---
_id: '17145'
abstract:
- lang: eng
  text: Grid peeling is the process of repeatedly removing the convex hull vertices
    of the grid points that lie inside a given convex curve. It has been conjectured
    that, for a more and more refined grid, grid peeling converges to a continuous
    process, the affine curve-shortening flow, which deforms the curve based on the
    curvature. We prove this conjecture for one class of curves, parabolas with a
    vertical axis, and we determine the value of the constant factor in the formula
    that relates the two processes.
acknowledgement: Part of this work was done while G.R. enjoyed the hospitality of
  the Institute of Science and Technology Austria (ISTA) as a visiting professor during
  his sabbatical in the winter semester 2022/23.
alternative_title:
- LIPIcs
article_number: '76'
article_processing_charge: No
arxiv: 1
author:
- first_name: Günter
  full_name: Rote, Günter
  last_name: Rote
- first_name: Moritz
  full_name: Rüber, Moritz
  last_name: Rüber
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: 'Rote G, Rüber M, Saghafian M. Grid peeling of parabolas. In: <i>40th International
    Symposium on Computational Geometry</i>. Vol 293. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.76">10.4230/LIPIcs.SoCG.2024.76</a>'
  apa: 'Rote, G., Rüber, M., &#38; Saghafian, M. (2024). Grid peeling of parabolas.
    In <i>40th International Symposium on Computational Geometry</i> (Vol. 293). Athens,
    Greece: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.76">https://doi.org/10.4230/LIPIcs.SoCG.2024.76</a>'
  chicago: Rote, Günter, Moritz Rüber, and Morteza Saghafian. “Grid Peeling of Parabolas.”
    In <i>40th International Symposium on Computational Geometry</i>, Vol. 293. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.76">https://doi.org/10.4230/LIPIcs.SoCG.2024.76</a>.
  ieee: G. Rote, M. Rüber, and M. Saghafian, “Grid peeling of parabolas,” in <i>40th
    International Symposium on Computational Geometry</i>, Athens, Greece, 2024, vol.
    293.
  ista: 'Rote G, Rüber M, Saghafian M. 2024. Grid peeling of parabolas. 40th International
    Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry,
    LIPIcs, vol. 293, 76.'
  mla: Rote, Günter, et al. “Grid Peeling of Parabolas.” <i>40th International Symposium
    on Computational Geometry</i>, vol. 293, 76, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.76">10.4230/LIPIcs.SoCG.2024.76</a>.
  short: G. Rote, M. Rüber, M. Saghafian, in:, 40th International Symposium on Computational
    Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
  end_date: 2024-06-14
  location: Athens, Greece
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2024-06-11
das_tickbox: '0'
date_created: 2024-06-16T22:01:06Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2026-10-02T11:47:18Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.76
external_id:
  arxiv:
  - '2402.15787'
file:
- access_level: open_access
  checksum: fbad1de06383a6b7e8a1cb3e8c7205ce
  content_type: application/pdf
  creator: dernst
  date_created: 2024-06-17T08:40:04Z
  date_updated: 2024-06-17T08:40:04Z
  file_id: '17151'
  file_name: 2024_LIPICS_Rote.pdf
  file_size: 1430896
  relation: main_file
  success: 1
file_date_updated: 2024-06-17T08:40:04Z
fulldoi: https://doi.org/10.4230/LIPIcs.SoCG.2024.76
has_accepted_license: '1'
intvolume: '       293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: 40th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - '9783959773164'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Grid peeling of parabolas
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 293
year: '2024'
...
---
_id: '17891'
abstract:
- lang: eng
  text: "Abstract\r\nMethods used in topological data analysis naturally capture higher-order
    interactions in point cloud data embedded in a metric space. This methodology
    was recently extended to data living in an information space, by which we mean
    a space measured with an information theoretical distance. One such setting is
    a finite collection of discrete probability distributions embedded in the probability
    simplex measured with the relative entropy (Kullback–Leibler divergence). More
    generally, one can work with a Bregman divergence parameterized by a different
    notion of entropy. While theoretical algorithms exist for this setup, there is
    a paucity of implementations for exploring and comparing geometric-topological
    properties of various information spaces. The interest of this work is therefore
    twofold. First, we propose the first robust algorithms and software for geometric
    and topological data analysis in information space. Perhaps surprisingly, despite
    working with Bregman divergences, our design reuses robust libraries for the Euclidean
    case. Second, using the new software, we take the first steps towards understanding
    the geometric-topological structure of these spaces. In particular, we compare
    them with the more familiar spaces equipped with the Euclidean and Fisher metrics."
acknowledgement: We thank Anton Nikitenko for first observing that the Wrap complex
  can be characterized as stated in Claim (ii) of the Wrap Complex Lemma, and Ondrej
  Draganov for correcting a critical mistake in one of our formulas in Section 2.
article_number: '637'
article_processing_charge: Yes
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Katharina
  full_name: Ölsböck, Katharina
  id: 4D4AA390-F248-11E8-B48F-1D18A9856A87
  last_name: Ölsböck
  orcid: 0000-0002-4672-8297
- first_name: Hubert
  full_name: Wagner, Hubert
  id: 379CA8B8-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0009-0009-9111-8429
citation:
  ama: Edelsbrunner H, Ölsböck K, Wagner H. Understanding higher-order interactions
    in information space. <i>Entropy</i>. 2024;26(8). doi:<a href="https://doi.org/10.3390/e26080637">10.3390/e26080637</a>
  apa: Edelsbrunner, H., Ölsböck, K., &#38; Wagner, H. (2024). Understanding higher-order
    interactions in information space. <i>Entropy</i>. MDPI. <a href="https://doi.org/10.3390/e26080637">https://doi.org/10.3390/e26080637</a>
  chicago: Edelsbrunner, Herbert, Katharina Ölsböck, and Hubert Wagner. “Understanding
    Higher-Order Interactions in Information Space.” <i>Entropy</i>. MDPI, 2024. <a
    href="https://doi.org/10.3390/e26080637">https://doi.org/10.3390/e26080637</a>.
  ieee: H. Edelsbrunner, K. Ölsböck, and H. Wagner, “Understanding higher-order interactions
    in information space,” <i>Entropy</i>, vol. 26, no. 8. MDPI, 2024.
  ista: Edelsbrunner H, Ölsböck K, Wagner H. 2024. Understanding higher-order interactions
    in information space. Entropy. 26(8), 637.
  mla: Edelsbrunner, Herbert, et al. “Understanding Higher-Order Interactions in Information
    Space.” <i>Entropy</i>, vol. 26, no. 8, 637, MDPI, 2024, doi:<a href="https://doi.org/10.3390/e26080637">10.3390/e26080637</a>.
  short: H. Edelsbrunner, K. Ölsböck, H. Wagner, Entropy 26 (2024).
das_tickbox: '1'
dataavailabilitystatement: 'The software and data used for this study is available
  at: https://git.ista.ac.at/katharina.oelsboeck/wrap_2_3-public/ (accessed on 19
  July 2024).'
date_created: 2024-09-08T22:01:11Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2026-10-02T11:50:23Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.3390/e26080637
external_id:
  isi:
  - '001305543500001'
  pmid:
  - '39202107'
file:
- access_level: open_access
  checksum: 624a9e2c5b49d6c38b88b0f675467ba3
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-09T09:01:12Z
  date_updated: 2024-09-09T09:01:12Z
  file_id: '17948'
  file_name: 2024_Entropy_Edelsbrunner.pdf
  file_size: 8025139
  relation: main_file
  success: 1
file_date_updated: 2024-09-09T09:01:12Z
fulldoi: https://doi.org/10.3390/e26080637
has_accepted_license: '1'
intvolume: '        26'
isi: 1
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Entropy
publication_identifier:
  eissn:
  - 1099-4300
publication_status: published
publisher: MDPI
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://git.ista.ac.at/katharina.oelsboeck/wrap_2_3-public/
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Understanding higher-order interactions in information space
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 26
year: '2024'
...
---
_id: '15012'
abstract:
- lang: eng
  text: We solve a problem of Dujmović and Wood (2007) by showing that a complete
    convex geometric graph on n vertices cannot be decomposed into fewer than n-1
    star-forests, each consisting of noncrossing edges. This bound is clearly tight.
    We also discuss similar questions for abstract graphs.
acknowledgement: János Pach’s Research partially supported by European Research Council
  (ERC), grant “GeoScape” No. 882971 and by the Hungarian Science Foundation (NKFIH),
  grant K-131529. Work by Morteza Saghafian is partially supported by the European
  Research Council (ERC), grant No. 788183, and by the Wittgenstein Prize, Austrian
  Science Fund (FWF), grant No. Z 342-N31.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: János
  full_name: Pach, János
  id: E62E3130-B088-11EA-B919-BF823C25FEA4
  last_name: Pach
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
- first_name: Patrick
  full_name: Schnider, Patrick
  last_name: Schnider
citation:
  ama: 'Pach J, Saghafian M, Schnider P. Decomposition of geometric graphs into star-forests.
    In: <i>31st International Symposium on Graph Drawing and Network Visualization</i>.
    Vol 14465. Springer Nature; 2024:339-346. doi:<a href="https://doi.org/10.1007/978-3-031-49272-3_23">10.1007/978-3-031-49272-3_23</a>'
  apa: 'Pach, J., Saghafian, M., &#38; Schnider, P. (2024). Decomposition of geometric
    graphs into star-forests. In <i>31st International Symposium on Graph Drawing
    and Network Visualization</i> (Vol. 14465, pp. 339–346). Isola delle Femmine,
    Palermo, Italy: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-49272-3_23">https://doi.org/10.1007/978-3-031-49272-3_23</a>'
  chicago: Pach, János, Morteza Saghafian, and Patrick Schnider. “Decomposition of Geometric
    Graphs into Star-Forests.” In <i>31st International Symposium on Graph Drawing
    and Network Visualization</i>, 14465:339–46. Springer Nature, 2024. <a href="https://doi.org/10.1007/978-3-031-49272-3_23">https://doi.org/10.1007/978-3-031-49272-3_23</a>.
  ieee: J. Pach, M. Saghafian, and P. Schnider, “Decomposition of geometric graphs
    into star-forests,” in <i>31st International Symposium on Graph Drawing and Network
    Visualization</i>, Isola delle Femmine, Palermo, Italy, 2024, vol. 14465, pp.
