Chatterjee K, Henzinger TA, Jobstmann B, Singh R. QUASY: quantitative synthesis tool. In: Vol 6605. Springer; 2011:267-271. doi:10.1007/978-3-642-19835-9_24
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Chen C, Kerber M. An output sensitive algorithm for persistent homology. In: ACM; 2011:207-216. doi:10.1145/1998196.1998228
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Chatterjee K, Henzinger TA, Tracol M. The decidability frontier for probabilistic automata on infinite words.
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arXiv: 1104.0127

Abbot P, Abe J, Alcock J, et al. Inclusive fitness theory and eusociality. Nature. 2011;471(7339):-. doi:10.1038/nature09831
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Sixt MK, Parent C. Cells on the move in Philadelphia. Molecular Biology and Evolution. 2011;22(6):724. doi:10.1091/mbc.E10-12-0958
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Tkadik G, Walczak A. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 2011;23(15). doi:10.1088/0953-8984/23/15/153102
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Krens G, Möllmert S, Heisenberg C-PJ. Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. 2011;108(3):-. doi:10.1073/pnas.1010767108
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Kupczok A. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 2011;60(2):218-225. doi:10.1093/sysbio/syq086
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Pernia-Andrade A, Jonas PM. The multiple faces of RIM. Neuron. 2011;69(2):185-187. doi:10.1016/j.neuron.2011.01.010
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Stockinger P, Heisenberg C-PJ, Maître J-L. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 2011;138(21):4673-4683. doi:10.1242/dev.071233
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Polechova J, Barton NH. Genetic drift widens the expected cline but narrows the expected cline width. Genetics. 2011;189(1):227-235. doi:10.1534/genetics.111.129817
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Barton NH, Etheridge A. The relation between reproductive value and genetic contribution. Genetics. 2011;188(4):953-973. doi:10.1534/genetics.111.127555
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de Vladar H, Barton NH. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 2011;26(8):424-432. doi:10.1016/j.tree.2011.04.002
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Maître J-L, Heisenberg C-PJ. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 2011;23(5):508-514. doi:10.1016/j.ceb.2011.07.004
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Janovjak HL, Sandoz G, Isacoff E. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2011;2(232):1-6. doi:10.1038/ncomms1231
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Plachta N, Bollenbach MT, Pease S, Fraser S, Pantazis P. Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. Nature Cell Biology. 2011;13(2):117-123. doi:10.1038/ncb2154
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Sixt MK, Lämmermann T. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 2011;769:149-165. doi:10.1007/978-1-61779-207-6_11
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Palero F, Guerao G, Clark P, Abello P. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 2011;91(2):485-492. doi:10.1017/S0025315410000287
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Fasy BT. The difference in length of curves in R^n. Acta Sci Math (Szeged). 2011;77(1-2):359-367.
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Edelsbrunner H, Kerber M. Covering and packing with spheres by diagonal distortion in R^n. In: Calude C, Rozenberg G, Salomaa A, eds. Rainbow of Computer Science. Vol 6570. Dedicated to Hermann Maurer on the Occasion of His 70th Birthday. Springer; 2011:20-35. doi:10.1007/978-3-642-19391-0_2
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Henzinger TA, Jobstmann B, Wolf V. Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. 2011;22(4):823-841. doi:10.1142/S0129054111008441
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Chatterjee K, Henzinger TA, Prabhu V. Timed parity games: Complexity and robustness. Logical Methods in Computer Science. 2011;7(4). doi:10.2168/LMCS-7(4:8)2011
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Wang B, Edelsbrunner H, Morozov D. Computing elevation maxima by searching the Gauss sphere. Journal of Experimental Algorithmics. 2011;16(2.2):1-13. doi:10.1145/1963190.1970375
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Wagner H, Chen C, Vuçini E. Efficient computation of persistent homology for cubical data. In: Peikert R, Hauser H, Carr H, Fuchs R, eds. Topological Methods in Data Analysis and Visualization II. Springer; 2011:91-106. doi:10.1007/978-3-642-23175-9_7
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Chen C, Kerber M. Persistent homology computation with a twist. In: TU Dortmund; 2011:197-200.
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Raveendran K, Wojtan C, Turk G. Hybrid smoothed particle hydrodynamics. In: Spencer S, ed. ACM; 2011:33-42. doi:10.1145/2019406.2019411
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Wojtan C, Müller Fischer M, Brochu T. Liquid simulation with mesh-based surface tracking. In: ACM; 2011. doi:10.1145/2037636.2037644
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Lohse K, Harrison R, Barton NH. A general method for calculating likelihoods under the coalescent process. Genetics. 2011;189(3):977-987. doi:10.1534/genetics.111.129569
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Zheng Y, Gu S, Edelsbrunner H, Tomasi C, Benfey P. Detailed Reconstruction of 3D Plant Root Shape. IEEE; 2011. doi:10.1109/ICCV.2011.6126475
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Chen C, Edelsbrunner H. Diffusion runs low on persistence fast. In: Proceedings of the IEEE International Conference on Computer Vision. IEEE; 2011. doi:10.1109/ICCV.2011.6126271
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Edelsbrunner H. Alpha shapes - a survey. In: van de Weygaert R, Vegter G, Ritzerveld J, Icke V, eds. Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings. Springer.
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Almagor S, Boker U, Kupferman O. What’s decidable about weighted automata . In: Vol 6996. Springer; 2011:482-491. doi:10.1007/978-3-642-24372-1_37
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Alur R, Cerny P. Streaming transducers for algorithmic verification of single pass list processing programs. In: Vol 46. ACM; 2011:599-610. doi:10.1145/1926385.1926454
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Piskac R, Wies T. Decision procedures for automating termination proofs. In: Jhala R, Schmidt D, eds. Vol 6538. Springer; 2011:371-386. doi:10.1007/978-3-642-18275-4_26
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Wang Z, Lampert C, Mülling K, Schölkopf B, Peters J. Learning anticipation policies for robot table tennis. In: IEEE; 2011:332-337. doi:10.1109/IROS.2011.6094892
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Chatterjee K, De Alfaro L, Pritam R. Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv. 2011.
LibreCat: https://research-explorer.ista.ac.at/record/3339
arXiv: 1107.2132

