[{"language":[{"iso":"eng"}],"doi":"10.1103/prxlife.1.013001","quality_controlled":"1","project":[{"_id":"05943252-7A3F-11EA-A408-12923DDC885E","grant_number":"851288","name":"Design Principles of Branching Morphogenesis","call_identifier":"H2020"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"month":"07","publication_identifier":{"issn":["2835-8279"]},"date_created":"2023-09-06T08:30:59Z","date_updated":"2023-09-15T06:39:17Z","volume":1,"author":[{"first_name":"Daniel R","last_name":"Boocock","id":"453AF628-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1585-2631","full_name":"Boocock, Daniel R"},{"last_name":"Hirashima","first_name":"Tsuyoshi","full_name":"Hirashima, Tsuyoshi"},{"full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo","first_name":"Edouard B"}],"publication_status":"published","department":[{"_id":"EdHa"}],"publisher":"American Physical Society","acknowledgement":"We thank all members of the Hannezo group for discussions and suggestions, as well as Sound Wai Phow for technical assistance. This work received funding from the European Research Council under the EU Horizon 2020 research and innovation program Grant Agreement No. 851288 (E.H.), JSPS KAKENHI Grant No. 21H05290, and the Ministry of Education under the Research Centres of Excellence program through the MBI at NUS.","year":"2023","license":"https://creativecommons.org/licenses/by/4.0/","file_date_updated":"2023-09-15T06:30:50Z","ec_funded":1,"article_number":"013001","date_published":"2023-07-20T00:00:00Z","article_type":"original","publication":"PRX Life","citation":{"chicago":"Boocock, Daniel R, Tsuyoshi Hirashima, and Edouard B Hannezo. “Interplay between Mechanochemical Patterning and Glassy Dynamics in Cellular Monolayers.” PRX Life. American Physical Society, 2023. https://doi.org/10.1103/prxlife.1.013001.","mla":"Boocock, Daniel R., et al. “Interplay between Mechanochemical Patterning and Glassy Dynamics in Cellular Monolayers.” PRX Life, vol. 1, no. 1, 013001, American Physical Society, 2023, doi:10.1103/prxlife.1.013001.","short":"D.R. Boocock, T. Hirashima, E.B. Hannezo, PRX Life 1 (2023).","ista":"Boocock DR, Hirashima T, Hannezo EB. 2023. Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. 1(1), 013001.","ieee":"D. R. Boocock, T. Hirashima, and E. B. Hannezo, “Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers,” PRX Life, vol. 1, no. 1. American Physical Society, 2023.","apa":"Boocock, D. R., Hirashima, T., & Hannezo, E. B. (2023). Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. American Physical Society. https://doi.org/10.1103/prxlife.1.013001","ama":"Boocock DR, Hirashima T, Hannezo EB. Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. 2023;1(1). doi:10.1103/prxlife.1.013001"},"day":"20","has_accepted_license":"1","article_processing_charge":"Yes","file":[{"checksum":"f881d98c89eb9f1aa136d7b781511553","success":1,"date_updated":"2023-09-15T06:30:50Z","date_created":"2023-09-15T06:30:50Z","relation":"main_file","file_id":"14335","content_type":"application/pdf","file_size":2559520,"creator":"dernst","access_level":"open_access","file_name":"2023_PRXLife_Boocock.pdf"}],"oa_version":"Published Version","title":"Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers","status":"public","ddc":["570"],"intvolume":" 1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14277","abstract":[{"lang":"eng","text":"Living tissues are characterized by an intrinsically mechanochemical interplay of active physical forces and complex biochemical signaling pathways. Either feature alone can give rise to complex emergent phenomena, for example, mechanically driven glassy dynamics and rigidity transitions, or chemically driven reaction-diffusion instabilities. An important question is how to quantitatively assess the contribution of these different cues to the large-scale dynamics of biological materials. We address this in Madin-Darby canine kidney (MDCK) monolayers, considering both mechanochemical feedback between extracellular signal-regulated kinase (ERK) signaling activity and cellular density as well as a mechanically active tissue rheology via a self-propelled vertex model. We show that the relative strength of active migration forces to mechanochemical couplings controls a transition from a uniform active glass to periodic spatiotemporal waves. We parametrize the model from published experimental data sets on MDCK monolayers and use it to make new predictions on the correlation functions of cellular dynamics and the dynamics of topological defects associated with the oscillatory phase of cells. Interestingly, MDCK monolayers are best described by an intermediary parameter region in which both mechanochemical couplings and noisy active propulsion have a strong influence on the dynamics. Finally, we study how tissue rheology and ERK waves produce feedback on one another and uncover a mechanism via which tissue fluidity can be controlled by mechanochemical waves at both the local and global levels."}],"issue":"1","type":"journal_article"},{"scopus_import":"1","article_processing_charge":"Yes","has_accepted_license":"1","day":"26","article_type":"original","citation":{"ama":"Nardin M, Käfer K, Stella F, Csicsvari JL. Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions. Cell Reports. 2023;42(9). doi:10.1016/j.celrep.2023.113015","ieee":"M. Nardin, K. Käfer, F. Stella, and J. L. Csicsvari, “Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions,” Cell Reports, vol. 42, no. 9. Elsevier, 2023.","apa":"Nardin, M., Käfer, K., Stella, F., & Csicsvari, J. L. (2023). Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2023.113015","ista":"Nardin M, Käfer K, Stella F, Csicsvari JL. 2023. Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions. Cell Reports. 42(9), 113015.","short":"M. Nardin, K. Käfer, F. Stella, J.L. Csicsvari, Cell Reports 42 (2023).","mla":"Nardin, Michele, et al. “Theta Oscillations as a Substrate for Medial Prefrontal-Hippocampal Assembly Interactions.” Cell Reports, vol. 42, no. 9, 113015, Elsevier, 2023, doi:10.1016/j.celrep.2023.113015.","chicago":"Nardin, Michele, Karola Käfer, Federico Stella, and Jozsef L Csicsvari. “Theta Oscillations as a Substrate for Medial Prefrontal-Hippocampal Assembly Interactions.” Cell Reports. Elsevier, 2023. https://doi.org/10.1016/j.celrep.2023.113015."},"publication":"Cell Reports","date_published":"2023-09-26T00:00:00Z","type":"journal_article","issue":"9","abstract":[{"text":"The execution of cognitive functions requires coordinated circuit activity across different brain areas that involves the associated firing of neuronal assemblies. Here, we tested the circuit mechanism behind assembly interactions between the hippocampus and the medial prefrontal cortex (mPFC) of adult rats by recording neuronal populations during a rule-switching task. We identified functionally coupled CA1-mPFC cells that synchronized their activity beyond that expected from common spatial coding or oscillatory firing. When such cell pairs fired together, the mPFC cell strongly phase locked to CA1 theta oscillations and maintained consistent theta firing phases, independent of the theta timing of their CA1 counterpart. These functionally connected CA1-mPFC cells formed interconnected assemblies. While firing together with their CA1 assembly partners, mPFC cells fired along specific theta sequences. Our results suggest that upregulated theta oscillatory firing of mPFC cells can signal transient interactions with specific CA1 assemblies, thus enabling distributed computations.","lang":"eng"}],"intvolume":" 42","title":"Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions","ddc":["570"],"status":"public","_id":"14314","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"date_updated":"2023-09-15T07:12:46Z","date_created":"2023-09-15T07:12:46Z","checksum":"ca77a304fb813c292550b8604b0fb41d","success":1,"relation":"main_file","file_id":"14337","file_size":4879455,"content_type":"application/pdf","creator":"dernst","file_name":"2023_CellPress_Nardin.pdf","access_level":"open_access"}],"publication_identifier":{"eissn":["2211-1247"]},"month":"09","project":[{"_id":"257BBB4C-B435-11E9-9278-68D0E5697425","grant_number":"607616","call_identifier":"FP7","name":"Inter-and intracellular signalling in schizophrenia"}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"pmid":["37632747"]},"language":[{"iso":"eng"}],"doi":"10.1016/j.celrep.2023.113015","article_number":"113015","ec_funded":1,"file_date_updated":"2023-09-15T07:12:46Z","department":[{"_id":"JoCs"}],"publisher":"Elsevier","publication_status":"published","pmid":1,"year":"2023","acknowledgement":"We thank A. Cumpelik, H. Chiossi, and L. Bollman for comments on an earlier version of this manuscript. This work was funded by EU-FP7 MC-ITN IN-SENS (grant 607616).","volume":42,"date_updated":"2023-09-15T07:14:12Z","date_created":"2023-09-10T22:01:11Z","author":[{"full_name":"Nardin, Michele","first_name":"Michele","last_name":"Nardin","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8849-6570"},{"full_name":"Käfer, Karola","last_name":"Käfer","first_name":"Karola","id":"2DAA49AA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Stella","first_name":"Federico","orcid":"0000-0001-9439-3148","id":"39AF1E74-F248-11E8-B48F-1D18A9856A87","full_name":"Stella, Federico"},{"first_name":"Jozsef L","last_name":"Csicsvari","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036","full_name":"Csicsvari, Jozsef L"}]},{"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37665327"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.7554/eLife.89066","publication_identifier":{"eissn":["2050-084X"]},"month":"09","publisher":"eLife Sciences Publications","department":[{"_id":"MaHe"}],"publication_status":"published","pmid":1,"acknowledgement":"We thank the members of the Hetzer laboratory, Tony Hunter (Salk), Lorenzo Puri (Sanford Burnham Prebys), and Jongmin Kim (Massachusetts General Hospital) for the critical reading of the manuscript; Kenneth Diffenderfer and Aimee Pankonin (Stem Cell Core at the Salk Institute) for help with neurogenesis; Carol Marchetto and Fred Gage (Salk) for providing H9 embryonic stem cells; Lorenzo Puri, Alexandra Sacco, and Luca Caputo (Sanford Burnham Prebys) for helpful discussions and sharing mouse primary myoblasts. This work was supported by a Glenn Foundation for Medical Research Postdoctoral Fellowship in Aging Research (UHC), the NOMIS foundation (MWH), and the National Institutes of Health (R01 NS096786 to MWH and K01 AR080828 to UHC). This work was also supported by the Mass Spectrometry Core of the Salk Institute with funding from NIH-NCI CCSG: P30 014195 and the Helmsley Center for Genomic Medicine. We thank Jolene Diedrich and Antonio Pinto for technical support.","year":"2023","volume":12,"date_created":"2023-09-10T22:01:11Z","date_updated":"2023-09-15T07:07:10Z","author":[{"full_name":"Cho, Ukrae H.","first_name":"Ukrae H.","last_name":"Cho"},{"last_name":"Hetzer","first_name":"Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"Hetzer, Martin W"}],"article_number":"RP89066","file_date_updated":"2023-09-15T06:59:10Z","article_type":"original","citation":{"ama":"Cho UH, Hetzer M. Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress. eLife. 2023;12. doi:10.7554/eLife.89066","ista":"Cho UH, Hetzer M. 2023. Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress. eLife. 12, RP89066.","apa":"Cho, U. H., & Hetzer, M. (2023). Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.89066","ieee":"U. H. Cho and M. Hetzer, “Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress,” eLife, vol. 12. eLife Sciences Publications, 2023.","mla":"Cho, Ukrae H., and Martin Hetzer. “Caspase-Mediated Nuclear Pore Complex Trimming in Cell Differentiation and Endoplasmic Reticulum Stress.” ELife, vol. 12, RP89066, eLife Sciences Publications, 2023, doi:10.7554/eLife.89066.","short":"U.H. Cho, M. Hetzer, ELife 12 (2023).","chicago":"Cho, Ukrae H., and Martin Hetzer. “Caspase-Mediated Nuclear Pore Complex Trimming in Cell Differentiation and Endoplasmic Reticulum Stress.” ELife. eLife Sciences Publications, 2023. https://doi.org/10.7554/eLife.89066."},"publication":"eLife","date_published":"2023-09-04T00:00:00Z","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"Yes","day":"04","intvolume":" 12","status":"public","title":"Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress","ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14315","file":[{"access_level":"open_access","file_name":"2023_eLife_Cho.pdf","creator":"dernst","file_size":3703097,"content_type":"application/pdf","file_id":"14336","relation":"main_file","success":1,"checksum":"db24bf3d595507387b48d3799c33e289","date_updated":"2023-09-15T06:59:10Z","date_created":"2023-09-15T06:59:10Z"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"text":"During apoptosis, caspases degrade 8 out of ~30 nucleoporins to irreversibly demolish the nuclear pore complex. However, for poorly understood reasons, caspases are also activated during cell differentiation. Here, we show that sublethal activation of caspases during myogenesis results in the transient proteolysis of four peripheral Nups and one transmembrane Nup. ‘Trimmed’ NPCs become nuclear export-defective, and we identified in an unbiased manner several classes of cytoplasmic, plasma membrane, and mitochondrial proteins that rapidly accumulate in the nucleus. NPC trimming by non-apoptotic caspases was also observed in neurogenesis and endoplasmic reticulum stress. Our results suggest that caspases can reversibly modulate nuclear transport activity, which allows them to function as agents of cell differentiation and adaptation at sublethal levels.","lang":"eng"}]},{"license":"https://creativecommons.org/licenses/by-nd/4.0/","file_date_updated":"2023-09-15T08:02:09Z","ec_funded":1,"article_number":"P3.10","date_updated":"2023-09-15T08:12:30Z","date_created":"2023-09-10T22:01:12Z","volume":30,"author":[{"full_name":"Anastos, Michael","first_name":"Michael","last_name":"Anastos","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb"},{"full_name":"Fabian, David","first_name":"David","last_name":"Fabian"},{"last_name":"Müyesser","first_name":"Alp","full_name":"Müyesser, Alp"},{"full_name":"Szabó, Tibor","last_name":"Szabó","first_name":"Tibor"}],"publication_status":"published","publisher":"Electronic Journal of Combinatorics","department":[{"_id":"MaKw"}],"acknowledgement":"Anastos has received funding from the European Union’s Horizon 2020 research and in-novation programme under the Marie Sk lodowska-Curie grant agreement No 101034413.Fabian’s research is supported by the Deutsche Forschungsgemeinschaft (DFG, GermanResearch Foundation) Graduiertenkolleg “Facets of Complexity” (GRK 2434).","year":"2023","month":"07","publication_identifier":{"eissn":["1077-8926"]},"language":[{"iso":"eng"}],"doi":"10.37236/11714","quality_controlled":"1","project":[{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"}],"external_id":{"arxiv":["2212.03100"]},"tmp":{"short":"CC BY-ND (4.0)","image":"/image/cc_by_nd.png","name":"Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nd/4.0/legalcode"},"oa":1,"abstract":[{"lang":"eng","text":"We study multigraphs whose edge-sets are the union of three perfect matchings, M1, M2, and M3. Given such a graph G and any a1; a2; a3 2 N with a1 +a2 +a3 6 n - 2, we show there exists a matching M of G with jM \\ Mij = ai for each i 2 f1; 2; 3g. The bound n - 2 in the theorem is best possible in general. We conjecture however that if G is bipartite, the same result holds with n - 2 replaced by n - 1. We give a construction that shows such a result would be tight. We\r\nalso make a conjecture generalising the Ryser-Brualdi-Stein conjecture with colour\r\nmultiplicities."}],"issue":"3","type":"journal_article","oa_version":"Published Version","file":[{"creator":"dernst","file_size":247917,"content_type":"application/pdf","access_level":"open_access","file_name":"2023_elecJournCombinatorics_Anastos.pdf","success":1,"checksum":"52c46c8cb329f9aaee9ade01525f317b","date_created":"2023-09-15T08:02:09Z","date_updated":"2023-09-15T08:02:09Z","file_id":"14338","relation":"main_file"}],"title":"Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets","status":"public","ddc":["510"],"intvolume":" 30","_id":"14319","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"28","has_accepted_license":"1","article_processing_charge":"Yes","scopus_import":"1","date_published":"2023-07-28T00:00:00Z","article_type":"original","publication":"Electronic Journal of Combinatorics","citation":{"apa":"Anastos, M., Fabian, D., Müyesser, A., & Szabó, T. (2023). Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets. Electronic Journal of Combinatorics. Electronic Journal of Combinatorics. https://doi.org/10.37236/11714","ieee":"M. Anastos, D. Fabian, A. Müyesser, and T. Szabó, “Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets,” Electronic Journal of Combinatorics, vol. 30, no. 3. Electronic Journal of Combinatorics, 2023.","ista":"Anastos M, Fabian D, Müyesser A, Szabó T. 2023. Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets. Electronic Journal of Combinatorics. 30(3), P3.10.","ama":"Anastos M, Fabian D, Müyesser A, Szabó T. Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets. Electronic Journal of Combinatorics. 2023;30(3). doi:10.37236/11714","chicago":"Anastos, Michael, David Fabian, Alp Müyesser, and Tibor Szabó. “Splitting Matchings and the Ryser-Brualdi-Stein Conjecture for Multisets.” Electronic Journal of Combinatorics. Electronic Journal of Combinatorics, 2023. https://doi.org/10.37236/11714.","short":"M. Anastos, D. Fabian, A. Müyesser, T. Szabó, Electronic Journal of Combinatorics 30 (2023).","mla":"Anastos, Michael, et al. “Splitting Matchings and the Ryser-Brualdi-Stein Conjecture for Multisets.” Electronic Journal of Combinatorics, vol. 30, no. 3, P3.10, Electronic Journal of Combinatorics, 2023, doi:10.37236/11714."}},{"date_published":"2023-07-17T00:00:00Z","page":"16-39","citation":{"ama":"Sun Y, Fu H, Chatterjee K, Goharshady AK. Automated tail bound analysis for probabilistic recurrence relations. In: Computer Aided Verification. Vol 13966. Springer Nature; 2023:16-39. doi:10.1007/978-3-031-37709-9_2","ista":"Sun Y, Fu H, Chatterjee K, Goharshady AK. 2023. Automated tail bound analysis for probabilistic recurrence relations. Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 13966, 16–39.","ieee":"Y. Sun, H. Fu, K. Chatterjee, and A. K. Goharshady, “Automated tail bound analysis for probabilistic recurrence relations,” in Computer Aided Verification, Paris, France, 2023, vol. 13966, pp. 16–39.","apa":"Sun, Y., Fu, H., Chatterjee, K., & Goharshady, A. K. (2023). Automated tail bound analysis for probabilistic recurrence relations. In Computer Aided Verification (Vol. 13966, pp. 16–39). Paris, France: Springer Nature. https://doi.org/10.1007/978-3-031-37709-9_2","mla":"Sun, Yican, et al. “Automated Tail Bound Analysis for Probabilistic Recurrence Relations.” Computer Aided Verification, vol. 13966, Springer Nature, 2023, pp. 16–39, doi:10.1007/978-3-031-37709-9_2.","short":"Y. Sun, H. Fu, K. Chatterjee, A.K. Goharshady, in:, Computer Aided Verification, Springer Nature, 2023, pp. 16–39.","chicago":"Sun, Yican, Hongfei Fu, Krishnendu Chatterjee, and Amir Kafshdar Goharshady. “Automated Tail Bound Analysis for Probabilistic Recurrence Relations.” In Computer Aided Verification, 13966:16–39. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-37709-9_2."},"publication":"Computer Aided Verification","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"17","scopus_import":"1","file":[{"file_size":624647,"content_type":"application/pdf","creator":"dernst","file_name":"2023_LNCS_Sun.pdf","access_level":"open_access","date_updated":"2023-09-20T08:24:47Z","date_created":"2023-09-20T08:24:47Z","checksum":"42917e086f8c7699f3bccf84f74fe000","success":1,"relation":"main_file","file_id":"14348"}],"oa_version":"Published Version","intvolume":" 13966","title":"Automated tail bound analysis for probabilistic recurrence relations","ddc":["000"],"status":"public","_id":"14318","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Probabilistic recurrence relations (PRRs) are a standard formalism for describing the runtime of a randomized algorithm. Given a PRR and a time limit κ, we consider the tail probability Pr[T≥κ], i.e., the probability that the randomized runtime T of the PRR exceeds κ. Our focus is the formal analysis of tail bounds that aims at finding a tight asymptotic upper bound u≥Pr[T≥κ]. To address this problem, the classical and most well-known approach is the cookbook method by Karp (JACM 1994), while other approaches are mostly limited to deriving tail bounds of specific PRRs via involved custom analysis.