    339–346.
  ista: 'Pach J, Saghafian M, Schnider P. 2024. Decomposition of geometric graphs
    into star-forests. 31st International Symposium on Graph Drawing and Network Visualization.
    GD: Graph Drawing and Network Visualization, LNCS, vol. 14465, 339–346.'
  mla: Pach, János, et al. “Decomposition of Geometric Graphs into Star-Forests.”
    <i>31st International Symposium on Graph Drawing and Network Visualization</i>,
    vol. 14465, Springer Nature, 2024, pp. 339–46, doi:<a href="https://doi.org/10.1007/978-3-031-49272-3_23">10.1007/978-3-031-49272-3_23</a>.
  short: J. Pach, M. Saghafian, P. Schnider, in:, 31st International Symposium on
    Graph Drawing and Network Visualization, Springer Nature, 2024, pp. 339–346.
conference:
  end_date: 2023-09-22
  location: Isola delle Femmine, Palermo, Italy
  name: 'GD: Graph Drawing and Network Visualization'
  start_date: 2023-09-20
das_tickbox: '0'
date_created: 2024-02-18T23:01:03Z
date_published: 2024-01-01T00:00:00Z
date_updated: 2026-10-02T11:50:59Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-031-49272-3_23
ec_funded: 1
external_id:
  arxiv:
  - '2306.13201'
  isi:
  - '001207939600023'
fulldoi: https://doi.org/10.1007/978-3-031-49272-3_23
intvolume: '     14465'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2306.13201
month: '01'
oa: 1
oa_version: Preprint
page: 339-346
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
publication: 31st International Symposium on Graph Drawing and Network Visualization
publication_identifier:
  eisbn:
  - '9783031492723'
  eissn:
  - 1611-3349
  isbn:
  - '9783031492716'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '21253'
    relation: later_version
    status: public
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Decomposition of geometric graphs into star-forests
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14465
year: '2024'
...
---
_id: '17190'
abstract:
- lang: eng
  text: "For a locally finite set, \U0001D434⊆ℝ\U0001D451\r\n, the \U0001D458\r\nth
    Brillouin zone of \U0001D44E∈\U0001D434\r\n is the region of points \U0001D465∈ℝ\U0001D451\r\n
    for which ‖\U0001D465−\U0001D44E‖\r\n is the \U0001D458\r\nth smallest among the
    Euclidean distances between \U0001D465\r\n and the points in \U0001D434\r\n. If
    \U0001D434\r\n is a lattice, the \U0001D458\r\nth Brillouin zones of the points
    in \U0001D434\r\n are translates of each other, and together they tile space.
    Depending on the value of \U0001D458\r\n, they express medium- or long-range order
    in the set. We study fundamental geometric and combinatorial properties of Brillouin
    zones, focusing on the integer lattice and its perturbations. Our results include
    the stability of a Brillouin zone under perturbations, a linear upper bound on
    the number of chambers in a zone for lattices in ℝ2\r\n, and the convergence of
    the maximum volume of a chamber to zero for the integer lattice."
acknowledgement: The second author is partially supported by the Alexander von Humboldt
  Foundation. The sixth author is supported by the European Union's Horizon 2020 research
  and innovation programme under Marie Sklodowska-Curie grant agreement 754411, and
  by Austrian Science Fund(FWF) grant M-3073. All other authors are supported by European
  Research Council (ERC) grant 788183, by the Wittgenstein Prize, by Austrian Science
  Fund (FWF) grant Z 342-N31, and by the DFG Collaborative Research Center TRR 109,
  Austrian Science Fund (FWF) grant I 02979-N35.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Alexey
  full_name: Garber, Alexey
  last_name: Garber
- first_name: Mohadese
  full_name: Ghafaris, Mohadese
  last_name: Ghafaris
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
- first_name: Morteza
  full_name: Saghafiant, Morteza
  last_name: Saghafiant
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Edelsbrunner H, Garber A, Ghafaris M, Heiss T, Saghafiant M, Wintraecken M.
    Brillouin zones of integer lattices and their perturbations. <i>SIAM Journal on
    Discrete Mathematics</i>. 2024;38(2):1784-1807. doi:<a href="https://doi.org/10.1137/22M1489071">10.1137/22M1489071</a>
  apa: Edelsbrunner, H., Garber, A., Ghafaris, M., Heiss, T., Saghafiant, M., &#38;
    Wintraecken, M. (2024). Brillouin zones of integer lattices and their perturbations.
    <i>SIAM Journal on Discrete Mathematics</i>. Society for Industrial and Applied
    Mathematics. <a href="https://doi.org/10.1137/22M1489071">https://doi.org/10.1137/22M1489071</a>
  chicago: Edelsbrunner, Herbert, Alexey Garber, Mohadese Ghafaris, Teresa Heiss,
    Morteza Saghafiant, and Mathijs Wintraecken. “Brillouin Zones of Integer Lattices
    and Their Perturbations.” <i>SIAM Journal on Discrete Mathematics</i>. Society
    for Industrial and Applied Mathematics, 2024. <a href="https://doi.org/10.1137/22M1489071">https://doi.org/10.1137/22M1489071</a>.
  ieee: H. Edelsbrunner, A. Garber, M. Ghafaris, T. Heiss, M. Saghafiant, and M. Wintraecken,
    “Brillouin zones of integer lattices and their perturbations,” <i>SIAM Journal
    on Discrete Mathematics</i>, vol. 38, no. 2. Society for Industrial and Applied
    Mathematics, pp. 1784–1807, 2024.
  ista: Edelsbrunner H, Garber A, Ghafaris M, Heiss T, Saghafiant M, Wintraecken M.
    2024. Brillouin zones of integer lattices and their perturbations. SIAM Journal
    on Discrete Mathematics. 38(2), 1784–1807.
  mla: Edelsbrunner, Herbert, et al. “Brillouin Zones of Integer Lattices and Their
    Perturbations.” <i>SIAM Journal on Discrete Mathematics</i>, vol. 38, no. 2, Society
    for Industrial and Applied Mathematics, 2024, pp. 1784–807, doi:<a href="https://doi.org/10.1137/22M1489071">10.1137/22M1489071</a>.
  short: H. Edelsbrunner, A. Garber, M. Ghafaris, T. Heiss, M. Saghafiant, M. Wintraecken,
    SIAM Journal on Discrete Mathematics 38 (2024) 1784–1807.
corr_author: '1'
das_tickbox: '0'
date_created: 2024-06-30T22:01:05Z
date_published: 2024-06-07T00:00:00Z
date_updated: 2026-10-02T11:49:10Z
day: '07'
department:
- _id: HeEd
doi: 10.1137/22M1489071
ec_funded: 1
external_id:
  arxiv:
  - '2204.01077'
  isi:
  - '001292728600001'
fulldoi: https://doi.org/10.1137/22M1489071
intvolume: '        38'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2204.01077
month: '06'
oa: 1
oa_version: Preprint
page: 1784-1807
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
publication: SIAM Journal on Discrete Mathematics
publication_identifier:
  issn:
  - 0895-4801
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Brillouin zones of integer lattices and their perturbations
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 38
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '18556'
abstract:
- lang: eng
  text: Given a finite set, A ⊆ ℝ², and a subset, B ⊆ A, the MST-ratio is the combined
    length of the minimum spanning trees of B and A⧵B divided by the length of the
    minimum spanning tree of A. The question of the supremum, over all sets A, of
    the maximum, over all subsets B, is related to the Steiner ratio, and we prove
    this sup-max is between 2.154 and 2.427. Restricting ourselves to 2-dimensional
    lattices, we prove that the sup-max is 2, while the inf-max is 1.25. By some margin
    the most difficult of these results is the upper bound for the inf-max, which
    we prove by showing that the hexagonal lattice cannot have MST-ratio larger than
    1.25.
acknowledgement: This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme,
  grant no. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), grant
  no. Z 342-N31, and from the DFG Collaborative Research Center TRR 109, "Discretization
  in Geometry and Dynamics", Austrian Science Fund (FWF), grant no. I 02979-N35.
alternative_title:
- LIPIcs
article_number: '3'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Sebastiano
  full_name: Cultrera di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera di Montesano
  orcid: 0000-0001-6249-0832
- first_name: Ondrej
  full_name: Draganov, Ondrej
  id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
  last_name: Draganov
  orcid: 0000-0003-0464-3823
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: 'Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. The Euclidean
    MST-ratio for bi-colored lattices. In: <i>32nd International Symposium on Graph
    Drawing and Network Visualization</i>. Vol 320. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.GD.2024.3">10.4230/LIPIcs.GD.2024.3</a>'
  apa: 'Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., &#38; Saghafian,
    M. (2024). The Euclidean MST-ratio for bi-colored lattices. In <i>32nd International
    Symposium on Graph Drawing and Network Visualization</i> (Vol. 320). Vienna, Austria:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.GD.2024.3">https://doi.org/10.4230/LIPIcs.GD.2024.3</a>'
  chicago: Cultrera di Montesano, Sebastiano, Ondrej Draganov, Herbert Edelsbrunner,
    and Morteza Saghafian. “The Euclidean MST-Ratio for Bi-Colored Lattices.” In <i>32nd
    International Symposium on Graph Drawing and Network Visualization</i>, Vol. 320.