Chatterjee K, Henzinger MH, Joglekar M, Nisarg S. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. In: Gopalakrishnan G, Qadeer S, eds. Vol 6806. Springer; 2011:260-276. doi:10.1007/978-3-642-22110-1_21
LibreCat: https://research-explorer.ista.ac.at/record/3342
DOI: 10.1007/978-3-642-22110-1_21
arXiv: 1104.3348

Chatterjee K, Fijalkow N. Finitary languages. In: Vol 6638. Springer; 2011:216-226. doi:10.1007/978-3-642-21254-3_16
LibreCat: https://research-explorer.ista.ac.at/record/3347
DOI: 10.1007/978-3-642-21254-3_16
arXiv: 1101.1727

Brázdil T, Broeek V, Chatterjee K, Forejt V, Kudera A. Two views on multiple mean payoff objectives in Markov Decision Processes. In: IEEE; 2011. doi:10.1109/LICS.2011.10
LibreCat: https://research-explorer.ista.ac.at/record/3346
DOI: 10.1109/LICS.2011.10

Chatterjee K, Prabhu V. Synthesis of memory efficient real time controllers for safety objectives. In: Springer; 2011:221-230. doi:10.1145/1967701.1967734
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Chatterjee K. Graph games with reachability objectives. In: Delzanno G, Potapov I, eds. Vol 6945. Springer; 2011:1-1. doi:10.1007/978-3-642-24288-5_1
LibreCat: https://research-explorer.ista.ac.at/record/3344
DOI: 10.1007/978-3-642-24288-5_1

Chatterjee K, Henzinger MH. Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification. In: SIAM; 2011:1318-1336. doi:10.1137/1.9781611973082.101
LibreCat: https://research-explorer.ista.ac.at/record/3343
DOI: 10.1137/1.9781611973082.101

Boker U, Henzinger TA. Determinizing discounted-sum automata. In: Vol 12. Springer; 2011:82-96. doi:10.4230/LIPIcs.CSL.2011.82
LibreCat: https://research-explorer.ista.ac.at/record/3360
DOI: 10.4230/LIPIcs.CSL.2011.82

Cerny P, Chatterjee K, Henzinger TA. The complexity of quantitative information flow problems. In: IEEE; 2011:205-217. doi:10.1109/CSF.2011.21
LibreCat: https://research-explorer.ista.ac.at/record/3361
DOI: 10.1109/CSF.2011.21

Henzinger TA, Singh V, Wies T, Zufferey D. Scheduling large jobs by abstraction refinement. In: ACM; 2011:329-342. doi:10.1145/1966445.1966476
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DOI: 10.1145/1966445.1966476

Cerny P, Henzinger TA. From boolean to quantitative synthesis. In: ACM; 2011:149-154. doi:10.1145/2038642.2038666
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DOI: 10.1145/2038642.2038666