\r\nIn this work, we propose a novel approach for deriving the common exponentially-decreasing tail bounds for PRRs whose preprocessing time and random passed sizes observe discrete or (piecewise) uniform distribution and whose recursive call is either a single procedure call or a divide-and-conquer. We first establish a theoretical approach via Markov’s inequality, and then instantiate the theoretical approach with a template-based algorithmic approach via a refined treatment of exponentiation. Experimental evaluation shows that our algorithmic approach is capable of deriving tail bounds that are (i) asymptotically tighter than Karp’s method, (ii) match the best-known manually-derived asymptotic tail bound for QuickSelect, and (iii) is only slightly worse (with a loglogn factor) than the manually-proven optimal asymptotic tail bound for QuickSort. Moreover, our algorithmic approach handles all examples (including realistic PRRs such as QuickSort, QuickSelect, DiameterComputation, etc.) in less than 0.1 s, showing that our approach is efficient in practice."}],"alternative_title":["LNCS"],"type":"conference","language":[{"iso":"eng"}],"doi":"10.1007/978-3-031-37709-9_2","conference":{"end_date":"2023-07-22","location":"Paris, France","start_date":"2023-07-17","name":"CAV: Computer Aided Verification"},"project":[{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020"}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031377082"]},"month":"07","volume":13966,"date_created":"2023-09-10T22:01:12Z","date_updated":"2023-09-20T08:25:57Z","related_material":{"link":[{"url":"https://github.com/boyvolcano/PRR","relation":"software"}]},"author":[{"full_name":"Sun, Yican","last_name":"Sun","first_name":"Yican"},{"full_name":"Fu, Hongfei","first_name":"Hongfei","last_name":"Fu"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"last_name":"Goharshady","first_name":"Amir Kafshdar","orcid":"0000-0003-1702-6584","id":"391365CE-F248-11E8-B48F-1D18A9856A87","full_name":"Goharshady, Amir Kafshdar"}],"publisher":"Springer Nature","department":[{"_id":"KrCh"}],"publication_status":"published","year":"2023","acknowledgement":"We thank Prof. Bican Xia for valuable information on the exponential theory of reals. The work is partially supported by the National Natural Science Foundation of China (NSFC) with Grant No. 62172271, ERC CoG 863818 (ForM-SMArt), the Hong Kong Research Grants Council ECS Project Number 26208122, the HKUST-Kaisa Joint Research Institute Project Grant HKJRI3A-055 and the HKUST Startup Grant R9272.","ec_funded":1,"file_date_updated":"2023-09-20T08:24:47Z"},{"abstract":[{"lang":"eng","text":"Markov decision processes can be viewed as transformers of probability distributions. While this view is useful from a practical standpoint to reason about trajectories of distributions, basic reachability and safety problems are known to be computationally intractable (i.e., Skolem-hard) to solve in such models. Further, we show that even for simple examples of MDPs, strategies for safety objectives over distributions can require infinite memory and randomization.\r\nIn light of this, we present a novel overapproximation approach to synthesize strategies in an MDP, such that a safety objective over the distributions is met. More precisely, we develop a new framework for template-based synthesis of certificates as affine distributional and inductive invariants for safety objectives in MDPs. We provide two algorithms within this framework. One can only synthesize memoryless strategies, but has relative completeness guarantees, while the other can synthesize general strategies. The runtime complexity of both algorithms is in PSPACE. We implement these algorithms and show that they can solve several non-trivial examples."}],"type":"conference","alternative_title":["LNCS"],"oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2023_LNCS_Akshay.pdf","file_size":531745,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"14349","checksum":"f143c8eedf609f20f2aad2eeb496d53f","success":1,"date_updated":"2023-09-20T08:46:43Z","date_created":"2023-09-20T08:46:43Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14317","intvolume":" 13966","title":"MDPs as distribution transformers: Affine invariant synthesis for safety objectives","ddc":["000"],"status":"public","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"17","scopus_import":"1","date_published":"2023-07-17T00:00:00Z","citation":{"ieee":"S. Akshay, K. Chatterjee, T. Meggendorfer, and D. Zikelic, “MDPs as distribution transformers: Affine invariant synthesis for safety objectives,” in International Conference on Computer Aided Verification, Paris, France, 2023, vol. 13966, pp. 86–112.","apa":"Akshay, S., Chatterjee, K., Meggendorfer, T., & Zikelic, D. (2023). MDPs as distribution transformers: Affine invariant synthesis for safety objectives. In International Conference on Computer Aided Verification (Vol. 13966, pp. 86–112). Paris, France: Springer Nature. https://doi.org/10.1007/978-3-031-37709-9_5","ista":"Akshay S, Chatterjee K, Meggendorfer T, Zikelic D. 2023. MDPs as distribution transformers: Affine invariant synthesis for safety objectives. International Conference on Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 13966, 86–112.","ama":"Akshay S, Chatterjee K, Meggendorfer T, Zikelic D. MDPs as distribution transformers: Affine invariant synthesis for safety objectives. In: International Conference on Computer Aided Verification. Vol 13966. Springer Nature; 2023:86-112. doi:10.1007/978-3-031-37709-9_5","chicago":"Akshay, S., Krishnendu Chatterjee, Tobias Meggendorfer, and Dorde Zikelic. “MDPs as Distribution Transformers: Affine Invariant Synthesis for Safety Objectives.” In International Conference on Computer Aided Verification, 13966:86–112. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-37709-9_5.","short":"S. Akshay, K. Chatterjee, T. Meggendorfer, D. Zikelic, in:, International Conference on Computer Aided Verification, Springer Nature, 2023, pp. 86–112.","mla":"Akshay, S., et al. “MDPs as Distribution Transformers: Affine Invariant Synthesis for Safety Objectives.” International Conference on Computer Aided Verification, vol. 13966, Springer Nature, 2023, pp. 86–112, doi:10.1007/978-3-031-37709-9_5."},"publication":"International Conference on Computer Aided Verification","page":"86-112","ec_funded":1,"file_date_updated":"2023-09-20T08:46:43Z","author":[{"full_name":"Akshay, S.","first_name":"S.","last_name":"Akshay"},{"first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"last_name":"Meggendorfer","first_name":"Tobias","orcid":"0000-0002-1712-2165","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","full_name":"Meggendorfer, Tobias"},{"last_name":"Zikelic","first_name":"Dorde","orcid":"0000-0002-4681-1699","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde"}],"volume":13966,"date_created":"2023-09-10T22:01:12Z","date_updated":"2023-09-20T09:04:40Z","year":"2023","acknowledgement":"This work was supported in part by the ERC CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385 as well as DST/CEFIPRA/INRIA project EQuaVE and SERB Matrices grant MTR/2018/00074.","department":[{"_id":"KrCh"}],"publisher":"Springer Nature","publication_status":"published","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031377082"],"issn":["0302-9743"]},"month":"07","doi":"10.1007/978-3-031-37709-9_5","conference":{"name":"CAV: Computer Aided Verification","end_date":"2023-07-22","start_date":"2023-07-17","location":"Paris, France"},"language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","name":"International IST Doctoral Program","call_identifier":"H2020"},{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"quality_controlled":"1"},{"author":[{"last_name":"Nagano","first_name":"Makoto","full_name":"Nagano, Makoto"},{"full_name":"Aoshima, Kaito","first_name":"Kaito","last_name":"Aoshima"},{"full_name":"Shimamura, Hiroki","last_name":"Shimamura","first_name":"Hiroki"},{"full_name":"Siekhaus, Daria E","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8323-8353","first_name":"Daria E","last_name":"Siekhaus"},{"full_name":"Toshima, Junko Y.","last_name":"Toshima","first_name":"Junko Y."},{"full_name":"Toshima, Jiro","last_name":"Toshima","first_name":"Jiro"}],"date_updated":"2023-09-20T09:14:15Z","date_created":"2023-09-10T22:01:12Z","volume":136,"year":"2023","pmid":1,"publication_status":"published","department":[{"_id":"DaSi"}],"publisher":"The Company of Biologists","article_number":"jcs261448","doi":"10.1242/jcs.261448","language":[{"iso":"eng"}],"oa":1,"external_id":{"pmid":["37539494"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2023.03.27.534325"}],"quality_controlled":"1","month":"09","publication_identifier":{"eissn":["1477-9137"],"issn":["0021-9533"]},"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14316","title":"Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway","status":"public","intvolume":" 136","abstract":[{"lang":"eng","text":"Clathrin-mediated vesicle trafficking plays central roles in post-Golgi transport. In yeast (Saccharomyces cerevisiae), the AP-1 complex and GGA adaptors are predicted to generate distinct transport vesicles at the trans-Golgi network (TGN), and the epsin-related proteins Ent3p and Ent5p (collectively Ent3p/5p) act as accessories for these adaptors. Recently, we showed that vesicle transport from the TGN is crucial for yeast Rab5 (Vps21p)-mediated endosome formation, and that Ent3p/5p are crucial for this process, whereas AP-1 and GGA adaptors are dispensable. However, these observations were incompatible with previous studies showing that these adaptors are required for Ent3p/5p recruitment to the TGN, and thus the overall mechanism responsible for regulation of Vps21p activity remains ambiguous. Here, we investigated the functional relationships between clathrin adaptors in post-Golgi-mediated Vps21p activation. We show that AP-1 disruption in the ent3Δ5Δ mutant impaired transport of the Vps21p guanine nucleotide exchange factor Vps9p transport to the Vps21p compartment and severely reduced Vps21p activity. Additionally, GGA adaptors, the phosphatidylinositol-4-kinase Pik1p and Rab11 GTPases Ypt31p and Ypt32p were found to have partially overlapping functions for recruitment of AP-1 and Ent3p/5p to the TGN. These findings suggest a distinct role of clathrin adaptors for Vps21p activation in the TGN–endosome trafficking pathway."}],"issue":"17","type":"journal_article","date_published":"2023-09-01T00:00:00Z","publication":"Journal of Cell Science","citation":{"ama":"Nagano M, Aoshima K, Shimamura H, Siekhaus DE, Toshima JY, Toshima J. Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway. Journal of Cell Science. 