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.GD.2024.3">https://doi.org/10.4230/LIPIcs.GD.2024.3</a>.
  ieee: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian,
    “The Euclidean MST-ratio for bi-colored lattices,” in <i>32nd International Symposium
    on Graph Drawing and Network Visualization</i>, Vienna, Austria, 2024, vol. 320.
  ista: 'Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. 2024. The
    Euclidean MST-ratio for bi-colored lattices. 32nd International Symposium on Graph
    Drawing and Network Visualization. GD: Graph Drawing and Network Visualization,
    LIPIcs, vol. 320, 3.'
  mla: Cultrera di Montesano, Sebastiano, et al. “The Euclidean MST-Ratio for Bi-Colored
    Lattices.” <i>32nd International Symposium on Graph Drawing and Network Visualization</i>,
    vol. 320, 3, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.GD.2024.3">10.4230/LIPIcs.GD.2024.3</a>.
  short: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, in:,
    32nd International Symposium on Graph Drawing and Network Visualization, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
  end_date: 2024-09-20
  location: Vienna, Austria
  name: 'GD: Graph Drawing and Network Visualization'
  start_date: 2024-09-18
corr_author: '1'
das_tickbox: '0'
date_created: 2024-11-17T23:01:47Z
date_published: 2024-10-28T00:00:00Z
date_updated: 2026-10-02T11:52:23Z
day: '28'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.GD.2024.3
ec_funded: 1
external_id:
  arxiv:
  - '2403.10204'
  isi:
  - '001540278400001'
file:
- access_level: open_access
  checksum: 5f9b35e115c3d375e99be78da9054cb4
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  creator: dernst
  date_created: 2024-11-18T07:49:25Z
  date_updated: 2024-11-18T07:49:25Z
  file_id: '18560'
  file_name: 2024_LIPIcs_CultreradiMontesano.pdf
  file_size: 908541
  relation: main_file
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file_date_updated: 2024-11-18T07:49:25Z
fulldoi: https://doi.org/10.4230/LIPIcs.GD.2024.3
has_accepted_license: '1'
intvolume: '       320'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: 32nd International Symposium on Graph Drawing and Network Visualization
publication_identifier:
  isbn:
  - '9783959773430'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: The Euclidean MST-ratio for bi-colored lattices
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 320
year: '2024'
...
---
_id: '18097'
abstract:
- lang: eng
  text: "In our companion paper \"Tight bounds for the learning of homotopy à la Niyogi,
    Smale, and Weinberger for subsets of Euclidean spaces and of Riemannian manifolds\"
    we gave optimal bounds (in terms of the two one-sided Hausdorff distances) on
    a sample P of an input shape \U0001D4AE (either manifold or general set with positive
    reach) such that one can infer the homotopy of \U0001D4AE from the union of balls
    with some radius centred at P, both in Euclidean space and in a Riemannian manifold
    of bounded curvature. The construction showing the optimality of the bounds is
    not straightforward. The purpose of this video is to visualize and thus elucidate
    said construction in the Euclidean setting."
acknowledgement: "This research has been supported by the European Research Council
  (ERC), grant No. 788183, by the Wittgenstein Prize, Austrian Science Fund (FWF),
  grant No. Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian
  Science Fund (FWF), grant No. I02979-N35. Mathijs Wintraecken: Supported by the
  European Union’s Horizon 2020 research and innovation programme under the Marie
  Skłodowska-Curie grant agreement No. 754411, the Austrian science fund (FWF) grant
  No. M-3073, and the welcome package from IDEX of the Université Côte d’Azur.\r\nWe
  thank Jean-Daniel Boissonnat, Herbert Edelsbrunner, and Mariette Yvinec for discussion."
alternative_title:
- LIPIcs
article_number: '87'
article_processing_charge: Yes
author:
- first_name: Dominique
  full_name: Attali, Dominique
  last_name: Attali
- first_name: Hana
  full_name: Kourimska, Hana
  id: D9B8E14C-3C26-11EA-98F5-1F833DDC885E
  last_name: Kourimska
  orcid: 0000-0001-7841-0091
- first_name: Christopher D
  full_name: Fillmore, Christopher D
  id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
  last_name: Fillmore
- first_name: Ishika
  full_name: Ghosh, Ishika
  id: ee449b28-344d-11ef-a6d5-9ca430e9e9ff
  last_name: Ghosh
- first_name: Andre
  full_name: Lieutier, Andre
  last_name: Lieutier
- first_name: Elizabeth R
  full_name: Stephenson, Elizabeth R
  id: 2D04F932-F248-11E8-B48F-1D18A9856A87
  last_name: Stephenson
  orcid: 0000-0002-6862-208X
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: 'Attali D, Kourimska H, Fillmore CD, et al. The ultimate frontier: An optimality
    construction for homotopy inference (media exposition). In: <i>40th International
    Symposium on Computational Geometry</i>. Vol 293. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">10.4230/LIPIcs.SoCG.2024.87</a>'
  apa: 'Attali, D., Kourimska, H., Fillmore, C. D., Ghosh, I., Lieutier, A., Stephenson,
    E. R., &#38; Wintraecken, M. (2024). The ultimate frontier: An optimality construction
    for homotopy inference (media exposition). In <i>40th International Symposium
    on Computational Geometry</i> (Vol. 293). Athens, Greece: Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">https://doi.org/10.4230/LIPIcs.SoCG.2024.87</a>'
  chicago: 'Attali, Dominique, Hana Kourimska, Christopher D Fillmore, Ishika Ghosh,
    Andre Lieutier, Elizabeth R Stephenson, and Mathijs Wintraecken. “The Ultimate
    Frontier: An Optimality Construction for Homotopy Inference (Media Exposition).”
    In <i>40th International Symposium on Computational Geometry</i>, Vol. 293. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">https://doi.org/10.4230/LIPIcs.SoCG.2024.87</a>.'
  ieee: 'D. Attali <i>et al.</i>, “The ultimate frontier: An optimality construction
    for homotopy inference (media exposition),” in <i>40th International Symposium
    on Computational Geometry</i>, Athens, Greece, 2024, vol. 293.'
  ista: 'Attali D, Kourimska H, Fillmore CD, Ghosh I, Lieutier A, Stephenson ER, Wintraecken
    M. 2024. The ultimate frontier: An optimality construction for homotopy inference
    (media exposition). 40th International Symposium on Computational Geometry. SoCG:
    Symposium on Computational Geometry, LIPIcs, vol. 293, 87.'
  mla: 'Attali, Dominique, et al. “The Ultimate Frontier: An Optimality Construction
    for Homotopy Inference (Media Exposition).” <i>40th International Symposium on
    Computational Geometry</i>, vol. 293, 87, Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">10.4230/LIPIcs.SoCG.2024.87</a>.'
  short: D. Attali, H. Kourimska, C.D. Fillmore, I. Ghosh, A. Lieutier, E.R. Stephenson,
    M. Wintraecken, in:, 40th International Symposium on Computational Geometry, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
  end_date: 2024-06-14
  location: Athens, Greece
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2024-06-11
corr_author: '1'
das_tickbox: '0'
date_created: 2024-09-19T10:29:48Z
date_published: 2024-06-06T00:00:00Z
date_updated: 2026-10-02T11:51:50Z
day: '06'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.87
ec_funded: 1
file:
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  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-19T10:30:37Z
  date_updated: 2024-09-19T10:30:37Z
  file_id: '18098'
  file_name: 2024_LIPICs_Attali.pdf
  file_size: 3507177
  relation: main_file
  success: 1
file_date_updated: 2024-09-19T10:30:37Z
fulldoi: https://doi.org/10.4230/LIPIcs.SoCG.2024.87
has_accepted_license: '1'
intvolume: '       293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: 40th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - '9783959773164'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
researchdata_availability: no
status: public
supplementarymaterial: yes
title: 'The ultimate frontier: An optimality construction for homotopy inference (media
  exposition)'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 293
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '13182'
abstract:
- lang: eng
  text: "We characterize critical points of 1-dimensional maps paired in persistent
    homology\r\ngeometrically and this way get elementary proofs of theorems about
    the symmetry\r\nof persistence diagrams and the variation of such maps. In particular,
    we identify\r\nbranching points and endpoints of networks as the sole source of
    asymmetry and\r\nrelate the cycle basis in persistent homology with a version
    of the stable marriage\r\nproblem. Our analysis provides the foundations of fast
    algorithms for maintaining a\r\ncollection of sorted lists together with its persistence
    diagram."
acknowledgement: Open access funding provided by Austrian Science Fund (FWF). This
  project has received funding from the European Research Council (ERC) under the
  European Union’s Horizon 2020 research and innovation programme, grant no. 788183,
  from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and
  from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry
  and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35. The authors of
  this paper thank anonymous reviewers for their constructive criticism and Monika
  Henzinger for detailed comments on an earlier version of this paper.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Sebastiano
  full_name: Cultrera Di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera Di Montesano
  orcid: 0000-0001-6249-0832
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. Geometric characterization
    of the persistence of 1D maps. <i>Journal of Applied and Computational Topology</i>.
    2024;8:1101-1119. doi:<a href="https://doi.org/10.1007/s41468-023-00126-9">10.1007/s41468-023-00126-9</a>
  apa: Biswas, R., Cultrera di Montesano, S., Edelsbrunner, H., &#38; Saghafian, M.
    (2024). Geometric characterization of the persistence of 1D maps. <i>Journal of
    Applied and Computational Topology</i>. Springer Nature. <a href="https://doi.org/10.1007/s41468-023-00126-9">https://doi.org/10.1007/s41468-023-00126-9</a>
  chicago: Biswas, Ranita, Sebastiano Cultrera di Montesano, Herbert Edelsbrunner,
    and Morteza Saghafian. “Geometric Characterization of the Persistence of 1D Maps.”
    <i>Journal of Applied and Computational Topology</i>. Springer Nature, 2024. <a
    href="https://doi.org/10.1007/s41468-023-00126-9">https://doi.org/10.1007/s41468-023-00126-9</a>.
  ieee: R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, and M. Saghafian, “Geometric
    characterization of the persistence of 1D maps,” <i>Journal of Applied and Computational
    Topology</i>, vol. 8. Springer Nature, pp. 1101–1119, 2024.
  ista: Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. 2024. Geometric
    characterization of the persistence of 1D maps. Journal of Applied and Computational
    Topology. 8, 1101–1119.
  mla: Biswas, Ranita, et al. “Geometric Characterization of the Persistence of 1D
    Maps.” <i>Journal of Applied and Computational Topology</i>, vol. 8, Springer
    Nature, 2024, pp. 1101–19, doi:<a href="https://doi.org/10.1007/s41468-023-00126-9">10.1007/s41468-023-00126-9</a>.
  short: R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Journal
    of Applied and Computational Topology 8 (2024) 1101–1119.
