---
OA_place: repository
_id: '18673'
abstract:
- lang: eng
  text: "Motivated by applications to crystalline materials, we generalize the merge
    tree and the related barcode of a filtered complex to the periodic setting in
    Euclidean space. They are invariant under isometries, changing bases, and indeed
    changing lattices. In addition, we prove stability under perturbations and provide
    an algorithm that under mild geometric conditions typically satisfied by crystalline
    materials takes O((n+m)logn) time, in which n and m are the numbers of vertices
    and edges in the quotient complex, respectively.\r\n"
acknowledgement: "Both authors are partially supported by the European Research Council
  (ERC) Horizon 2020 project\r\n‘Alpha Shape Theory Extended’, grant no. 788183. The
  first author is also partially supported by the DFG\r\nCollaborative Research Center
  TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund\r\n(FWF),
  grant no. I 02979-N35."
article_processing_charge: No
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
citation:
  ama: Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>
  apa: Edelsbrunner, H., &#38; Heiss, T. (n.d.). Merge trees of periodic filtrations.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2408.16575">https://doi.org/10.48550/arXiv.2408.16575</a>
  chicago: Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.”
    <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2408.16575">https://doi.org/10.48550/arXiv.2408.16575</a>.
  ieee: H. Edelsbrunner and T. Heiss, “Merge trees of periodic filtrations,” <i>arXiv</i>.
    .
  ista: Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. arXiv, <a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>.
  mla: Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.”
    <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>.
  short: H. Edelsbrunner, T. Heiss, ArXiv (n.d.).
corr_author: '1'
date_created: 2024-12-18T14:06:57Z
date_published: 2024-08-29T00:00:00Z
date_updated: 2026-04-07T12:54:09Z
day: '29'
department:
- _id: HeEd
doi: 10.48550/arXiv.2408.16575
ec_funded: 1
external_id:
  arxiv:
  - '2408.16575'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2408.16575
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '18667'
    relation: dissertation_contains
    status: public
status: public
title: Merge trees of periodic filtrations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: repository
_id: '18981'
abstract:
- lang: eng
  text: We establish several results combining discrete Morse theory and microlocal
    sheaf theory in the setting of finite posets and simplicial complexes. Our primary
    tool is a computationally tractable description of the bounded derived category
    of sheaves on a poset with the Alexandrov topology. We prove that each bounded
    complex of sheaves on a finite poset admits a unique (up to isomorphism of complexes)
    minimal injective resolution, and we provide algorithms for computing minimal
    injective resolution of an injective complex, as well as several useful functors
    between derived categories of sheaves. For the constant sheaf on a simplicial
    complex, we give asymptotically tight bounds on the complexity of computing the
    minimal injective resolution using those algorithms. Our main result is a novel
    definition of the discrete microsupport of a bounded complex of sheaves on a finite
    poset. We detail several foundational properties of the discrete microsupport,
    as well as a microlocal generalization of the discrete homological Morse theorem
    and Morse inequalities.
acknowledgement: "This project has received funding from the European Research Council
  (ERC) under the European\r\nUnion’s Horizon 2020 research and innovation programme,
  grant no. 788183, from the Wittgenstein Prize,\r\nAustrian Science Fund (FWF), grant
  no. Z 342-N31, and from the DFG Collaborative Research Center TRR\r\n109, ‘Discretization
  in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35."
article_processing_charge: No
arxiv: 1
author:
- first_name: Adam
  full_name: Brown, Adam
  last_name: Brown
- first_name: Ondrej
  full_name: Draganov, Ondrej
  id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
  last_name: Draganov
  orcid: 0000-0003-0464-3823
citation:
  ama: Brown A, Draganov O. Discrete microlocal Morse theory. <i>arXiv</i>. doi:<a
    href="https://doi.org/10.48550/arXiv.2209.14993">10.48550/arXiv.2209.14993</a>
  apa: Brown, A., &#38; Draganov, O. (n.d.). Discrete microlocal Morse theory. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/arXiv.2209.14993">https://doi.org/10.48550/arXiv.2209.14993</a>
  chicago: Brown, Adam, and Ondrej Draganov. “Discrete Microlocal Morse Theory.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2209.14993">https://doi.org/10.48550/arXiv.2209.14993</a>.
  ieee: A. Brown and O. Draganov, “Discrete microlocal Morse theory,” <i>arXiv</i>.
    .
  ista: Brown A, Draganov O. Discrete microlocal Morse theory. arXiv, <a href="https://doi.org/10.48550/arXiv.2209.14993">10.48550/arXiv.2209.14993</a>.
  mla: Brown, Adam, and Ondrej Draganov. “Discrete Microlocal Morse Theory.” <i>ArXiv</i>,
    doi:<a href="https://doi.org/10.48550/arXiv.2209.14993">10.48550/arXiv.2209.14993</a>.
  short: A. Brown, O. Draganov, ArXiv (n.d.).
corr_author: '1'
date_created: 2025-01-31T17:03:04Z
date_published: 2024-06-09T00:00:00Z
date_updated: 2026-04-07T11:47:29Z
day: '09'
department:
- _id: HeEd
doi: 10.48550/arXiv.2209.14993
ec_funded: 1
external_id:
  arxiv:
  - '2209.14993'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2209.14993
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '20323'
    relation: later_version
    status: public
  - id: '18979'
    relation: dissertation_contains
    status: public
status: public
title: Discrete microlocal Morse theory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '18998'
abstract:
- lang: eng
  text: Word embeddings represent language vocabularies as clouds of d-dimensional
    points. We investigate how information is conveyed by the general shape of these
    clouds, instead of representing the semantic meaning of each token. Specifically,
    we use the notion of persistent homology from topological data analysis (TDA)
    to measure the distances between language pairs from the shape of their unlabeled
    embeddings. These distances quantify the degree of non-isometry of the embeddings.
    To distinguish whether these differences are random training errors or capture
    real information about the languages, we use the computed distance matrices to
    construct language phylogenetic trees over 81 Indo-European languages. Careful
    evaluation shows that our reconstructed trees exhibit strong and statistically-significant
    similarities to the reference.
article_processing_charge: No
arxiv: 1
author:
- first_name: Ondrej
  full_name: Draganov, Ondrej
  id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
  last_name: Draganov
  orcid: 0000-0003-0464-3823
- first_name: Steven
  full_name: Skiena, Steven
  last_name: Skiena
citation:
  ama: 'Draganov O, Skiena S. The shape of word embeddings: Quantifying non-isometry
    with topological data analysis. In: <i>Findings of the Association for Computational
    Linguistics: EMNLP 2024</i>. Association for Computational Linguistics; 2024:12080-12099.
    doi:<a href="https://doi.org/10.18653/v1/2024.findings-emnlp.705">10.18653/v1/2024.findings-emnlp.705</a>'
  apa: 'Draganov, O., &#38; Skiena, S. (2024). The shape of word embeddings: Quantifying
    non-isometry with topological data analysis. In <i>Findings of the Association
    for Computational Linguistics: EMNLP 2024</i> (pp. 12080–12099). Miami, FL, United
    States: Association for Computational Linguistics. <a href="https://doi.org/10.18653/v1/2024.findings-emnlp.705">https://doi.org/10.18653/v1/2024.findings-emnlp.705</a>'
  chicago: 'Draganov, Ondrej, and Steven Skiena. “The Shape of Word Embeddings: Quantifying
    Non-Isometry with Topological Data Analysis.” In <i>Findings of the Association
    for Computational Linguistics: EMNLP 2024</i>, 12080–99. Association for Computational
    Linguistics, 2024. <a href="https://doi.org/10.18653/v1/2024.findings-emnlp.705">https://doi.org/10.18653/v1/2024.findings-emnlp.705</a>.'
  ieee: 'O. Draganov and S. Skiena, “The shape of word embeddings: Quantifying non-isometry
    with topological data analysis,” in <i>Findings of the Association for Computational
    Linguistics: EMNLP 2024</i>, Miami, FL, United States, 2024, pp. 12080–12099.'
  ista: 'Draganov O, Skiena S. 2024. The shape of word embeddings: Quantifying non-isometry
    with topological data analysis. Findings of the Association for Computational
    Linguistics: EMNLP 2024. EMNLP: Conference on Empirical Methods in Natural Language
    Processing, 12080–12099.'
  mla: 'Draganov, Ondrej, and Steven Skiena. “The Shape of Word Embeddings: Quantifying
    Non-Isometry with Topological Data Analysis.” <i>Findings of the Association for
    Computational Linguistics: EMNLP 2024</i>, Association for Computational Linguistics,
    2024, pp. 12080–99, doi:<a href="https://doi.org/10.18653/v1/2024.findings-emnlp.705">10.18653/v1/2024.findings-emnlp.705</a>.'
  short: 'O. Draganov, S. Skiena, in:, Findings of the Association for Computational
    Linguistics: EMNLP 2024, Association for Computational Linguistics, 2024, pp.
    12080–12099.'
conference:
  end_date: 2024-11-16
  location: Miami, FL, United States
  name: 'EMNLP: Conference on Empirical Methods in Natural Language Processing'
  start_date: 2024-11-12
corr_author: '1'
date_created: 2025-02-04T16:19:28Z
date_published: 2024-11-01T00:00:00Z
date_updated: 2025-02-10T08:21:37Z
day: '01'
ddc:
- '500'
department:
- _id: GradSch
- _id: HeEd
doi: 10.18653/v1/2024.findings-emnlp.705
external_id:
  arxiv:
  - '2404.00500'
file:
- access_level: open_access
  checksum: f4416a5962194f0181ab0dc7f9ef93c0
  content_type: application/pdf
  creator: dernst
  date_created: 2025-02-10T08:20:34Z
  date_updated: 2025-02-10T08:20:34Z
  file_id: '19016'
  file_name: 2024_EMNLP_Draganov.pdf
  file_size: 1312638
  relation: main_file
  success: 1
file_date_updated: 2025-02-10T08:20:34Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 12080-12099
publication: 'Findings of the Association for Computational Linguistics: EMNLP 2024'
publication_status: published
publisher: Association for Computational Linguistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The shape of word embeddings: Quantifying non-isometry with topological data
  analysis'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '18999'
abstract:
- lang: eng
  text: Exploring the shape of point configurations has been a key driver in the evolution
    of TDA (short for topological data analysis) since its infancy. This survey illustrates
    the recent efforts to broaden these ideas to model spatial interactions among
    multiple configurations, each distinguished by a color. It describes advances
    in this area and prepares the ground for further exploration by mentioning unresolved
    questions and promising research avenues while focusing on the overlap with discrete
    geometry.
article_number: '2406.04102'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sebastiano
  full_name: Cultrera di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera di Montesano
  orcid: 0000-0001-6249-0832
- first_name: Ondrej
  full_name: Draganov, Ondrej
  id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
  last_name: Draganov
  orcid: 0000-0003-0464-3823
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic
    topological data analysis. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/ARXIV.2406.04102">10.48550/ARXIV.2406.04102</a>
  apa: Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., &#38; Saghafian,
    M. (n.d.). Chromatic topological data analysis. <i>arXiv</i>. <a href="https://doi.org/10.48550/ARXIV.2406.04102">https://doi.org/10.48550/ARXIV.2406.04102</a>
  chicago: Cultrera di Montesano, Sebastiano, Ondrej Draganov, Herbert Edelsbrunner,
    and Morteza Saghafian. “Chromatic Topological Data Analysis.” <i>ArXiv</i>, n.d.