2023;136(17). doi:10.1242/jcs.261448","ista":"Nagano M, Aoshima K, Shimamura H, Siekhaus DE, Toshima JY, Toshima J. 2023. Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway. Journal of Cell Science. 136(17), jcs261448.","ieee":"M. Nagano, K. Aoshima, H. Shimamura, D. E. Siekhaus, J. Y. Toshima, and J. Toshima, “Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway,” Journal of Cell Science, vol. 136, no. 17. The Company of Biologists, 2023.","apa":"Nagano, M., Aoshima, K., Shimamura, H., Siekhaus, D. E., Toshima, J. Y., & Toshima, J. (2023). Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway. Journal of Cell Science. The Company of Biologists. https://doi.org/10.1242/jcs.261448","mla":"Nagano, Makoto, et al. “Distinct Role of TGN-Resident Clathrin Adaptors for Vps21p Activation in the TGN-Endosome Trafficking Pathway.” Journal of Cell Science, vol. 136, no. 17, jcs261448, The Company of Biologists, 2023, doi:10.1242/jcs.261448.","short":"M. Nagano, K. Aoshima, H. Shimamura, D.E. Siekhaus, J.Y. Toshima, J. Toshima, Journal of Cell Science 136 (2023).","chicago":"Nagano, Makoto, Kaito Aoshima, Hiroki Shimamura, Daria E Siekhaus, Junko Y. Toshima, and Jiro Toshima. “Distinct Role of TGN-Resident Clathrin Adaptors for Vps21p Activation in the TGN-Endosome Trafficking Pathway.” Journal of Cell Science. The Company of Biologists, 2023. https://doi.org/10.1242/jcs.261448."},"article_type":"original","day":"01","article_processing_charge":"No","scopus_import":"1"},{"quality_controlled":"1","external_id":{"arxiv":["2210.06310"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2210.06310","open_access":"1"}],"oa":1,"language":[{"iso":"eng"}],"doi":"10.1103/physrevb.108.125411","month":"09","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"publication_status":"published","publisher":"American Physical Society","department":[{"_id":"MaSe"},{"_id":"ChLa"},{"_id":"MiLe"}],"year":"2023","acknowledgement":"A.F.Y. acknowledges primary support from the Department of Energy under award DE-SC0020043, and additional support from the Gordon and Betty Moore Foundation under award GBMF9471 for group operations.","date_created":"2023-09-12T07:12:12Z","date_updated":"2023-09-20T09:38:24Z","volume":108,"author":[{"full_name":"Henderson, Paul M","orcid":"0000-0002-5198-7445","id":"13C09E74-18D9-11E9-8878-32CFE5697425","last_name":"Henderson","first_name":"Paul M"},{"full_name":"Ghazaryan, Areg","first_name":"Areg","last_name":"Ghazaryan","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9666-3543"},{"last_name":"Zibrov","first_name":"Alexander A.","full_name":"Zibrov, Alexander A."},{"full_name":"Young, Andrea F.","last_name":"Young","first_name":"Andrea F."},{"full_name":"Serbyn, Maksym","last_name":"Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}],"article_number":"125411","article_type":"original","publication":"Physical Review B","citation":{"ama":"Henderson PM, Ghazaryan A, Zibrov AA, Young AF, Serbyn M. Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. 2023;108(12). doi:10.1103/physrevb.108.125411","apa":"Henderson, P. M., Ghazaryan, A., Zibrov, A. A., Young, A. F., & Serbyn, M. (2023). Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. American Physical Society. https://doi.org/10.1103/physrevb.108.125411","ieee":"P. M. Henderson, A. Ghazaryan, A. A. Zibrov, A. F. Young, and M. Serbyn, “Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene,” Physical Review B, vol. 108, no. 12. American Physical Society, 2023.","ista":"Henderson PM, Ghazaryan A, Zibrov AA, Young AF, Serbyn M. 2023. Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. 108(12), 125411.","short":"P.M. Henderson, A. Ghazaryan, A.A. Zibrov, A.F. Young, M. Serbyn, Physical Review B 108 (2023).","mla":"Henderson, Paul M., et al. “Deep Learning Extraction of Band Structure Parameters from Density of States: A Case Study on Trilayer Graphene.” Physical Review B, vol. 108, no. 12, 125411, American Physical Society, 2023, doi:10.1103/physrevb.108.125411.","chicago":"Henderson, Paul M, Areg Ghazaryan, Alexander A. Zibrov, Andrea F. Young, and Maksym Serbyn. “Deep Learning Extraction of Band Structure Parameters from Density of States: A Case Study on Trilayer Graphene.” Physical Review B. American Physical Society, 2023. https://doi.org/10.1103/physrevb.108.125411."},"date_published":"2023-09-15T00:00:00Z","scopus_import":"1","day":"15","article_processing_charge":"No","status":"public","title":"Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene","intvolume":" 108","_id":"14320","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","type":"journal_article","abstract":[{"lang":"eng","text":"The development of two-dimensional materials has resulted in a diverse range of novel, high-quality compounds with increasing complexity. A key requirement for a comprehensive quantitative theory is the accurate determination of these materials' band structure parameters. However, this task is challenging due to the intricate band structures and the indirect nature of experimental probes. In this work, we introduce a general framework to derive band structure parameters from experimental data using deep neural networks. We applied our method to the penetration field capacitance measurement of trilayer graphene, an effective probe of its density of states. First, we demonstrate that a trained deep network gives accurate predictions for the penetration field capacitance as a function of tight-binding parameters. Next, we use the fast and accurate predictions from the trained network to automatically determine tight-binding parameters directly from experimental data, with extracted parameters being in a good agreement with values in the literature. We conclude by discussing potential applications of our method to other materials and experimental techniques beyond penetration field capacitance."}],"issue":"12"},{"abstract":[{"lang":"eng","text":"Nonergodic systems, whose out-of-equilibrium dynamics fail to thermalize, provide a fascinating research direction both for fundamental reasons and for application in state of the art quantum devices.\r\nGoing beyond the description of statistical mechanics, ergodicity breaking yields a new paradigm in quantum many-body physics, introducing novel phases of matter with no counterpart at equilibrium.\r\nIn this Thesis, we address different open questions in the field, focusing on disorder-induced many-body localization (MBL) and on weak ergodicity breaking in kinetically constrained models.\r\nIn particular, we contribute to the debate about transport in kinetically constrained models, studying the effect of $U(1)$ conservation and inversion-symmetry breaking in a family of quantum East models.\r\nUsing tensor network techniques, we analyze the dynamics of large MBL systems beyond the limit of exact numerical methods.\r\nIn this setting, we approach the debated topic of the coexistence of localized and thermal eigenstates separated by energy thresholds known as many-body mobility edges.\r\nInspired by recent experiments, our work further investigates the localization of a small bath induced by the coupling to a large localized chain, the so-called MBL proximity effect.\r\n\r\nIn the first Chapter, we introduce a family of particle-conserving kinetically constrained models, inspired by the quantum East model.\r\nThe system we study features strong inversion-symmetry breaking, due to the nature of the correlated hopping.\r\nWe show that these models host so-called quantum Hilbert space fragmentation, consisting of disconnected subsectors in an entangled basis, and further provide an analytical description of this phenomenon.\r\nWe further probe its effect on dynamics of simple product states, showing revivals in fidelity and local observalbes.\r\nThe study of dynamics within the largest subsector reveals an anomalous transient superdiffusive behavior crossing over to slow logarithmic dynamics at later times.\r\nThis work suggests that particle conserving constrained models with inversion-symmetry breaking realize new universality classes of dynamics and invite their further theoretical and experimental studies.\r\n\r\nNext, we use kinetic constraints and disorder to design a model with many-body mobility edges in particle density.\r\nThis feature allows to study the dynamics of localized and thermal states in large systems beyond the limitations of previous studies.\r\nThe time-evolution shows typical signatures of localization at small densities, replaced by thermal behavior at larger densities.\r\nOur results provide evidence in favor of the stability of many-body mobility edges, which was recently challenged by a theoretical argument.\r\nTo support our findings, we probe the mechanism proposed as a cause of delocalization in many-body localized systems with mobility edges suggesting its ineffectiveness in the model studied.\r\n\r\nIn the last Chapter of this Thesis, we address the topic of many-body localization proximity effect.\r\nWe study a model inspired by recent experiments, featuring Anderson localized coupled to a small bath of free hard-core bosons.\r\nThe interaction among the two particle species results in non-trivial dynamics, which we probe using tensor network techniques.\r\nOur simulations show convincing evidence of many-body localization proximity effect when the bath is composed by a single free particle and interactions are strong.\r\nWe furthter observe an anomalous entanglement dynamics, which we explain through a phenomenological theory.\r\nFinally, we extract highly excited eigenstates of large systems, providing supplementary evidence in favor of our findings."}],"alternative_title":["ISTA Thesis"],"type":"dissertation","file":[{"checksum":"5d2de651ef9449c1b8dc27148ca74777","date_created":"2023-03-23T16:42:56Z","date_updated":"2023-03-23T16:42:56Z","file_id":"12753","relation":"source_file","creator":"pbrighi","file_size":42167561,"content_type":"application/zip","access_level":"closed","file_name":"Thesis_sub_PBrighi.zip"},{"success":1,"checksum":"7caa153d4a5b0873a79358787d2dfe1e","date_created":"2023-03-23T16:43:14Z","date_updated":"2023-03-23T16:43:14Z","file_id":"12754","relation":"main_file","creator":"pbrighi","file_size":13977000,"content_type":"application/pdf","access_level":"open_access","file_name":"Thesis_PBrighi.pdf"}],"oa_version":"None","title":"Ergodicity breaking in disordered and kinetically constrained quantum many-body systems","ddc":["530"],"status":"public","_id":"12732","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","has_accepted_license":"1","article_processing_charge":"No","day":"21","date_published":"2023-03-21T00:00:00Z","page":"158","citation":{"mla":"Brighi, Pietro. Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:12732.","short":"P. Brighi, Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems, Institute of Science and Technology Austria, 2023.","chicago":"Brighi, Pietro. “Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:12732.","ama":"Brighi P. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. 2023. doi:10.15479/at:ista:12732","ista":"Brighi P. 2023. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. Institute of Science and Technology Austria.","apa":"Brighi, P. (2023). Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:12732","ieee":"P. Brighi, “Ergodicity breaking in disordered and kinetically constrained quantum many-body systems,” Institute of Science and Technology Austria, 2023."},"license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","ec_funded":1,"file_date_updated":"2023-03-23T16:43:14Z","date_updated":"2023-09-20T10:44:12Z","date_created":"2023-03-17T13:30:48Z","related_material":{"record":[{"id":"11470","relation":"part_of_dissertation","status":"public"},{"id":"8308","relation":"part_of_dissertation","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"11469"},{"id":"12750","status":"public","relation":"part_of_dissertation"}]},"author":[{"last_name":"Brighi","first_name":"Pietro","orcid":"0000-0002-7969-2729","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","full_name":"Brighi, Pietro"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"MaSe"}],"publication_status":"published","year":"2023","publication_identifier":{"issn":["2663-337X"]},"month":"03","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"degree_awarded":"PhD","supervisor":[{"orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn","first_name":"Maksym","full_name":"Serbyn, Maksym"}],"doi":"10.15479/at:ista:12732","project":[{"name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","call_identifier":"H2020","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"oa":1},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2210.15607"]},"oa":1,"project":[{"grant_number":"850899","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","call_identifier":"H2020","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control"}],"quality_controlled":"1","doi":"10.21468/scipostphys.15.3.093","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2542-4653"]},"month":"09","year":"2023","acknowledgement":"We would like to thank Raimel A. Medina, Hansveer Singh, and Dmitry Abanin for useful\r\ndiscussions.The authors acknowledge support by the European Research Council\r\n(ERC) under the European Union’s Horizon 2020 research and innovation program (Grant\r\nAgreement No. 850899). We acknowledge support by the Erwin Schrödinger International\r\nInstitute for Mathematics and Physics (ESI).","department":[{"_id":"MaSe"}],"publisher":"SciPost Foundation","publication_status":"published","related_material":{"record":[{"id":"12750","relation":"earlier_version","status":"public"}]},"author":[{"full_name":"Brighi, Pietro","orcid":"0000-0002-7969-2729","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","last_name":"Brighi","first_name":"Pietro"},{"orcid":"0000-0003-0038-7068","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E","last_name":"Ljubotina","first_name":"Marko","full_name":"Ljubotina, Marko"},{"full_name":"Serbyn, Maksym","last_name":"Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}],"volume":15,"date_created":"2023-09-14T13:08:23Z","date_updated":"2023-09-20T10:46:29Z","article_number":"093","ec_funded":1,"file_date_updated":"2023-09-20T10:46:10Z","citation":{"chicago":"Brighi, Pietro, Marko Ljubotina, and Maksym Serbyn. “Hilbert Space Fragmentation and Slow Dynamics in Particle-Conserving Quantum East Models.” SciPost Physics. SciPost Foundation, 2023. https://doi.org/10.21468/scipostphys.15.3.093.","mla":"Brighi, Pietro, et al. “Hilbert Space Fragmentation and Slow Dynamics in Particle-Conserving Quantum East Models.” SciPost Physics, vol. 15, no. 3, 093, SciPost Foundation, 2023, doi:10.21468/scipostphys.15.3.093.","short":"P. Brighi, M. Ljubotina, M. Serbyn, SciPost Physics 15 (2023).","ista":"Brighi P, Ljubotina M, Serbyn M. 2023. Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. 15(3), 093.","ieee":"P. Brighi, M. Ljubotina, and M. Serbyn, “Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models,” SciPost Physics, vol. 15, no. 3. SciPost Foundation, 2023.","apa":"Brighi, P., Ljubotina, M., & Serbyn, M. (2023). Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.15.3.093","ama":"Brighi P, Ljubotina M, Serbyn M. Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. 2023;15(3). doi:10.21468/scipostphys.15.3.093"},"publication":"SciPost Physics","article_type":"original","date_published":"2023-09-13T00:00:00Z","keyword":["General Physics and Astronomy"],"article_processing_charge":"No","has_accepted_license":"1","day":"13","_id":"14334","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 15","ddc":["530"],"status":"public","title":"Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models","file":[{"content_type":"application/pdf","file_size":4866506,"creator":"dernst","access_level":"open_access","file_name":"2023_SciPostPhysics_Brighi.pdf","checksum":"4cef6a8021f6b6c47ab2f2f2b1387ac2","success":1,"date_updated":"2023-09-20T10:46:10Z","date_created":"2023-09-20T10:46:10Z","relation":"main_file","file_id":"14350"}],"oa_version":"Published Version","type":"journal_article","issue":"3","abstract":[{"text":"Quantum kinetically constrained models have recently attracted significant attention due to their anomalous dynamics and thermalization. In this work, we introduce a hitherto unexplored family of kinetically constrained models featuring conserved particle number and strong inversion-symmetry breaking due to facilitated hopping. We demonstrate that these models provide a generic example of so-called quantum Hilbert space fragmentation, that is manifested in disconnected sectors in the Hilbert space that are not apparent in the computational basis. Quantum Hilbert space fragmentation leads to an exponential in system size number of eigenstates with exactly zero entanglement entropy across several bipartite cuts. These eigenstates can be probed dynamically using quenches from simple initial product states. In addition, we study the particle spreading under unitary dynamics launched from the domain wall state, and find faster than diffusive dynamics at high particle densities, that crosses over into logarithmically slow relaxation at smaller densities. Using a classically simulable cellular automaton, we reproduce the logarithmic dynamics observed in the quantum case. Our work suggests that particle conserving constrained models with inversion symmetry breaking realize so far unexplored dynamical behavior and invite their further theoretical and experimental studies.","lang":"eng"}]},{"issue":"10","abstract":[{"text":"We demonstrate the possibility of a coupling between the magnetization direction of a ferromagnet and the tilting angle of adsorbed achiral molecules. To illustrate the mechanism of the coupling, we analyze a minimal Stoner model that includes Rashba spin–orbit coupling due to the electric field on the surface of the ferromagnet. The proposed mechanism allows us to study magnetic anisotropy of the system with an extended Stoner–Wohlfarth model and argue that adsorbed achiral molecules can change magnetocrystalline anisotropy of the substrate. Our research aims to motivate further experimental studies of the current-free chirality induced spin selectivity effect involving both enantiomers.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"relation":"main_file","file_id":"14322","checksum":"507ab65ab29e2c987c94cabad7c5370b","success":1,"date_created":"2023-09-13T09:34:20Z","date_updated":"2023-09-13T09:34:20Z","access_level":"open_access","file_name":"104103_1_5.0165806.pdf","file_size":5749653,"content_type":"application/pdf","creator":"acappell"}],"intvolume":" 159","ddc":["530"],"title":"Achiral dipoles on a ferromagnet can affect its magnetization direction","status":"public","_id":"14321","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"11","keyword":["Physical and Theoretical Chemistry","General Physics and Astronomy"],"scopus_import":"1","date_published":"2023-09-11T00:00:00Z","article_type":"original","citation":{"short":"R. Al Hyder, A. Cappellaro, M. Lemeshko, A. Volosniev, The Journal of Chemical Physics 159 (2023).","mla":"Al Hyder, Ragheed, et al. “Achiral Dipoles on a Ferromagnet Can Affect Its Magnetization Direction.” The Journal of Chemical Physics, vol. 159, no. 10, 104103, AIP Publishing, 2023, doi:10.1063/5.0165806.","chicago":"Al Hyder, Ragheed, Alberto Cappellaro, Mikhail Lemeshko, and Artem Volosniev. “Achiral Dipoles on a Ferromagnet Can Affect Its Magnetization Direction.” The Journal of Chemical Physics. AIP Publishing, 2023. https://doi.org/10.1063/5.0165806.","ama":"Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. 2023;159(10). doi:10.1063/5.0165806","ieee":"R. Al Hyder, A. Cappellaro, M. Lemeshko, and A. Volosniev, “Achiral dipoles on a ferromagnet can affect its magnetization direction,” The Journal of Chemical Physics, vol. 159, no. 10. AIP Publishing, 2023.","apa":"Al Hyder, R., Cappellaro, A., Lemeshko, M., & Volosniev, A. (2023). Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/5.0165806","ista":"Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. 2023. Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. 159(10), 104103."},"publication":"The Journal of Chemical Physics","ec_funded":1,"file_date_updated":"2023-09-13T09:34:20Z","article_number":"104103","volume":159,"date_created":"2023-09-13T09:25:09Z","date_updated":"2023-09-20T09:48:12Z","author":[{"full_name":"Al Hyder, Ragheed","id":"d1c405be-ae15-11ed-8510-ccf53278162e","first_name":"Ragheed","last_name":"Al Hyder"},{"full_name":"Cappellaro, Alberto","id":"9d13b3cb-30a2-11eb-80dc-f772505e8660","orcid":"0000-0001-6110-2359","first_name":"Alberto","last_name":"Cappellaro"},{"full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","first_name":"Mikhail"},{"full_name":"Volosniev, Artem","last_name":"Volosniev","first_name":"Artem","orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"MiLe"}],"publisher":"AIP Publishing","publication_status":"published","pmid":1,"acknowledgement":"We thank Zhanybek Alpichshev, Mohammad Reza Safari, Binghai Yan, and Yossi Paltiel for enlightening discussions.