R. Alur and P. Cerny, “Expressiveness of streaming string transducers,” presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Chennai, India, 2010, vol. 8, pp. 1–12.
LibreCat: https://research-explorer.ista.ac.at/record/488
DOI: 10.4230/LIPIcs.FSTTCS.2010.1

J. Cristau, C. David, and F. Horn, “How do we remember the past in randomised strategies? ,” in Proceedings of GandALF 2010, Minori, Amalfi Coast, Italy, 2010, vol. 25, pp. 30–39.
LibreCat: https://research-explorer.ista.ac.at/record/489
DOI: 10.4204/EPTCS.25.7

J. Hoenicke, K. Leino, A. Podelski, M. Schäf, and T. Wies, “Doomed program points,” Formal Methods in System Design, vol. 37, no. 2–3. Springer, pp. 171–199, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/533
DOI: 10.1007/s10703-010-0102-0

P. Cerny, T. A. Henzinger, and A. Radhakrishna, “Simulation distances,” presented at the CONCUR: Concurrency Theory, Paris, France, 2010, vol. 6269, pp. 235–268.
LibreCat: https://research-explorer.ista.ac.at/record/4393
DOI: 10.1007/978-3-642-15375-4_18

K. Chatterjee, P. Cerny, T. A. Henzinger, A. Radhakrishna, and R. Singh, Quantitative synthesis for concurrent programs. IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5388
DOI: 10.15479/AT:IST-2010-0004

P. Cerny, T. A. Henzinger, and A. Radhakrishna, Simulation distances. IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5389
DOI: 10.15479/AT:IST-2010-0003

P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, and R. Alur, “Model checking of linearizability of concurrent list implementations,” presented at the CAV: Computer Aided Verification, Edinburgh, UK, 2010, vol. 6174, pp. 465–479.
LibreCat: https://research-explorer.ista.ac.at/record/4390
DOI: 10.1007/978-3-642-14295-6_41

K. Chatterjee, T. A. Henzinger, B. Jobstmann, and A. Radhakrishna, “GIST: A solver for probabilistic games,” presented at the CAV: Computer Aided Verification, Edinburgh, UK, 2010, vol. 6174, pp. 665–669.
LibreCat: https://research-explorer.ista.ac.at/record/4388
DOI: 10.1007/978-3-642-14295-6_57
arXiv: 1004.2367

P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, and R. Alur, Model checking of linearizability of concurrent list implementations. IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5391
DOI: 10.15479/AT:IST-2010-0001

K. Chatterjee and N. Fijalkow, Topological, automata-theoretic and logical characterization of finitary languages. IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5390
DOI: 10.15479/AT:IST-2010-0002

K. Chatterjee and T. A. Henzinger, “Probabilistic Automata on infinite words: decidability and undecidability results,” presented at the ATVA: Automated Technology for Verification and Analysis, Singapore, Singapore, 2010, vol. 6252, pp. 1–16.
LibreCat: https://research-explorer.ista.ac.at/record/3857
DOI: 10.1007/978-3-642-15643-4_1

K. Chatterjee, L. Doyen, and T. A. Henzinger, “Qualitative analysis of partially-observable Markov Decision Processes,” presented at the MFCS: Mathematical Foundations of Computer Science, Brno, Czech Republic, 2010, vol. 6281, pp. 258–269.
LibreCat: https://research-explorer.ista.ac.at/record/3855
DOI: 10.1007/978-3-642-15155-2_24

A. Zemach et al., “Local DNA hypomethylation activates genes in rice endosperm,” Proceedings of the National Academy of Sciences, vol. 107, no. 43. National Academy of Sciences, pp. 18729–18734, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/9485
DOI: 10.1073/pnas.1009695107
PMID: 20937895

A. Zemach and D. Zilberman, “Evolution of eukaryotic DNA methylation and the pursuit of safer sex,” Current Biology, vol. 20, no. 17. Elsevier, pp. 0–5, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/9489
DOI: 10.1016/j.cub.2010.07.007
PMID: 20833323