    <a href="https://doi.org/10.48550/ARXIV.2406.04102">https://doi.org/10.48550/ARXIV.2406.04102</a>.
  ieee: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian,
    “Chromatic topological data analysis,” <i>arXiv</i>. .
  ista: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic
    topological data analysis. arXiv, 2406.04102.
  mla: Cultrera di Montesano, Sebastiano, et al. “Chromatic Topological Data Analysis.”
    <i>ArXiv</i>, 2406.04102, doi:<a href="https://doi.org/10.48550/ARXIV.2406.04102">10.48550/ARXIV.2406.04102</a>.
  short: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, ArXiv
    (n.d.).
corr_author: '1'
date_created: 2025-02-04T16:21:21Z
date_published: 2024-06-06T00:00:00Z
date_updated: 2025-02-10T08:14:27Z
day: '06'
ddc:
- '510'
department:
- _id: GradSch
- _id: HeEd
doi: 10.48550/ARXIV.2406.04102
external_id:
  arxiv:
  - '2406.04102'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2406.04102
month: '06'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Chromatic topological data analysis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
_id: '17891'
abstract:
- lang: eng
  text: "Abstract\r\nMethods used in topological data analysis naturally capture higher-order
    interactions in point cloud data embedded in a metric space. This methodology
    was recently extended to data living in an information space, by which we mean
    a space measured with an information theoretical distance. One such setting is
    a finite collection of discrete probability distributions embedded in the probability
    simplex measured with the relative entropy (Kullback–Leibler divergence). More
    generally, one can work with a Bregman divergence parameterized by a different
    notion of entropy. While theoretical algorithms exist for this setup, there is
    a paucity of implementations for exploring and comparing geometric-topological
    properties of various information spaces. The interest of this work is therefore
    twofold. First, we propose the first robust algorithms and software for geometric
    and topological data analysis in information space. Perhaps surprisingly, despite
    working with Bregman divergences, our design reuses robust libraries for the Euclidean
    case. Second, using the new software, we take the first steps towards understanding
    the geometric-topological structure of these spaces. In particular, we compare
    them with the more familiar spaces equipped with the Euclidean and Fisher metrics."
acknowledgement: We thank Anton Nikitenko for first observing that the Wrap complex
  can be characterized as stated in Claim (ii) of the Wrap Complex Lemma, and Ondrej
  Draganov for correcting a critical mistake in one of our formulas in Section 2.
article_number: '637'
article_processing_charge: Yes
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Katharina
  full_name: Ölsböck, Katharina
  id: 4D4AA390-F248-11E8-B48F-1D18A9856A87
  last_name: Ölsböck
  orcid: 0000-0002-4672-8297
- first_name: Hubert
  full_name: Wagner, Hubert
  id: 379CA8B8-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
citation:
  ama: Edelsbrunner H, Ölsböck K, Wagner H. Understanding higher-order interactions
    in information space. <i>Entropy</i>. 2024;26(8). doi:<a href="https://doi.org/10.3390/e26080637">10.3390/e26080637</a>
  apa: Edelsbrunner, H., Ölsböck, K., &#38; Wagner, H. (2024). Understanding higher-order
    interactions in information space. <i>Entropy</i>. MDPI. <a href="https://doi.org/10.3390/e26080637">https://doi.org/10.3390/e26080637</a>
  chicago: Edelsbrunner, Herbert, Katharina Ölsböck, and Hubert Wagner. “Understanding
    Higher-Order Interactions in Information Space.” <i>Entropy</i>. MDPI, 2024. <a
    href="https://doi.org/10.3390/e26080637">https://doi.org/10.3390/e26080637</a>.
  ieee: H. Edelsbrunner, K. Ölsböck, and H. Wagner, “Understanding higher-order interactions
    in information space,” <i>Entropy</i>, vol. 26, no. 8. MDPI, 2024.
  ista: Edelsbrunner H, Ölsböck K, Wagner H. 2024. Understanding higher-order interactions
    in information space. Entropy. 26(8), 637.
  mla: Edelsbrunner, Herbert, et al. “Understanding Higher-Order Interactions in Information
    Space.” <i>Entropy</i>, vol. 26, no. 8, 637, MDPI, 2024, doi:<a href="https://doi.org/10.3390/e26080637">10.3390/e26080637</a>.
  short: H. Edelsbrunner, K. Ölsböck, H. Wagner, Entropy 26 (2024).
date_created: 2024-09-08T22:01:11Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2025-09-08T09:13:44Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.3390/e26080637
external_id:
  isi:
  - '001305543500001'
  pmid:
  - '39202107'
file:
- access_level: open_access
  checksum: 624a9e2c5b49d6c38b88b0f675467ba3
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-09T09:01:12Z
  date_updated: 2024-09-09T09:01:12Z
  file_id: '17948'
  file_name: 2024_Entropy_Edelsbrunner.pdf
  file_size: 8025139
  relation: main_file
  success: 1
file_date_updated: 2024-09-09T09:01:12Z
has_accepted_license: '1'
intvolume: '        26'
isi: 1
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Entropy
publication_identifier:
  eissn:
  - 1099-4300
publication_status: published
publisher: MDPI
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://git.ista.ac.at/katharina.oelsboeck/wrap_2_3-public/
scopus_import: '1'
status: public
title: Understanding higher-order interactions in information space
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 26
year: '2024'
...
---
_id: '18097'
abstract:
- lang: eng
  text: "In our companion paper \"Tight bounds for the learning of homotopy à la Niyogi,
    Smale, and Weinberger for subsets of Euclidean spaces and of Riemannian manifolds\"
    we gave optimal bounds (in terms of the two one-sided Hausdorff distances) on
    a sample P of an input shape \U0001D4AE (either manifold or general set with positive
    reach) such that one can infer the homotopy of \U0001D4AE from the union of balls
    with some radius centred at P, both in Euclidean space and in a Riemannian manifold
    of bounded curvature. The construction showing the optimality of the bounds is
    not straightforward. The purpose of this video is to visualize and thus elucidate
    said construction in the Euclidean setting."
acknowledgement: "This research has been supported by the European Research Council
  (ERC), grant No. 788183, by the Wittgenstein Prize, Austrian Science Fund (FWF),
  grant No. Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian
  Science Fund (FWF), grant No. I02979-N35. Mathijs Wintraecken: Supported by the
  European Union’s Horizon 2020 research and innovation programme under the Marie
  Skłodowska-Curie grant agreement No. 754411, the Austrian science fund (FWF) grant
  No. M-3073, and the welcome package from IDEX of the Université Côte d’Azur.\r\nWe
  thank Jean-Daniel Boissonnat, Herbert Edelsbrunner, and Mariette Yvinec for discussion."
alternative_title:
- LIPIcs
article_number: '87'
article_processing_charge: Yes
author:
- first_name: Dominique
  full_name: Attali, Dominique
  last_name: Attali
- first_name: Hana
  full_name: Kourimska, Hana
  id: D9B8E14C-3C26-11EA-98F5-1F833DDC885E
  last_name: Kourimska
  orcid: 0000-0001-7841-0091
- first_name: Christopher D
  full_name: Fillmore, Christopher D
  id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
  last_name: Fillmore
- first_name: Ishika
  full_name: Ghosh, Ishika
  id: ee449b28-344d-11ef-a6d5-9ca430e9e9ff
  last_name: Ghosh
- first_name: Andre
  full_name: Lieutier, Andre
  last_name: Lieutier
- first_name: Elizabeth R
  full_name: Stephenson, Elizabeth R
  id: 2D04F932-F248-11E8-B48F-1D18A9856A87
  last_name: Stephenson
  orcid: 0000-0002-6862-208X
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: 'Attali D, Kourimska H, Fillmore CD, et al. The ultimate frontier: An optimality
    construction for homotopy inference (media exposition). In: <i>40th International
    Symposium on Computational Geometry</i>. Vol 293. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">10.4230/LIPIcs.SoCG.2024.87</a>'
  apa: 'Attali, D., Kourimska, H., Fillmore, C. D., Ghosh, I., Lieutier, A., Stephenson,
    E. R., &#38; Wintraecken, M. (2024). The ultimate frontier: An optimality construction
    for homotopy inference (media exposition). In <i>40th International Symposium
    on Computational Geometry</i> (Vol. 293). Athens, Greece: Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">https://doi.org/10.4230/LIPIcs.SoCG.2024.87</a>'
  chicago: 'Attali, Dominique, Hana Kourimska, Christopher D Fillmore, Ishika Ghosh,
    Andre Lieutier, Elizabeth R Stephenson, and Mathijs Wintraecken. “The Ultimate
    Frontier: An Optimality Construction for Homotopy Inference (Media Exposition).”