\r\nM.L. acknowledges support from the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). A. C. received funding from the European Union’s Horizon Europe research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 101062862 - NeqMolRot.","year":"2023","publication_identifier":{"eissn":["1089-7690"],"issn":["0021-9606"]},"month":"09","language":[{"iso":"eng"}],"doi":"10.1063/5.0165806","project":[{"grant_number":"101062862","_id":"bd7b5202-d553-11ed-ba76-9b1c1b258338","name":"Non-equilibrium Field Theory of Molecular Rotations"},{"name":"Angulon: physics and applications of a new quasiparticle","call_identifier":"H2020","_id":"2688CF98-B435-11E9-9278-68D0E5697425","grant_number":"801770"}],"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37694742"],"arxiv":["2306.17592"]}},{"date_created":"2023-09-17T22:01:09Z","date_updated":"2023-09-20T11:50:06Z","volume":123,"author":[{"id":"40D8A3E6-F248-11E8-B48F-1D18A9856A87","first_name":"Dusan","last_name":"Lorenc","full_name":"Lorenc, Dusan"},{"full_name":"Alpichshev, Zhanybek","last_name":"Alpichshev","first_name":"Zhanybek","orcid":"0000-0002-7183-5203","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87"}],"publication_status":"published","department":[{"_id":"ZhAl"}],"publisher":"AIP Publishing","year":"2023","acknowledgement":"The work was supported by IST Austria. The authors would like to gratefully acknowledge the help and assistance of Professor John M. Dudley.","file_date_updated":"2023-09-20T11:36:16Z","article_number":"091104","language":[{"iso":"eng"}],"doi":"10.1063/5.0161713","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2306.09043"]},"month":"08","publication_identifier":{"issn":["0003-6951"]},"oa_version":"Published Version","file":[{"file_name":"2023_ApplPhysLetter_Lorenc.pdf","access_level":"open_access","file_size":1486715,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"14353","date_created":"2023-09-20T11:36:16Z","date_updated":"2023-09-20T11:36:16Z","checksum":"89a1b604d58b209fec66c6b6f919ac98","success":1}],"status":"public","ddc":["530"],"title":"Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam","intvolume":" 123","_id":"14342","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"We propose a simple method to measure nonlinear Kerr refractive index in mid-infrared frequency range that avoids using sophisticated infrared detectors. Our approach is based on using a near-infrared probe beam which interacts with a mid-IR beam via wavelength-non-degenerate cross-phase modulation (XPM). By carefully measuring XPM-induced spectral modifications in the probe beam and comparing the experimental data with simulation results, we extract the value for the non-degenerate Kerr index. Finally, in order to obtain the value of degenerate mid-IR Kerr index, we use the well-established two-band formalism of Sheik-Bahae et al., which is shown to become particularly simple in the limit of low frequencies. The proposed technique is complementary to the conventional techniques, such as z-scan, and has the advantage of not requiring any mid-infrared detectors."}],"issue":"9","type":"journal_article","date_published":"2023-08-28T00:00:00Z","article_type":"original","publication":"Applied Physics Letters","citation":{"ama":"Lorenc D, Alpichshev Z. Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. 2023;123(9). doi:10.1063/5.0161713","ieee":"D. Lorenc and Z. Alpichshev, “Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam,” Applied Physics Letters, vol. 123, no. 9. AIP Publishing, 2023.","apa":"Lorenc, D., & Alpichshev, Z. (2023). Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. AIP Publishing. https://doi.org/10.1063/5.0161713","ista":"Lorenc D, Alpichshev Z. 2023. Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. 123(9), 091104.","short":"D. Lorenc, Z. Alpichshev, Applied Physics Letters 123 (2023).","mla":"Lorenc, Dusan, and Zhanybek Alpichshev. “Mid-Infrared Kerr Index Evaluation via Cross-Phase Modulation with a near-Infrared Probe Beam.” Applied Physics Letters, vol. 123, no. 9, 091104, AIP Publishing, 2023, doi:10.1063/5.0161713.","chicago":"Lorenc, Dusan, and Zhanybek Alpichshev. “Mid-Infrared Kerr Index Evaluation via Cross-Phase Modulation with a near-Infrared Probe Beam.” Applied Physics Letters. AIP Publishing, 2023. https://doi.org/10.1063/5.0161713."},"day":"28","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","scopus_import":"1"},{"oa_version":"None","status":"public","title":"Turbulence suppression by cardiac-cycle-inspired driving of pipe flow","intvolume":" 621","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14341","abstract":[{"lang":"eng","text":"Flows through pipes and channels are, in practice, almost always turbulent, and the multiscale eddying motion is responsible for a major part of the encountered friction losses and pumping costs1. Conversely, for pulsatile flows, in particular for aortic blood flow, turbulence levels remain low despite relatively large peak velocities. For aortic blood flow, high turbulence levels are intolerable as they would damage the shear-sensitive endothelial cell layer2,3,4,5. Here we show that turbulence in ordinary pipe flow is diminished if the flow is driven in a pulsatile mode that incorporates all the key features of the cardiac waveform. At Reynolds numbers comparable to those of aortic blood flow, turbulence is largely inhibited, whereas at much higher speeds, the turbulent drag is reduced by more than 25%. This specific operation mode is more efficient when compared with steady driving, which is the present situation for virtually all fluid transport processes ranging from heating circuits to water, gas and oil pipelines."}],"issue":"7977","type":"journal_article","date_published":"2023-09-07T00:00:00Z","article_type":"original","page":"71-74","publication":"Nature","citation":{"ama":"Scarselli D, Lopez Alonso JM, Varshney A, Hof B. Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. 2023;621(7977):71-74. doi:10.1038/s41586-023-06399-5","apa":"Scarselli, D., Lopez Alonso, J. M., Varshney, A., & Hof, B. (2023). Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. Springer Nature. https://doi.org/10.1038/s41586-023-06399-5","ieee":"D. Scarselli, J. M. Lopez Alonso, A. Varshney, and B. Hof, “Turbulence suppression by cardiac-cycle-inspired driving of pipe flow,” Nature, vol. 621, no. 7977. Springer Nature, pp. 71–74, 2023.","ista":"Scarselli D, Lopez Alonso JM, Varshney A, Hof B. 2023. Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. 621(7977), 71–74.","short":"D. Scarselli, J.M. Lopez Alonso, A. Varshney, B. Hof, Nature 621 (2023) 71–74.","mla":"Scarselli, Davide, et al. “Turbulence Suppression by Cardiac-Cycle-Inspired Driving of Pipe Flow.” Nature, vol. 621, no. 7977, Springer Nature, 2023, pp. 71–74, doi:10.1038/s41586-023-06399-5.","chicago":"Scarselli, Davide, Jose M Lopez Alonso, Atul Varshney, and Björn Hof. “Turbulence Suppression by Cardiac-Cycle-Inspired Driving of Pipe Flow.” Nature. Springer Nature, 2023. https://doi.org/10.1038/s41586-023-06399-5."},"day":"07","article_processing_charge":"No","scopus_import":"1","date_updated":"2023-09-20T12:10:22Z","date_created":"2023-09-17T22:01:09Z","volume":621,"author":[{"orcid":"0000-0001-5227-4271","id":"40315C30-F248-11E8-B48F-1D18A9856A87","last_name":"Scarselli","first_name":"Davide","full_name":"Scarselli, Davide"},{"orcid":"0000-0002-0384-2022","id":"40770848-F248-11E8-B48F-1D18A9856A87","last_name":"Lopez Alonso","first_name":"Jose M","full_name":"Lopez Alonso, Jose M"},{"full_name":"Varshney, Atul","id":"2A2006B2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3072-5999","first_name":"Atul","last_name":"Varshney"},{"full_name":"Hof, Björn","last_name":"Hof","first_name":"Björn","orcid":"0000-0003-2057-2754","id":"3A374330-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://www.ista.ac.at/en/news/pumping-like-the-heart/"}]},"publication_status":"published","department":[{"_id":"BjHo"}],"publisher":"Springer Nature","year":"2023","acknowledgement":"We acknowledge the assistance of the Miba machine shop and the team of the ISTA-HPC cluster. We thank M. Quadrio for the discussions. The work was supported by the Simons Foundation (grant no. 662960) and by the Austrian Science Fund (grant no. I4188-N30), within Deutsche Forschungsgemeinschaft research unit FOR 2688.","pmid":1,"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"ScienComp"}],"language":[{"iso":"eng"}],"doi":"10.1038/s41586-023-06399-5","quality_controlled":"1","project":[{"name":"Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental Studies on Transitional and Turbulent Flows","_id":"238598C6-32DE-11EA-91FC-C7463DDC885E","grant_number":"662960"},{"call_identifier":"FWF","name":"Instabilities in pulsating pipe flow of Newtonian and complex fluids","_id":"238B8092-32DE-11EA-91FC-C7463DDC885E","grant_number":"I04188"}],"external_id":{"pmid":["37673988"]},"month":"09","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]}},{"related_material":{"link":[{"url":"https://github.com/madvorak/grammars/tree/publish","relation":"software"}]},"author":[{"full_name":"Dvorak, Martin","orcid":"0000-0001-5293-214X","id":"40ED02A8-C8B4-11E9-A9C0-453BE6697425","last_name":"Dvorak","first_name":"Martin"},{"full_name":"Blanchette, Jasmin","first_name":"Jasmin","last_name":"Blanchette"}],"volume":268,"date_updated":"2023-09-25T11:04:29Z","date_created":"2023-06-05T07:29:05Z","acknowledgement":"Jasmin Blanchette: This research has received funding from the Netherlands Organization\r\nfor Scientific Research (NWO) under the Vidi program (project No. 016.Vidi.189.037, Lean Forward).