corr_author: '1'
das_tickbox: '0'
date_created: 2023-07-02T22:00:44Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2026-10-02T11:52:56Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1007/s41468-023-00126-9
ec_funded: 1
external_id:
  pmid:
  - '39678706'
file:
- access_level: open_access
  checksum: d493df5088c222b88d9ca46b623ad0ee
  content_type: application/pdf
  creator: dernst
  date_created: 2025-01-09T07:39:41Z
  date_updated: 2025-01-09T07:39:41Z
  file_id: '18783'
  file_name: 2024_JourApplCompTopo_Biswas.pdf
  file_size: 476896
  relation: main_file
  success: 1
file_date_updated: 2025-01-09T07:39:41Z
fulldoi: https://doi.org/10.1007/s41468-023-00126-9
has_accepted_license: '1'
intvolume: '         8'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1101-1119
pmid: 1
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 0aa4bc98-070f-11eb-9043-e6fff9c6a316
  grant_number: I4887
  name: Persistent Homology, Algorithms and Stochastic Geometry
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
publication: Journal of Applied and Computational Topology
publication_identifier:
  eissn:
  - 2367-1734
  issn:
  - 2367-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '11660'
    relation: earlier_version
    status: public
  - id: '15094'
    relation: dissertation_contains
    status: public
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Geometric characterization of the persistence of 1D maps
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '15380'
abstract:
- lang: eng
  text: The depth of a cell in an arrangement of n (non-vertical) great-spheres in
    Sd is the number of great-spheres that pass above the cell. We prove Euler-type
    relations, which imply extensions of the classic Dehn–Sommerville relations for
    convex polytopes to sublevel sets of the depth function, and we use the relations
    to extend the expressions for the number of faces of neighborly polytopes to the
    number of cells of levels in neighborly arrangements.
acknowledgement: "The authors thank Uli Wagner and Emo Welzl for comments on an earlier
  version of this paper, and for pointing out related work in the prior literature.\r\nOpen
  access funding provided by Institute of Science and Technology (IST Austria). This
  project has received funding from the European Research Council (ERC) under the
  European Union’s Horizon 2020 research and innovation programme, Grant No. 788183,
  from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and
  from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry
  and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Sebastiano
  full_name: Cultrera Di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera Di Montesano
  orcid: 0000-0001-6249-0832
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: 'Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. Depth in arrangements:
    Dehn–Sommerville–Euler relations with applications. <i>Journal of Applied and
    Computational Topology</i>. 2024;8:557-578. doi:<a href="https://doi.org/10.1007/s41468-024-00173-w">10.1007/s41468-024-00173-w</a>'
  apa: 'Biswas, R., Cultrera di Montesano, S., Edelsbrunner, H., &#38; Saghafian,
    M. (2024). Depth in arrangements: Dehn–Sommerville–Euler relations with applications.
    <i>Journal of Applied and Computational Topology</i>. Springer Nature. <a href="https://doi.org/10.1007/s41468-024-00173-w">https://doi.org/10.1007/s41468-024-00173-w</a>'
  chicago: 'Biswas, Ranita, Sebastiano Cultrera di Montesano, Herbert Edelsbrunner,
    and Morteza Saghafian. “Depth in Arrangements: Dehn–Sommerville–Euler Relations
    with Applications.” <i>Journal of Applied and Computational Topology</i>. Springer
    Nature, 2024. <a href="https://doi.org/10.1007/s41468-024-00173-w">https://doi.org/10.1007/s41468-024-00173-w</a>.'
  ieee: 'R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, and M. Saghafian, “Depth
    in arrangements: Dehn–Sommerville–Euler relations with applications,” <i>Journal
    of Applied and Computational Topology</i>, vol. 8. Springer Nature, pp. 557–578,
    2024.'
  ista: 'Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. 2024. Depth
    in arrangements: Dehn–Sommerville–Euler relations with applications. Journal of
    Applied and Computational Topology. 8, 557–578.'
  mla: 'Biswas, Ranita, et al. “Depth in Arrangements: Dehn–Sommerville–Euler Relations
    with Applications.” <i>Journal of Applied and Computational Topology</i>, vol.
    8, Springer Nature, 2024, pp. 557–78, doi:<a href="https://doi.org/10.1007/s41468-024-00173-w">10.1007/s41468-024-00173-w</a>.'
  short: R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Journal
    of Applied and Computational Topology 8 (2024) 557–578.
corr_author: '1'
das_tickbox: '0'
date_created: 2024-05-12T22:01:03Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2026-10-02T11:55:12Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s41468-024-00173-w
ec_funded: 1
external_id:
  pmid:
  - '39308789'
file:
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  name: Mathematics, Computer Science
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  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Journal of Applied and Computational Topology
publication_identifier:
  eissn:
  - 2367-1734
  issn:
  - 2367-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
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title: 'Depth in arrangements: Dehn–Sommerville–Euler relations with applications'
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...
---
OA_place: publisher
OA_type: hybrid
_id: '15247'
abstract:
- lang: eng
  text: Extending the notion of sunflowers, we call a family of at least two sets
    an odd-sunflower if every element of the underlying set is contained in an odd
    number of sets or in none of them. It follows from the Erdős–Szemerédi conjecture,
    recently proved by Naslund and Sawin, that there is a constant <2 such that every
    family of subsets of an n-element set that contains no odd-sunflower consists
    of at most n sets. We construct such families of size at least 1.5021n. We also
    characterize minimal odd-sunflowers of triples.
acknowledgement: We are grateful to Balázs Keszegh, and to the members of the Miklós
  Schweitzer Competition committee of 2022 for valuable discussions, and Shira Zerbib
  for pointing out several important mathematical typos.
article_number: '105889'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Peter
  full_name: Frankl, Peter
  last_name: Frankl
- first_name: János
  full_name: Pach, János
  id: E62E3130-B088-11EA-B919-BF823C25FEA4
  last_name: Pach
- first_name: Dömötör
  full_name: Pálvölgyi, Dömötör
  last_name: Pálvölgyi
citation:
  ama: Frankl P, Pach J, Pálvölgyi D. Odd-sunflowers. <i>Journal of Combinatorial
    Theory, Series A</i>. 2024;206(8). doi:<a href="https://doi.org/10.1016/j.jcta.2024.105889">10.1016/j.jcta.2024.105889</a>
  apa: Frankl, P., Pach, J., &#38; Pálvölgyi, D. (2024). Odd-sunflowers. <i>Journal
    of Combinatorial Theory, Series A</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcta.2024.105889">https://doi.org/10.1016/j.jcta.2024.105889</a>
  chicago: Frankl, Peter, János Pach, and Dömötör Pálvölgyi. “Odd-Sunflowers.” <i>Journal
    of Combinatorial Theory, Series A</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.jcta.2024.105889">https://doi.org/10.1016/j.jcta.2024.105889</a>.
  ieee: P. Frankl, J. Pach, and D. Pálvölgyi, “Odd-sunflowers,” <i>Journal of Combinatorial
    Theory, Series A</i>, vol. 206, no. 8. Elsevier, 2024.
  ista: Frankl P, Pach J, Pálvölgyi D. 2024. Odd-sunflowers. Journal of Combinatorial
    Theory, Series A. 206(8), 105889.
  mla: Frankl, Peter, et al. “Odd-Sunflowers.” <i>Journal of Combinatorial Theory,
    Series A</i>, vol. 206, no. 8, 105889, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.jcta.2024.105889">10.1016/j.jcta.2024.105889</a>.
  short: P. Frankl, J. Pach, D. Pálvölgyi, Journal of Combinatorial Theory, Series
    A 206 (2024).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: No data was used for the research described in the article.
date_created: 2024-03-31T22:01:11Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2026-10-02T11:54:47Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1016/j.jcta.2024.105889
external_id:
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  - '2310.16701'
  isi:
  - '001217739200001'
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intvolume: '       206'
isi: 1
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: Journal of Combinatorial Theory, Series A
publication_identifier:
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  issn:
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publisher: Elsevier
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supplementarymaterial: yes
title: Odd-sunflowers
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...
---
OA_place: publisher
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abstract:
- lang: eng
  text: "Many chemical and physical properties of materials are determined by the
    material’s shape,\r\nfor example the size of its pores and the width of its tunnels.
    This makes materials science\r\na prime application area for geometrical and topological
    methods. Nevertheless many\r\nmethods in topological data analysis have not been
    satisfyingly extended to the needs of\r\nmaterials science. This thesis provides
    new methods and new mathematical theorems\r\ntargeted at those specific needs
    by answering four different research questions. While the\r\nmotivation for each
    of the research questions arises from materials science, the methods\r\nare versatile
    and can be applied in different areas as well. \r\n\r\nThe first research question
    is concerned with image data, for example a three-dimensional\r\ncomputed tomography
    (CT) scan of a material, like sand or stone. There are two commonly\r\nused topologies
    for digital images and depending on the application either of them might be\r\nrequired.
    However, software for computing the topological data analysis method persistence\r\nhomology,
    usually supports only one of the two topologies. We answer the question how to\r\ncompute
    persistent homology of an image with respect to one of the two topologies using\r\nsoftware
    that is intended for the other topology. \r\n\r\nThe second research question
    is concerned with image data as well, and asks how much\r\nof the topological
    information of an image is lost when the resolution is coarsened. As\r\ncomputer
    tomography scanners are more expensive the higher the resolution, it is an\r\nimportant
    question in materials science to know which resolution is enough to get satisfying\r\npersistent
    homology. We give theoretical bounds on the information loss based on different\r\ngeometrical
    properties of the object to be scanned. In addition, we conduct experiments on\r\nsand
    and stone CT image data. \r\n\r\nThe third research question is motivated by comparing
    crystalline materials efficiently. As\r\nthe atoms within a crystal repeat periodically,
    crystalline materials are either modeled by\r\nunmanageable infinite periodic
    point sets, or by one of their fundamental domains, which is\r\nunstable under
    perturbation. Therefore a fingerprint of crystalline materials is needed, with\r\nappropriate
    properties such that comparing the crystals can be eased by comparing the\r\nfingerprints
    instead. We define the density fingerprint and prove the necessary properties.
    \r\n\r\nThe fourth research question is motivated by studying the hole-structure
    or connectedness,\r\ni.e. persistent homology or merge trees, of crystalline materials.
    A common way to deal\r\nwith periodicity is to take a fundamental domain and identify
    opposite boundaries to form a\r\ntorus. However, computing persistent homology
    or merge trees on that torus loses some\r\nof the information materials scientists
    are interested in and is additionally not stable under\r\ncertain noise. We therefore
    decorate the merge tree stemming from the torus with additional\r\ninformation
    describing the density and growth rate of the periodic copies of a component\r\nwithin
    a growing spherical window. We prove all desired properties, like stability and
    efficient\r\ncomputability."
acknowledgement: "I was supported by the European Research Council (ERC) Horizon 2020
  project\r\n“Alpha Shape Theory Extended” No. 788183 and by the Pöttinger Scholarship.
