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Krenn S, Pietrzak KZ, Wadia A. A counterexample to the chain rule for conditional HILL entropy, and what deniable encryption has to do with it. In: Sahai A, ed. Vol 7785. Springer; 2013:23-39. doi:10.1007/978-3-642-36594-2_2

Tommasi T, Quadrianto N, Caputo B, Lampert C. Beyond dataset bias: Multi-task unaligned shared knowledge transfer. 2013;7724:1-15. doi:10.1007/978-3-642-37331-2_1

Chatterjee K, De Alfaro L, Faella M, Majumdar R, Raman V. Code aware resource management. Formal Methods in System Design. 2013;42(2):142-174. doi:10.1007/s10703-012-0170-4

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Chen C, Kerber M. An output sensitive algorithm for persistent homology. Computational Geometry: Theory and Applications. 2013;46(4):435-447. doi:10.1016/j.comgeo.2012.02.010

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Quadrianto N, Lampert C. Kernel based learning. In: Dubitzky W, Wolkenhauer O, Cho K, Yokota H, eds. Encyclopedia of Systems Biology. Vol 3. Springer; 2013:1069-1069. doi:10.1007/978-1-4419-9863-7_604

Chatterjee K, Henzinger MH, Joglekar M, Shah N. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. Formal Methods in System Design. 2013;42(3):301-327. doi:10.1007/s10703-012-0180-2

Pickup M, Field D, Rowell D, Young A. Source population characteristics affect heterosis following genetic rescue of fragmented plant populations. Proceedings of the Royal Society of London Series B Biological Sciences. 2013;280(1750). doi:10.1098/rspb.2012.2058

Dickerson D, Bilkey D. Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. Frontiers in Behavioral Neuroscience. 2013;7(DEC). doi:10.3389/fnbeh.2013.00217

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Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. BMC Evolutionary Biology. 2013;13(1). doi:10.1186/1471-2148-13-222

Cozzuol M, Clozato C, Holanda E, et al. A new species of tapir from the Amazon. Journal of Mammalogy. 2013;94(6):1331-1345. doi:10.1644/12-MAMM-A-169.1

Greimel K, Perz V, Koren K, et al. Banning toxic heavy-metal catalysts from paints: Enzymatic cross-linking of alkyd resins. Green Chemistry. 2013;15(2):381-388. doi:10.1039/c2gc36666e

Blazy O, Fuchsbauer G, Pointcheval D, Vergnaud D. Short blind signatures. Journal of Computer Security. 2013;21(5):627-661. doi:10.3233/JCS-130477

Tarazona Santos E, Machado M, Magalhães W, et al. Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NC, and NC: Functional implications. Molecular Biology and Evolution. 2013;30(9):2157-2167. doi:10.1093/molbev/mst119

Di Rubbo S, Irani N, Kim S, et al. The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIV in arabidopsis. Plant Cell. 2013;25(8):2986-2997. doi:10.1105/tpc.113.114058

Kim S, Xu Z, Song K, et al. Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis. Plant Cell. 2013;25(8):2970-2985. doi:10.1105/tpc.113.114264

Pbndík A, Simonovik B, Petersson S, et al. Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid. Plant Cell. 2013;25(10):3858-3870. doi:10.1105/tpc.113.114421

Bargmann B, Vanneste S, Krouk G, et al. A map of cell typespecific auxin responses. Molecular Systems Biology. 2013;9(1). doi:10.1038/msb.2013.40

Fuertbauer E, Zaujec J, Uhrin P, et al. Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells. Immunology Letters. 2013;154(1-2):31-41. doi:10.1016/j.imlet.2013.07.007

Chatterjee K, Doyen L, Randour M, Raskin J. Looking at mean-payoff and total-payoff through windows. 2013;8172:118-132. doi:10.1007/978-3-319-02444-8_10

Robert H, Grones P, Stepanova A, et al. Local auxin sources orient the apical basal axis in arabidopsis embryos. Current Biology. 2013;23(24):2506-2512. doi:10.1016/j.cub.2013.09.039

Wabnik KT, Robert H, Smith R, Friml J. Modeling framework for the establishment of the apical-basal embryonic axis in plants. Current Biology. 2013;23(24):2513-2518. doi:10.1016/j.cub.2013.10.038

Reiter J, Bozic I, Chatterjee K, Nowak M. TTP: Tool for Tumor Progression. IST Austria; 2013. doi:10.15479/AT:IST-2013-104-v1-1

Chatterjee K, Chmelik M, Tracol M. What is decidable about partially observable Markov decision processes with omega-regular objectives. 2013;23:165-180. doi:10.4230/LIPIcs.CSL.2013.165