A. Zemach, I. E. McDaniel, P. Silva, and D. Zilberman, “Genome-wide evolutionary analysis of eukaryotic DNA methylation,” Science, vol. 328, no. 5980. American Association for the Advancement of Science, pp. 916–919, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/9452
DOI: 10.1126/science.1186366
PMID: 20395474 

U. Rosas, N. H. Barton, L. Copsey, P. Barbier De Reuille, and E. Coen, “Cryptic variation between species and the basis of hybrid performance,” PLoS Biology, vol. 8, no. 7. Public Library of Science, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/3779
DOI: 10.1371/journal.pbio.1000429

U. Rosas, N. H. Barton, L. Copsey, P. Barbier De Reuille, and E. Coen, “Heterosis and the drift load.” Public Library of Science, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/9764
DOI: 10.1371/journal.pbio.1000429.s003

X. Feng and H. G. Dickinson, “Tapetal cell fate, lineage and proliferation in the Arabidopsis anther,” Development, vol. 137, no. 14. The Company of Biologists, pp. 2409–2416, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/12199
DOI: 10.1242/dev.049320
PMID: 20570940

X. Feng and H. G. Dickinson, “Cell–cell interactions during patterning of the Arabidopsis anther,” Biochemical Society Transactions, vol. 38, no. 2. Portland Press Ltd., pp. 571–576, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/12200
DOI: 10.1042/bst0380571
PMID: 20298223

K. Chatterjee and R. Majumdar, “Discounting in games across time scales,” presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy, 2010, vol. 25, pp. 22–29.
LibreCat: https://research-explorer.ista.ac.at/record/3852
DOI: 10.4204/EPTCS.25.6
arXiv: 1006.1403

H. Pflicke, “  Dendritic cell migration across basement membranes in the skin,” Institute of Science and Technology Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/3962

T. Wies, D. Zufferey, and T. A. Henzinger, “Forward analysis of depth-bounded processes,” presented at the FoSSaCS: Foundations of Software Science and Computation Structures, Paphos, Cyprus, 2010, vol. 6014, pp. 94–108.
LibreCat: https://research-explorer.ista.ac.at/record/4361
DOI: 10.1007/978-3-642-12032-9_8

F. Palero, P. Abello, E. Macpherson, C. Matthee, and M. Pascual, “Genetic diversity levels in fishery-exploited spiny lobsters of the Genus Palinurus (Decapoda: Achelata),” Journal of Crustacean Biology, vol. 30, no. 4. Oxford University Press, pp. 658–663, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/3785
DOI: 10.1651/09-3192.1

A. Schlögl, C. Vidaurre, and K.-R. Müller, “Adaptive Methods in BCI Research - An Introductory Tutorial,” in Brain-Computer Interfaces, 1st ed., B. Graimann, G. Pfurtscheller, and B. Allison, Eds. Berlin, Heidelberg: Springer, 2010, pp. 331–355.
LibreCat: https://research-explorer.ista.ac.at/record/14983
DOI: 10.1007/978-3-642-02091-9_18

A. Davison, N. H. Barton, and B. Clarke, “The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails,” Journal of Evolutionary Biology, vol. 22, no. 8. Wiley, pp. 1624–1635, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/3780
DOI: 10.1111/j.1420-9101.2009.01770.x

F. Didier, T. A. Henzinger, M. Mateescu, and V. Wolf, “Fast adaptive uniformization of the chemical master equation,” presented at the HIBI: High-Performance Computational Systems Biology, Trento, Italy, 2009, vol. 4, no. 6, pp. 118–127.
LibreCat: https://research-explorer.ista.ac.at/record/3843
DOI: 10.1109/HiBi.2009.23

T. A. Henzinger, B. Jobstmann, and V. Wolf, “Formalisms for specifying Markovian population models,” presented at the RP: Reachability Problems, Palaiseau, France, 2009, vol. 5797, pp. 3–23.
LibreCat: https://research-explorer.ista.ac.at/record/3841
DOI: 10.1007/978-3-642-04420-5_2