  In addition,\r\nI am very thankful for having been able to attend the second Workshop
  for Women in\r\nComputational Topology in July 2019, funded by the Mathematical
  Sciences Institute at\r\nANU, the US National Science Foundation through the award
  CCF-1841455, the Australian\r\nMathematical Sciences Institute and the Association
  for Women in Mathematics. Two of the\r\nprojects presented in this thesis started
  there. One of them reached completion thanks to\r\nfunding from the MSRI Summer
  Research in Mathematics program awarded to me and my\r\ncollaborators in 2020."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
citation:
  ama: Heiss T. New methods for applying topological data analysis to materials science.
    2024. doi:<a href="https://doi.org/10.15479/at:ista:18667">10.15479/at:ista:18667</a>
  apa: Heiss, T. (2024). <i>New methods for applying topological data analysis to
    materials science</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:18667">https://doi.org/10.15479/at:ista:18667</a>
  chicago: Heiss, Teresa. “New Methods for Applying Topological Data Analysis to Materials
    Science.” Institute of Science and Technology Austria, 2024. <a href="https://doi.org/10.15479/at:ista:18667">https://doi.org/10.15479/at:ista:18667</a>.
  ieee: T. Heiss, “New methods for applying topological data analysis to materials
    science,” Institute of Science and Technology Austria, 2024.
  ista: Heiss T. 2024. New methods for applying topological data analysis to materials
    science. Institute of Science and Technology Austria.
  mla: Heiss, Teresa. <i>New Methods for Applying Topological Data Analysis to Materials
    Science</i>. Institute of Science and Technology Austria, 2024, doi:<a href="https://doi.org/10.15479/at:ista:18667">10.15479/at:ista:18667</a>.
  short: T. Heiss, New Methods for Applying Topological Data Analysis to Materials
    Science, Institute of Science and Technology Austria, 2024.
corr_author: '1'
das_tickbox: '0'
date_created: 2024-12-17T16:17:55Z
date_published: 2024-12-17T00:00:00Z
date_updated: 2026-10-02T11:55:42Z
day: '17'
ddc:
- '514'
- '516'
- '004'
degree_awarded: PhD
department:
- _id: GradSch
- _id: HeEd
doi: 10.15479/at:ista:18667
doi_confirm: '1'
ec_funded: 1
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fulldoi: https://doi.org/10.15479/at:ista:18667
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keyword:
- persistent homology
- topological data analysis
- periodic
- crystalline materials
- images
- fingerprint
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '111'
project:
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  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
publication_identifier:
  isbn:
  - 978-3-99078-052-7
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
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    relation: part_of_dissertation
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  - id: '18673'
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researchdata_availability: no
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supervisor:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
supplementarymaterial: no
title: New methods for applying topological data analysis to materials science
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type: dissertation
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
OA_place: publisher
_id: '15094'
abstract:
- lang: eng
  text: "Point sets, geometric networks, and arrangements of hyperplanes are fundamental
    objects in\r\ndiscrete geometry that have captivated mathematicians for centuries,
    if not millennia. This\r\nthesis seeks to cast new light on these structures by
    illustrating specific instances where a\r\ntopological perspective, specifically
    through discrete Morse theory and persistent homology,\r\nprovides valuable insights.\r\n\r\nAt
    first glance, the topology of these geometric objects might seem uneventful: point
    sets\r\nessentially lack of topology, arrangements of hyperplanes are a decomposition
    of Rd, which\r\nis a contractible space, and the topology of a network primarily
    involves the enumeration\r\nof connected components and cycles within the network.
    However, beneath this apparent\r\nsimplicity, there lies an array of intriguing
    structures, a small subset of which will be uncovered\r\nin this thesis.\r\n\r\nFocused
    on three case studies, each addressing one of the mentioned objects, this work\r\nwill
    showcase connections that intertwine topology with diverse fields such as combinatorial\r\ngeometry,
    algorithms and data structures, and emerging applications like spatial biology.\r\n\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Sebastiano
  full_name: Cultrera di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera di Montesano
  orcid: 0000-0001-6249-0832
citation:
  ama: Cultrera di Montesano S. Persistence and Morse theory for discrete geometric
    structures. 2024. doi:<a href="https://doi.org/10.15479/at:ista:15094">10.15479/at:ista:15094</a>
  apa: Cultrera di Montesano, S. (2024). <i>Persistence and Morse theory for discrete
    geometric structures</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:15094">https://doi.org/10.15479/at:ista:15094</a>
  chicago: Cultrera di Montesano, Sebastiano. “Persistence and Morse Theory for Discrete
    Geometric Structures.” Institute of Science and Technology Austria, 2024. <a href="https://doi.org/10.15479/at:ista:15094">https://doi.org/10.15479/at:ista:15094</a>.
  ieee: S. Cultrera di Montesano, “Persistence and Morse theory for discrete geometric
    structures,” Institute of Science and Technology Austria, 2024.
  ista: Cultrera di Montesano S. 2024. Persistence and Morse theory for discrete geometric
    structures. Institute of Science and Technology Austria.
  mla: Cultrera di Montesano, Sebastiano. <i>Persistence and Morse Theory for Discrete
    Geometric Structures</i>. Institute of Science and Technology Austria, 2024, doi:<a
    href="https://doi.org/10.15479/at:ista:15094">10.15479/at:ista:15094</a>.
  short: S. Cultrera di Montesano, Persistence and Morse Theory for Discrete Geometric
    Structures, Institute of Science and Technology Austria, 2024.
corr_author: '1'
das_tickbox: '0'
date_created: 2024-03-08T15:28:10Z
date_published: 2024-03-08T00:00:00Z
date_updated: 2026-10-02T11:57:31Z
day: '08'
ddc:
- '514'
- '500'
- '516'
degree_awarded: PhD
department:
- _id: GradSch
- _id: HeEd
doi: 10.15479/at:ista:15094
doi_confirm: '1'
ec_funded: 1
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month: '03'
oa: 1
oa_version: Published Version
page: '108'
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 0aa4bc98-070f-11eb-9043-e6fff9c6a316
  grant_number: I4887
  name: Persistent Homology, Algorithms and Stochastic Geometry
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
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    relation: part_of_dissertation
    status: public
  - id: '13182'
    relation: part_of_dissertation
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    relation: part_of_dissertation
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  - id: '15093'
    relation: part_of_dissertation
    status: public
researchdata_availability: no
status: public
supervisor:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
supplementarymaterial: no
title: Persistence and Morse theory for discrete geometric structures
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  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
_id: '15093'
abstract:
- lang: eng
  text: We present a dynamic data structure for maintaining the persistent homology
    of a time series of real numbers. The data structure supports local operations,
    including the insertion and deletion of an item and the cutting and concatenating
    of lists, each in time O(log n + k), in which n counts the critical items and
    k the changes in the augmented persistence diagram. To achieve this, we design
    a tailor-made tree structure with an unconventional representation, referred to
    as banana tree, which may be useful in its own right.
acknowledgement: The  first  and  second  authors  are  funded  by  the  European  Research  Council  under  the
  European Union’s Horizon 2020 research and innovation programme, ERC grant no. 788183,“Alpha
  Shape Theory Extended (Alpha)”, by the Wittgenstein Prize, FWF grant no. Z 342-N31,
  and by the DFG Collaborative Research Center TRR 109, FWF grant no. I 02979-N35.The
  third author received funding by the European Research Council under the European
  Union’s Horizon 2020research  and  innovation  programme,  ERC  grant  no.  101019564,  “The  Design  of  Modern  Fully  Dynamic  DataStructures
  (MoDynStruct)”, and by the Austrian Science Fund through the Wittgenstein Prize
  with FWF grant no. Z 422-N, and also by FWF grant no. I 5982-N, and by FWF grant
  no. P 33775-N, with additional funding from the netidee SCIENCE Stiftung, 2020–2024.  The
  fourth author is funded by the Vienna Graduate School on Computational Optimization,
  FWF project no. W1260-N35.
article_processing_charge: No
arxiv: 1
author:
- first_name: Sebastiano
  full_name: Cultrera di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera di Montesano
  orcid: 0000-0001-6249-0832
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Lara
  full_name: Ost, Lara
  last_name: Ost
citation:
  ama: 'Cultrera di Montesano S, Edelsbrunner H, Henzinger M, Ost L. Dynamically maintaining
    the persistent homology of time series. In: Woodruff DP, ed. <i>Proceedings of
    the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms (SODA)</i>. Society
    for Industrial and Applied Mathematics; 2024:243-295. doi:<a href="https://doi.org/10.1137/1.9781611977912.11">10.1137/1.9781611977912.11</a>'
  apa: 'Cultrera di Montesano, S., Edelsbrunner, H., Henzinger, M., &#38; Ost, L.
    (2024). Dynamically maintaining the persistent homology of time series. In D.
    P. Woodruff (Ed.), <i>Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete
    Algorithms (SODA)</i> (pp. 243–295). Alexandria, VA, USA: Society for Industrial
    and Applied Mathematics. <a href="https://doi.org/10.1137/1.9781611977912.11">https://doi.org/10.1137/1.9781611977912.11</a>'
  chicago: Cultrera di Montesano, Sebastiano, Herbert Edelsbrunner, Monika Henzinger,
    and Lara Ost. “Dynamically Maintaining the Persistent Homology of Time Series.”
    In <i>Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms
    (SODA)</i>, edited by David P. Woodruff, 243–95. Society for Industrial and Applied
    Mathematics, 2024. <a href="https://doi.org/10.1137/1.9781611977912.11">https://doi.org/10.1137/1.9781611977912.11</a>.
  ieee: S. Cultrera di Montesano, H. Edelsbrunner, M. Henzinger, and L. Ost, “Dynamically
    maintaining the persistent homology of time series,” in <i>Proceedings of the
    2024 Annual ACM-SIAM Symposium on Discrete Algorithms (SODA)</i>, Alexandria,
    VA, USA, 2024, pp. 243–295.
  ista: 'Cultrera di Montesano S, Edelsbrunner H, Henzinger M, Ost L. 2024. Dynamically
    maintaining the persistent homology of time series. Proceedings of the 2024 Annual
    ACM-SIAM Symposium on Discrete Algorithms (SODA). SODA: Symposium on Discrete
    Algorithms, 243–295.'
  mla: Cultrera di Montesano, Sebastiano, et al. “Dynamically Maintaining the Persistent
    Homology of Time Series.” <i>Proceedings of the 2024 Annual ACM-SIAM Symposium
    on Discrete Algorithms (SODA)</i>, edited by David P. Woodruff, Society for Industrial
    and Applied Mathematics, 2024, pp. 243–95, doi:<a href="https://doi.org/10.1137/1.9781611977912.11">10.1137/1.9781611977912.11</a>.
  short: S. Cultrera di Montesano, H. Edelsbrunner, M. Henzinger, L. Ost, in:, D.P.