Chatterjee K, Henzinger TA, Horn F. The complexity of request-response games. In: Dediu A-H, Inenaga S, Martín-Vide C, eds. Vol 6638. Springer; 2011:227-237. doi:10.1007/978-3-642-21254-3_17
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DOI: 10.1007/978-3-642-21254-3_17

Row R, Maître J-L, Martin B, Stockinger P, Heisenberg C-PJ, Kimelman D. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 2011;354(1):102-110. doi:10.1016/j.ydbio.2011.03.025
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PMID: 1463614

Bollenbach MT, Kishony R. Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. 2011;42(4):413-425. doi:10.1016/j.molcel.2011.04.016
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DOI: 10.1016/j.molcel.2011.04.016

Logeswaran S, Barton NH. Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. 2011;93(3):221-232. doi:10.1017/S0016672311000115
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Edelsbrunner H, Morozov D, Patel A. Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. 2011;11(3):345-361. doi:10.1007/s10208-011-9090-8
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Bendich P, Harer J. Persistent intersection homology. Foundations of Computational Mathematics. 2011;11(3):305-336. doi:10.1007/s10208-010-9081-1
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Ugelvig LV, Nielsen P, Boomsma J, Nash D. Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. 2011;11(201). doi:10.1186/1471-2148-11-201
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Tkadik G, Garrigan P, Ratliff C, et al. Natural images from the birthplace of the human eye. PLoS One. 2011;6(6). doi:10.1371/journal.pone.0020409
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Kupczok A. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 2011;11(205). doi:10.1186/1471-2148-11-205
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Blaschko M, Shelton J, Bartels A, Lampert C, Gretton A. Semi supervised kernel canonical correlation analysis with application to human fMRI. Pattern Recognition Letters. 2011;32(11):1572-1583. doi:10.1016/j.patrec.2011.02.011
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DOI: 10.1016/j.patrec.2011.02.011

Kroemer O, Lampert C, Peters J. Learning dynamic tactile sensing with robust vision based training. IEEE Transactions on Robotics. 2011;27(3):545-557. doi:10.1109/TRO.2011.2121130
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Schrempf A, Cremer S, Heinze J. Social influence on age and reproduction reduced lifespan and fecundity in multi queen ant colonies. Journal of Evolutionary Biology. 2011;24(7):1455-1461. doi:10.1111/j.1420-9101.2011.02278.x
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Sixt MK. Interstitial locomotion of leukocytes. Immunology Letters. 2011;138(1):32-34. doi:10.1016/j.imlet.2011.02.013
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Heisenberg C-PJ. Invited Lectures10.1111/j.1742-4658.2011.08136.x__Symposia Area. FEBS Journal. 2011;278():24-24. doi:10.1111/j.1742-4658.2011.08136.x
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Cremer S, Schrempf A, Heinze J. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. 2011;6(3). doi:10.1371/journal.pone.0017323
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Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. 2011;102(3):527-539. doi:10.1111/j.1095-8312.2010.01601.x
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Barton NH. Estimating linkage disequilibria. Heredity. 2011;106(2):205-206. doi:10.1038/hdy.2010.67
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PMID: 20502479

Krens G, Heisenberg C-PJ. Cell sorting in development. In: Labouesse M, ed. Forces and Tension in Development. Vol 95. Elsevier; 2011:189-213. doi:10.1016/B978-0-12-385065-2.00006-2
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DOI: 10.1016/B978-0-12-385065-2.00006-2

Didier F, Henzinger TA, Mateescu M, Wolf V. Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. 2011;412(21):2128-2141. doi:10.1016/j.tcs.2010.10.022
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Vyleta N, Smith S. Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor. European Journal of Neuroscience. 2011;31(12):4593-4606. doi:10.1523/JNEUROSCI.6398-10.2011
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DOI: 10.1523/JNEUROSCI.6398-10.2011

Schlögl A, Vidaurre C, Sander T. BioSig: The free and open source software library for biomedical signal processing. Computational Intelligence and Neuroscience. 2011;2011. doi:10.1155/2011/935364
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Eichner A, Sixt MK. Setting the clock for recirculating lymphocytes. Science Signaling. 2011;4(198). doi:10.1126/scisignal.2002617
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Schraivogel D, Weinmann L, Beier D, et al. CAMT is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells. EMBO Journal. 2011;30(20):4309-4322. doi:10.1038/emboj.2011.301
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DOI: 10.1038/emboj.2011.301
PMID: 21857646