    In <i>40th International Symposium on Computational Geometry</i>, Vol. 293. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">https://doi.org/10.4230/LIPIcs.SoCG.2024.87</a>.'
  ieee: 'D. Attali <i>et al.</i>, “The ultimate frontier: An optimality construction
    for homotopy inference (media exposition),” in <i>40th International Symposium
    on Computational Geometry</i>, Athens, Greece, 2024, vol. 293.'
  ista: 'Attali D, Kourimska H, Fillmore CD, Ghosh I, Lieutier A, Stephenson ER, Wintraecken
    M. 2024. The ultimate frontier: An optimality construction for homotopy inference
    (media exposition). 40th International Symposium on Computational Geometry. SoCG:
    Symposium on Computational Geometry, LIPIcs, vol. 293, 87.'
  mla: 'Attali, Dominique, et al. “The Ultimate Frontier: An Optimality Construction
    for Homotopy Inference (Media Exposition).” <i>40th International Symposium on
    Computational Geometry</i>, vol. 293, 87, Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.87">10.4230/LIPIcs.SoCG.2024.87</a>.'
  short: D. Attali, H. Kourimska, C.D. Fillmore, I. Ghosh, A. Lieutier, E.R. Stephenson,
    M. Wintraecken, in:, 40th International Symposium on Computational Geometry, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
  end_date: 2024-06-14
  location: Athens, Greece
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2024-06-11
corr_author: '1'
date_created: 2024-09-19T10:29:48Z
date_published: 2024-06-06T00:00:00Z
date_updated: 2025-04-15T07:16:58Z
day: '06'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.87
ec_funded: 1
file:
- access_level: open_access
  checksum: 9355c2e60b8ec285e1b22719c5b73f1a
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-19T10:30:37Z
  date_updated: 2024-09-19T10:30:37Z
  file_id: '18098'
  file_name: 2024_LIPICs_Attali.pdf
  file_size: 3507177
  relation: main_file
  success: 1
file_date_updated: 2024-09-19T10:30:37Z
has_accepted_license: '1'
intvolume: '       293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: 40th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - '9783959773164'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
status: public
title: 'The ultimate frontier: An optimality construction for homotopy inference (media
  exposition)'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 293
year: '2024'
...
---
OA_place: publisher
_id: '18667'
abstract:
- lang: eng
  text: "Many chemical and physical properties of materials are determined by the
    material’s shape,\r\nfor example the size of its pores and the width of its tunnels.
    This makes materials science\r\na prime application area for geometrical and topological
    methods. Nevertheless many\r\nmethods in topological data analysis have not been
    satisfyingly extended to the needs of\r\nmaterials science. This thesis provides
    new methods and new mathematical theorems\r\ntargeted at those specific needs
    by answering four different research questions. While the\r\nmotivation for each
    of the research questions arises from materials science, the methods\r\nare versatile
    and can be applied in different areas as well. \r\n\r\nThe first research question
    is concerned with image data, for example a three-dimensional\r\ncomputed tomography
    (CT) scan of a material, like sand or stone. There are two commonly\r\nused topologies
    for digital images and depending on the application either of them might be\r\nrequired.
    However, software for computing the topological data analysis method persistence\r\nhomology,
    usually supports only one of the two topologies. We answer the question how to\r\ncompute
    persistent homology of an image with respect to one of the two topologies using\r\nsoftware
    that is intended for the other topology. \r\n\r\nThe second research question
    is concerned with image data as well, and asks how much\r\nof the topological
    information of an image is lost when the resolution is coarsened. As\r\ncomputer
    tomography scanners are more expensive the higher the resolution, it is an\r\nimportant
    question in materials science to know which resolution is enough to get satisfying\r\npersistent
    homology. We give theoretical bounds on the information loss based on different\r\ngeometrical
    properties of the object to be scanned. In addition, we conduct experiments on\r\nsand
    and stone CT image data. \r\n\r\nThe third research question is motivated by comparing
    crystalline materials efficiently. As\r\nthe atoms within a crystal repeat periodically,
    crystalline materials are either modeled by\r\nunmanageable infinite periodic
    point sets, or by one of their fundamental domains, which is\r\nunstable under
    perturbation. Therefore a fingerprint of crystalline materials is needed, with\r\nappropriate
    properties such that comparing the crystals can be eased by comparing the\r\nfingerprints
    instead. We define the density fingerprint and prove the necessary properties.
    \r\n\r\nThe fourth research question is motivated by studying the hole-structure
    or connectedness,\r\ni.e. persistent homology or merge trees, of crystalline materials.
    A common way to deal\r\nwith periodicity is to take a fundamental domain and identify
    opposite boundaries to form a\r\ntorus. However, computing persistent homology
    or merge trees on that torus loses some\r\nof the information materials scientists
    are interested in and is additionally not stable under\r\ncertain noise. We therefore
    decorate the merge tree stemming from the torus with additional\r\ninformation
    describing the density and growth rate of the periodic copies of a component\r\nwithin
    a growing spherical window. We prove all desired properties, like stability and
    efficient\r\ncomputability."
acknowledgement: "I was supported by the European Research Council (ERC) Horizon 2020
  project\r\n“Alpha Shape Theory Extended” No. 788183 and by the Pöttinger Scholarship.
  In addition,\r\nI am very thankful for having been able to attend the second Workshop
  for Women in\r\nComputational Topology in July 2019, funded by the Mathematical
  Sciences Institute at\r\nANU, the US National Science Foundation through the award
  CCF-1841455, the Australian\r\nMathematical Sciences Institute and the Association
  for Women in Mathematics. Two of the\r\nprojects presented in this thesis started
  there. One of them reached completion thanks to\r\nfunding from the MSRI Summer
  Research in Mathematics program awarded to me and my\r\ncollaborators in 2020."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
citation:
  ama: Heiss T. New methods for applying topological data analysis to materials science.
    2024. doi:<a href="https://doi.org/10.15479/at:ista:18667">10.15479/at:ista:18667</a>
  apa: Heiss, T. (2024). <i>New methods for applying topological data analysis to
    materials science</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:18667">https://doi.org/10.15479/at:ista:18667</a>
  chicago: Heiss, Teresa. “New Methods for Applying Topological Data Analysis to Materials
    Science.” Institute of Science and Technology Austria, 2024. <a href="https://doi.org/10.15479/at:ista:18667">https://doi.org/10.15479/at:ista:18667</a>.
  ieee: T. Heiss, “New methods for applying topological data analysis to materials
    science,” Institute of Science and Technology Austria, 2024.
  ista: Heiss T. 2024. New methods for applying topological data analysis to materials
    science. Institute of Science and Technology Austria.
  mla: Heiss, Teresa. <i>New Methods for Applying Topological Data Analysis to Materials
    Science</i>. Institute of Science and Technology Austria, 2024, doi:<a href="https://doi.org/10.15479/at:ista:18667">10.15479/at:ista:18667</a>.
  short: T. Heiss, New Methods for Applying Topological Data Analysis to Materials
    Science, Institute of Science and Technology Austria, 2024.
corr_author: '1'
date_created: 2024-12-17T16:17:55Z
date_published: 2024-12-17T00:00:00Z
date_updated: 2026-07-07T13:43:27Z
day: '17'
ddc:
- '514'
- '516'
- '004'
degree_awarded: PhD
department:
- _id: GradSch
- _id: HeEd
doi: 10.15479/at:ista:18667
ec_funded: 1
file:
- access_level: open_access
  checksum: 247bb057aed2fba1cd4711917aaa2d77
  content_type: application/pdf
  creator: theiss
  date_created: 2024-12-19T10:24:46Z
  date_updated: 2024-12-19T10:24:46Z
  file_id: '18686'
  file_name: Teresa_Heiss_PhD_Thesis_final.pdf
  file_size: 7752253
  relation: main_file
  success: 1
- access_level: closed
  checksum: 9648b45c07a008ee11a07f99856a139d
  content_type: application/zip
  creator: theiss
  date_created: 2024-12-19T10:24:50Z
  date_updated: 2024-12-19T10:24:50Z
  file_id: '18687'
  file_name: PhD_Thesis.zip
  file_size: 17197731
  relation: source_file
file_date_updated: 2024-12-19T10:24:50Z
has_accepted_license: '1'
keyword:
- persistent homology
- topological data analysis
- periodic
- crystalline materials
- images
- fingerprint
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '111'
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
publication_identifier:
  isbn:
  - 978-3-99078-052-7
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '10828'
    relation: part_of_dissertation
    status: public
  - id: '11440'
    relation: part_of_dissertation
    status: public
  - id: '18673'
    relation: part_of_dissertation
    status: public
  - id: '9345'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
title: New methods for applying topological data analysis to materials science
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2024'
...
---
OA_place: repository
_id: '15091'
abstract:
- lang: eng
  text: "Motivated by applications in the medical sciences, we study finite chromatic\r\nsets
    in Euclidean space from a topological perspective. Based on the persistent\r\nhomology
    for images, kernels and cokernels, we design provably stable\r\nhomological quantifiers
    that describe the geometric micro- and macro-structure\r\nof how the color classes
    mingle. These can be efficiently computed using\r\nchromatic variants of Delaunay
    and alpha complexes, and code that does these\r\ncomputations is provided."
article_number: '2212.03128'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sebastiano
  full_name: Cultrera di Montesano, Sebastiano
  id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
  last_name: Cultrera di Montesano
  orcid: 0000-0001-6249-0832
- first_name: Ondrej
  full_name: Draganov, Ondrej
  id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
  last_name: Draganov
  orcid: 0000-0003-0464-3823
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic
    alpha complexes. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2212.03128">10.48550/arXiv.2212.03128</a>
  apa: Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., &#38; Saghafian,
    M. (n.d.). Chromatic alpha complexes. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2212.03128">https://doi.org/10.48550/arXiv.2212.03128</a>
  chicago: Cultrera di Montesano, Sebastiano, Ondrej Draganov, Herbert Edelsbrunner,
    and Morteza Saghafian. “Chromatic Alpha Complexes.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2212.03128">https://doi.org/10.48550/arXiv.2212.03128</a>.
  ieee: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian,
    “Chromatic alpha complexes,” <i>arXiv</i>. .
  ista: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic
    alpha complexes. arXiv, 2212.03128.
  mla: Cultrera di Montesano, Sebastiano, et al. “Chromatic Alpha Complexes.” <i>ArXiv</i>,
    2212.03128, doi:<a href="https://doi.org/10.48550/arXiv.2212.03128">10.48550/arXiv.2212.03128</a>.
  short: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, ArXiv
    (n.d.).
corr_author: '1'
date_created: 2024-03-08T10:13:59Z
date_published: 2024-02-07T00:00:00Z
date_updated: 2026-07-23T12:03:56Z
day: '07'
department:
- _id: HeEd
doi: 10.48550/arXiv.2212.03128
external_id:
  arxiv:
  - '2212.03128'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2212.03128
month: '02'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '18979'
    relation: dissertation_contains
    status: public
  - id: '15094'
    relation: dissertation_contains
    status: public
  - id: '20585'
    relation: later_version
    status: public
status: public
title: Chromatic alpha complexes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2024'
...