    Woodruff (Ed.), Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete
    Algorithms (SODA), Society for Industrial and Applied Mathematics, 2024, pp. 243–295.
conference:
  end_date: 2024-01-10
  location: Alexandria, VA, USA
  name: 'SODA: Symposium on Discrete Algorithms'
  start_date: 2024-01-07
corr_author: '1'
das_tickbox: '0'
date_created: 2024-03-08T10:27:39Z
date_published: 2024-01-04T00:00:00Z
date_updated: 2026-10-02T11:57:32Z
day: '04'
department:
- _id: HeEd
- _id: MoHe
doi: 10.1137/1.9781611977912.11
ec_funded: 1
editor:
- first_name: David P.
  full_name: Woodruff, David P.
  last_name: Woodruff
external_id:
  arxiv:
  - '2311.01115'
fulldoi: https://doi.org/10.1137/1.9781611977912.11
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2311.01115
month: '01'
oa: 1
oa_version: Preprint
page: 243 - 295
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
  grant_number: Z00422
  name: Efficient algorithms
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
  grant_number: P33775
  name: Fast Algorithms for a Reactive Network Layer
publication: Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms
  (SODA)
publication_identifier:
  eisbn:
  - '9781611977912'
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
related_material:
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  - id: '15094'
    relation: dissertation_contains
    status: public
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Dynamically maintaining the persistent homology of time series
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
OA_place: repository
_id: '18981'
abstract:
- lang: eng
  text: We establish several results combining discrete Morse theory and microlocal
    sheaf theory in the setting of finite posets and simplicial complexes. Our primary
    tool is a computationally tractable description of the bounded derived category
    of sheaves on a poset with the Alexandrov topology. We prove that each bounded
    complex of sheaves on a finite poset admits a unique (up to isomorphism of complexes)
    minimal injective resolution, and we provide algorithms for computing minimal
    injective resolution of an injective complex, as well as several useful functors
    between derived categories of sheaves. For the constant sheaf on a simplicial
    complex, we give asymptotically tight bounds on the complexity of computing the
    minimal injective resolution using those algorithms. Our main result is a novel
    definition of the discrete microsupport of a bounded complex of sheaves on a finite
    poset. We detail several foundational properties of the discrete microsupport,
    as well as a microlocal generalization of the discrete homological Morse theorem
    and Morse inequalities.
acknowledgement: "This project has received funding from the European Research Council
  (ERC) under the European\r\nUnion’s Horizon 2020 research and innovation programme,
  grant no. 788183, from the Wittgenstein Prize,\r\nAustrian Science Fund (FWF), grant
  no. Z 342-N31, and from the DFG Collaborative Research Center TRR\r\n109, ‘Discretization
  in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35."
article_processing_charge: No
arxiv: 1
author:
- first_name: Adam
  full_name: Brown, Adam
  last_name: Brown
- first_name: Ondrej
  full_name: Draganov, Ondrej
  id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
  last_name: Draganov
  orcid: 0000-0003-0464-3823
citation:
  ama: Brown A, Draganov O. Discrete microlocal Morse theory. <i>arXiv</i>. doi:<a
    href="https://doi.org/10.48550/arXiv.2209.14993">10.48550/arXiv.2209.14993</a>
  apa: Brown, A., &#38; Draganov, O. (n.d.). Discrete microlocal Morse theory. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/arXiv.2209.14993">https://doi.org/10.48550/arXiv.2209.14993</a>
  chicago: Brown, Adam, and Ondrej Draganov. “Discrete Microlocal Morse Theory.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2209.14993">https://doi.org/10.48550/arXiv.2209.14993</a>.
  ieee: A. Brown and O. Draganov, “Discrete microlocal Morse theory,” <i>arXiv</i>.
    .
  ista: Brown A, Draganov O. Discrete microlocal Morse theory. arXiv, <a href="https://doi.org/10.48550/arXiv.2209.14993">10.48550/arXiv.2209.14993</a>.
  mla: Brown, Adam, and Ondrej Draganov. “Discrete Microlocal Morse Theory.” <i>ArXiv</i>,
    doi:<a href="https://doi.org/10.48550/arXiv.2209.14993">10.48550/arXiv.2209.14993</a>.
  short: A. Brown, O. Draganov, ArXiv (n.d.).
corr_author: '1'
das_tickbox: '0'
date_created: 2025-01-31T17:03:04Z
date_published: 2024-06-09T00:00:00Z
date_updated: 2026-10-02T11:57:00Z
day: '09'
department:
- _id: HeEd
doi: 10.48550/arXiv.2209.14993
ec_funded: 1
external_id:
  arxiv:
  - '2209.14993'
fulldoi: https://doi.org/10.48550/arXiv.2209.14993
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2209.14993
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '20323'
    relation: later_version
    status: public
  - id: '18979'
    relation: dissertation_contains
    status: public
researchdata_availability: no
status: public
supplementarymaterial: no
title: Discrete microlocal Morse theory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
OA_place: repository
_id: '18673'
abstract:
- lang: eng
  text: "Motivated by applications to crystalline materials, we generalize the merge
    tree and the related barcode of a filtered complex to the periodic setting in
    Euclidean space. They are invariant under isometries, changing bases, and indeed
    changing lattices. In addition, we prove stability under perturbations and provide
    an algorithm that under mild geometric conditions typically satisfied by crystalline
    materials takes O((n+m)logn) time, in which n and m are the numbers of vertices
    and edges in the quotient complex, respectively.\r\n"
acknowledgement: "Both authors are partially supported by the European Research Council
  (ERC) Horizon 2020 project\r\n‘Alpha Shape Theory Extended’, grant no. 788183. The
  first author is also partially supported by the DFG\r\nCollaborative Research Center
  TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund\r\n(FWF),
  grant no. I 02979-N35."
article_processing_charge: No
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
citation:
  ama: Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>
  apa: Edelsbrunner, H., &#38; Heiss, T. (n.d.). Merge trees of periodic filtrations.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2408.16575">https://doi.org/10.48550/arXiv.2408.16575</a>
  chicago: Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.”
    <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2408.16575">https://doi.org/10.48550/arXiv.2408.16575</a>.
  ieee: H. Edelsbrunner and T. Heiss, “Merge trees of periodic filtrations,” <i>arXiv</i>.
    .
  ista: Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. arXiv, <a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>.
  mla: Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.”
    <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>.
  short: H. Edelsbrunner, T. Heiss, ArXiv (n.d.).
corr_author: '1'
das_tickbox: '0'
date_created: 2024-12-18T14:06:57Z
date_published: 2024-08-29T00:00:00Z
date_updated: 2026-10-02T11:55:43Z
day: '29'
department:
- _id: HeEd
doi: 10.48550/arXiv.2408.16575
ec_funded: 1
external_id:
  arxiv:
  - '2408.16575'
fulldoi: https://doi.org/10.48550/arXiv.2408.16575
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2408.16575
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '18667'
    relation: dissertation_contains
    status: public
researchdata_availability: no
status: public
supplementarymaterial: no
title: Merge trees of periodic filtrations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
OA_place: repository
_id: '15091'
abstract:
- lang: eng
  text: "Motivated by applications in the medical sciences, we study finite chromatic\r\nsets
    in Euclidean space from a topological perspective. Based on the persistent\r\nhomology
    for images, kernels and cokernels, we design provably stable\r\nhomological quantifiers
    that describe the geometric micro- and macro-structure\r\nof how the color classes
    mingle. These can be efficiently computed using\r\nchromatic variants of Delaunay
    and alpha complexes, and code that does these\r\ncomputations is provided."
article_number: '2212.03128'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sebastiano
  full_name: Cultrera di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera di Montesano
  orcid: 0000-0001-6249-0832
- first_name: Ondrej
  full_name: Draganov, Ondrej
  id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
  last_name: Draganov
  orcid: 0000-0003-0464-3823
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic
    alpha complexes. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2212.03128">10.48550/arXiv.2212.03128</a>
  apa: Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., &#38; Saghafian,
    M. (n.d.). Chromatic alpha complexes. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2212.03128">https://doi.org/10.48550/arXiv.2212.03128</a>
  chicago: Cultrera di Montesano, Sebastiano, Ondrej Draganov, Herbert Edelsbrunner,
    and Morteza Saghafian. “Chromatic Alpha Complexes.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2212.03128">https://doi.org/10.48550/arXiv.2212.03128</a>.
  ieee: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian,
    “Chromatic alpha complexes,” <i>arXiv</i>. .
  ista: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic
    alpha complexes. arXiv, 2212.03128.
  mla: Cultrera di Montesano, Sebastiano, et al. “Chromatic Alpha Complexes.” <i>ArXiv</i>,
    2212.03128, doi:<a href="https://doi.org/10.48550/arXiv.2212.03128">10.48550/arXiv.2212.03128</a>.
  short: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, ArXiv
    (n.d.).
corr_author: '1'
das_tickbox: '0'
date_created: 2024-03-08T10:13:59Z
date_published: 2024-02-07T00:00:00Z
date_updated: 2026-10-02T11:56:13Z
day: '07'
department:
- _id: HeEd
doi: 10.48550/arXiv.2212.03128
external_id:
  arxiv:
  - '2212.03128'
fulldoi: https://doi.org/10.48550/arXiv.2212.03128
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2212.03128
month: '02'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '18979'
    relation: dissertation_contains
    status: public
  - id: '20585'
    relation: later_version
    status: public
  - id: '15094'
    relation: dissertation_contains
    status: public
researchdata_availability: no
status: public
supplementarymaterial: no
title: Chromatic alpha complexes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
_id: '12086'
abstract:
- lang: eng
  text: We present a simple algorithm for computing higher-order Delaunay mosaics
    that works in Euclidean spaces of any finite dimensions. The algorithm selects
    the vertices of the order-k mosaic from incrementally constructed lower-order
    mosaics and uses an algorithm for weighted first-order Delaunay mosaics as a black-box
    to construct the order-k mosaic from its vertices. Beyond this black-box, the
    algorithm uses only combinatorial operations, thus facilitating easy implementation.
