/10.1073/pnas.1222821110</a>
  chicago: Fang, Suqin, Randy Clark, Ying Zheng, Anjali Iyer Pascuzzi, Joshua Weitz,
    Leon Kochian, Herbert Edelsbrunner, Hong Liao, and Philip Benfey. “Genotypic Recognition
    and Spatial Responses by Rice Roots.” <i>PNAS</i>. National Academy of Sciences,
    2013. <a href="https://doi.org/10.1073/pnas.1222821110">https://doi.org/10.1073/pnas.1222821110</a>.
  ieee: S. Fang <i>et al.</i>, “Genotypic recognition and spatial responses by rice
    roots,” <i>PNAS</i>, vol. 110, no. 7. National Academy of Sciences, pp. 2670–2675,
    2013.
  ista: Fang S, Clark R, Zheng Y, Iyer Pascuzzi A, Weitz J, Kochian L, Edelsbrunner
    H, Liao H, Benfey P. 2013. Genotypic recognition and spatial responses by rice
    roots. PNAS. 110(7), 2670–2675.
  mla: Fang, Suqin, et al. “Genotypic Recognition and Spatial Responses by Rice Roots.”
    <i>PNAS</i>, vol. 110, no. 7, National Academy of Sciences, 2013, pp. 2670–75,
    doi:<a href="https://doi.org/10.1073/pnas.1222821110">10.1073/pnas.1222821110</a>.
  short: S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner,
    H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.
date_created: 2018-12-11T12:00:09Z
date_published: 2013-02-12T00:00:00Z
date_updated: 2025-09-29T13:32:25Z
day: '12'
department:
- _id: HeEd
doi: 10.1073/pnas.1222821110
external_id:
  isi:
  - '000315812800060'
  pmid:
  - '23362379'
intvolume: '       110'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574932/
month: '02'
oa: 1
oa_version: Published Version
page: 2670 - 2675
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3872'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genotypic recognition and spatial responses by rice roots
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2013'
...
---
_id: '2901'
abstract:
- lang: eng
  text: ' We introduce the M-modes problem for graphical models: predicting the M
    label configurations of highest probability that are at the same time local maxima
    of the probability landscape. M-modes have multiple possible applications: because
    they are intrinsically diverse, they provide a principled alternative to non-maximum
    suppression techniques for structured prediction, they can act as codebook vectors
    for quantizing the configuration space, or they can form component centers for
    mixture model approximation. We present two algorithms for solving the M-modes
    problem. The first algorithm solves the problem in polynomial time when the underlying
    graphical model is a simple chain. The second algorithm solves the problem for
    junction chains. In synthetic and real dataset, we demonstrate how M-modes can
    improve the performance of prediction. We also use the generated modes as a tool
    to understand the topography of the probability distribution of configurations,
    for example with relation to the training set size and amount of noise in the
    data. '
alternative_title:
- ' JMLR: W&CP'
article_processing_charge: No
author:
- first_name: Chao
  full_name: Chen, Chao
  id: 3E92416E-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Zhu
  full_name: Yan, Zhu
  last_name: Yan
- first_name: Dimitris
  full_name: Metaxas, Dimitris
  last_name: Metaxas
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Chen C, Kolmogorov V, Yan Z, Metaxas D, Lampert C. Computing the M most probable
    modes of a graphical model. In: Vol 31. JMLR; 2013:161-169.'
  apa: 'Chen, C., Kolmogorov, V., Yan, Z., Metaxas, D., &#38; Lampert, C. (2013).
    Computing the M most probable modes of a graphical model (Vol. 31, pp. 161–169).
    Presented at the AISTATS: Conference on Uncertainty in Artificial Intelligence,
    Scottsdale, AZ, United States: JMLR.'
  chicago: Chen, Chao, Vladimir Kolmogorov, Zhu Yan, Dimitris Metaxas, and Christoph
    Lampert. “Computing the M Most Probable Modes of a Graphical Model,” 31:161–69.
    JMLR, 2013.
  ieee: 'C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, and C. Lampert, “Computing the
    M most probable modes of a graphical model,” presented at the AISTATS: Conference
    on Uncertainty in Artificial Intelligence, Scottsdale, AZ, United States, 2013,
    vol. 31, pp. 161–169.'
  ista: 'Chen C, Kolmogorov V, Yan Z, Metaxas D, Lampert C. 2013. Computing the M
    most probable modes of a graphical model. AISTATS: Conference on Uncertainty in
    Artificial Intelligence,  JMLR: W&#38;CP, vol. 31, 161–169.'
  mla: Chen, Chao, et al. <i>Computing the M Most Probable Modes of a Graphical Model</i>.
    Vol. 31, JMLR, 2013, pp. 161–69.
  short: C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, C. Lampert, in:, JMLR, 2013,
    pp. 161–169.
conference:
  end_date: 2013-05-01
  location: Scottsdale, AZ, United States
  name: 'AISTATS: Conference on Uncertainty in Artificial Intelligence'
  start_date: 2013-04-29
date_created: 2018-12-11T12:00:14Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2025-07-10T11:52:23Z
day: '01'
department:
- _id: HeEd
- _id: VlKo
- _id: ChLa
intvolume: '        31'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://jmlr.org/proceedings/papers/v31/chen13a.html
month: '01'
oa: 1
oa_version: None
page: 161 - 169
publication_status: published
publisher: JMLR
publist_id: '3846'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Computing the M most probable modes of a graphical model
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2013'
...