---
_id: '17146'
abstract:
- lang: eng
  text: The Upper Bound Theorem for convex polytopes implies that the p-th Betti number
    of the Čech complex of any set of N points in ℝ^d and any radius satisfies β_p
    = O(N^m), with m = min{p+1, ⌈d/2⌉}. We construct sets in even and odd dimensions,
    which prove that this upper bound is asymptotically tight. For example, we describe
    a set of N = 2(n+1) points in ℝ³ and two radii such that the first Betti number
    of the Čech complex at one radius is (n+1)² - 1, and the second Betti number of
    the Čech complex at the other radius is n². In particular, there is an arrangement
    of n contruent balls in ℝ³ that enclose a quadratic number of voids, which answers
    a long-standing open question in computational geometry.
acknowledgement: "The first author is supported by the European Research Council (ERC),
  grant no. 788183, and by the DFG Collaborative Research Center TRR 109, Austrian
  Science Fund (FWF), grant no. {I 02979-N35.} The second author is supported by the
  European Research Council (ERC), grant \"GeoScape\" and by the Hungarian Science
  Foundation (NKFIH), grant K-131529. Both authors are supported by the Wittgenstein
  Prize, Austrian Science Fund (FWF), grant no. Z 342-N31.\r\nThe authors thank Matt
  Kahle for communicating the question about extremal Čech complexes, Ben Schweinhart
  for early discussions on the linked circles construction in three dimensions, and
  Gábor Tardos for helpful remarks and suggestions."
alternative_title:
- LIPIcs
article_number: '53'
article_processing_charge: No
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: János
  full_name: Pach, János
  id: E62E3130-B088-11EA-B919-BF823C25FEA4
  last_name: Pach
citation:
  ama: 'Edelsbrunner H, Pach J. Maximum Betti numbers of Čech complexes. In: <i>40th
    International Symposium on Computational Geometry</i>. Vol 293. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.53">10.4230/LIPIcs.SoCG.2024.53</a>'
  apa: 'Edelsbrunner, H., &#38; Pach, J. (2024). Maximum Betti numbers of Čech complexes.
    In <i>40th International Symposium on Computational Geometry</i> (Vol. 293). Athens,
    Greece: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.53">https://doi.org/10.4230/LIPIcs.SoCG.2024.53</a>'
  chicago: Edelsbrunner, Herbert, and János Pach. “Maximum Betti Numbers of Čech Complexes.”
    In <i>40th International Symposium on Computational Geometry</i>, Vol. 293. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.53">https://doi.org/10.4230/LIPIcs.SoCG.2024.53</a>.
  ieee: H. Edelsbrunner and J. Pach, “Maximum Betti numbers of Čech complexes,” in
    <i>40th International Symposium on Computational Geometry</i>, Athens, Greece,
    2024, vol. 293.
  ista: 'Edelsbrunner H, Pach J. 2024. Maximum Betti numbers of Čech complexes. 40th
    International Symposium on Computational Geometry. SoCG: Symposium on Computational
    Geometry, LIPIcs, vol. 293, 53.'
  mla: Edelsbrunner, Herbert, and János Pach. “Maximum Betti Numbers of Čech Complexes.”
    <i>40th International Symposium on Computational Geometry</i>, vol. 293, 53, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2024.53">10.4230/LIPIcs.SoCG.2024.53</a>.
  short: H. Edelsbrunner, J. Pach, in:, 40th International Symposium on Computational
    Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
  end_date: 2024-06-14
  location: Athens, Greece
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2024-06-11
date_created: 2024-06-16T22:01:06Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2026-07-27T08:15:58Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.53
ec_funded: 1
external_id:
  arxiv:
  - '2310.14801'
file:
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intvolume: '       293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
publication: 40th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - '9783959773164'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
  record:
  - id: '20657'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Maximum Betti numbers of Čech complexes
tmp:
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  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 293
year: '2024'
...
---
_id: '12086'
abstract:
- lang: eng
  text: We present a simple algorithm for computing higher-order Delaunay mosaics
    that works in Euclidean spaces of any finite dimensions. The algorithm selects
    the vertices of the order-k mosaic from incrementally constructed lower-order
    mosaics and uses an algorithm for weighted first-order Delaunay mosaics as a black-box
    to construct the order-k mosaic from its vertices. Beyond this black-box, the
    algorithm uses only combinatorial operations, thus facilitating easy implementation.
    We extend this algorithm to compute higher-order α-shapes and provide open-source
    implementations. We present experimental results for properties of higher-order
    Delaunay mosaics of random point sets.
acknowledgement: Open access funding provided by Austrian Science Fund (FWF). This
  project has received funding from the European Research Council (ERC) under the
  European Union’s Horizon 2020 research and innovation programme, Grant No. 788183,
  from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and
  from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry
  and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Georg F
  full_name: Osang, Georg F
  id: 464B40D6-F248-11E8-B48F-1D18A9856A87
  last_name: Osang
  orcid: 0000-0002-8882-5116
citation:
  ama: Edelsbrunner H, Osang GF. A simple algorithm for higher-order Delaunay mosaics
    and alpha shapes. <i>Algorithmica</i>. 2023;85:277-295. doi:<a href="https://doi.org/10.1007/s00453-022-01027-6">10.1007/s00453-022-01027-6</a>
  apa: Edelsbrunner, H., &#38; Osang, G. F. (2023). A simple algorithm for higher-order
    Delaunay mosaics and alpha shapes. <i>Algorithmica</i>. Springer Nature. <a href="https://doi.org/10.1007/s00453-022-01027-6">https://doi.org/10.1007/s00453-022-01027-6</a>
  chicago: Edelsbrunner, Herbert, and Georg F Osang. “A Simple Algorithm for Higher-Order
    Delaunay Mosaics and Alpha Shapes.” <i>Algorithmica</i>. Springer Nature, 2023.
    <a href="https://doi.org/10.1007/s00453-022-01027-6">https://doi.org/10.1007/s00453-022-01027-6</a>.
  ieee: H. Edelsbrunner and G. F. Osang, “A simple algorithm for higher-order Delaunay
    mosaics and alpha shapes,” <i>Algorithmica</i>, vol. 85. Springer Nature, pp.
    277–295, 2023.
  ista: Edelsbrunner H, Osang GF. 2023. A simple algorithm for higher-order Delaunay
    mosaics and alpha shapes. Algorithmica. 85, 277–295.
  mla: Edelsbrunner, Herbert, and Georg F. Osang. “A Simple Algorithm for Higher-Order
    Delaunay Mosaics and Alpha Shapes.” <i>Algorithmica</i>, vol. 85, Springer Nature,
    2023, pp. 277–95, doi:<a href="https://doi.org/10.1007/s00453-022-01027-6">10.1007/s00453-022-01027-6</a>.
  short: H. Edelsbrunner, G.F. Osang, Algorithmica 85 (2023) 277–295.
corr_author: '1'
date_created: 2022-09-11T22:01:57Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2025-04-23T08:46:48Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00453-022-01027-6
ec_funded: 1
external_id:
  isi:
  - '000846967100001'
  pmid:
  - '36687803'
file:
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  creator: dernst
  date_created: 2023-01-20T10:02:48Z
  date_updated: 2023-01-20T10:02:48Z
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  file_size: 911017
  relation: main_file
  success: 1
file_date_updated: 2023-01-20T10:02:48Z
has_accepted_license: '1'
intvolume: '        85'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 277-295
pmid: 1
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Algorithmica
publication_identifier:
  eissn:
  - 1432-0541
  issn:
  - 0178-4617
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A simple algorithm for higher-order Delaunay mosaics and alpha shapes
tmp:
  image: /images/cc_by.png
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  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2023'
...
---
_id: '12287'
abstract:
- lang: eng
  text: We present criteria for establishing a triangulation of a manifold. Given
    a manifold M, a simplicial complex A, and a map H from the underlying space of
    A to M, our criteria are presented in local coordinate charts for M, and ensure
    that H is a homeomorphism. These criteria do not require a differentiable structure,
    or even an explicit metric on M. No Delaunay property of A is assumed. The result
    provides a triangulation guarantee for algorithms that construct a simplicial
    complex by working in local coordinate patches. Because the criteria are easily
    verified in such a setting, they are expected to be of general use.
acknowledgement: "This work has been funded by the European Research Council under
  the European Union’s ERC Grant Agreement number 339025 GUDHI (Algorithmic Foundations
  of Geometric Understanding in Higher Dimensions). Arijit Ghosh is supported by Ramanujan
  Fellowship (No. SB/S2/RJN-064/2015). Part of this work was done when Arijit Ghosh
  was a Researcher at Max-Planck-Institute for Informatics, Germany, supported by
  the IndoGerman Max Planck Center for Computer Science (IMPECS). Mathijs Wintraecken
  also received funding from the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie grant agreement No. 754411 and the Austrian
  Science Fund (FWF): M-3073. A part of the results described in this paper were presented
  at SoCG 2018 and in [3]. \r\nOpen access funding provided by the Austrian Science
  Fund (FWF)."
article_processing_charge: No
article_type: original
author:
- first_name: Jean-Daniel
  full_name: Boissonnat, Jean-Daniel
  last_name: Boissonnat
- first_name: Ramsay
  full_name: Dyer, Ramsay
  last_name: Dyer
- first_name: Arijit
  full_name: Ghosh, Arijit
  last_name: Ghosh
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. Local criteria for triangulating
    general manifolds. <i>Discrete &#38; Computational Geometry</i>. 2023;69:156-191.
    doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>
  apa: Boissonnat, J.-D., Dyer, R., Ghosh, A., &#38; Wintraecken, M. (2023). Local
    criteria for triangulating general manifolds. <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>
  chicago: Boissonnat, Jean-Daniel, Ramsay Dyer, Arijit Ghosh, and Mathijs Wintraecken.
    “Local Criteria for Triangulating General Manifolds.” <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>.
  ieee: J.-D. Boissonnat, R. Dyer, A. Ghosh, and M. Wintraecken, “Local criteria for
    triangulating general manifolds,” <i>Discrete &#38; Computational Geometry</i>,
    vol. 69. Springer Nature, pp. 156–191, 2023.
  ista: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. 2023. Local criteria for triangulating
    general manifolds. Discrete &#38; Computational Geometry. 69, 156–191.
  mla: Boissonnat, Jean-Daniel, et al. “Local Criteria for Triangulating General Manifolds.”