    We extend this algorithm to compute higher-order α-shapes and provide open-source
    implementations. We present experimental results for properties of higher-order
    Delaunay mosaics of random point sets.
acknowledgement: Open access funding provided by Austrian Science Fund (FWF). This
  project has received funding from the European Research Council (ERC) under the
  European Union’s Horizon 2020 research and innovation programme, Grant No. 788183,
  from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and
  from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry
  and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Georg F
  full_name: Osang, Georg F
  id: 464B40D6-F248-11E8-B48F-1D18A9856A87
  last_name: Osang
  orcid: 0000-0002-8882-5116
citation:
  ama: Edelsbrunner H, Osang GF. A simple algorithm for higher-order Delaunay mosaics
    and alpha shapes. <i>Algorithmica</i>. 2023;85:277-295. doi:<a href="https://doi.org/10.1007/s00453-022-01027-6">10.1007/s00453-022-01027-6</a>
  apa: Edelsbrunner, H., &#38; Osang, G. F. (2023). A simple algorithm for higher-order
    Delaunay mosaics and alpha shapes. <i>Algorithmica</i>. Springer Nature. <a href="https://doi.org/10.1007/s00453-022-01027-6">https://doi.org/10.1007/s00453-022-01027-6</a>
  chicago: Edelsbrunner, Herbert, and Georg F Osang. “A Simple Algorithm for Higher-Order
    Delaunay Mosaics and Alpha Shapes.” <i>Algorithmica</i>. Springer Nature, 2023.
    <a href="https://doi.org/10.1007/s00453-022-01027-6">https://doi.org/10.1007/s00453-022-01027-6</a>.
  ieee: H. Edelsbrunner and G. F. Osang, “A simple algorithm for higher-order Delaunay
    mosaics and alpha shapes,” <i>Algorithmica</i>, vol. 85. Springer Nature, pp.
    277–295, 2023.
  ista: Edelsbrunner H, Osang GF. 2023. A simple algorithm for higher-order Delaunay
    mosaics and alpha shapes. Algorithmica. 85, 277–295.
  mla: Edelsbrunner, Herbert, and Georg F. Osang. “A Simple Algorithm for Higher-Order
    Delaunay Mosaics and Alpha Shapes.” <i>Algorithmica</i>, vol. 85, Springer Nature,
    2023, pp. 277–95, doi:<a href="https://doi.org/10.1007/s00453-022-01027-6">10.1007/s00453-022-01027-6</a>.
  short: H. Edelsbrunner, G.F. Osang, Algorithmica 85 (2023) 277–295.
corr_author: '1'
date_created: 2022-09-11T22:01:57Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2025-04-23T08:46:48Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00453-022-01027-6
ec_funded: 1
external_id:
  isi:
  - '000846967100001'
  pmid:
  - '36687803'
file:
- access_level: open_access
  checksum: 71685ca5121f4c837f40c3f8eb50c915
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fulldoi: https://doi.org/10.1007/s00453-022-01027-6
has_accepted_license: '1'
intvolume: '        85'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 277-295
pmid: 1
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Algorithmica
publication_identifier:
  eissn:
  - 1432-0541
  issn:
  - 0178-4617
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A simple algorithm for higher-order Delaunay mosaics and alpha shapes
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type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2023'
...
---
_id: '12287'
abstract:
- lang: eng
  text: We present criteria for establishing a triangulation of a manifold. Given
    a manifold M, a simplicial complex A, and a map H from the underlying space of
    A to M, our criteria are presented in local coordinate charts for M, and ensure
    that H is a homeomorphism. These criteria do not require a differentiable structure,
    or even an explicit metric on M. No Delaunay property of A is assumed. The result
    provides a triangulation guarantee for algorithms that construct a simplicial
    complex by working in local coordinate patches. Because the criteria are easily
    verified in such a setting, they are expected to be of general use.
acknowledgement: "This work has been funded by the European Research Council under
  the European Union’s ERC Grant Agreement number 339025 GUDHI (Algorithmic Foundations
  of Geometric Understanding in Higher Dimensions). Arijit Ghosh is supported by Ramanujan
  Fellowship (No. SB/S2/RJN-064/2015). Part of this work was done when Arijit Ghosh
  was a Researcher at Max-Planck-Institute for Informatics, Germany, supported by
  the IndoGerman Max Planck Center for Computer Science (IMPECS). Mathijs Wintraecken
  also received funding from the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie grant agreement No. 754411 and the Austrian
  Science Fund (FWF): M-3073. A part of the results described in this paper were presented
  at SoCG 2018 and in [3]. \r\nOpen access funding provided by the Austrian Science
  Fund (FWF)."
article_processing_charge: No
article_type: original
author:
- first_name: Jean-Daniel
  full_name: Boissonnat, Jean-Daniel
  last_name: Boissonnat
- first_name: Ramsay
  full_name: Dyer, Ramsay
  last_name: Dyer
- first_name: Arijit
  full_name: Ghosh, Arijit
  last_name: Ghosh
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. Local criteria for triangulating
    general manifolds. <i>Discrete &#38; Computational Geometry</i>. 2023;69:156-191.
    doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>
  apa: Boissonnat, J.-D., Dyer, R., Ghosh, A., &#38; Wintraecken, M. (2023). Local
    criteria for triangulating general manifolds. <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>
  chicago: Boissonnat, Jean-Daniel, Ramsay Dyer, Arijit Ghosh, and Mathijs Wintraecken.
    “Local Criteria for Triangulating General Manifolds.” <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>.
  ieee: J.-D. Boissonnat, R. Dyer, A. Ghosh, and M. Wintraecken, “Local criteria for
    triangulating general manifolds,” <i>Discrete &#38; Computational Geometry</i>,
    vol. 69. Springer Nature, pp. 156–191, 2023.
  ista: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. 2023. Local criteria for triangulating
    general manifolds. Discrete &#38; Computational Geometry. 69, 156–191.
  mla: Boissonnat, Jean-Daniel, et al. “Local Criteria for Triangulating General Manifolds.”
    <i>Discrete &#38; Computational Geometry</i>, vol. 69, Springer Nature, 2023,
    pp. 156–91, doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>.
  short: J.-D. Boissonnat, R. Dyer, A. Ghosh, M. Wintraecken, Discrete &#38; Computational
    Geometry 69 (2023) 156–191.
corr_author: '1'
date_created: 2023-01-16T10:04:06Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2025-04-14T07:44:00Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-022-00431-7
ec_funded: 1
external_id:
  isi:
  - '000862193600001'
file:
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fulldoi: https://doi.org/10.1007/s00454-022-00431-7
has_accepted_license: '1'
intvolume: '        69'
isi: 1
keyword:
- Computational Theory and Mathematics
- Discrete Mathematics and Combinatorics
- Geometry and Topology
- Theoretical Computer Science
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 156-191
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: Discrete & Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local criteria for triangulating general manifolds
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type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 69
year: '2023'
...
---
_id: '12544'
abstract:
- lang: eng
  text: Geometry is crucial in our efforts to comprehend the structures and dynamics
    of biomolecules. For example, volume, surface area, and integrated mean and Gaussian
    curvature of the union of balls representing a molecule are used to quantify its
    interactions with the water surrounding it in the morphometric implicit solvent
    models. The Alpha Shape theory provides an accurate and reliable method for computing
    these geometric measures. In this paper, we derive homogeneous formulas for the
    expressions of these measures and their derivatives with respect to the atomic
    coordinates, and we provide algorithms that implement them into a new software
    package, AlphaMol. The only variables in these formulas are the interatomic distances,
    making them insensitive to translations and rotations. AlphaMol includes a sequential
    algorithm and a parallel algorithm. In the parallel version, we partition the
    atoms of the molecule of interest into 3D rectangular blocks, using a kd-tree
    algorithm. We then apply the sequential algorithm of AlphaMol to each block, augmented
    by a buffer zone to account for atoms whose ball representations may partially
    cover the block. The current parallel version of AlphaMol leads to a 20-fold speed-up
    compared to an independent serial implementation when using 32 processors. For
    instance, it takes 31 s to compute the geometric measures and derivatives of each
    atom in a viral capsid with more than 26 million atoms on 32 Intel processors
    running at 2.7 GHz. The presence of the buffer zones, however, leads to redundant
    computations, which ultimately limit the impact of using multiple processors.
    AlphaMol is available as an OpenSource software.
acknowledgement: "P.K. acknowledges support from the University of California Multicampus
  Research Programs and Initiatives (Grant No. M21PR3267) and from the NSF (Grant
  No.1760485). H.E. acknowledges support from the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation program, Grant No.
  788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31,
  and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry
  and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35.\r\nOpen Access
  is funded by the Austrian Science Fund (FWF)."
article_processing_charge: No
article_type: original
author:
- first_name: Patrice
  full_name: Koehl, Patrice
  last_name: Koehl
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: Koehl P, Akopyan A, Edelsbrunner H. Computing the volume, surface area, mean,
    and Gaussian curvatures of molecules and their derivatives. <i>Journal of Chemical
    Information and Modeling</i>. 2023;63(3):973-985. doi:<a href="https://doi.org/10.1021/acs.jcim.2c01346">10.1021/acs.jcim.2c01346</a>
  apa: Koehl, P., Akopyan, A., &#38; Edelsbrunner, H. (2023). Computing the volume,
    surface area, mean, and Gaussian curvatures of molecules and their derivatives.
    <i>Journal of Chemical Information and Modeling</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.jcim.2c01346">https://doi.org/10.1021/acs.jcim.2c01346</a>
  chicago: Koehl, Patrice, Arseniy Akopyan, and Herbert Edelsbrunner. “Computing the
    Volume, Surface Area, Mean, and Gaussian Curvatures of Molecules and Their Derivatives.”