---
_id: '2906'
abstract:
- lang: eng
  text: "Motivated by an application in cell biology, we describe an extension of
    the kinetic data structures framework from Delaunay triangulations to fixed-radius
    alpha complexes. Our algorithm is implemented\r\nusing CGAL, following the exact
    geometric computation paradigm. We report on several\r\ntechniques to accelerate
    the computation that turn our implementation applicable to the underlying biological\r\nproblem."
alternative_title:
- ALENEX
article_processing_charge: No
author:
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Kerber M, Edelsbrunner H. 3D kinetic alpha complexes and their implementation.
    In: <i>2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments</i>.
    Society for Industrial and Applied Mathematics; 2013:70-77. doi:<a href="https://doi.org/10.1137/1.9781611972931.6">10.1137/1.9781611972931.6</a>'
  apa: 'Kerber, M., &#38; Edelsbrunner, H. (2013). 3D kinetic alpha complexes and
    their implementation. In <i>2013 Proceedings of the 15th Workshop on Algorithm
    Engineering and Experiments</i> (pp. 70–77). New Orleans, LA, United States: Society
    for Industrial and Applied Mathematics. <a href="https://doi.org/10.1137/1.9781611972931.6">https://doi.org/10.1137/1.9781611972931.6</a>'
  chicago: Kerber, Michael, and Herbert Edelsbrunner. “3D Kinetic Alpha Complexes
    and Their Implementation.” In <i>2013 Proceedings of the 15th Workshop on Algorithm
    Engineering and Experiments</i>, 70–77. Society for Industrial and Applied Mathematics,
    2013. <a href="https://doi.org/10.1137/1.9781611972931.6">https://doi.org/10.1137/1.9781611972931.6</a>.
  ieee: M. Kerber and H. Edelsbrunner, “3D kinetic alpha complexes and their implementation,”
    in <i>2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments</i>,
    New Orleans, LA, United States, 2013, pp. 70–77.
  ista: 'Kerber M, Edelsbrunner H. 2013. 3D kinetic alpha complexes and their implementation.
    2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments.
    ALENEX: Algorithm Engineering and Experiments, ALENEX, , 70–77.'
  mla: Kerber, Michael, and Herbert Edelsbrunner. “3D Kinetic Alpha Complexes and
    Their Implementation.” <i>2013 Proceedings of the 15th Workshop on Algorithm Engineering
    and Experiments</i>, Society for Industrial and Applied Mathematics, 2013, pp.
    70–77, doi:<a href="https://doi.org/10.1137/1.9781611972931.6">10.1137/1.9781611972931.6</a>.
  short: M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on
    Algorithm Engineering and Experiments, Society for Industrial and Applied Mathematics,
    2013, pp. 70–77.
conference:
  end_date: 2013-01-07
  location: New Orleans, LA, United States
  name: 'ALENEX: Algorithm Engineering and Experiments'
  start_date: 2013-01-07
corr_author: '1'
date_created: 2018-12-11T12:00:16Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2025-06-03T11:47:11Z
day: '01'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.1137/1.9781611972931.6
file:
- access_level: open_access
  checksum: a15a3ba22df9445731507f3e06c9fcee
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:57Z
  date_updated: 2020-07-14T12:45:52Z
  file_id: '4720'
  file_name: IST-2016-547-v1+1_2013-P-08-MedusaII.pdf
  file_size: 403013
  relation: main_file
file_date_updated: 2020-07-14T12:45:52Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 70 - 77
publication: 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments
publication_status: published
publisher: Society for Industrial and Applied Mathematics
publist_id: '3841'
pubrep_id: '547'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 3D kinetic alpha complexes and their implementation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2939'
abstract:
- lang: eng
  text: In this paper, we present the first output-sensitive algorithm to compute
    the persistence diagram of a filtered simplicial complex. For any Γ &gt; 0, it
    returns only those homology classes with persistence at least Γ. Instead of the
    classical reduction via column operations, our algorithm performs rank computations
    on submatrices of the boundary matrix. For an arbitrary constant δ ∈ (0, 1), the
    running time is O (C (1 - δ) Γ R d (n) log n), where C (1 - δ) Γ is the number
    of homology classes with persistence at least (1 - δ) Γ, n is the total number
    of simplices in the complex, d its dimension, and R d (n) is the complexity of
    computing the rank of an n × n matrix with O (d n) nonzero entries. Depending
    on the choice of the rank algorithm, this yields a deterministic O (C (1 - δ)
    Γ n 2.376) algorithm, an O (C (1 - δ) Γ n 2.28) Las-Vegas algorithm, or an O (C
    (1 - δ) Γ n 2 + ε{lunate}) Monte-Carlo algorithm for an arbitrary ε{lunate} &gt;
    0. The space complexity of the Monte-Carlo version is bounded by O (d n) = O (n
    log n).
acknowledgement: The authors thank Herbert Edelsbrunner for many helpful discussions
  and suggestions. Moreover, they are grateful for the careful reviews that helped
  to improve the quality of the paper.
article_processing_charge: No
author:
- first_name: Chao
  full_name: Chen, Chao
  id: 3E92416E-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
citation:
  ama: 'Chen C, Kerber M. An output sensitive algorithm for persistent homology. <i>Computational
    Geometry: Theory and Applications</i>. 2013;46(4):435-447. doi:<a href="https://doi.org/10.1016/j.comgeo.2012.02.010">10.1016/j.comgeo.2012.02.010</a>'
  apa: 'Chen, C., &#38; Kerber, M. (2013). An output sensitive algorithm for persistent
    homology. <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.comgeo.2012.02.010">https://doi.org/10.1016/j.comgeo.2012.02.010</a>'
  chicago: 'Chen, Chao, and Michael Kerber. “An Output Sensitive Algorithm for Persistent
    Homology.” <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2013.