    <i>Discrete &#38; Computational Geometry</i>, vol. 69, Springer Nature, 2023,
    pp. 156–91, doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>.
  short: J.-D. Boissonnat, R. Dyer, A. Ghosh, M. Wintraecken, Discrete &#38; Computational
    Geometry 69 (2023) 156–191.
corr_author: '1'
date_created: 2023-01-16T10:04:06Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2025-04-14T07:44:00Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-022-00431-7
ec_funded: 1
external_id:
  isi:
  - '000862193600001'
file:
- access_level: open_access
  checksum: 46352e0ee71e460848f88685ca852681
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T11:01:10Z
  date_updated: 2023-02-02T11:01:10Z
  file_id: '12488'
  file_name: 2023_DiscreteCompGeometry_Boissonnat.pdf
  file_size: 582850
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T11:01:10Z
has_accepted_license: '1'
intvolume: '        69'
isi: 1
keyword:
- Computational Theory and Mathematics
- Discrete Mathematics and Combinatorics
- Geometry and Topology
- Theoretical Computer Science
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 156-191
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: Discrete & Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local criteria for triangulating general manifolds
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 69
year: '2023'
...
---
_id: '12544'
abstract:
- lang: eng
  text: Geometry is crucial in our efforts to comprehend the structures and dynamics
    of biomolecules. For example, volume, surface area, and integrated mean and Gaussian
    curvature of the union of balls representing a molecule are used to quantify its
    interactions with the water surrounding it in the morphometric implicit solvent
    models. The Alpha Shape theory provides an accurate and reliable method for computing
    these geometric measures. In this paper, we derive homogeneous formulas for the
    expressions of these measures and their derivatives with respect to the atomic
    coordinates, and we provide algorithms that implement them into a new software
    package, AlphaMol. The only variables in these formulas are the interatomic distances,
    making them insensitive to translations and rotations. AlphaMol includes a sequential
    algorithm and a parallel algorithm. In the parallel version, we partition the
    atoms of the molecule of interest into 3D rectangular blocks, using a kd-tree
    algorithm. We then apply the sequential algorithm of AlphaMol to each block, augmented
    by a buffer zone to account for atoms whose ball representations may partially
    cover the block. The current parallel version of AlphaMol leads to a 20-fold speed-up
    compared to an independent serial implementation when using 32 processors. For
    instance, it takes 31 s to compute the geometric measures and derivatives of each
    atom in a viral capsid with more than 26 million atoms on 32 Intel processors
    running at 2.7 GHz. The presence of the buffer zones, however, leads to redundant
    computations, which ultimately limit the impact of using multiple processors.
    AlphaMol is available as an OpenSource software.
acknowledgement: "P.K. acknowledges support from the University of California Multicampus
  Research Programs and Initiatives (Grant No. M21PR3267) and from the NSF (Grant
  No.1760485). H.E. acknowledges support from the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation program, Grant No.
  788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31,
  and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry
  and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35.\r\nOpen Access
  is funded by the Austrian Science Fund (FWF)."
article_processing_charge: No
article_type: original
author:
- first_name: Patrice
  full_name: Koehl, Patrice
  last_name: Koehl
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: Koehl P, Akopyan A, Edelsbrunner H. Computing the volume, surface area, mean,
    and Gaussian curvatures of molecules and their derivatives. <i>Journal of Chemical
    Information and Modeling</i>. 2023;63(3):973-985. doi:<a href="https://doi.org/10.1021/acs.jcim.2c01346">10.1021/acs.jcim.2c01346</a>
  apa: Koehl, P., Akopyan, A., &#38; Edelsbrunner, H. (2023). Computing the volume,
    surface area, mean, and Gaussian curvatures of molecules and their derivatives.
    <i>Journal of Chemical Information and Modeling</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.jcim.2c01346">https://doi.org/10.1021/acs.jcim.2c01346</a>
  chicago: Koehl, Patrice, Arseniy Akopyan, and Herbert Edelsbrunner. “Computing the
    Volume, Surface Area, Mean, and Gaussian Curvatures of Molecules and Their Derivatives.”
    <i>Journal of Chemical Information and Modeling</i>. American Chemical Society,
    2023. <a href="https://doi.org/10.1021/acs.jcim.2c01346">https://doi.org/10.1021/acs.jcim.2c01346</a>.
  ieee: P. Koehl, A. Akopyan, and H. Edelsbrunner, “Computing the volume, surface
    area, mean, and Gaussian curvatures of molecules and their derivatives,” <i>Journal
    of Chemical Information and Modeling</i>, vol. 63, no. 3. American Chemical Society,
    pp. 973–985, 2023.
  ista: Koehl P, Akopyan A, Edelsbrunner H. 2023. Computing the volume, surface area,
    mean, and Gaussian curvatures of molecules and their derivatives. Journal of Chemical
    Information and Modeling. 63(3), 973–985.
  mla: Koehl, Patrice, et al. “Computing the Volume, Surface Area, Mean, and Gaussian
    Curvatures of Molecules and Their Derivatives.” <i>Journal of Chemical Information
    and Modeling</i>, vol. 63, no. 3, American Chemical Society, 2023, pp. 973–85,
    doi:<a href="https://doi.org/10.1021/acs.jcim.2c01346">10.1021/acs.jcim.2c01346</a>.
  short: P. Koehl, A. Akopyan, H. Edelsbrunner, Journal of Chemical Information and
    Modeling 63 (2023) 973–985.
corr_author: '1'
date_created: 2023-02-12T23:00:59Z
date_published: 2023-02-13T00:00:00Z
date_updated: 2025-04-15T07:16:52Z
day: '13'
ddc:
- '510'
- '540'
department:
- _id: HeEd
doi: 10.1021/acs.jcim.2c01346
ec_funded: 1
external_id:
  isi:
  - '000920370700001'
  pmid:
  - '36638318'
file:
- access_level: open_access
  checksum: 7d20562269edff1e31b9d6019d4983b0
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-16T12:21:13Z
  date_updated: 2023-08-16T12:21:13Z
  file_id: '14070'
  file_name: 2023_JCIM_Koehl.pdf
  file_size: 8069223
  relation: main_file
  success: 1
file_date_updated: 2023-08-16T12:21:13Z
has_accepted_license: '1'
intvolume: '        63'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 973-985
pmid: 1
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Journal of Chemical Information and Modeling
publication_identifier:
  eissn:
  - 1549-960X
  issn:
  - 1549-9596
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Computing the volume, surface area, mean, and Gaussian curvatures of molecules
  and their derivatives
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 63
year: '2023'
...
---
_id: '12548'
abstract:
- lang: eng
  text: The limited exchange between human communities is a key factor in preventing
    the spread of COVID-19. This paper introduces a digital framework that combines
    an integration of real mobility data at the country scale with a series of modeling
    techniques and visual capabilities that highlight mobility patterns before and
    during the pandemic. The findings not only significantly exhibit mobility trends
    and different degrees of similarities at regional and local levels but also provide
    potential insight into the emergence of a pandemic on human behavior patterns
    and their likely socio-economic impacts.
article_number: '00093'
article_processing_charge: No
author:
- first_name: Mohammad
  full_name: Forghani, Mohammad
  last_name: Forghani
- first_name: Christophe
  full_name: Claramunt, Christophe
  last_name: Claramunt
- first_name: Farid
  full_name: Karimipour, Farid
  id: 2A2BCDC4-CF62-11E9-BE5E-3B1EE6697425
  last_name: Karimipour
  orcid: 0000-0001-6746-4174
- first_name: Georg
  full_name: Heiler, Georg
  last_name: Heiler
citation:
  ama: 'Forghani M, Claramunt C, Karimipour F, Heiler G. Visual analytics of mobility
    network changes observed using mobile phone data during COVID-19 pandemic. In:
    <i>2022 IEEE International Conference on Data Mining Workshops</i>. Institute
    of Electrical and Electronics Engineers; 2023. doi:<a href="https://doi.org/10.1109/icdmw58026.2022.00093">10.1109/icdmw58026.2022.00093</a>'
  apa: 'Forghani, M., Claramunt, C., Karimipour, F., &#38; Heiler, G. (2023). Visual
    analytics of mobility network changes observed using mobile phone data during
    COVID-19 pandemic. In <i>2022 IEEE International Conference on Data Mining Workshops</i>.
    Orlando, FL, United States: Institute of Electrical and Electronics Engineers.
    <a href="https://doi.org/10.1109/icdmw58026.2022.00093">https://doi.org/10.1109/icdmw58026.2022.00093</a>'
  chicago: Forghani, Mohammad, Christophe Claramunt, Farid Karimipour, and Georg Heiler.
    “Visual Analytics of Mobility Network Changes Observed Using Mobile Phone Data
    during COVID-19 Pandemic.” In <i>2022 IEEE International Conference on Data Mining
    Workshops</i>. Institute of Electrical and Electronics Engineers, 2023. <a href="https://doi.org/10.1109/icdmw58026.2022.00093">https://doi.org/10.1109/icdmw58026.2022.00093</a>.
  ieee: M. Forghani, C. Claramunt, F. Karimipour, and G. Heiler, “Visual analytics
    of mobility network changes observed using mobile phone data during COVID-19 pandemic,”
    in <i>2022 IEEE International Conference on Data Mining Workshops</i>, Orlando,
    FL, United States, 2023.
  ista: 'Forghani M, Claramunt C, Karimipour F, Heiler G. 2023. Visual analytics of
    mobility network changes observed using mobile phone data during COVID-19 pandemic.
    2022 IEEE International Conference on Data Mining Workshops. ICDMW: Conference
    on Data Mining Workshops, 00093.'
  mla: Forghani, Mohammad, et al. “Visual Analytics of Mobility Network Changes Observed
    Using Mobile Phone Data during COVID-19 Pandemic.” <i>2022 IEEE International
    Conference on Data Mining Workshops</i>, 00093, Institute of Electrical and Electronics
    Engineers, 2023, doi:<a href="https://doi.org/10.1109/icdmw58026.2022.00093">10.1109/icdmw58026.2022.00093</a>.
  short: M. Forghani, C. Claramunt, F. Karimipour, G. Heiler, in:, 2022 IEEE International
    Conference on Data Mining Workshops, Institute of Electrical and Electronics Engineers,
    2023.
conference:
  end_date: 2022-12-01
  location: Orlando, FL, United States
  name: 'ICDMW: Conference on Data Mining Workshops'
  start_date: 2022-11-28
date_created: 2023-02-14T07:56:21Z
date_published: 2023-02-08T00:00:00Z
date_updated: 2024-10-21T06:01:25Z
day: '08'
ddc:
- '600'
department:
- _id: HeEd
doi: 10.1109/icdmw58026.2022.00093
external_id:
  isi:
  - '000971492200145'
file:
- access_level: open_access
  checksum: c253bee25e6dfe484f96662daa119cb6
  content_type: application/pdf
  creator: fkarimip
  date_created: 2023-02-14T07:58:26Z
  date_updated: 2023-02-14T07:58:26Z
  file_id: '12549'
  file_name: Visual Analysis_Mobility_COVID19 - SocDM2022.pdf
  file_size: 1183339
  relation: main_file
  success: 1
file_date_updated: 2023-02-14T07:58:26Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Submitted Version
publication: 2022 IEEE International Conference on Data Mining Workshops
publication_identifier:
  eisbn:
  - '9798350346091'
  eissn:
  - 2375-9259
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Visual analytics of mobility network changes observed using mobile phone data
  during COVID-19 pandemic
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2023'
...