\r\n__\r\nWe thank Vladimir Kolmogorov for making this collaboration possible. We\r\nthank Václav Končický for discussing ideas about the Kleene star construction. We thank Patrick Johnson, Floris van Doorn, and Damiano Testa for their small yet very valuable contributions to our code. We thank Eric Wieser for simplifying one of our proofs. We thank Mark Summerfield for suggesting textual improvements. We thank the anonymous reviewers for very helpful comments. Finally, we thank the Lean community for helping us with various technical issues and answering many questions. ","year":"2023","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","department":[{"_id":"GradSch"},{"_id":"VlKo"}],"publication_status":"published","file_date_updated":"2023-08-07T11:55:43Z","article_number":"15","doi":"10.4230/LIPIcs.ITP.2023.15","conference":{"name":"ITP: International Conference on Interactive Theorem Proving","location":"Bialystok, Poland","start_date":"2023-07-31","end_date":"2023-08-04"},"language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2302.06420"]},"quality_controlled":"1","publication_identifier":{"isbn":["9783959772846"],"eissn":["1868-8969"]},"month":"07","file":[{"relation":"main_file","file_id":"13982","checksum":"773a0197f05b67feaa6cb1e17ec3642d","success":1,"date_updated":"2023-08-07T11:55:43Z","date_created":"2023-08-07T11:55:43Z","access_level":"open_access","file_name":"2023_LIPIcS_Dvorak.pdf","content_type":"application/pdf","file_size":715976,"creator":"dernst"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13120","intvolume":" 268","status":"public","title":"Closure properties of general grammars - formally verified","ddc":["000"],"abstract":[{"text":"We formalized general (i.e., type-0) grammars using the Lean 3 proof assistant. We defined basic notions of rewrite rules and of words derived by a grammar, and used grammars to show closure of the class of type-0 languages under four operations: union, reversal, concatenation, and the Kleene star. The literature mostly focuses on Turing machine arguments, which are possibly more difficult to formalize. For the Kleene star, we could not follow the literature and came up with our own grammar-based construction.","lang":"eng"}],"type":"conference","alternative_title":["LIPIcs"],"date_published":"2023-07-27T00:00:00Z","citation":{"ama":"Dvorak M, Blanchette J. Closure properties of general grammars - formally verified. In: 14th International Conference on Interactive Theorem Proving. Vol 268. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.ITP.2023.15","apa":"Dvorak, M., & Blanchette, J. (2023). Closure properties of general grammars - formally verified. In 14th International Conference on Interactive Theorem Proving (Vol. 268). Bialystok, Poland: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.ITP.2023.15","ieee":"M. Dvorak and J. Blanchette, “Closure properties of general grammars - formally verified,” in 14th International Conference on Interactive Theorem Proving, Bialystok, Poland, 2023, vol. 268.","ista":"Dvorak M, Blanchette J. 2023. Closure properties of general grammars - formally verified. 14th International Conference on Interactive Theorem Proving. ITP: International Conference on Interactive Theorem Proving, LIPIcs, vol. 268, 15.","short":"M. Dvorak, J. Blanchette, in:, 14th International Conference on Interactive Theorem Proving, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","mla":"Dvorak, Martin, and Jasmin Blanchette. “Closure Properties of General Grammars - Formally Verified.” 14th International Conference on Interactive Theorem Proving, vol. 268, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.ITP.2023.15.","chicago":"Dvorak, Martin, and Jasmin Blanchette. “Closure Properties of General Grammars - Formally Verified.” In 14th International Conference on Interactive Theorem Proving, Vol. 268. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.ITP.2023.15."},"publication":"14th International Conference on Interactive Theorem Proving","article_processing_charge":"No","has_accepted_license":"1","day":"27","scopus_import":"1"},{"issue":"6","abstract":[{"text":"Bundling crossings is a strategy which can enhance the readability\r\nof graph drawings. In this paper we consider good drawings, i.e., we require that\r\nany two edges have at most one common point which can be a common vertex or a\r\ncrossing. Our main result is that there is a polynomial-time algorithm to compute an\r\n8-approximation of the bundled crossing number of a good drawing with no toothed\r\nhole. In general the number of toothed holes has to be added to the 8-approximation.\r\nIn the special case of circular drawings the approximation factor is 8, this improves\r\nupon the 10-approximation of Fink et al. [14]. Our approach also works with the same\r\napproximation factor for families of pseudosegments, i.e., curves intersecting at most\r\nonce. We also show how to compute a 9/2-approximation when the intersection graph of\r\nthe pseudosegments is bipartite and has no toothed hole.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"date_created":"2023-08-07T08:00:48Z","date_updated":"2023-08-07T08:00:48Z","success":1,"checksum":"9c30d2b8e324cc1c904f2aeec92013a3","file_id":"13979","relation":"main_file","creator":"dernst","file_size":865774,"content_type":"application/pdf","file_name":"2023_JourGraphAlgorithms_Arroyo.pdf","access_level":"open_access"}],"_id":"13969","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 27","ddc":["510"],"title":"Approximating the bundled crossing number","status":"public","has_accepted_license":"1","article_processing_charge":"Yes","day":"01","scopus_import":"1","date_published":"2023-07-01T00:00:00Z","citation":{"chicago":"Arroyo Guevara, Alan M, and Stefan Felsner. “Approximating the Bundled Crossing Number.” Journal of Graph Algorithms and Applications. Brown University, 2023. https://doi.org/10.7155/jgaa.00629.","short":"A.M. Arroyo Guevara, S. Felsner, Journal of Graph Algorithms and Applications 27 (2023) 433–457.","mla":"Arroyo Guevara, Alan M., and Stefan Felsner. “Approximating the Bundled Crossing Number.” Journal of Graph Algorithms and Applications, vol. 27, no. 6, Brown University, 2023, pp. 433–57, doi:10.7155/jgaa.00629.","ieee":"A. M. Arroyo Guevara and S. Felsner, “Approximating the bundled crossing number,” Journal of Graph Algorithms and Applications, vol. 27, no. 6. Brown University, pp. 433–457, 2023.","apa":"Arroyo Guevara, A. M., & Felsner, S. (2023). Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. Brown University. https://doi.org/10.7155/jgaa.00629","ista":"Arroyo Guevara AM, Felsner S. 2023. Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. 27(6), 433–457.","ama":"Arroyo Guevara AM, Felsner S. Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. 2023;27(6):433-457. doi:10.7155/jgaa.00629"},"publication":"Journal of Graph Algorithms and Applications","page":"433-457","article_type":"original","ec_funded":1,"file_date_updated":"2023-08-07T08:00:48Z","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"11185"}]},"author":[{"full_name":"Arroyo Guevara, Alan M","last_name":"Arroyo Guevara","first_name":"Alan M","orcid":"0000-0003-2401-8670","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Felsner","first_name":"Stefan","full_name":"Felsner, Stefan"}],"volume":27,"date_created":"2023-08-06T22:01:11Z","date_updated":"2023-09-25T10:56:10Z","acknowledgement":"This work was initiated during the Workshop on Geometric Graphs in November 2019 in Strobl, Austria. We would like to thank Oswin Aichholzer, Fabian Klute, Man-Kwun Chiu, Martin Balko, Pavel Valtr for their avid discussions during the workshop. The first author has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement No 754411. The second author has been supported by the German Research Foundation DFG Project FE 340/12-1. An extended abstract of this paper has been published in the proceedings of WALCOM 2022 in the Springer LNCS series, vol. 13174, pages 383–395.","year":"2023","publisher":"Brown University","department":[{"_id":"UlWa"}],"publication_status":"published","publication_identifier":{"issn":["1526-1719"]},"month":"07","doi":"10.7155/jgaa.00629","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2109.14892"]},"oa":1,"project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"quality_controlled":"1"},{"month":"01","publication_identifier":{"isbn":["9781611977554"]},"conference":{"end_date":"2023-01-25","location":"Florence, Italy","start_date":"2023-01-22","name":"SODA: Symposium on Discrete Algorithms"},"doi":"10.1137/1.9781611977554.ch88","language":[{"iso":"eng"}],"oa":1,"external_id":{"arxiv":["2111.14759"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2111.14759"}],"quality_controlled":"1","author":[{"id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","last_name":"Anastos","first_name":"Michael","full_name":"Anastos, Michael"}],"date_updated":"2023-09-25T09:13:41Z","date_created":"2023-09-17T22:01:10Z","volume":2023,"year":"2023","publication_status":"published","department":[{"_id":"MaKw"}],"publisher":"Society for Industrial and Applied Mathematics","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2023-01-01T00:00:00Z","publication":"Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms","citation":{"ama":"Anastos M. Fast algorithms for solving the Hamilton cycle problem with high probability. In: Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. Vol 2023. Society for Industrial and Applied Mathematics; 2023:2286-2323. doi:10.1137/1.9781611977554.ch88","ieee":"M. Anastos, “Fast algorithms for solving the Hamilton cycle problem with high probability,” in Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, Florence, Italy, 2023, vol. 2023, pp. 2286–2323.","apa":"Anastos, M. (2023). Fast algorithms for solving the Hamilton cycle problem with high probability. In Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms (Vol. 2023, pp. 2286–2323). Florence, Italy: Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611977554.ch88","ista":"Anastos M. 2023. Fast algorithms for solving the Hamilton cycle problem with high probability. Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol. 2023, 2286–2323.","short":"M. Anastos, in:, Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2023, pp. 2286–2323.","mla":"Anastos, Michael. “Fast Algorithms for Solving the Hamilton Cycle Problem with High Probability.” Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, vol. 2023, Society for Industrial and Applied Mathematics, 2023, pp. 2286–323, doi:10.1137/1.9781611977554.ch88.","chicago":"Anastos, Michael. “Fast Algorithms for Solving the Hamilton Cycle Problem with High Probability.” In Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 2023:2286–2323. Society for Industrial and Applied Mathematics, 2023. https://doi.org/10.1137/1.9781611977554.ch88."},"page":"2286-2323","abstract":[{"lang":"eng","text":"We study the Hamilton cycle problem with input a random graph G ~ G(n,p) in two different settings. In the first one, G is given to us in the form of randomly ordered adjacency lists while in the second one, we are given the adjacency matrix of G. In each of the two settings we derive a deterministic algorithm that w.h.p. either finds a Hamilton cycle or returns a certificate that such a cycle does not exist for p = p(n) ≥ 0. The running times of our algorithms are O(n) and respectively, each being best possible in its own setting."