    <a href="https://doi.org/10.1016/j.comgeo.2012.02.010">https://doi.org/10.1016/j.comgeo.2012.02.010</a>.'
  ieee: 'C. Chen and M. Kerber, “An output sensitive algorithm for persistent homology,”
    <i>Computational Geometry: Theory and Applications</i>, vol. 46, no. 4. Elsevier,
    pp. 435–447, 2013.'
  ista: 'Chen C, Kerber M. 2013. An output sensitive algorithm for persistent homology.
    Computational Geometry: Theory and Applications. 46(4), 435–447.'
  mla: 'Chen, Chao, and Michael Kerber. “An Output Sensitive Algorithm for Persistent
    Homology.” <i>Computational Geometry: Theory and Applications</i>, vol. 46, no.
    4, Elsevier, 2013, pp. 435–47, doi:<a href="https://doi.org/10.1016/j.comgeo.2012.02.010">10.1016/j.comgeo.2012.02.010</a>.'
  short: 'C. Chen, M. Kerber, Computational Geometry: Theory and Applications 46 (2013)
    435–447.'
corr_author: '1'
date_created: 2018-12-11T12:00:27Z
date_published: 2013-05-01T00:00:00Z
date_updated: 2025-09-29T13:26:21Z
day: '01'
department:
- _id: HeEd
doi: 10.1016/j.comgeo.2012.02.010
external_id:
  isi:
  - '000314437000004'
intvolume: '        46'
isi: 1
issue: '4'
language:
- iso: eng
month: '05'
oa_version: None
page: 435 - 447
publication: 'Computational Geometry: Theory and Applications'
publication_status: published
publisher: Elsevier
publist_id: '3796'
quality_controlled: '1'
related_material:
  record:
  - id: '3367'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: An output sensitive algorithm for persistent homology
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 46
year: '2013'
...
---
_id: '10897'
abstract:
- lang: eng
  text: Taking images is an efficient way to collect data about the physical world.
    It can be done fast and in exquisite detail. By definition, image processing is
    the field that concerns itself with the computation aimed at harnessing the information
    contained in images [10]. This talk is concerned with topological information.
    Our main thesis is that persistent homology [5] is a useful method to quantify
    and summarize topological information, building a bridge that connects algebraic
    topology with applications. We provide supporting evidence for this thesis by
    touching upon four technical developments in the overlap between persistent homology
    and image processing.
acknowledgement: This research is partially supported by the European Science Foundation
  (ESF) under the Research Network Programme, the European Union under the Toposys
  Project FP7-ICT-318493-STREP, the Russian Government under the Mega Project 11.G34.31.0053.
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Edelsbrunner H. Persistent homology in image processing. In: <i>Graph-Based
    Representations in Pattern Recognition</i>. Vol 7877. LNCS. Berlin, Heidelberg:
    Springer Nature; 2013:182-183. doi:<a href="https://doi.org/10.1007/978-3-642-38221-5_19">10.1007/978-3-642-38221-5_19</a>'
  apa: 'Edelsbrunner, H. (2013). Persistent homology in image processing. In <i>Graph-Based
    Representations in Pattern Recognition</i> (Vol. 7877, pp. 182–183). Berlin, Heidelberg:
    Springer Nature. <a href="https://doi.org/10.1007/978-3-642-38221-5_19">https://doi.org/10.1007/978-3-642-38221-5_19</a>'
  chicago: 'Edelsbrunner, Herbert. “Persistent Homology in Image Processing.” In <i>Graph-Based
    Representations in Pattern Recognition</i>, 7877:182–83. LNCS. Berlin, Heidelberg:
    Springer Nature, 2013. <a href="https://doi.org/10.1007/978-3-642-38221-5_19">https://doi.org/10.1007/978-3-642-38221-5_19</a>.'
  ieee: H. Edelsbrunner, “Persistent homology in image processing,” in <i>Graph-Based
    Representations in Pattern Recognition</i>, Vienna, Austria, 2013, vol. 7877,
    pp. 182–183.
  ista: 'Edelsbrunner H. 2013. Persistent homology in image processing. Graph-Based
    Representations in Pattern Recognition. GbRPR: Graph-based Representations in
    Pattern RecognitionLNCS vol. 7877, 182–183.'
  mla: Edelsbrunner, Herbert. “Persistent Homology in Image Processing.” <i>Graph-Based
    Representations in Pattern Recognition</i>, vol. 7877, Springer Nature, 2013,
    pp. 182–83, doi:<a href="https://doi.org/10.1007/978-3-642-38221-5_19">10.1007/978-3-642-38221-5_19</a>.
  short: H. Edelsbrunner, in:, Graph-Based Representations in Pattern Recognition,
    Springer Nature, Berlin, Heidelberg, 2013, pp. 182–183.
conference:
  end_date: 2013-05-17
  location: Vienna, Austria
  name: 'GbRPR: Graph-based Representations in Pattern Recognition'
  start_date: 2013-05-15
corr_author: '1'
date_created: 2022-03-21T07:30:33Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2025-04-15T08:37:54Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-38221-5_19
ec_funded: 1
intvolume: '      7877'
language:
- iso: eng
month: '06'
oa_version: None
page: 182-183
place: Berlin, Heidelberg
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: Graph-Based Representations in Pattern Recognition
publication_identifier:
  eisbn:
  - '9783642382215'
  eissn:
  - 1611-3349
  isbn:
  - '9783642382208'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Persistent homology in image processing
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7877
year: '2013'
...