Guerraoui R, Henzinger TA, Singh V. Verification of STM on relaxed memory models. Formal Methods in System Design. 2011;39(3):297-331. doi:10.1007/s10703-011-0131-3
LibreCat: https://research-explorer.ista.ac.at/record/531
DOI: 10.1007/s10703-011-0131-3

Chatterjee K, Henzinger MH. An O(N2) Time Algorithm for Alternating Büchi Games. IST Austria; 2011. doi:10.15479/AT:IST-2011-0009
LibreCat: https://research-explorer.ista.ac.at/record/5379
DOI: 10.15479/AT:IST-2011-0009

Chatterjee K, Doyen L. Partial-Observation Stochastic Games: How to Win When Belief Fails. IST Austria; 2011. doi:10.15479/AT:IST-2011-0007
LibreCat: https://research-explorer.ista.ac.at/record/5381
DOI: 10.15479/AT:IST-2011-0007

Chatterjee K. Bounded Rationality in Concurrent Parity Games. IST Austria; 2011. doi:10.15479/AT:IST-2011-0008
LibreCat: https://research-explorer.ista.ac.at/record/5380
DOI: 10.15479/AT:IST-2011-0008

Chatterjee K. Robustness of Structurally Equivalent Concurrent Parity Games. IST Austria; 2011. doi:10.15479/AT:IST-2011-0006
LibreCat: https://research-explorer.ista.ac.at/record/5382
DOI: 10.15479/AT:IST-2011-0006

Chatterjee K. Bounded rationality in concurrent parity games. arXiv. 2011:1-51.
LibreCat: https://research-explorer.ista.ac.at/record/3338
arXiv: 1107.2146

Boker U, Chatterjee K, Henzinger TA, Kupferman O. Temporal specifications with accumulative values. In: IEEE; 2011. doi:10.1109/LICS.2011.33
LibreCat: https://research-explorer.ista.ac.at/record/3356
DOI: 10.1109/LICS.2011.33

Boker U, Chatterjee K, Henzinger TA, Kupferman O. Temporal Specifications with Accumulative Values. IST Austria; 2011. doi:10.15479/AT:IST-2011-0003
LibreCat: https://research-explorer.ista.ac.at/record/5385
DOI: 10.15479/AT:IST-2011-0003

Chen C, Freedman D, Lampert C. Enforcing Topological Constraints in Random Field Image Segmentation. IST Austria; 2011. doi:10.15479/AT:IST-2011-0002
LibreCat: https://research-explorer.ista.ac.at/record/5386
DOI: 10.15479/AT:IST-2011-0002

Wies T, Muñiz M, Kuncak V. On an Efficient Decision Procedure for Imperative Tree Data Structures. IST Austria; 2011. doi:10.15479/AT:IST-2011-0005
LibreCat: https://research-explorer.ista.ac.at/record/5383
DOI: 10.15479/AT:IST-2011-0005

Chatterjee K, Tracol M. Decidable Problems for Probabilistic Automata on Infinite Words. IST Austria; 2011. doi:10.15479/AT:IST-2011-0004
LibreCat: https://research-explorer.ista.ac.at/record/5384
DOI: 10.15479/AT:IST-2011-0004

Chen C, Freedman D, Lampert C. Enforcing topological constraints in random field image segmentation. In: CVPR: Computer Vision and Pattern Recognition. IEEE; 2011:2089-2096. doi:10.1109/CVPR.2011.5995503
LibreCat: https://research-explorer.ista.ac.at/record/3336
DOI: 10.1109/CVPR.2011.5995503

Wies T, Muñiz M, Kuncak V. An efficient decision procedure for imperative tree data structures. In: Vol 6803. Springer; 2011:476-491. doi:10.1007/978-3-642-22438-6_36
LibreCat: https://research-explorer.ista.ac.at/record/3323
DOI: 10.1007/978-3-642-22438-6_36

Cerny P, Chatterjee K, Henzinger TA, Radhakrishna A, Singh R. Quantitative synthesis for concurrent programs. In: Gopalakrishnan G, Qadeer S, eds. Vol 6806. Springer; 2011:243-259. doi:10.1007/978-3-642-22110-1_20
LibreCat: https://research-explorer.ista.ac.at/record/3366
DOI: 10.1007/978-3-642-22110-1_20

Chatterjee K, Doyen L. Energy and mean-payoff parity Markov Decision Processes. In: Vol 6907. Springer; 2011:206-218. doi:10.1007/978-3-642-22993-0_21
LibreCat: https://research-explorer.ista.ac.at/record/3345
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arXiv: 1104.2909

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