---
_id: '12709'
abstract:
- lang: eng
  text: Given a finite set A ⊂ ℝ^d, let Cov_{r,k} denote the set of all points within
    distance r to at least k points of A. Allowing r and k to vary, we obtain a 2-parameter
    family of spaces that grow larger when r increases or k decreases, called the
    multicover bifiltration. Motivated by the problem of computing the homology of
    this bifiltration, we introduce two closely related combinatorial bifiltrations,
    one polyhedral and the other simplicial, which are both topologically equivalent
    to the multicover bifiltration and far smaller than a Čech-based model considered
    in prior work of Sheehy. Our polyhedral construction is a bifiltration of the
    rhomboid tiling of Edelsbrunner and Osang, and can be efficiently computed using
    a variant of an algorithm given by these authors as well. Using an implementation
    for dimension 2 and 3, we provide experimental results. Our simplicial construction
    is useful for understanding the polyhedral construction and proving its correctness.
acknowledgement: We thank the anonymous reviewers for many helpful comments and suggestions,
  which led to substantial improvements of the paper. The first two authors were supported
  by the Austrian Science Fund (FWF) grant number P 29984-N35 and W1230. The first
  author was partly supported by an Austrian Marshall Plan Scholarship, and by the
  Brummer & Partners MathDataLab. A conference version of this paper was presented
  at the 37th International Symposium on Computational Geometry (SoCG 2021). Open
  access funding provided by the Royal Institute of Technology.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: René
  full_name: Corbet, René
  last_name: Corbet
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
- first_name: Michael
  full_name: Lesnick, Michael
  last_name: Lesnick
- first_name: Georg F
  full_name: Osang, Georg F
  id: 464B40D6-F248-11E8-B48F-1D18A9856A87
  last_name: Osang
  orcid: 0000-0002-8882-5116
citation:
  ama: Corbet R, Kerber M, Lesnick M, Osang GF. Computing the multicover bifiltration.
    <i>Discrete and Computational Geometry</i>. 2023;70:376-405. doi:<a href="https://doi.org/10.1007/s00454-022-00476-8">10.1007/s00454-022-00476-8</a>
  apa: Corbet, R., Kerber, M., Lesnick, M., &#38; Osang, G. F. (2023). Computing the
    multicover bifiltration. <i>Discrete and Computational Geometry</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00454-022-00476-8">https://doi.org/10.1007/s00454-022-00476-8</a>
  chicago: Corbet, René, Michael Kerber, Michael Lesnick, and Georg F Osang. “Computing
    the Multicover Bifiltration.” <i>Discrete and Computational Geometry</i>. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/s00454-022-00476-8">https://doi.org/10.1007/s00454-022-00476-8</a>.
  ieee: R. Corbet, M. Kerber, M. Lesnick, and G. F. Osang, “Computing the multicover
    bifiltration,” <i>Discrete and Computational Geometry</i>, vol. 70. Springer Nature,
    pp. 376–405, 2023.
  ista: Corbet R, Kerber M, Lesnick M, Osang GF. 2023. Computing the multicover bifiltration.
    Discrete and Computational Geometry. 70, 376–405.
  mla: Corbet, René, et al. “Computing the Multicover Bifiltration.” <i>Discrete and
    Computational Geometry</i>, vol. 70, Springer Nature, 2023, pp. 376–405, doi:<a
    href="https://doi.org/10.1007/s00454-022-00476-8">10.1007/s00454-022-00476-8</a>.
  short: R. Corbet, M. Kerber, M. Lesnick, G.F. Osang, Discrete and Computational
    Geometry 70 (2023) 376–405.
date_created: 2023-03-05T23:01:06Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2025-07-10T12:01:57Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1007/s00454-022-00476-8
external_id:
  arxiv:
  - '2103.07823'
  isi:
  - '000936496800001'
  pmid:
  - '37581017'
file:
- access_level: open_access
  checksum: 71ce7e59f7ee4620acc704fecca620c2
  content_type: application/pdf
  creator: cchlebak
  date_created: 2023-03-07T14:40:14Z
  date_updated: 2023-03-07T14:40:14Z
  file_id: '12715'
  file_name: 2023_DisCompGeo_Corbet.pdf
  file_size: 1359323
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  success: 1
file_date_updated: 2023-03-07T14:40:14Z
has_accepted_license: '1'
intvolume: '        70'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 376-405
pmid: 1
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
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scopus_import: '1'
status: public
title: Computing the multicover bifiltration
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 70
year: '2023'
...
---
_id: '12763'
abstract:
- lang: eng
  text: 'Kleinjohann (Archiv der Mathematik 35(1):574–582, 1980; Mathematische Zeitschrift
    176(3), 327–344, 1981) and Bangert (Archiv der Mathematik 38(1):54–57, 1982) extended
    the reach rch(S) from subsets S of Euclidean space to the reach rchM(S) of subsets
    S of Riemannian manifolds M, where M is smooth (we’ll assume at least C3). Bangert
    showed that sets of positive reach in Euclidean space and Riemannian manifolds
    are very similar. In this paper we introduce a slight variant of Kleinjohann’s
    and Bangert’s extension and quantify the similarity between sets of positive reach
    in Euclidean space and Riemannian manifolds in a new way: Given p∈M and q∈S, we
    bound the local feature size (a local version of the reach) of its lifting to
    the tangent space via the inverse exponential map (exp−1p(S)) at q, assuming that
    rchM(S) and the geodesic distance dM(p,q) are bounded. These bounds are motivated
    by the importance of the reach and local feature size to manifold learning, topological
    inference, and triangulating manifolds and the fact that intrinsic approaches
    circumvent the curse of dimensionality.'
acknowledgement: "We thank Eddie Aamari, David Cohen-Steiner, Isa Costantini, Fred
  Chazal, Ramsay Dyer, André Lieutier, and Alef Sterk for discussion and Pierre Pansu
  for encouragement. We further acknowledge the anonymous reviewers whose comments
  helped improve the exposition.\r\nThe research leading to these results has received
  funding from the European Research Council (ERC) under the European Union’s Seventh
  Framework Programme (FP/2007-2013) / ERC Grant Agreement No. 339025 GUDHI (Algorithmic
  Foundations of Geometry Understanding in Higher Dimensions). The first author is
  further supported by the French government, through the 3IA Côte d’Azur Investments
  in the Future project managed by the National Research Agency (ANR) with the reference
  number ANR-19-P3IA-0002. The second author is supported by the European Union’s
  Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  Grant Agreement No. 754411 and the Austrian science fund (FWF) M-3073."
article_processing_charge: No
article_type: original
author:
- first_name: Jean Daniel
  full_name: Boissonnat, Jean Daniel
  last_name: Boissonnat
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat JD, Wintraecken M. The reach of subsets of manifolds. <i>Journal
    of Applied and Computational Topology</i>. 2023;7:619-641. doi:<a href="https://doi.org/10.1007/s41468-023-00116-x">10.1007/s41468-023-00116-x</a>
  apa: Boissonnat, J. D., &#38; Wintraecken, M. (2023). The reach of subsets of manifolds.
    <i>Journal of Applied and Computational Topology</i>. Springer Nature. <a href="https://doi.org/10.1007/s41468-023-00116-x">https://doi.org/10.1007/s41468-023-00116-x</a>
  chicago: Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets
    of Manifolds.” <i>Journal of Applied and Computational Topology</i>. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/s41468-023-00116-x">https://doi.org/10.1007/s41468-023-00116-x</a>.
  ieee: J. D. Boissonnat and M. Wintraecken, “The reach of subsets of manifolds,”
    <i>Journal of Applied and Computational Topology</i>, vol. 7. Springer Nature,
    pp. 619–641, 2023.
  ista: Boissonnat JD, Wintraecken M. 2023. The reach of subsets of manifolds. Journal
    of Applied and Computational Topology. 7, 619–641.
  mla: Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets of
    Manifolds.” <i>Journal of Applied and Computational Topology</i>, vol. 7, Springer
    Nature, 2023, pp. 619–41, doi:<a href="https://doi.org/10.1007/s41468-023-00116-x">10.1007/s41468-023-00116-x</a>.
  short: J.D. Boissonnat, M. Wintraecken, Journal of Applied and Computational Topology
    7 (2023) 619–641.
corr_author: '1'
date_created: 2023-03-26T22:01:08Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2025-04-14T07:44:01Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/s41468-023-00116-x
ec_funded: 1
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://inserm.hal.science/INRIA-SACLAY/hal-04083524v1
month: '09'
oa: 1
oa_version: Submitted Version
page: 619-641
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: Journal of Applied and Computational Topology
publication_identifier:
  eissn:
  - 2367-1734
  issn:
  - 2367-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The reach of subsets of manifolds
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2023'
...
---
_id: '12764'
abstract:
- lang: eng
  text: We study a new discretization of the Gaussian curvature for polyhedral surfaces.
    This discrete Gaussian curvature is defined on each conical singularity of a polyhedral
    surface as the quotient of the angle defect and the area of the Voronoi cell corresponding
    to the singularity. We divide polyhedral surfaces into discrete conformal classes
    using a generalization of discrete conformal equivalence pioneered by Feng Luo.
    We subsequently show that, in every discrete conformal class, there exists a polyhedral
    surface with constant discrete Gaussian curvature. We also provide explicit examples
    to demonstrate that this surface is in general not unique.
acknowledgement: Open access funding provided by the Austrian Science Fund (FWF).