---
_id: '2209'
abstract:
- lang: eng
  text: "A straight skeleton is a well-known geometric structure, and several algorithms
    exist to construct the straight skeleton for a given polygon or planar straight-line
    graph. In this paper, we ask the reverse question: Given the straight skeleton
    (in form of a planar straight-line graph, with some rays to infinity), can we
    reconstruct a planar straight-line graph for which this was the straight skeleton?
    We show how to reduce this problem to the problem of finding a line that intersects
    a set of convex polygons. We can find these convex polygons and all such lines
    in $O(nlog n)$ time in the Real RAM computer model, where $n$ denotes the number
    of edges of the input graph. We also explain how our approach can be used for
    recognizing Voronoi diagrams of points, thereby completing a partial solution
    provided by Ash and Bolker in 1985.\r\n"
alternative_title:
- '2013 10th International Symposium on Voronoi Diagrams in Science and Engineering
  (ISVD 2013) '
article_processing_charge: No
author:
- first_name: Therese
  full_name: Biedl, Therese
  last_name: Biedl
- first_name: Martin
  full_name: Held, Martin
  last_name: Held
- first_name: Stefan
  full_name: Huber, Stefan
  id: 4700A070-F248-11E8-B48F-1D18A9856A87
  last_name: Huber
  orcid: 0000-0002-8871-5814
citation:
  ama: 'Biedl T, Held M, Huber S. Recognizing straight skeletons and Voronoi diagrams
    and reconstructing their input. In: IEEE; 2013:37-46. doi:<a href="https://doi.org/10.1109/ISVD.2013.11">10.1109/ISVD.2013.11</a>'
  apa: 'Biedl, T., Held, M., &#38; Huber, S. (2013). Recognizing straight skeletons
    and Voronoi diagrams and reconstructing their input (pp. 37–46). Presented at
    the ISVD: Voronoi Diagrams in Science and Engineering, St. Petersburg, Russia:
    IEEE. <a href="https://doi.org/10.1109/ISVD.2013.11">https://doi.org/10.1109/ISVD.2013.11</a>'
  chicago: Biedl, Therese, Martin Held, and Stefan Huber. “Recognizing Straight Skeletons
    and Voronoi Diagrams and Reconstructing Their Input,” 37–46. IEEE, 2013. <a href="https://doi.org/10.1109/ISVD.2013.11">https://doi.org/10.1109/ISVD.2013.11</a>.
  ieee: 'T. Biedl, M. Held, and S. Huber, “Recognizing straight skeletons and Voronoi
    diagrams and reconstructing their input,” presented at the ISVD: Voronoi Diagrams
    in Science and Engineering, St. Petersburg, Russia, 2013, pp. 37–46.'
  ista: 'Biedl T, Held M, Huber S. 2013. Recognizing straight skeletons and Voronoi
    diagrams and reconstructing their input. ISVD: Voronoi Diagrams in Science and
    Engineering, 2013 10th International Symposium on Voronoi Diagrams in Science
    and Engineering (ISVD 2013) , , 37–46.'
  mla: Biedl, Therese, et al. <i>Recognizing Straight Skeletons and Voronoi Diagrams
    and Reconstructing Their Input</i>. IEEE, 2013, pp. 37–46, doi:<a href="https://doi.org/10.1109/ISVD.2013.11">10.1109/ISVD.2013.11</a>.
  short: T. Biedl, M. Held, S. Huber, in:, IEEE, 2013, pp. 37–46.
conference:
  end_date: 2013-07-10
  location: St. Petersburg, Russia
  name: 'ISVD: Voronoi Diagrams in Science and Engineering'
  start_date: 2013-07-08
date_created: 2018-12-11T11:56:20Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2025-09-29T14:30:56Z
day: '01'
department:
- _id: HeEd
doi: 10.1109/ISVD.2013.11
external_id:
  isi:
  - '000430602800007'
isi: 1
language:
- iso: eng
month: '12'
oa_version: None
page: 37 - 46
publication_identifier:
  eisbn:
  - '978-0-7695-5037-4 '
publication_status: published
publisher: IEEE
publist_id: '4763'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Recognizing straight skeletons and Voronoi diagrams and reconstructing their
  input
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2013'
...
---
_id: '2210'
abstract:
- lang: eng
  text: 'A straight skeleton is a well-known geometric structure, and several algorithms
    exist to construct the straight skeleton for a given polygon. In this paper, we
    ask the reverse question: Given the straight skeleton (in form of a tree with
    a drawing in the plane, but with the exact position of the leaves unspecified),
    can we reconstruct the polygon? We show that in most cases there exists at most
    one polygon; in the remaining case there is an infinite number of polygons determined
    by one angle that can range in an interval. We can find this (set of) polygon(s)
    in linear time in the Real RAM computer model.'
author:
- first_name: Therese
  full_name: Biedl, Therese
  last_name: Biedl
- first_name: Martin
  full_name: Held, Martin
  last_name: Held
- first_name: Stefan
  full_name: Huber, Stefan
  id: 4700A070-F248-11E8-B48F-1D18A9856A87
  last_name: Huber
  orcid: 0000-0002-8871-5814
citation:
  ama: 'Biedl T, Held M, Huber S. Reconstructing polygons from embedded straight skeletons.