T. A. Henzinger, C. Kirsch, E. Marques, and A. Sokolova, “Distributed, modular HTL,” presented at the RTSS: Real-Time Systems Symposium, Washington, DC, United States, 2009, pp. 171–180.
LibreCat: https://research-explorer.ista.ac.at/record/3844
DOI: 10.1109/RTSS.2009.9

K. Chatterjee, L. Doyen, and T. A. Henzinger, “Probabilistic weighted automata,” presented at the CONCUR: Concurrency Theory, Bologna, Italy, 2009, vol. 5710, pp. 244–258.
LibreCat: https://research-explorer.ista.ac.at/record/3871
DOI: 10.1007/978-3-642-04081-8_17

K. Chatterjee, T. A. Henzinger, and F. Horn, “Finitary winning in omega-regular games,” ACM Transactions on Computational Logic (TOCL), vol. 11, no. 1. ACM, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/3870
DOI: 10.1145/1614431.1614432

J. Polechova, N. H. Barton, and G. Marion, “Species’ range: Adaptation in space and time,” American Naturalist, vol. 174, no. 5. University of Chicago Press, pp. 6–4, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/4136
DOI: 10.1086/605958
PMID:  19788353

N. H. Barton and M. De Cara, “The evolution of strong reproductive isolation,” Evolution; International Journal of Organic Evolution, vol. 63, no. 5. Wiley, pp. 1171–1190, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/4242
DOI: 10.1111/j.1558-5646.2009.00622.x

N. H. Barton, “Why sex and recombination? ,” in Cold Spring Harbor Symposia on Quantitative Biology, vol. 74, Cold Spring Harbor Laboratory Press, 2009, pp. 187–195.
LibreCat: https://research-explorer.ista.ac.at/record/3675
DOI: 10.1101/sqb.2009.74.030

N. H. Barton and J. Coe, “On the application of statistical physics to evolutionary biology,” Journal of Theoretical Biology, vol. 259, no. 2. Elsevier, pp. 317–324, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/3775
DOI: 10.1016/j.jtbi.2009.03.019

S. Tripakis, B. Lickly, T. A. Henzinger, and E. Lee, “On relational interfaces,” in EMSOFT ’09 Proceedings of the seventh ACM international conference on Embedded software, Grenoble, France, 2009, pp. 67–76.
LibreCat: https://research-explorer.ista.ac.at/record/3837
DOI: 10.1145/1629335.1629346

H. Edelsbrunner and J. Harer, “The persistent Morse complex segmentation of a 3-manifold,” presented at the 3DPH: Modelling the Physiological Human, Zermatt, Switzerland, 2009, vol. 5903, pp. 36–50.
LibreCat: https://research-explorer.ista.ac.at/record/3968
DOI: 10.1007/978-3-642-10470-1_4

N. H. Barton and H. De Vladar, “Statistical mechanics and the evolution of polygenic quantitative traits,” Genetics, vol. 181, no. 3. Genetics Society of America, pp. 997–1011, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/4231
DOI: 10.1534/genetics.108.099309

K. Chatterjee, L. Doyen, and T. A. Henzinger, “Alternating weighted automata,” presented at the FCT: Fundamentals of Computation Theory, Wroclaw, Poland, 2009, vol. 5699, pp. 3–13.
LibreCat: https://research-explorer.ista.ac.at/record/4542
DOI: 10.1007/978-3-642-03409-1_2

K. Chatterjee, L. Doyen, and T. A. Henzinger, “A survey of stochastic games with limsup and liminf objectives,” presented at the ICALP: Automata, Languages and Programming, Rhodos, Greece, 2009, vol. 5556, pp. 1–15.
LibreCat: https://research-explorer.ista.ac.at/record/4545
DOI: 10.1007/978-3-642-02930-1_1

K. Chatterjee, T. A. Henzinger, and F. Horn, “Stochastic games with finitary objectives,” presented at the MFCS: Mathematical Foundations of Computer Science, High Tatras, Slovakia, 2009, vol. 5734, pp. 34–54.
LibreCat: https://research-explorer.ista.ac.at/record/4543
DOI: 10.1007/978-3-642-03816-7_4