Chatterjee K, Ibsen-Jensen R. Qualitative Analysis of Concurrent Mean-Payoff Games. IST Austria; 2013. doi:10.15479/AT:IST-2013-126-v1-1

Henzinger TA, Sezgin A. How Free Is Your Linearizable Concurrent Data Structure? IST Austria; 2013. doi:10.15479/AT:IST-2013-123-v1-1

Chatterjee K, Chmelik M, Tracol M. What Is Decidable about Partially Observable Markov Decision Processes with <9-Regular Objectives. IST Austria; 2013. doi:10.15479/AT:IST-2013-109-v1-1

Chatterjee K, Ibsen-Jensen R. The Complexity of Ergodic Games. IST Austria; 2013. doi:10.15479/AT:IST-2013-127-v1-1

Porsche J. Initiatives and Projects Related to RD. IST Austria; 2013.

Chatterjee K, Doyen L, Gimbert H, Oualhadj Y. Perfect-Information Stochastic Mean-Payoff Parity Games. IST Austria; 2013. doi:10.15479/AT:IST-2013-128-v1-1

Chatterjee K, Ibsen-Jensen R, Majumdar R. Edit Distance for Timed Automata. IST Austria; 2013. doi:10.15479/AT:IST-2013-144-v1-1

Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. Distributed synthesis for LTL fragments. In: 13th International Conference on Formal Methods in Computer-Aided Design. IEEE; 2013:18-25. doi:10.1109/FMCAD.2013.6679386

Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. Distributed Synthesis for LTL Fragments. IST Austria; 2013. doi:10.15479/AT:IST-2013-130-v1-1

Chatterjee K, Doyen L, Nain S, Vardi M. The Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies. IST Austria; 2013. doi:10.15479/AT:IST-2013-141-v1-1

Porsche J. Technical Requirements and Features. IST Austria; 2013.

Ahmed U, Chatterjee K, Gulwani S. Automatic Generation of Alternative Starting Positions for Traditional Board Games. IST Austria; 2013. doi:10.15479/AT:IST-2013-146-v1-1

Henzinger TA, Otop J. From model checking to model measuring. 2013;8052:273-287. doi:10.1007/978-3-642-40184-8_20

Henzinger TA, Payer H, Sezgin A. Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues . IST Austria; 2013. doi:10.15479/AT:IST-2013-124-v1-1

Chatterjee K, Velner Y. Hyperplane separation technique for multidimensional mean-payoff games. 2013;8052:500-515. doi:10.1007/978-3-642-40184-8_35

O’Brien J, Benková E. Cytokinin cross talking during biotic and abiotic stress responses. Frontiers in Plant Science. 2013;4. doi:10.3389/fpls.2013.00451

Cuesta C, Wabnik KT, Benková E. Systems approaches to study root architecture dynamics. Frontiers in Plant Science. 2013;4. doi:10.3389/fpls.2013.00537

Zagorsky B, Reiter J, Chatterjee K, Nowak M. Forgiver triumphs in alternating prisoner’s dilemma . 2013. doi:10.1371/journal.pone.0080814.s001

Aeschbacher S, Futschik A, Beaumont M. Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. . Molecular Ecology. 2013;22(4):987-1002. doi:10.1111/mec.12165

Zemach A, Kim MY, Hsieh P-H, et al. The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access -containing heterochromatin. Cell. 2013;153(1):193-205. doi:10.1016/j.cell.2013.02.033

Rodrigues JA, Ruan R, Nishimura T, et al. Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. Proceedings of the National Academy of Sciences. 2013;110(19):7934-7939. doi:10.1073/pnas.1306164110

Tragust S, Ugelvig LV, Chapuisat M, Heinze J, Cremer S. Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies. BMC Evolutionary Biology. 2013;13(1). doi:10.1186/1471-2148-13-225

Simmons K, Prentice J, Tkadik G, et al. Transformation of stimulus correlations by the retina. PLoS Computational Biology. 2013;9(12). doi:10.1371/journal.pcbi.1003344

Hearn J, Stone G, Barton NH, Lohse K, Bunnefeld L. Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies. 2013. doi:10.5061/dryad.r3r60

Feng X, Zilberman D, Dickinson H. A conversation across generations: Soma-germ cell crosstalk in plants. Developmental Cell. 2013;24(3):215-225. doi:10.1016/j.devcel.2013.01.014

Stephens G, Mora T, Tkadik G, Bialek W. Statistical thermodynamics of natural images. Physical Review Letters. 2013;110(1). doi:10.1103/PhysRevLett.110.018701

Weber M, Sixt MK. Live Cell Imaging of Chemotactic Dendritic Cell Migration in Explanted Mouse Ear Preparations. In: Cardona A, Ubogu E, eds. Chemokines. Vol 1013. MIMB. Totowa, NJ: Humana Press; 2013:215-226. doi:10.1007/978-1-62703-426-5_14