    <i>Journal of Chemical Information and Modeling</i>. American Chemical Society,
    2023. <a href="https://doi.org/10.1021/acs.jcim.2c01346">https://doi.org/10.1021/acs.jcim.2c01346</a>.
  ieee: P. Koehl, A. Akopyan, and H. Edelsbrunner, “Computing the volume, surface
    area, mean, and Gaussian curvatures of molecules and their derivatives,” <i>Journal
    of Chemical Information and Modeling</i>, vol. 63, no. 3. American Chemical Society,
    pp. 973–985, 2023.
  ista: Koehl P, Akopyan A, Edelsbrunner H. 2023. Computing the volume, surface area,
    mean, and Gaussian curvatures of molecules and their derivatives. Journal of Chemical
    Information and Modeling. 63(3), 973–985.
  mla: Koehl, Patrice, et al. “Computing the Volume, Surface Area, Mean, and Gaussian
    Curvatures of Molecules and Their Derivatives.” <i>Journal of Chemical Information
    and Modeling</i>, vol. 63, no. 3, American Chemical Society, 2023, pp. 973–85,
    doi:<a href="https://doi.org/10.1021/acs.jcim.2c01346">10.1021/acs.jcim.2c01346</a>.
  short: P. Koehl, A. Akopyan, H. Edelsbrunner, Journal of Chemical Information and
    Modeling 63 (2023) 973–985.
corr_author: '1'
date_created: 2023-02-12T23:00:59Z
date_published: 2023-02-13T00:00:00Z
date_updated: 2025-04-15T07:16:52Z
day: '13'
ddc:
- '510'
- '540'
department:
- _id: HeEd
doi: 10.1021/acs.jcim.2c01346
ec_funded: 1
external_id:
  isi:
  - '000920370700001'
  pmid:
  - '36638318'
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  date_created: 2023-08-16T12:21:13Z
  date_updated: 2023-08-16T12:21:13Z
  file_id: '14070'
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fulldoi: https://doi.org/10.1021/acs.jcim.2c01346
has_accepted_license: '1'
intvolume: '        63'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 973-985
pmid: 1
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Journal of Chemical Information and Modeling
publication_identifier:
  eissn:
  - 1549-960X
  issn:
  - 1549-9596
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Computing the volume, surface area, mean, and Gaussian curvatures of molecules
  and their derivatives
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  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 63
year: '2023'
...
---
_id: '12709'
abstract:
- lang: eng
  text: Given a finite set A ⊂ ℝ^d, let Cov_{r,k} denote the set of all points within
    distance r to at least k points of A. Allowing r and k to vary, we obtain a 2-parameter
    family of spaces that grow larger when r increases or k decreases, called the
    multicover bifiltration. Motivated by the problem of computing the homology of
    this bifiltration, we introduce two closely related combinatorial bifiltrations,
    one polyhedral and the other simplicial, which are both topologically equivalent
    to the multicover bifiltration and far smaller than a Čech-based model considered
    in prior work of Sheehy. Our polyhedral construction is a bifiltration of the
    rhomboid tiling of Edelsbrunner and Osang, and can be efficiently computed using
    a variant of an algorithm given by these authors as well. Using an implementation
    for dimension 2 and 3, we provide experimental results. Our simplicial construction
    is useful for understanding the polyhedral construction and proving its correctness.
acknowledgement: We thank the anonymous reviewers for many helpful comments and suggestions,
  which led to substantial improvements of the paper. The first two authors were supported
  by the Austrian Science Fund (FWF) grant number P 29984-N35 and W1230. The first
  author was partly supported by an Austrian Marshall Plan Scholarship, and by the
  Brummer & Partners MathDataLab. A conference version of this paper was presented
  at the 37th International Symposium on Computational Geometry (SoCG 2021). Open
  access funding provided by the Royal Institute of Technology.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: René
  full_name: Corbet, René
  last_name: Corbet
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
- first_name: Michael
  full_name: Lesnick, Michael
  last_name: Lesnick
- first_name: Georg F
  full_name: Osang, Georg F
  id: 464B40D6-F248-11E8-B48F-1D18A9856A87
  last_name: Osang
  orcid: 0000-0002-8882-5116
citation:
  ama: Corbet R, Kerber M, Lesnick M, Osang GF. Computing the multicover bifiltration.
    <i>Discrete and Computational Geometry</i>. 2023;70:376-405. doi:<a href="https://doi.org/10.1007/s00454-022-00476-8">10.1007/s00454-022-00476-8</a>
  apa: Corbet, R., Kerber, M., Lesnick, M., &#38; Osang, G. F. (2023). Computing the
    multicover bifiltration. <i>Discrete and Computational Geometry</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00454-022-00476-8">https://doi.org/10.1007/s00454-022-00476-8</a>
  chicago: Corbet, René, Michael Kerber, Michael Lesnick, and Georg F Osang. “Computing
    the Multicover Bifiltration.” <i>Discrete and Computational Geometry</i>. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/s00454-022-00476-8">https://doi.org/10.1007/s00454-022-00476-8</a>.
  ieee: R. Corbet, M. Kerber, M. Lesnick, and G. F. Osang, “Computing the multicover
    bifiltration,” <i>Discrete and Computational Geometry</i>, vol. 70. Springer Nature,
    pp. 376–405, 2023.
  ista: Corbet R, Kerber M, Lesnick M, Osang GF. 2023. Computing the multicover bifiltration.
    Discrete and Computational Geometry. 70, 376–405.
  mla: Corbet, René, et al. “Computing the Multicover Bifiltration.” <i>Discrete and
    Computational Geometry</i>, vol. 70, Springer Nature, 2023, pp. 376–405, doi:<a
    href="https://doi.org/10.1007/s00454-022-00476-8">10.1007/s00454-022-00476-8</a>.
  short: R. Corbet, M. Kerber, M. Lesnick, G.F. Osang, Discrete and Computational
    Geometry 70 (2023) 376–405.
date_created: 2023-03-05T23:01:06Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2025-07-10T12:01:57Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1007/s00454-022-00476-8
external_id:
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  - '2103.07823'
  isi:
  - '000936496800001'
  pmid:
  - '37581017'
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language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 376-405
pmid: 1
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
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    relation: earlier_version
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scopus_import: '1'
status: public
title: Computing the multicover bifiltration
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type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 70
year: '2023'
...
---
_id: '12763'
abstract:
- lang: eng
  text: 'Kleinjohann (Archiv der Mathematik 35(1):574–582, 1980; Mathematische Zeitschrift
    176(3), 327–344, 1981) and Bangert (Archiv der Mathematik 38(1):54–57, 1982) extended
    the reach rch(S) from subsets S of Euclidean space to the reach rchM(S) of subsets
    S of Riemannian manifolds M, where M is smooth (we’ll assume at least C3). Bangert
    showed that sets of positive reach in Euclidean space and Riemannian manifolds
    are very similar. In this paper we introduce a slight variant of Kleinjohann’s
    and Bangert’s extension and quantify the similarity between sets of positive reach
    in Euclidean space and Riemannian manifolds in a new way: Given p∈M and q∈S, we
    bound the local feature size (a local version of the reach) of its lifting to
    the tangent space via the inverse exponential map (exp−1p(S)) at q, assuming that
    rchM(S) and the geodesic distance dM(p,q) are bounded. These bounds are motivated
    by the importance of the reach and local feature size to manifold learning, topological
    inference, and triangulating manifolds and the fact that intrinsic approaches
    circumvent the curse of dimensionality.'
acknowledgement: "We thank Eddie Aamari, David Cohen-Steiner, Isa Costantini, Fred
  Chazal, Ramsay Dyer, André Lieutier, and Alef Sterk for discussion and Pierre Pansu
  for encouragement. We further acknowledge the anonymous reviewers whose comments
  helped improve the exposition.\r\nThe research leading to these results has received
  funding from the European Research Council (ERC) under the European Union’s Seventh
  Framework Programme (FP/2007-2013) / ERC Grant Agreement No. 339025 GUDHI (Algorithmic
  Foundations of Geometry Understanding in Higher Dimensions). The first author is
  further supported by the French government, through the 3IA Côte d’Azur Investments
  in the Future project managed by the National Research Agency (ANR) with the reference
  number ANR-19-P3IA-0002. The second author is supported by the European Union’s
  Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  Grant Agreement No. 754411 and the Austrian science fund (FWF) M-3073."
article_processing_charge: No
article_type: original
author:
- first_name: Jean Daniel
  full_name: Boissonnat, Jean Daniel
  last_name: Boissonnat
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat JD, Wintraecken M. The reach of subsets of manifolds. <i>Journal
    of Applied and Computational Topology</i>. 2023;7:619-641. doi:<a href="https://doi.org/10.1007/s41468-023-00116-x">10.1007/s41468-023-00116-x</a>
  apa: Boissonnat, J. D., &#38; Wintraecken, M. (2023). The reach of subsets of manifolds.
    <i>Journal of Applied and Computational Topology</i>. Springer Nature. <a href="https://doi.org/10.1007/s41468-023-00116-x">https://doi.org/10.1007/s41468-023-00116-x</a>
  chicago: Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets
    of Manifolds.” <i>Journal of Applied and Computational Topology</i>. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/s41468-023-00116-x">https://doi.org/10.1007/s41468-023-00116-x</a>.
  ieee: J. D. Boissonnat and M. Wintraecken, “The reach of subsets of manifolds,”
    <i>Journal of Applied and Computational Topology</i>, vol. 7. Springer Nature,
    pp. 619–641, 2023.
  ista: Boissonnat JD, Wintraecken M. 2023. The reach of subsets of manifolds. Journal
    of Applied and Computational Topology. 7, 619–641.
  mla: Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets of
    Manifolds.” <i>Journal of Applied and Computational Topology</i>, vol. 7, Springer
    Nature, 2023, pp. 619–41, doi:<a href="https://doi.org/10.1007/s41468-023-00116-x">10.1007/s41468-023-00116-x</a>.
  short: J.D. Boissonnat, M. Wintraecken, Journal of Applied and Computational Topology
    7 (2023) 619–641.
corr_author: '1'
date_created: 2023-03-26T22:01:08Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2025-04-14T07:44:01Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/s41468-023-00116-x
ec_funded: 1
fulldoi: https://doi.org/10.1007/s41468-023-00116-x
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://inserm.hal.science/INRIA-SACLAY/hal-04083524v1
month: '09'
oa: 1
oa_version: Submitted Version
page: 619-641
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: Journal of Applied and Computational Topology
publication_identifier:
  eissn:
  - 2367-1734
  issn:
  - 2367-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The reach of subsets of manifolds
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2023'
...