    In: <i>29th European Workshop on Computational Geometry</i>. TU Braunschweig;
    2013:95-98.'
  apa: 'Biedl, T., Held, M., &#38; Huber, S. (2013). Reconstructing polygons from
    embedded straight skeletons. In <i>29th European Workshop on Computational Geometry</i>
    (pp. 95–98). Braunschweig, Germany: TU Braunschweig.'
  chicago: Biedl, Therese, Martin Held, and Stefan Huber. “Reconstructing Polygons
    from Embedded Straight Skeletons.” In <i>29th European Workshop on Computational
    Geometry</i>, 95–98. TU Braunschweig, 2013.
  ieee: T. Biedl, M. Held, and S. Huber, “Reconstructing polygons from embedded straight
    skeletons,” in <i>29th European Workshop on Computational Geometry</i>, Braunschweig,
    Germany, 2013, pp. 95–98.
  ista: 'Biedl T, Held M, Huber S. 2013. Reconstructing polygons from embedded straight
    skeletons. 29th European Workshop on Computational Geometry. EuroCG: European
    Workshop on Computational Geometry, 95–98.'
  mla: Biedl, Therese, et al. “Reconstructing Polygons from Embedded Straight Skeletons.”
    <i>29th European Workshop on Computational Geometry</i>, TU Braunschweig, 2013,
    pp. 95–98.
  short: T. Biedl, M. Held, S. Huber, in:, 29th European Workshop on Computational
    Geometry, TU Braunschweig, 2013, pp. 95–98.
conference:
  end_date: 2013-03-20
  location: Braunschweig, Germany
  name: 'EuroCG: European Workshop on Computational Geometry'
  start_date: 2013-03-17
date_created: 2018-12-11T11:56:21Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2021-01-12T06:56:00Z
day: '01'
department:
- _id: HeEd
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ibr.cs.tu-bs.de/alg/eurocg13/booklet_eurocg13.pdf
month: '03'
oa: 1
oa_version: Submitted Version
page: 95 - 98
publication: 29th European Workshop on Computational Geometry
publication_status: published
publisher: TU Braunschweig
publist_id: '4762'
status: public
title: Reconstructing polygons from embedded straight skeletons
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2304'
abstract:
- lang: eng
  text: This extended abstract is concerned with the irregularities of distribution
    of one-dimensional permuted van der Corput sequences that are generated from linear
    permutations. We show how to obtain upper bounds for the discrepancy and diaphony
    of these sequences, by relating them to Kronecker sequences and applying earlier
    results of Faure and Niederreiter.
acknowledgement: This research is supported by the Graduate school of IST Austria
  (Institute of Science and Technology Austria).
author:
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
citation:
  ama: Pausinger F. Van der Corput sequences and linear permutations. <i>Electronic
    Notes in Discrete Mathematics</i>. 2013;43:43-50. doi:<a href="https://doi.org/10.1016/j.endm.2013.07.008">10.1016/j.endm.2013.07.008</a>
  apa: Pausinger, F. (2013). Van der Corput sequences and linear permutations. <i>Electronic
    Notes in Discrete Mathematics</i>. Elsevier. <a href="https://doi.org/10.1016/j.endm.2013.07.008">https://doi.org/10.1016/j.endm.2013.07.008</a>
  chicago: Pausinger, Florian. “Van Der Corput Sequences and Linear Permutations.”
    <i>Electronic Notes in Discrete Mathematics</i>. Elsevier, 2013. <a href="https://doi.org/10.1016/j.endm.2013.07.008">https://doi.org/10.1016/j.endm.2013.07.008</a>.
  ieee: F. Pausinger, “Van der Corput sequences and linear permutations,” <i>Electronic
    Notes in Discrete Mathematics</i>, vol. 43. Elsevier, pp. 43–50, 2013.
  ista: Pausinger F. 2013. Van der Corput sequences and linear permutations. Electronic
    Notes in Discrete Mathematics. 43, 43–50.
  mla: Pausinger, Florian. “Van Der Corput Sequences and Linear Permutations.” <i>Electronic
    Notes in Discrete Mathematics</i>, vol. 43, Elsevier, 2013, pp. 43–50, doi:<a
    href="https://doi.org/10.1016/j.endm.2013.07.008">10.1016/j.endm.2013.07.008</a>.
  short: F. Pausinger, Electronic Notes in Discrete Mathematics 43 (2013) 43–50.
corr_author: '1'
date_created: 2018-12-11T11:56:53Z
date_published: 2013-09-05T00:00:00Z
date_updated: 2024-10-09T20:55:15Z
day: '05'
department:
- _id: HeEd
doi: 10.1016/j.endm.2013.07.008
intvolume: '        43'
language:
- iso: eng
month: '09'
oa_version: None
page: 43 - 50
publication: Electronic Notes in Discrete Mathematics
publication_status: published
publisher: Elsevier
publist_id: '4623'
quality_controlled: '1'
scopus_import: 1
status: public
title: Van der Corput sequences and linear permutations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2013'
...
---
_id: '2843'
abstract:
- lang: eng
  text: 'Mathematical objects can be measured unambiguously, but not so objects from
    our physical world. Even the total length of tubelike shapes has its difficulties.
    We introduce a combination of geometric, probabilistic, and topological methods
    to design a stable length estimate for tube-like shapes; that is: one that is
    insensitive to small shape changes.'
alternative_title:
- LNCS
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
citation:
  ama: 'Edelsbrunner H, Pausinger F. Stable length estimates of tube-like shapes.
    In: <i>17th IAPR International Conference on Discrete Geometry for Computer Imagery</i>.