Dragoi C, Gupta A, Henzinger TA. Automatic Linearizability Proofs of Concurrent Objects with Cooperating Updates. In: Computer Aided Verification. Vol 8044. CAV. Berlin, Heidelberg: Springer Berlin Heidelberg; 2013:174-190. doi:10.1007/978-3-642-39799-8_11

Chatterjee K, Chaubal S, Rubin S. How to travel between languages. In: 7th International Conference on Language and Automata Theory and Applications. Vol 7810. LNCS. Berlin, Heidelberg: Springer Nature; 2013:214-225. doi:10.1007/978-3-642-37064-9_20

Edelsbrunner H. Persistent homology in image processing. In: Graph-Based Representations in Pattern Recognition. Vol 7877. LNCS. Berlin, Heidelberg: Springer Nature; 2013:182-183. doi:10.1007/978-3-642-38221-5_19

Zufferey D. Analysis of dynamic message passing programs. 2013. doi:10.15479/at:ista:1405

Bansal K, Koskinen E, Wies T, Zufferey D. Structural Counter Abstraction. Piterman N, Smolka S, eds. 2013;7795:62-77. doi:10.1007/978-3-642-36742-7_5

Campinho P. Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading. 2013.

Zagorsky B, Reiter J, Chatterjee K, Nowak M. Forgiver triumphs in alternating prisoner’s dilemma . PLoS One. 2013;8(12). doi:10.1371/journal.pone.0080814

Reiter J, Boei I, Allen B, Chatterjee K, Nowak M. The effect of one additional driver mutation on tumor progression. Evolutionary Applications. 2013;6(1):34-45. doi:10.1111/eva.12020

Boei I, Reiter J, Allen B, et al. Evolutionary dynamics of cancer in response to targeted combination therapy. eLife. 2013;2. doi:10.7554/eLife.00747

Reiter J, Boei I, Chatterjee K, Nowak M. TTP: Tool for tumor progression. In: Proceedings of 25th Int. Conf. on Computer Aided Verification. Vol 8044. Lecture Notes in Computer Science. Springer; 2013:101-106. doi:10.1007/978-3-642-39799-8_6

Cerny P, Henzinger TA, Radhakrishna A, Ryzhyk L, Tarrach T. Efficient synthesis for concurrency by semantics-preserving transformations. In: Vol 8044. Springer; 2013:951-967. doi:10.1007/978-3-642-39799-8_68

Tragust S, Mitteregger B, Barone V, Konrad M, Ugelvig LV, Cremer S. Ants disinfect fungus-exposed brood by oral uptake and spread of their poison. Current Biology. 2013;23(1):76-82. doi:10.1016/j.cub.2012.11.034

Brázdil T, Chatterjee K, Forejt V, Kudera A. Trading performance for stability in Markov decision processes. In: 28th Annual ACM/IEEE Symposium. IEEE; 2013:331-340. doi:10.1109/LICS.2013.39

Chatterjee K, Kößler A, Schmid U. Automated analysis of real-time scheduling using graph games. In: Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control. ACM; 2013:163-172. doi:10.1145/2461328.2461356

Takhanov R, Kolmogorov V. Inference algorithms for pattern-based CRFs on sequence data. In: ICML’13 Proceedings of the 30th International Conference on International. Vol 28. ML Research Press; 2013:145-153.

Remy E, Baster P, Friml J, Duque P. ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip. Plant Signaling &; Behavior. 2013;8(10). doi:10.4161/psb.25688

Refardt D, Bergmiller T, Kümmerli R. Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. 2013;280(1759). doi:10.1098/rspb.2012.3035

Refardt D, Bergmiller T, Kümmerli R. Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. 2013. doi:10.5061/dryad.b1q2n

Dziembowski S, Faust S, Kolmogorov V, Pietrzak KZ. Proofs of Space. IST Austria; 2013.

zur Nedden S, Doney AS, Frenguelli BG. The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In: Masino S, Boison D, eds. Adenosine. 1st ed. New York: Springer; 2012:109-129. doi:10.1007/978-1-4614-3903-5_6

Beyer D, Henzinger TA, Keremoglu M, Wendler P. Conditional model checking: A technique to pass information between verifiers. In: Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. ACM; 2012. doi:10.1145/2393596.2393664

Faust S, Pietrzak KZ, Schipper J. Practical leakage-resilient symmetric cryptography. In: 10.1007/978-3-642-33027-8_13__Conference Proceedings CHES 2012. Vol 7428. Springer; 2012:213-232. doi:10.1007/978-3-642-33027-8_13

Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. Lapin: An efficient authentication protocol based on ring-LPN. In: 10.1007/978-3-642-34047-5_20__Conference Proceedings FSE 2012. Vol 7549. Springer; 2012:346-365. doi:10.1007/978-3-642-34047-5_20

Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology open. 2012;1(12):1200-1203. doi:10.1242/bio.20122287

Henzinger TA, Mateescu M. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 2012;10(2):310-322. doi:10.1109/TCBB.2012.91

Seiringer R. Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. 2012;2(3):321-328. doi:10.4171/JST/31

Ebersberger I, De Matos Simoes R, Kupczok A, et al. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 2012;29(5):1319-1334. doi:10.1093/molbev/msr285

Chatterjee K, Joglekar M, Shah N. Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives. In: Vol 18. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2012:461-473. doi:10.4230/LIPIcs.FSTTCS.2012.461

Chatterjee K, Randour M, Raskin J-F. Strategy synthesis for multi-dimensional quantitative objectives. In: Koutny M, Ulidowski I, eds. CONCUR 2012 - Concurrency Theory. Vol 7454. Berlin, Heidelberg: Springer; 2012:115-131. doi:10.1007/978-3-642-32940-1_10

Lampert C. Dynamic pruning of factor graphs for maximum marginal prediction. In: Vol 1. Neural Information Processing Systems; 2012:82-90.

Chatterjee K, Zufferey D, Nowak M. Evolutionary game dynamics in populations with different learners. Journal of Theoretical Biology. 2012;301:161-173. doi:10.1016/j.jtbi.2012.02.021

Edelsbrunner H, Strelkova N. On the configuration space of Steiner minimal trees. Russian Mathematical Surveys. 2012;67(6):1167-1168. doi:10.1070/RM2012v067n06ABEH004820

Boker U, Henzinger TA. Approximate determinization of quantitative automata. In: Leibniz International Proceedings in Informatics. Vol 18. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2012:362-373. doi:10.4230/LIPIcs.FSTTCS.2012.362

Cerny P, Gopi S, Henzinger TA, Radhakrishna A, Totla N. Synthesis from incompatible specifications. In: Proceedings of the Tenth ACM International Conference on Embedded Software. ACM; 2012:53-62. doi:10.1145/2380356.2380371

Henzinger TA. Quantitative reactive models. In: Conference Proceedings MODELS 2012. Vol 7590. Springer; 2012:1-2. doi:10.1007/978-3-642-33666-9_1

Edelsbrunner H, Symonova O. The adaptive topology of a digital image. In: IEEE; 2012:41-48. doi:10.1109/ISVD.2012.11

Cerny P, Chmelik M, Henzinger TA, Radhakrishna A. Interface Simulation Distances. In: Electronic Proceedings in Theoretical Computer Science. Vol 96. EPTCS; 2012:29-42. doi:10.4204/EPTCS.96.3

de Vladar H. The game of active search for extra terrestrial intelligence Breaking the Great Silence . International Journal of Astrobiology. 2012;12(1):53-62. doi:10.1017/S1473550412000407

Huber A, Kolmogorov V. Towards minimizing k-submodular functions. In: Vol 7422. Springer; 2012:451-462. doi:10.1007/978-3-642-32147-4_40

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Almeida J, Barbosa M, Bangerter E, Barthe G, Krenn S, Béguelin S. Full proof cryptography: Verifiable compilation of efficient zero-knowledge protocols. In: Proceedings of the 2012 ACM Conference on Computer and Communications Security. ACM; 2012:488-500. doi:10.1145/2382196.2382249

Chatterjee K, Henzinger TA, Prabhu V. Finite automata with time delay blocks. In: Roceedings of the Tenth ACM International Conference on Embedded Software. ACM; 2012:43-52. doi:10.1145/2380356.2380370

Ugelvig LV, Cremer S. Effects of social immunity and unicoloniality on host parasite interactions in invasive insect societies. Functional Ecology. 2012;26(6):1300-1312. doi:10.1111/1365-2435.12013

Torresani L, Kolmogorov V, Rother C. A dual decomposition approach to feature correspondence. IEEE Transactions on Pattern Analysis and Machine Intelligence. 2012;35(2):259-271. doi:10.1109/TPAMI.2012.105

Henzinger TA, Nickovic D. Independent implementability of viewpoints. In: 10.1007/978-3-642-34059-8_20__Conference Proceedings Monterey Workshop 2012. Vol 7539. Springer; 2012:380-395. doi:10.1007/978-3-642-34059-8_20

Hadizadeh Yazdi N, Guet CC, Johnson R, Marko J. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. 2012;86(6):1318-1333. doi:10.1111/mmi.12071