R. Bloem, K. Chatterjee, T. A. Henzinger, and B. Jobstmann, “Better quality in synthesis through quantitative objectives,” presented at the CAV: Computer Aided Verification, Grenoble, France, 2009, vol. 5643, pp. 140–156.
LibreCat: https://research-explorer.ista.ac.at/record/4569
DOI: 10.1007/978-3-642-02658-4_14
arXiv: 0904.2638

K. Chatterjee, T. A. Henzinger, B. Jobstmann, and A. Radhakrishna, Gist: A solver for probabilistic games. IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5393
DOI: 10.15479/AT:IST-2009-0003

K. Chatterjee, T. A. Henzinger, and F. Horn, Improved lower bounds for request-response and finitary Streett games. IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5394
DOI: 10.15479/AT:IST-2009-0002

K. Chatterjee, Probabilistic automata on infinite words: Decidability and undecidability results. IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5392
DOI: 10.15479/AT:IST-2009-0004

K. Chatterjee, L. Doyen, and T. A. Henzinger, Qualitative analysis of partially-observable Markov decision processes. IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5395
DOI: 10.15479/AT:IST-2009-0001

T.-F. Hsieh et al., “Genome-wide demethylation of Arabidopsis endosperm,” Science, vol. 324, no. 5933. American Association for the Advancement of Science, pp. 1451–1454, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/9453
DOI: 10.1126/science.1172417
PMID: 19520962

D. Zilberman, “The evolving functions of DNA methylation,” Current Opinion in Plant Biology, vol. 11, no. 5. Elsevier , pp. 554–559, 2008.
LibreCat: https://research-explorer.ista.ac.at/record/9537
DOI: 10.1016/j.pbi.2008.07.004
PMID: 18774331

D. Zilberman, D. Coleman-Derr, T. Ballinger, and S. Henikoff, “Histone A.Z and DNA methylation are mutually antagonistic chromatin marks,” Nature, vol. 456, no. 7218. Springer Nature, pp. 125–129, 2008.
LibreCat: https://research-explorer.ista.ac.at/record/9457
DOI: 10.1038/nature07324
PMID: 18815594

N. H. Barton, “Identity and coalescence in structured populations: A commentary on ‘Inbreeding coefficients and coalescence times’ by Montgomery Slatkin,” Genetics Research, vol. 89, no. 5–6. Cambridge University Press, pp. 475–477, 2008.
LibreCat: https://research-explorer.ista.ac.at/record/517
DOI: 10.1017/S0016672308009683

J. Penterman, D. Zilberman, J. H. Huh, T. Ballinger, S. Henikoff, and R. L. Fischer, “DNA demethylation in the Arabidopsis genome,” Proceedings of the National Academy of Sciences, vol. 104, no. 16. National Academy of Sciences, pp. 6752–6757, 2007.
LibreCat: https://research-explorer.ista.ac.at/record/9487
DOI: 10.1073/pnas.0701861104
PMID: 17409185

D. Zilberman, The human promoter methylome, vol. 39, no. 4. Nature Publishing Group, 2007, pp. 442–443.
LibreCat: https://research-explorer.ista.ac.at/record/9504
DOI: 10.1038/ng0407-442
PMID: 17392803

D. Zilberman and S. Henikoff, “Genome-wide analysis of DNA methylation patterns,” Development, vol. 134, no. 22. The Company of Biologists, pp. 3959–3965, 2007.
LibreCat: https://research-explorer.ista.ac.at/record/9524
DOI: 10.1242/dev.001131
PMID: 17928417

X. Feng and H. G. Dickinson, “Packaging the male germline in plants,” Trends in Genetics, vol. 23, no. 10. Elsevier BV, pp. 503–510, 2007.
LibreCat: https://research-explorer.ista.ac.at/record/12201
DOI: 10.1016/j.tig.2007.08.005
PMID: 17825943

D. Zilberman, M. Gehring, R. K. Tran, T. Ballinger, and S. Henikoff, “Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription,” Nature Genetics, vol. 39, no. 1. Nature Publishing Group, pp. 61–69, 2006.
LibreCat: https://research-explorer.ista.ac.at/record/9505
DOI: 10.1038/ng1929
PMID: 17128275