  This research was supported by the FWF grant, Project number I4245-N35, and by the
  Deutsche Forschungsgemeinschaft (DFG - German Research Foundation) - Project-ID
  195170736 - TRR109.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Hana
  full_name: Kourimska, Hana
  id: D9B8E14C-3C26-11EA-98F5-1F833DDC885E
  last_name: Kourimska
  orcid: 0000-0001-7841-0091
citation:
  ama: Kourimska H. Discrete yamabe problem for polyhedral surfaces. <i>Discrete and
    Computational Geometry</i>. 2023;70:123-153. doi:<a href="https://doi.org/10.1007/s00454-023-00484-2">10.1007/s00454-023-00484-2</a>
  apa: Kourimska, H. (2023). Discrete yamabe problem for polyhedral surfaces. <i>Discrete
    and Computational Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00454-023-00484-2">https://doi.org/10.1007/s00454-023-00484-2</a>
  chicago: Kourimska, Hana. “Discrete Yamabe Problem for Polyhedral Surfaces.” <i>Discrete
    and Computational Geometry</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00454-023-00484-2">https://doi.org/10.1007/s00454-023-00484-2</a>.
  ieee: H. Kourimska, “Discrete yamabe problem for polyhedral surfaces,” <i>Discrete
    and Computational Geometry</i>, vol. 70. Springer Nature, pp. 123–153, 2023.
  ista: Kourimska H. 2023. Discrete yamabe problem for polyhedral surfaces. Discrete
    and Computational Geometry. 70, 123–153.
  mla: Kourimska, Hana. “Discrete Yamabe Problem for Polyhedral Surfaces.” <i>Discrete
    and Computational Geometry</i>, vol. 70, Springer Nature, 2023, pp. 123–53, doi:<a
    href="https://doi.org/10.1007/s00454-023-00484-2">10.1007/s00454-023-00484-2</a>.
  short: H. Kourimska, Discrete and Computational Geometry 70 (2023) 123–153.
corr_author: '1'
date_created: 2023-03-26T22:01:09Z
date_published: 2023-07-01T00:00:00Z
date_updated: 2025-04-23T08:59:15Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-023-00484-2
external_id:
  isi:
  - '000948148000001'
  pmid:
  - '37292248'
file:
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  date_created: 2023-10-04T11:46:24Z
  date_updated: 2023-10-04T11:46:24Z
  file_id: '14396'
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  file_size: 1026683
  relation: main_file
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file_date_updated: 2023-10-04T11:46:24Z
has_accepted_license: '1'
intvolume: '        70'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 123-153
pmid: 1
project:
- _id: 26AD5D90-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I04245
  name: Algebraic Footprints of Geometric Features in Homology
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Discrete yamabe problem for polyhedral surfaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 70
year: '2023'
...
---
_id: '12833'
abstract:
- lang: eng
  text: 'The input to the token swapping problem is a graph with vertices v1, v2,
    . . . , vn, and n tokens with labels 1,2, . . . , n, one on each vertex. The goal
    is to get token i to vertex vi for all i= 1, . . . , n using a minimum number
    of swaps, where a swap exchanges the tokens on the endpoints of an edge.Token
    swapping on a tree, also known as “sorting with a transposition tree,” is not
    known to be in P nor NP-complete. We present some partial results: 1. An optimum
    swap sequence may need to perform a swap on a leaf vertex that has the correct
    token (a “happy leaf”), disproving a conjecture of Vaughan. 2. Any algorithm that
    fixes happy leaves—as all known approximation algorithms for the problem do—has
    approximation factor at least 4/3. Furthermore, the two best-known 2-approximation
    algorithms have approximation factor exactly 2. 3. A generalized problem—weighted
    coloured token swapping—is NP-complete on trees, but solvable in polynomial time
    on paths and stars. In this version, tokens and vertices have colours, and colours
    have weights. The goal is to get every token to a vertex of the same colour, and
    the cost of a swap is the sum of the weights of the two tokens involved.'
acknowledgement: "This work was begun at the University of Waterloo and was partially
  supported by the Natural Sciences and Engineering Council of Canada (NSERC).\r\n"
article_number: '9'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ahmad
  full_name: Biniaz, Ahmad
  last_name: Biniaz
- first_name: Kshitij
  full_name: Jain, Kshitij
  last_name: Jain
- first_name: Anna
  full_name: Lubiw, Anna
  last_name: Lubiw
- first_name: Zuzana
  full_name: Masárová, Zuzana
  id: 45CFE238-F248-11E8-B48F-1D18A9856A87
  last_name: Masárová
  orcid: 0000-0002-6660-1322
- first_name: Tillmann
  full_name: Miltzow, Tillmann
  last_name: Miltzow
- first_name: Debajyoti
  full_name: Mondal, Debajyoti
  last_name: Mondal
- first_name: Anurag Murty
  full_name: Naredla, Anurag Murty
  last_name: Naredla
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Alexi
  full_name: Turcotte, Alexi
  last_name: Turcotte
citation:
  ama: Biniaz A, Jain K, Lubiw A, et al. Token swapping on trees. <i>Discrete Mathematics
    and Theoretical Computer Science</i>. 2023;24(2). doi:<a href="https://doi.org/10.46298/DMTCS.8383">10.46298/DMTCS.8383</a>
  apa: Biniaz, A., Jain, K., Lubiw, A., Masárová, Z., Miltzow, T., Mondal, D., … Turcotte,
    A. (2023). Token swapping on trees. <i>Discrete Mathematics and Theoretical Computer
    Science</i>. EPI Sciences. <a href="https://doi.org/10.46298/DMTCS.8383">https://doi.org/10.46298/DMTCS.8383</a>
  chicago: Biniaz, Ahmad, Kshitij Jain, Anna Lubiw, Zuzana Masárová, Tillmann Miltzow,
    Debajyoti Mondal, Anurag Murty Naredla, Josef Tkadlec, and Alexi Turcotte. “Token
    Swapping on Trees.” <i>Discrete Mathematics and Theoretical Computer Science</i>.
    EPI Sciences, 2023. <a href="https://doi.org/10.46298/DMTCS.8383">https://doi.org/10.46298/DMTCS.8383</a>.
  ieee: A. Biniaz <i>et al.</i>, “Token swapping on trees,” <i>Discrete Mathematics
    and Theoretical Computer Science</i>, vol. 24, no. 2. EPI Sciences, 2023.
  ista: Biniaz A, Jain K, Lubiw A, Masárová Z, Miltzow T, Mondal D, Naredla AM, Tkadlec
    J, Turcotte A. 2023. Token swapping on trees. Discrete Mathematics and Theoretical
    Computer Science. 24(2), 9.
  mla: Biniaz, Ahmad, et al. “Token Swapping on Trees.” <i>Discrete Mathematics and
    Theoretical Computer Science</i>, vol. 24, no. 2, 9, EPI Sciences, 2023, doi:<a
    href="https://doi.org/10.46298/DMTCS.8383">10.46298/DMTCS.8383</a>.
  short: A. Biniaz, K. Jain, A. Lubiw, Z. Masárová, T. Miltzow, D. Mondal, A.M. Naredla,
    J. Tkadlec, A. Turcotte, Discrete Mathematics and Theoretical Computer Science
    24 (2023).
date_created: 2023-04-16T22:01:08Z
date_published: 2023-01-18T00:00:00Z
date_updated: 2025-01-20T14:05:09Z
day: '18'
ddc:
- '000'
department:
- _id: KrCh
- _id: HeEd
- _id: UlWa
doi: 10.46298/DMTCS.8383
external_id:
  arxiv:
  - '1903.06981'
file:
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  creator: dernst
  date_created: 2023-04-17T08:10:28Z
  date_updated: 2023-04-17T08:10:28Z
  file_id: '12844'
  file_name: 2022_DMTCS_Biniaz.pdf
  file_size: 2072197
  relation: main_file
  success: 1
file_date_updated: 2023-04-17T08:10:28Z
has_accepted_license: '1'
intvolume: '        24'
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Discrete Mathematics and Theoretical Computer Science
publication_identifier:
  eissn:
  - 1365-8050
  issn:
  - 1462-7264
publication_status: published
publisher: EPI Sciences
quality_controlled: '1'
related_material:
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scopus_import: '1'
status: public
title: Token swapping on trees
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2023'
...
---
_id: '13048'
abstract:
- lang: eng
  text: In this paper we introduce a pruning of the medial axis called the (λ,α)-medial
    axis (axλα). We prove that the (λ,α)-medial axis of a set K is stable in a Gromov-Hausdorff
    sense under weak assumptions. More formally we prove that if K and K′ are close
    in the Hausdorff (dH) sense then the (λ,α)-medial axes of K and K′ are close as
    metric spaces, that is the Gromov-Hausdorff distance (dGH) between the two is
    1/4-Hölder in the sense that dGH (axλα(K),axλα(K′)) ≲ dH(K,K′)1/4. The Hausdorff
    distance between the two medial axes is also bounded, by dH (axλα(K),λα(K′)) ≲
    dH(K,K′)1/2. These quantified stability results provide guarantees for practical
    computations of medial axes from approximations. Moreover, they provide key ingredients
    for studying the computability of the medial axis in the context of computable
    analysis.
acknowledgement: "We are greatly indebted to Erin Chambers for posing a number of
  questions that eventually led to this paper. We would also like to thank the other
  organizers of the workshop on ‘Algorithms\r\nfor the medial axis’. We are also indebted
  to Tatiana Ezubova for helping with the search for and translation of Russian literature.
  The second author thanks all members of the Edelsbrunner and Datashape groups for
  the atmosphere in which the research was conducted.\r\nThe research leading to these
  results has received funding from the European Research Council (ERC) under the
  European Union’s Seventh Framework Programme (FP/2007-2013) / ERC Grant Agreement
  No. 339025 GUDHI (Algorithmic Foundations of Geometry Understanding in Higher Dimensions).
  Supported by the European Union’s Horizon 2020 research and innovation programme
  under the Marie Skłodowska-Curie grant agreement No. 754411. The Austrian science
  fund (FWF) M-3073."
article_processing_charge: No
arxiv: 1
author:
- first_name: André
  full_name: Lieutier, André
  last_name: Lieutier
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: 'Lieutier A, Wintraecken M. Hausdorff and Gromov-Hausdorff stable subsets of
    the medial axis. In: <i>Proceedings of the 55th Annual ACM Symposium on Theory
    of Computing</i>. Association for Computing Machinery; 2023:1768-1776. doi:<a
    href="https://doi.org/10.1145/3564246.3585113">10.1145/3564246.3585113</a>'
  apa: 'Lieutier, A., &#38; Wintraecken, M. (2023). Hausdorff and Gromov-Hausdorff
    stable subsets of the medial axis. In <i>Proceedings of the 55th Annual ACM Symposium
    on Theory of Computing</i> (pp. 1768–1776). Orlando, FL, United States: Association
    for Computing Machinery. <a href="https://doi.org/10.1145/3564246.3585113">https://doi.org/10.1145/3564246.3585113</a>'
  chicago: Lieutier, André, and Mathijs Wintraecken. “Hausdorff and Gromov-Hausdorff
    Stable Subsets of the Medial Axis.” In <i>Proceedings of the 55th Annual ACM Symposium
    on Theory of Computing</i>, 1768–76. Association for Computing Machinery, 2023.
