Chatterjee K, Doyen L, Henzinger TA. Probabilistic weighted automata. In: Vol 5710. Springer; 2009:244-258. doi:10.1007/978-3-642-04081-8_17
LibreCat: https://research-explorer.ista.ac.at/record/3871
DOI: 10.1007/978-3-642-04081-8_17

Chatterjee K, Henzinger TA, Horn F. Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). 2009;11(1). doi:10.1145/1614431.1614432
LibreCat: https://research-explorer.ista.ac.at/record/3870
DOI: 10.1145/1614431.1614432

Polechova J, Barton NH, Marion G. Species’ range: Adaptation in space and time. American Naturalist. 2009;174(5):6-4. doi:10.1086/605958
LibreCat: https://research-explorer.ista.ac.at/record/4136
DOI: 10.1086/605958
PMID:  19788353

Barton NH, De Cara M. The evolution of strong reproductive isolation. Evolution; International Journal of Organic Evolution. 2009;63(5):1171-1190. doi:10.1111/j.1558-5646.2009.00622.x
LibreCat: https://research-explorer.ista.ac.at/record/4242
DOI: 10.1111/j.1558-5646.2009.00622.x

Barton NH. Why sex and recombination? . In: Cold Spring Harbor Symposia on Quantitative Biology. Vol 74. Cold Spring Harbor Laboratory Press; 2009:187-195. doi:10.1101/sqb.2009.74.030
LibreCat: https://research-explorer.ista.ac.at/record/3675
DOI: 10.1101/sqb.2009.74.030

Barton NH, Coe J. On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. 2009;259(2):317-324. doi:10.1016/j.jtbi.2009.03.019
LibreCat: https://research-explorer.ista.ac.at/record/3775
DOI: 10.1016/j.jtbi.2009.03.019

Tripakis S, Lickly B, Henzinger TA, Lee E. On relational interfaces. In: EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software. ACM; 2009:67-76. doi:10.1145/1629335.1629346
LibreCat: https://research-explorer.ista.ac.at/record/3837
DOI: 10.1145/1629335.1629346

Edelsbrunner H, Harer J. The persistent Morse complex segmentation of a 3-manifold. In: Vol 5903. Springer; 2009:36-50. doi:10.1007/978-3-642-10470-1_4
LibreCat: https://research-explorer.ista.ac.at/record/3968
DOI: 10.1007/978-3-642-10470-1_4

Barton NH, De Vladar H. Statistical mechanics and the evolution of polygenic quantitative traits. Genetics. 2009;181(3):997-1011. doi:10.1534/genetics.108.099309
LibreCat: https://research-explorer.ista.ac.at/record/4231
DOI: 10.1534/genetics.108.099309

Chatterjee K, Doyen L, Henzinger TA. Alternating weighted automata. In: Vol 5699. Springer; 2009:3-13. doi:10.1007/978-3-642-03409-1_2
LibreCat: https://research-explorer.ista.ac.at/record/4542
DOI: 10.1007/978-3-642-03409-1_2

Chatterjee K, Doyen L, Henzinger TA. A survey of stochastic games with limsup and liminf objectives. In: Vol 5556. Springer; 2009:1-15. doi:10.1007/978-3-642-02930-1_1
LibreCat: https://research-explorer.ista.ac.at/record/4545
DOI: 10.1007/978-3-642-02930-1_1

Chatterjee K, Henzinger TA, Horn F. Stochastic games with finitary objectives. In: Vol 5734. Springer; 2009:34-54. doi:10.1007/978-3-642-03816-7_4
LibreCat: https://research-explorer.ista.ac.at/record/4543
DOI: 10.1007/978-3-642-03816-7_4

Bloem R, Chatterjee K, Henzinger TA, Jobstmann B. Better quality in synthesis through quantitative objectives. In: Vol 5643. Springer; 2009:140-156. doi:10.1007/978-3-642-02658-4_14
LibreCat: https://research-explorer.ista.ac.at/record/4569
DOI: 10.1007/978-3-642-02658-4_14
arXiv: 0904.2638

Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. Gist: A Solver for Probabilistic Games. IST Austria; 2009. doi:10.15479/AT:IST-2009-0003
LibreCat: https://research-explorer.ista.ac.at/record/5393
DOI: 10.15479/AT:IST-2009-0003

Chatterjee K, Henzinger TA, Horn F. Improved Lower Bounds for Request-Response and Finitary Streett Games. IST Austria; 2009. doi:10.15479/AT:IST-2009-0002
LibreCat: https://research-explorer.ista.ac.at/record/5394
DOI: 10.15479/AT:IST-2009-0002

Chatterjee K. Probabilistic Automata on Infinite Words: Decidability and Undecidability Results. IST Austria; 2009. doi:10.15479/AT:IST-2009-0004
LibreCat: https://research-explorer.ista.ac.at/record/5392
DOI: 10.15479/AT:IST-2009-0004

Chatterjee K, Doyen L, Henzinger TA. Qualitative Analysis of Partially-Observable Markov Decision Processes. IST Austria; 2009. doi:10.15479/AT:IST-2009-0001
LibreCat: https://research-explorer.ista.ac.at/record/5395
DOI: 10.15479/AT:IST-2009-0001

Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis endosperm. Science. 2009;324(5933):1451-1454. doi:10.1126/science.1172417
LibreCat: https://research-explorer.ista.ac.at/record/9453
DOI: 10.1126/science.1172417
PMID: 19520962

Zilberman D. The evolving functions of DNA methylation. Current Opinion in Plant Biology. 2008;11(5):554-559. doi:10.1016/j.pbi.2008.07.004
LibreCat: https://research-explorer.ista.ac.at/record/9537
DOI: 10.1016/j.pbi.2008.07.004
PMID: 18774331

Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 2008;456(7218):125-129. doi:10.1038/nature07324
LibreCat: https://research-explorer.ista.ac.at/record/9457
DOI: 10.1038/nature07324
PMID: 18815594

Barton NH. Identity and coalescence in structured populations: A commentary on “Inbreeding coefficients and coalescence times”10.1017/S0016672308009683__by Montgomery Slatkin. Genetics Research. 2008;89(5-6):475-477. doi:10.1017/S0016672308009683
LibreCat: https://research-explorer.ista.ac.at/record/517
DOI: 10.1017/S0016672308009683

Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences. 2007;104(16):6752-6757. doi:10.1073/pnas.0701861104
LibreCat: https://research-explorer.ista.ac.at/record/9487
DOI: 10.1073/pnas.0701861104
PMID: 17409185

Zilberman D. The Human Promoter Methylome. Vol 39. Nature Publishing Group; 2007:442-443. doi:10.1038/ng0407-442
LibreCat: https://research-explorer.ista.ac.at/record/9504
DOI: 10.1038/ng0407-442
PMID: 17392803

Zilberman D, Henikoff S. Genome-wide analysis of DNA methylation patterns. Development. 2007;134(22):3959-3965. doi:10.1242/dev.001131
LibreCat: https://research-explorer.ista.ac.at/record/9524
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PMID: 17928417

Feng X, Dickinson HG. Packaging the male germline in plants. Trends in Genetics. 2007;23(10):503-510. doi:10.1016/j.tig.2007.08.005
LibreCat: https://research-explorer.ista.ac.at/record/12201
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PMID: 17825943

Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. 2006;39(1):61-69. doi:10.1038/ng1929
LibreCat: https://research-explorer.ista.ac.at/record/9505
DOI: 10.1038/ng1929
PMID: 17128275

Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. 2005;15(2):154-159. doi:10.1016/j.cub.2005.01.008
LibreCat: https://research-explorer.ista.ac.at/record/9491
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PMID: 15668172 

Tran RK, Zilberman D, de Bustos C, et al. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 2005;6(11). doi:10.1186/gb-2005-6-11-r90
LibreCat: https://research-explorer.ista.ac.at/record/9514
DOI: 10.1186/gb-2005-6-11-r90
PMID: 16277745

Zilberman D, Henikoff S. Epigenetic inheritance in Arabidopsis: Selective silence. Current Opinion in Genetics and Development. 2005;15(5):557-562. doi:10.1016/j.gde.2005.07.002
LibreCat: https://research-explorer.ista.ac.at/record/9529
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Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. Role of Arabidopsis ARGONAUT in RNA-directed DNA methylation triggered by inverted repeats. Current Biology. 2004;14(13):1214-1220. doi:10.1016/j.cub.2004.06.055
LibreCat: https://research-explorer.ista.ac.at/record/9493
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PMID: 15242620 

Xie Z, Johansen LK, Gustafson AM, et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biology. 2004;2(5):0642-0652. doi:10.1371/journal.pbio.0020104
LibreCat: https://research-explorer.ista.ac.at/record/9517
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Zilberman D, Henikoff S. Silencing of transposons in plant genomes: kick them when they’re down. Genome Biology. 2004;5(12). doi:10.1186/gb-2004-5-12-249
LibreCat: https://research-explorer.ista.ac.at/record/9511
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PMID: 15575975

Chan SW-L, Zilberman D, Xie10.1126/science.1095989__Zhixin, Johansen10.1126/science.1095989__Lisa K., Carrington JC, Jacobsen SE. RNA silencing genes control de novo DNA methylation. Science. 2004;303(5662):1336. doi:10.1126/science.1095989
LibreCat: https://research-explorer.ista.ac.at/record/9454
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PMID: 14988555

Liao Z, Chen M, Gong Y, et al. A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides. DNA Sequence. 2004;15(2):153-158. doi:10.1080/10425170410001667348
LibreCat: https://research-explorer.ista.ac.at/record/12203
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PMID: 15352294

Cao X, Aufsatz W, Zilberman D, et al. Role of the DRM and CM methyltransferases in RNA-directed DNA methylation. Current Biology. 2003;13(24):2212-2217. doi:10.1016/j.cub.2003.11.052
LibreCat: https://research-explorer.ista.ac.at/record/9495
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PMID: 14680640

Zilberman D, Cao10.1126/science.1079695__Xiaofeng, Jacobsen SE. ARGONAUT control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 2003;299(5607):716-719. doi:10.1126/science.1079695
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Lindroth AM, Cao X, Jackson JP, et al. Requirement of CHROMOMETHYLAS for maintenance of CpXpG methylation. Science. 2001;292(5524):2077-2080. doi:10.1126/science.1059745
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