    Vol 7749. Springer; 2013:XV-XIX. doi:<a href="https://doi.org/10.1007/978-3-642-37067-0">10.1007/978-3-642-37067-0</a>'
  apa: 'Edelsbrunner, H., &#38; Pausinger, F. (2013). Stable length estimates of tube-like
    shapes. In <i>17th IAPR International Conference on Discrete Geometry for Computer
    Imagery</i> (Vol. 7749, pp. XV–XIX). Seville, Spain: Springer. <a href="https://doi.org/10.1007/978-3-642-37067-0">https://doi.org/10.1007/978-3-642-37067-0</a>'
  chicago: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates
    of Tube-like Shapes.” In <i>17th IAPR International Conference on Discrete Geometry
    for Computer Imagery</i>, 7749:XV–XIX. Springer, 2013. <a href="https://doi.org/10.1007/978-3-642-37067-0">https://doi.org/10.1007/978-3-642-37067-0</a>.
  ieee: H. Edelsbrunner and F. Pausinger, “Stable length estimates of tube-like shapes,”
    in <i>17th IAPR International Conference on Discrete Geometry for Computer Imagery</i>,
    Seville, Spain, 2013, vol. 7749, pp. XV–XIX.
  ista: 'Edelsbrunner H, Pausinger F. 2013. Stable length estimates of tube-like shapes.
    17th IAPR International Conference on Discrete Geometry for Computer Imagery.
    DGCI: Discrete Geometry for Computer Imagery, LNCS, vol. 7749, XV–XIX.'
  mla: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates of Tube-like
    Shapes.” <i>17th IAPR International Conference on Discrete Geometry for Computer
    Imagery</i>, vol. 7749, Springer, 2013, pp. XV–XIX, doi:<a href="https://doi.org/10.1007/978-3-642-37067-0">10.1007/978-3-642-37067-0</a>.
  short: H. Edelsbrunner, F. Pausinger, in:, 17th IAPR International Conference on
    Discrete Geometry for Computer Imagery, Springer, 2013, pp. XV–XIX.
conference:
  end_date: 2013-03-22
  location: Seville, Spain
  name: 'DGCI: Discrete Geometry for Computer Imagery'
  start_date: 2013-03-20
date_created: 2018-12-11T11:59:53Z
date_published: 2013-02-21T00:00:00Z
date_updated: 2026-04-16T10:09:03Z
day: '21'
department:
- _id: HeEd
doi: 10.1007/978-3-642-37067-0
intvolume: '      7749'
language:
- iso: eng
month: '02'
oa_version: None
page: XV - XIX
publication: 17th IAPR International Conference on Discrete Geometry for Computer
  Imagery
publication_status: published
publisher: Springer
publist_id: '3952'
quality_controlled: '1'
related_material:
  record:
  - id: '2255'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: Stable length estimates of tube-like shapes
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7749
year: '2013'
...
---
_id: '2849'
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Nataliya
  full_name: Strelkova, Nataliya
  last_name: Strelkova
citation:
  ama: Edelsbrunner H, Strelkova N. On the configuration space of Steiner minimal
    trees. <i>Russian Mathematical Surveys</i>. 2012;67(6):1167-1168. doi:<a href="https://doi.org/10.1070/RM2012v067n06ABEH004820">10.1070/RM2012v067n06ABEH004820</a>
  apa: Edelsbrunner, H., &#38; Strelkova, N. (2012). On the configuration space of
    Steiner minimal trees. <i>Russian Mathematical Surveys</i>. IOP Publishing. <a
    href="https://doi.org/10.1070/RM2012v067n06ABEH004820">https://doi.org/10.1070/RM2012v067n06ABEH004820</a>
  chicago: Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space
    of Steiner Minimal Trees.” <i>Russian Mathematical Surveys</i>. IOP Publishing,
    2012. <a href="https://doi.org/10.1070/RM2012v067n06ABEH004820">https://doi.org/10.1070/RM2012v067n06ABEH004820</a>.
  ieee: H. Edelsbrunner and N. Strelkova, “On the configuration space of Steiner minimal
    trees,” <i>Russian Mathematical Surveys</i>, vol. 67, no. 6. IOP Publishing, pp.
    1167–1168, 2012.
  ista: Edelsbrunner H, Strelkova N. 2012. On the configuration space of Steiner minimal
    trees. Russian Mathematical Surveys. 67(6), 1167–1168.
  mla: Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space
    of Steiner Minimal Trees.” <i>Russian Mathematical Surveys</i>, vol. 67, no. 6,
    IOP Publishing, 2012, pp. 1167–68, doi:<a href="https://doi.org/10.1070/RM2012v067n06ABEH004820">10.1070/RM2012v067n06ABEH004820</a>.
  short: H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.
date_created: 2018-12-11T11:59:55Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2025-09-30T08:19:37Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1070/RM2012v067n06ABEH004820
external_id:
  isi:
  - '000315950100005'
file:
- access_level: open_access
  checksum: 44ee8d173487e8ed41a51136816bbeb4
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:26Z
  date_updated: 2020-07-14T12:45:51Z
  file_id: '5078'
  file_name: IST-2016-546-v1+1_2014-J-05-SteinerMinTrees.pdf
  file_size: 392021
  relation: main_file
file_date_updated: 2020-07-14T12:45:51Z
has_accepted_license: '1'
intvolume: '        67'
isi: 1
issue: '6'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 1167 - 1168
publication: Russian Mathematical Surveys
publication_status: published
publisher: IOP Publishing
publist_id: '3943'
pubrep_id: '546'
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the configuration space of Steiner minimal trees
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 67
year: '2012'
...