    <a href="https://doi.org/10.1145/3564246.3585113">https://doi.org/10.1145/3564246.3585113</a>.
  ieee: A. Lieutier and M. Wintraecken, “Hausdorff and Gromov-Hausdorff stable subsets
    of the medial axis,” in <i>Proceedings of the 55th Annual ACM Symposium on Theory
    of Computing</i>, Orlando, FL, United States, 2023, pp. 1768–1776.
  ista: 'Lieutier A, Wintraecken M. 2023. Hausdorff and Gromov-Hausdorff stable subsets
    of the medial axis. Proceedings of the 55th Annual ACM Symposium on Theory of
    Computing. STOC: Symposium on Theory of Computing, 1768–1776.'
  mla: Lieutier, André, and Mathijs Wintraecken. “Hausdorff and Gromov-Hausdorff Stable
    Subsets of the Medial Axis.” <i>Proceedings of the 55th Annual ACM Symposium on
    Theory of Computing</i>, Association for Computing Machinery, 2023, pp. 1768–76,
    doi:<a href="https://doi.org/10.1145/3564246.3585113">10.1145/3564246.3585113</a>.
  short: A. Lieutier, M. Wintraecken, in:, Proceedings of the 55th Annual ACM Symposium
    on Theory of Computing, Association for Computing Machinery, 2023, pp. 1768–1776.
conference:
  end_date: 2023-06-23
  location: Orlando, FL, United States
  name: 'STOC: Symposium on Theory of Computing'
  start_date: 2023-06-20
corr_author: '1'
date_created: 2023-05-22T08:02:02Z
date_published: 2023-06-02T00:00:00Z
date_updated: 2025-09-09T12:26:49Z
day: '02'
department:
- _id: HeEd
doi: 10.1145/3564246.3585113
ec_funded: 1
external_id:
  arxiv:
  - '2303.04014'
  isi:
  - '001064640700143'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2303.04014
month: '06'
oa: 1
oa_version: Preprint
page: 1768-1776
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: Proceedings of the 55th Annual ACM Symposium on Theory of Computing
publication_identifier:
  isbn:
  - '9781450399135'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hausdorff and Gromov-Hausdorff stable subsets of the medial axis
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2023'
...
---
_id: '13134'
abstract:
- lang: eng
  text: We propose a characterization of discrete analytical spheres, planes and lines
    in the body-centered cubic (BCC) grid, both in the Cartesian and in the recently
    proposed alternative compact coordinate system, in which each integer triplet
    addresses some voxel in the grid. We define spheres and planes through double
    Diophantine inequalities and investigate their relevant topological features,
    such as functionality or the interrelation between the thickness of the objects
    and their connectivity and separation properties. We define lines as the intersection
    of planes. The number of the planes (up to six) is equal to the number of the
    pairs of faces of a BCC voxel that are parallel to the line.
acknowledgement: The first author has been partially supported by the Ministry of
  Science, Technological Development and Innovation of the Republic of Serbia through
  the project no. 451-03-47/2023-01/200156. The fourth author is funded by the DFG
  Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’,
  Austrian Science Fund (FWF), grant no. I 02979-N35.
article_number: '109693'
article_processing_charge: No
article_type: original
author:
- first_name: Lidija
  full_name: Čomić, Lidija
  last_name: Čomić
- first_name: Gaëlle
  full_name: Largeteau-Skapin, Gaëlle
  last_name: Largeteau-Skapin
- first_name: Rita
  full_name: Zrour, Rita
  last_name: Zrour
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Eric
  full_name: Andres, Eric
  last_name: Andres
citation:
  ama: Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. Discrete analytical
    objects in the body-centered cubic grid. <i>Pattern Recognition</i>. 2023;142(10).
    doi:<a href="https://doi.org/10.1016/j.patcog.2023.109693">10.1016/j.patcog.2023.109693</a>
  apa: Čomić, L., Largeteau-Skapin, G., Zrour, R., Biswas, R., &#38; Andres, E. (2023).
    Discrete analytical objects in the body-centered cubic grid. <i>Pattern Recognition</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.patcog.2023.109693">https://doi.org/10.1016/j.patcog.2023.109693</a>
  chicago: Čomić, Lidija, Gaëlle Largeteau-Skapin, Rita Zrour, Ranita Biswas, and
    Eric Andres. “Discrete Analytical Objects in the Body-Centered Cubic Grid.” <i>Pattern
    Recognition</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.patcog.2023.109693">https://doi.org/10.1016/j.patcog.2023.109693</a>.
  ieee: L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, and E. Andres, “Discrete
    analytical objects in the body-centered cubic grid,” <i>Pattern Recognition</i>,
    vol. 142, no. 10. Elsevier, 2023.
  ista: Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. 2023. Discrete analytical
    objects in the body-centered cubic grid. Pattern Recognition. 142(10), 109693.
  mla: Čomić, Lidija, et al. “Discrete Analytical Objects in the Body-Centered Cubic
    Grid.” <i>Pattern Recognition</i>, vol. 142, no. 10, 109693, Elsevier, 2023, doi:<a
    href="https://doi.org/10.1016/j.patcog.2023.109693">10.1016/j.patcog.2023.109693</a>.
  short: L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, E. Andres, Pattern Recognition
    142 (2023).
corr_author: '1'
date_created: 2023-06-18T22:00:45Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-04-15T07:45:32Z
day: '01'
department:
- _id: HeEd
doi: 10.1016/j.patcog.2023.109693
external_id:
  isi:
  - '001013526000001'
intvolume: '       142'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
project:
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
- _id: 0aa4bc98-070f-11eb-9043-e6fff9c6a316
  grant_number: I4887
  name: Persistent Homology, Algorithms and Stochastic Geometry
publication: Pattern Recognition
publication_identifier:
  issn:
  - 0031-3203
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Discrete analytical objects in the body-centered cubic grid
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2023'
...
---
_id: '13165'
abstract:
- lang: eng
  text: "A graph G=(V, E) is called fully regular if for every independent set I c
    V, the number of vertices in V\\I  that are not connected to any element of I
    depends only on the size of I. A linear ordering of the vertices of G is called
    successive if for every i, the first i vertices induce a connected subgraph of
    G. We give an explicit formula for the number of successive vertex orderings of
    a fully regular graph.\r\nAs an application of our results, we give alternative
    proofs of two theorems of Stanley and Gao & Peng, determining the number of linear
    edge orderings of complete graphs and complete bipartite graphs, respectively,
    with the property that the first i edges induce a connected subgraph.\r\nAs another
    application, we give a simple product formula for the number of linear orderings
    of the hyperedges of a complete 3-partite 3-uniform hypergraph such that, for
    every i, the first i hyperedges induce a connected subgraph. We found similar
    formulas for complete (non-partite) 3-uniform hypergraphs and in another closely
    related case, but we managed to verify them only when the number of vertices is
    small."
article_number: '105776'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Lixing
  full_name: Fang, Lixing
  last_name: Fang
- first_name: Hao
  full_name: Huang, Hao
  last_name: Huang
- first_name: János
  full_name: Pach, János
  id: E62E3130-B088-11EA-B919-BF823C25FEA4
  last_name: Pach
- first_name: Gábor
  full_name: Tardos, Gábor
  last_name: Tardos
- first_name: Junchi
  full_name: Zuo, Junchi
  last_name: Zuo
citation:
  ama: Fang L, Huang H, Pach J, Tardos G, Zuo J. Successive vertex orderings of fully
    regular graphs. <i>Journal of Combinatorial Theory Series A</i>. 2023;199(10).
    doi:<a href="https://doi.org/10.1016/j.jcta.2023.105776">10.1016/j.jcta.2023.105776</a>
  apa: Fang, L., Huang, H., Pach, J., Tardos, G., &#38; Zuo, J. (2023). Successive
    vertex orderings of fully regular graphs. <i>Journal of Combinatorial Theory.
    Series A</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcta.2023.105776">https://doi.org/10.1016/j.jcta.2023.105776</a>
  chicago: Fang, Lixing, Hao Huang, János Pach, Gábor Tardos, and Junchi Zuo. “Successive
    Vertex Orderings of Fully Regular Graphs.” <i>Journal of Combinatorial Theory.
    Series A</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.jcta.2023.105776">https://doi.org/10.1016/j.jcta.2023.105776</a>.
  ieee: L. Fang, H. Huang, J. Pach, G. Tardos, and J. Zuo, “Successive vertex orderings
    of fully regular graphs,” <i>Journal of Combinatorial Theory. Series A</i>, vol.
    199, no. 10. Elsevier, 2023.
  ista: Fang L, Huang H, Pach J, Tardos G, Zuo J. 2023. Successive vertex orderings
    of fully regular graphs. Journal of Combinatorial Theory. Series A. 199(10), 105776.
  mla: Fang, Lixing, et al. “Successive Vertex Orderings of Fully Regular Graphs.”
    <i>Journal of Combinatorial Theory. Series A</i>, vol. 199, no. 10, 105776, Elsevier,
    2023, doi:<a href="https://doi.org/10.1016/j.jcta.2023.105776">10.1016/j.jcta.2023.105776</a>.
  short: L. Fang, H. Huang, J. Pach, G. Tardos, J. Zuo, Journal of Combinatorial Theory.
    Series A 199 (2023).
corr_author: '1'
date_created: 2023-06-25T22:00:45Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-09-09T12:30:39Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1016/j.jcta.2023.105776
external_id:
  arxiv:
  - '2206.13592'
  isi:
  - '001144487800001'
file:
- access_level: open_access
  checksum: 9eebc213b4182a66063a99083ff5bd04
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-30T12:03:10Z
  date_updated: 2024-01-30T12:03:10Z
  file_id: '14902'
  file_name: 2023_JourCombinatiorialTheory_Fang.pdf
  file_size: 352555
  relation: main_file
  success: 1
file_date_updated: 2024-01-30T12:03:10Z
has_accepted_license: '1'
intvolume: '       199'
isi: 1
issue: '10'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '10'
oa: 1
oa_version: Published Version
publication: Journal of Combinatorial Theory. Series A
publication_identifier:
  eissn:
  - 1096-0899
  issn:
  - 0097-3165
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Successive vertex orderings of fully regular graphs
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 199
year: '2023'
...