R. K. Tran, J. G. Henikoff, D. Zilberman, R. F. Ditt, S. E. Jacobsen, and S. Henikoff, “DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes,” Current Biology, vol. 15, no. 2. Elsevier, pp. 154–159, 2005.
LibreCat: https://research-explorer.ista.ac.at/record/9491
DOI: 10.1016/j.cub.2005.01.008
PMID: 15668172 

R. K. Tran et al., “Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis,” Genome Biology, vol. 6, no. 11. Springer Nature, 2005.
LibreCat: https://research-explorer.ista.ac.at/record/9514
DOI: 10.1186/gb-2005-6-11-r90
PMID: 16277745

D. Zilberman and S. Henikoff, “Epigenetic inheritance in Arabidopsis: Selective silence,” Current Opinion in Genetics and Development, vol. 15, no. 5. Elsevier, pp. 557–562, 2005.
LibreCat: https://research-explorer.ista.ac.at/record/9529
DOI: 10.1016/j.gde.2005.07.002
PMID: 16085410

D. Zilberman, X. Cao, L. K. Johansen, Z. Xie, J. C. Carrington, and S. E. Jacobsen, “Role of Arabidopsis ARGONAUT in RNA-directed DNA methylation triggered by inverted repeats,” Current Biology, vol. 14, no. 13. Elsevier, pp. 1214–1220, 2004.
LibreCat: https://research-explorer.ista.ac.at/record/9493
DOI: 10.1016/j.cub.2004.06.055
PMID: 15242620 

Z. Xie et al., “Genetic and functional diversification of small RNA pathways in plants,” PLoS Biology, vol. 2, no. 5. Public Library of Science, pp. 0642–0652, 2004.
LibreCat: https://research-explorer.ista.ac.at/record/9517
DOI: 10.1371/journal.pbio.0020104
PMID: 15024409

D. Zilberman and S. Henikoff, “Silencing of transposons in plant genomes: kick them when they’re down,” Genome Biology, vol. 5, no. 12. Springer Nature, 2004.
LibreCat: https://research-explorer.ista.ac.at/record/9511
DOI: 10.1186/gb-2004-5-12-249
PMID: 15575975

S. W.-L. Chan, D. Zilberman,  Zhixin Xie,  Lisa K. Johansen, J. C. Carrington, and S. E. Jacobsen, “RNA silencing genes control de novo DNA methylation,” Science, vol. 303, no. 5662. American Association for the Advancement of Science, p. 1336, 2004.
LibreCat: https://research-explorer.ista.ac.at/record/9454
DOI: 10.1126/science.1095989
PMID: 14988555

Z. Liao et al., “A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides,” DNA Sequence, vol. 15, no. 2. Informa UK Limited, pp. 153–158, 2004.
LibreCat: https://research-explorer.ista.ac.at/record/12203
DOI: 10.1080/10425170410001667348
PMID: 15352294

X. Cao et al., “Role of the DRM and CM methyltransferases in RNA-directed DNA methylation,” Current Biology, vol. 13, no. 24. Elsevier, pp. 2212–2217, 2003.
LibreCat: https://research-explorer.ista.ac.at/record/9495
DOI: 10.1016/j.cub.2003.11.052
PMID: 14680640

D. Zilberman,  Xiaofeng Cao, and S. E. Jacobsen, “ARGONAUT control of locus-specific siRNA accumulation and DNA and histone methylation,” Science, vol. 299, no. 5607. American Association for the Advancement of Science, pp. 716–719, 2003.
LibreCat: https://research-explorer.ista.ac.at/record/9455
DOI: 10.1126/science.1079695
PMID: 12522258

A. M. Lindroth et al., “Requirement of CHROMOMETHYLAS for maintenance of CpXpG methylation,” Science, vol. 292, no. 5524. American Association for the Advancement of Science, pp. 2077–2080, 2001.
LibreCat: https://research-explorer.ista.ac.at/record/9444
DOI: 10.1126/science.1059745
PMID: 11349138