---
_id: '2902'
abstract:
- lang: eng
  text: 'We present an algorithm for simplifying linear cartographic objects and results
    obtained with a computer program implementing this algorithm. '
article_processing_charge: No
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Oleg
  full_name: Musin, Oleg
  last_name: Musin
- first_name: Alexey
  full_name: Ukhalov, Alexey
  last_name: Ukhalov
- first_name: Olga
  full_name: Yakimova, Olga
  last_name: Yakimova
- first_name: Vladislav
  full_name: Alexeev, Vladislav
  last_name: Alexeev
- first_name: Victoriya
  full_name: Bogaevskaya, Victoriya
  last_name: Bogaevskaya
- first_name: Andrey
  full_name: Gorohov, Andrey
  last_name: Gorohov
- first_name: Margarita
  full_name: Preobrazhenskaya, Margarita
  last_name: Preobrazhenskaya
citation:
  ama: Edelsbrunner H, Musin O, Ukhalov A, et al. Fractal and computational geometry
    for generalizing cartographic objects. <i>Modeling and Analysis of Information
    Systems</i>. 2012;19(6):152-160.
  apa: Edelsbrunner, H., Musin, O., Ukhalov, A., Yakimova, O., Alexeev, V., Bogaevskaya,
    V., … Preobrazhenskaya, M. (2012). Fractal and computational geometry for generalizing
    cartographic objects. <i>Modeling and Analysis of Information Systems</i>. Russian
    Academy of Sciences.
  chicago: Edelsbrunner, Herbert, Oleg Musin, Alexey Ukhalov, Olga Yakimova, Vladislav
    Alexeev, Victoriya Bogaevskaya, Andrey Gorohov, and Margarita Preobrazhenskaya.
    “Fractal and computational geometry for generalizing cartographic objects.” <i>Modeling
    and Analysis of Information Systems</i>. Russian Academy of Sciences, 2012.
  ieee: H. Edelsbrunner <i>et al.</i>, “Fractal and computational geometry for generalizing
    cartographic objects,” <i>Modeling and Analysis of Information Systems</i>, vol.
    19, no. 6. Russian Academy of Sciences, pp. 152–160, 2012.
  ista: Edelsbrunner H, Musin O, Ukhalov A, Yakimova O, Alexeev V, Bogaevskaya V,
    Gorohov A, Preobrazhenskaya M. 2012. Fractal and computational geometry for generalizing
    cartographic objects. Modeling and Analysis of Information Systems. 19(6), 152–160.
  mla: Edelsbrunner, Herbert, et al. “Fractal and computational geometry for generalizing
    cartographic objects.” <i>Modeling and Analysis of Information Systems</i>, vol.
    19, no. 6, Russian Academy of Sciences, 2012, pp. 152–60.
  short: H. Edelsbrunner, O. Musin, A. Ukhalov, O. Yakimova, V. Alexeev, V. Bogaevskaya,
    A. Gorohov, M. Preobrazhenskaya, Modeling and Analysis of Information Systems
    19 (2012) 152–160.
date_created: 2018-12-11T12:00:15Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2023-10-18T07:34:45Z
day: '01'
department:
- _id: HeEd
intvolume: '        19'
issue: '6'
language:
- iso: rus
main_file_link:
- open_access: '1'
  url: http://mi.mathnet.ru/eng/mais280
month: '12'
oa: 1
oa_version: Published Version
page: 152 - 160
publication: Modeling and Analysis of Information Systems
publication_status: published
publisher: Russian Academy of Sciences
publist_id: '3845'
quality_controlled: '1'
status: public
title: Fractal and computational geometry for generalizing cartographic objects
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2012'
...
---
_id: '2903'
abstract:
- lang: eng
  text: In order to enjoy a digital version of the Jordan Curve Theorem, it is common
    to use the closed topology for the foreground and the open topology for the background
    of a 2-dimensional binary image. In this paper, we introduce a single topology
    that enjoys this theorem for all thresholds decomposing a real-valued image into
    foreground and background. This topology is easy to construct and it generalizes
    to n-dimensional images.
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Olga
  full_name: Symonova, Olga
  id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
  last_name: Symonova
  orcid: 0000-0003-2012-9947
citation:
  ama: 'Edelsbrunner H, Symonova O. The adaptive topology of a digital image. In:
    IEEE; 2012:41-48. doi:<a href="https://doi.org/10.1109/ISVD.2012.11">10.1109/ISVD.2012.11</a>'
  apa: 'Edelsbrunner, H., &#38; Symonova, O. (2012). The adaptive topology of a digital
    image (pp. 41–48). Presented at the ISVD: International Symposium on Voronoi Diagrams
    in Science and Engineering, New Brunswick, NJ, USA : IEEE. <a href="https://doi.org/10.1109/ISVD.2012.11">https://doi.org/10.1109/ISVD.2012.11</a>'
  chicago: Edelsbrunner, Herbert, and Olga Symonova. “The Adaptive Topology of a Digital
    Image,” 41–48. IEEE, 2012. <a href="https://doi.org/10.1109/ISVD.2012.11">https://doi.org/10.1109/ISVD.2012.11</a>.
  ieee: 'H. Edelsbrunner and O. Symonova, “The adaptive topology of a digital image,”
    presented at the ISVD: International Symposium on Voronoi Diagrams in Science
    and Engineering, New Brunswick, NJ, USA , 2012, pp. 41–48.'
  ista: 'Edelsbrunner H, Symonova O. 2012. The adaptive topology of a digital image.
    ISVD: International Symposium on Voronoi Diagrams in Science and Engineering,
    41–48.'
  mla: Edelsbrunner, Herbert, and Olga Symonova. <i>The Adaptive Topology of a Digital
    Image</i>. IEEE, 2012, pp. 41–48, doi:<a href="https://doi.org/10.1109/ISVD.2012.11">10.1109/ISVD.2012.11</a>.
  short: H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48.
conference:
  end_date: 2012-06-29
  location: 'New Brunswick, NJ, USA '
  name: 'ISVD: International Symposium on Voronoi Diagrams in Science and Engineering'
  start_date: 2012-06-27
corr_author: '1'
date_created: 2018-12-11T12:00:15Z
date_published: 2012-08-06T00:00:00Z
date_updated: 2024-10-09T20:54:57Z
day: '06'
ddc:
- '000'
department:
- _id: HeEd
- _id: MaJö
doi: 10.1109/ISVD.2012.11
file:
- access_level: open_access
  checksum: 444869a4e8abf07834f88b6e5cb5e9c3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:41Z
  date_updated: 2020-07-14T12:45:52Z
  file_id: '4765'
  file_name: IST-2016-545-v1+1_2012-P-10-AdaptiveTopology.pdf
  file_size: 760548
  relation: main_file
file_date_updated: 2020-07-14T12:45:52Z
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 41 - 48
publication_status: published
publisher: IEEE
publist_id: '3844'
pubrep_id: '545'
quality_controlled: '1'
scopus_import: 1
status: public
title: The adaptive topology of a digital image
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '2904'
abstract:
- lang: eng
  text: Generalized van der Corput sequences are onedimensional, infinite sequences
    in the unit interval. They are generated from permutations in integer base b and
    are the building blocks of the multi-dimensional Halton sequences. Motivated by
    recent progress of Atanassov on the uniform distribution behavior of Halton sequences,
    we study, among others, permutations of the form P(i) = ai (mod b) for coprime
    integers a and b. We show that multipliers a that either divide b - 1 or b + 1
    generate van der Corput sequences with weak distribution properties. We give explicit
    lower bounds for the asymptotic distribution behavior of these sequences and relate
    them to sequences generated from the identity permutation in smaller bases, which
    are, due to Faure, the weakest distributed generalized van der Corput sequences.
- lang: fre
  text: Les suites de Van der Corput généralisées sont dessuites unidimensionnelles
    et infinies dans l’intervalle de l’unité.Elles sont générées par permutations
    des entiers de la basebetsont les éléments constitutifs des suites multi-dimensionnelles
    deHalton. Suites aux progrès récents d’Atanassov concernant le com-portement de
    distribution uniforme des suites de Halton nous nousintéressons aux permutations
    de la formuleP(i)  =ai(modb)pour les entiers premiers entre euxaetb. Dans cet
    article nousidentifions des multiplicateursagénérant des suites de Van derCorput
    ayant une mauvaise distribution. Nous donnons les bornesinférieures explicites
    pour cette distribution asymptotique asso-ciée à ces suites et relions ces dernières
    aux suites générées parpermutation d’identité, qui sont, selon Faure, les moins
    bien dis-tribuées des suites généralisées de Van der Corput dans une basedonnée.
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
citation:
  ama: Pausinger F. Weak multipliers for generalized van der Corput sequences. <i>Journal
    de Theorie des Nombres des Bordeaux</i>. 2012;24(3):729-749. doi:<a href="https://doi.org/10.5802/jtnb.819">10.5802/jtnb.819</a>
  apa: Pausinger, F. (2012). Weak multipliers for generalized van der Corput sequences.
    <i>Journal de Theorie Des Nombres Des Bordeaux</i>. Université de Bordeaux. <a
    href="https://doi.org/10.5802/jtnb.819">https://doi.org/10.5802/jtnb.819</a>
  chicago: Pausinger, Florian. “Weak Multipliers for Generalized van Der Corput Sequences.”
    <i>Journal de Theorie Des Nombres Des Bordeaux</i>. Université de Bordeaux, 2012.
    <a href="https://doi.org/10.5802/jtnb.819">https://doi.org/10.5802/jtnb.819</a>.
  ieee: F. Pausinger, “Weak multipliers for generalized van der Corput sequences,”
    <i>Journal de Theorie des Nombres des Bordeaux</i>, vol. 24, no. 3. Université
    de Bordeaux, pp. 729–749, 2012.
  ista: Pausinger F. 2012. Weak multipliers for generalized van der Corput sequences.
    Journal de Theorie des Nombres des Bordeaux. 24(3), 729–749.
  mla: Pausinger, Florian. “Weak Multipliers for Generalized van Der Corput Sequences.”
    <i>Journal de Theorie Des Nombres Des Bordeaux</i>, vol. 24, no. 3, Université
    de Bordeaux, 2012, pp. 729–49, doi:<a href="https://doi.org/10.5802/jtnb.819">10.5802/jtnb.819</a>.
  short: F. Pausinger, Journal de Theorie Des Nombres Des Bordeaux 24 (2012) 729–749.
date_created: 2018-12-11T12:00:15Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2025-09-30T08:18:15Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.5802/jtnb.819
external_id:
  isi:
  - '000315243100011'
file:
- access_level: open_access
  checksum: 6954bfe9d7f4119fbdda7a11cf0f5c67
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-11T12:40:39Z
  date_updated: 2020-07-14T12:45:52Z
  file_id: '7819'
  file_name: JTNB_2012__24_3_729_0.pdf
  file_size: 819275
  relation: main_file
file_date_updated: 2020-07-14T12:45:52Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '3'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 729 - 749
publication: Journal de Theorie des Nombres des Bordeaux
publication_identifier:
  eissn:
  - 2118-8572
  issn:
  - 1246-7405
publication_status: published
publisher: Université de Bordeaux
publist_id: '3843'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Weak multipliers for generalized van der Corput sequences
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 24
year: '2012'
...