}],"type":"conference","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14344","title":"Fast algorithms for solving the Hamilton cycle problem with high probability","status":"public","intvolume":" 2023"},{"volume":35,"date_created":"2023-03-05T23:01:06Z","date_updated":"2023-09-26T10:56:46Z","author":[{"first_name":"Barbara","last_name":"Schamberger","full_name":"Schamberger, Barbara"},{"first_name":"Ricardo","last_name":"Ziege","full_name":"Ziege, Ricardo"},{"first_name":"Karine","last_name":"Anselme","full_name":"Anselme, Karine"},{"full_name":"Ben Amar, Martine","last_name":"Ben Amar","first_name":"Martine"},{"full_name":"Bykowski, Michał","last_name":"Bykowski","first_name":"Michał"},{"last_name":"Castro","first_name":"André P.G.","full_name":"Castro, André P.G."},{"full_name":"Cipitria, Amaia","last_name":"Cipitria","first_name":"Amaia"},{"last_name":"Coles","first_name":"Rhoslyn A.","full_name":"Coles, Rhoslyn A."},{"last_name":"Dimova","first_name":"Rumiana","full_name":"Dimova, Rumiana"},{"last_name":"Eder","first_name":"Michaela","full_name":"Eder, Michaela"},{"last_name":"Ehrig","first_name":"Sebastian","full_name":"Ehrig, Sebastian"},{"full_name":"Escudero, Luis M.","first_name":"Luis M.","last_name":"Escudero"},{"full_name":"Evans, Myfanwy E.","last_name":"Evans","first_name":"Myfanwy E."},{"full_name":"Fernandes, Paulo R.","first_name":"Paulo R.","last_name":"Fernandes"},{"last_name":"Fratzl","first_name":"Peter","full_name":"Fratzl, Peter"},{"last_name":"Geris","first_name":"Liesbet","full_name":"Geris, Liesbet"},{"first_name":"Notburga","last_name":"Gierlinger","full_name":"Gierlinger, Notburga"},{"last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B"},{"last_name":"Iglič","first_name":"Aleš","full_name":"Iglič, Aleš"},{"first_name":"Jacob J.K.","last_name":"Kirkensgaard","full_name":"Kirkensgaard, Jacob J.K."},{"first_name":"Philip","last_name":"Kollmannsberger","full_name":"Kollmannsberger, Philip"},{"first_name":"Łucja","last_name":"Kowalewska","full_name":"Kowalewska, Łucja"},{"first_name":"Nicholas A.","last_name":"Kurniawan","full_name":"Kurniawan, Nicholas A."},{"first_name":"Ioannis","last_name":"Papantoniou","full_name":"Papantoniou, Ioannis"},{"first_name":"Laurent","last_name":"Pieuchot","full_name":"Pieuchot, Laurent"},{"full_name":"Pires, Tiago H.V.","first_name":"Tiago H.V.","last_name":"Pires"},{"full_name":"Renner, Lars D.","first_name":"Lars D.","last_name":"Renner"},{"first_name":"Andrew O.","last_name":"Sageman-Furnas","full_name":"Sageman-Furnas, Andrew O."},{"full_name":"Schröder-Turk, Gerd E.","first_name":"Gerd E.","last_name":"Schröder-Turk"},{"first_name":"Anupam","last_name":"Sengupta","full_name":"Sengupta, Anupam"},{"full_name":"Sharma, Vikas R.","last_name":"Sharma","first_name":"Vikas R."},{"last_name":"Tagua","first_name":"Antonio","full_name":"Tagua, Antonio"},{"last_name":"Tomba","first_name":"Caterina","full_name":"Tomba, Caterina"},{"full_name":"Trepat, Xavier","last_name":"Trepat","first_name":"Xavier"},{"last_name":"Waters","first_name":"Sarah L.","full_name":"Waters, Sarah L."},{"full_name":"Yeo, Edwina F.","last_name":"Yeo","first_name":"Edwina F."},{"full_name":"Roschger, Andreas","first_name":"Andreas","last_name":"Roschger"},{"full_name":"Bidan, Cécile M.","last_name":"Bidan","first_name":"Cécile M."},{"last_name":"Dunlop","first_name":"John W.C.","full_name":"Dunlop, John W.C."}],"publisher":"Wiley","department":[{"_id":"EdHa"}],"publication_status":"published","pmid":1,"year":"2023","acknowledgement":"B.S. and A.R. contributed equally to this work. A.P.G.C. and P.R.F. acknowledge the funding from Fundação para a Ciência e Tecnologia (Portugal), through IDMEC, under LAETA project UIDB/50022/2020. T.H.V.P. acknowledges the funding from Fundação para a Ciência e Tecnologia (Portugal), through Ph.D. Grant 2020.04417.BD. A.S. acknowledges that this work was partially supported by the ATTRACT Investigator Grant (no. A17/MS/11572821/MBRACE, to A.S.) from the Luxembourg National Research Fund. The author thanks Gerardo Ceada for his help in the graphical representations. N.A.K. acknowledges support from the European Research Council (grant 851960) and the Gravitation Program “Materials Driven Regeneration,” funded by the Netherlands Organization for Scientific Research (024.003.013). M.B.A. acknowledges support from the French National Research Agency (grant ANR-201-8-CE1-3-0008 for the project “Epimorph”). G.E.S.T. acknowledges funding by the Australian Research Council through project DP200102593. A.C. acknowledges the funding from the Deutsche Forschungsgemeinschaft (DFG) Emmy Noether Grant CI 203/-2 1, the Spanish Ministry of Science and Innovation (PID2021-123013O-BI00) and the IKERBASQUE Basque Foundation for Science.","file_date_updated":"2023-09-26T10:51:56Z","article_number":"2206110","language":[{"iso":"eng"}],"doi":"10.1002/adma.202206110","isi":1,"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000941068900001"],"pmid":["36461812"]},"oa":1,"publication_identifier":{"eissn":["1521-4095"],"issn":["0935-9648"]},"month":"03","file":[{"access_level":"open_access","file_name":"2023_AdvancedMaterials_Schamberger.pdf","file_size":2898063,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"14373","checksum":"5c04d68130e97a0ecd1ca27fbc15a246","success":1,"date_created":"2023-09-26T10:51:56Z","date_updated":"2023-09-26T10:51:56Z"}],"oa_version":"Published Version","intvolume":" 35","ddc":["570"],"title":"Curvature in biological systems: Its quantification, emergence, and implications across the scales","status":"public","_id":"12710","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"13","abstract":[{"lang":"eng","text":"Surface curvature both emerges from, and influences the behavior of, living objects at length scales ranging from cell membranes to single cells to tissues and organs. The relevance of surface curvature in biology is supported by numerous experimental and theoretical investigations in recent years. In this review, first, a brief introduction to the key ideas of surface curvature in the context of biological systems is given and the challenges that arise when measuring surface curvature are discussed. Giving an overview of the emergence of curvature in biological systems, its significance at different length scales becomes apparent. On the other hand, summarizing current findings also shows that both single cells and entire cell sheets, tissues or organisms respond to curvature by modulating their shape and their migration behavior. Finally, the interplay between the distribution of morphogens or micro-organisms and the emergence of curvature across length scales is addressed with examples demonstrating these key mechanistic principles of morphogenesis. Overall, this review highlights that curved interfaces are not merely a passive by-product of the chemical, biological, and mechanical processes but that curvature acts also as a signal that co-determines these processes."}],"type":"journal_article","date_published":"2023-03-29T00:00:00Z","article_type":"review","citation":{"ama":"Schamberger B, Ziege R, Anselme K, et al. Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. 2023;35(13). doi:10.1002/adma.202206110","ista":"Schamberger B, Ziege R, Anselme K, Ben Amar M, Bykowski M, Castro APG, Cipitria A, Coles RA, Dimova R, Eder M, Ehrig S, Escudero LM, Evans ME, Fernandes PR, Fratzl P, Geris L, Gierlinger N, Hannezo EB, Iglič A, Kirkensgaard JJK, Kollmannsberger P, Kowalewska Ł, Kurniawan NA, Papantoniou I, Pieuchot L, Pires THV, Renner LD, Sageman-Furnas AO, Schröder-Turk GE, Sengupta A, Sharma VR, Tagua A, Tomba C, Trepat X, Waters SL, Yeo EF, Roschger A, Bidan CM, Dunlop JWC. 2023. Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. 35(13), 2206110.","apa":"Schamberger, B., Ziege, R., Anselme, K., Ben Amar, M., Bykowski, M., Castro, A. P. G., … Dunlop, J. W. C. (2023). Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202206110","ieee":"B. Schamberger et al., “Curvature in biological systems: Its quantification, emergence, and implications across the scales,” Advanced Materials, vol. 35, no. 13. Wiley, 2023.","mla":"Schamberger, Barbara, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” Advanced Materials, vol. 35, no. 13, 2206110, Wiley, 2023, doi:10.1002/adma.202206110.","short":"B. Schamberger, R. Ziege, K. Anselme, M. Ben Amar, M. Bykowski, A.P.G. Castro, A. Cipitria, R.A. Coles, R. Dimova, M. Eder, S. Ehrig, L.M. Escudero, M.E. Evans, P.R. Fernandes, P. Fratzl, L. Geris, N. Gierlinger, E.B. Hannezo, A. Iglič, J.J.K. Kirkensgaard, P. Kollmannsberger, Ł. Kowalewska, N.A. Kurniawan, I. Papantoniou, L. Pieuchot, T.H.V. Pires, L.D. Renner, A.O. Sageman-Furnas, G.E. Schröder-Turk, A. Sengupta, V.R. Sharma, A. Tagua, C. Tomba, X. Trepat, S.L. Waters, E.F. Yeo, A. Roschger, C.M. Bidan, J.W.C. Dunlop, Advanced Materials 35 (2023).","chicago":"Schamberger, Barbara, Ricardo Ziege, Karine Anselme, Martine Ben Amar, Michał Bykowski, André P.G. Castro, Amaia Cipitria, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” Advanced Materials. Wiley, 2023. https://doi.org/10.1002/adma.202206110."},"publication":"Advanced Materials","article_processing_charge":"No","has_accepted_license":"1","day":"29","scopus_import":"1"},{"publication_identifier":{"eissn":["1095-9203"]},"month":"09","main_file_link":[{"url":"https://doi.org/10.26434/chemrxiv-2023-gq2h0","open_access":"1"}],"oa":1,"quality_controlled":"1","doi":"10.1126/science.adh9059","language":[{"iso":"eng"}],"acknowledgement":"We acknowledge funding from the European Union’s Horizon 2020 Research and Innovation Program [European Research Council grants 820008 (Ra.K.) and 101045223 (A.P.) and Marie Skłodowska-Curie grants 812868 (J.G.) and 101022777 (T.-P.R.)], the Academy of Finland [Center of Excellence Programme LIBER grant 346107 (A.P.), Flagship Programme PREIN grant 320165 (A.P.), and Postdoctoral Researcher grant 340103 (T.-P.R.)], Zuckerman STEM Leadership Program Fellowship (J.R.C.), President’s PhD Scholarship (M.O.), and the EPSRC [Established Career Fellowship grant EP/R00188X/1 (M.J.F.)].","year":"2023","publisher":"American Association for the Advancement of Science","department":[{"_id":"RaKl"}],"publication_status":"published","author":[{"last_name":"Gemen","first_name":"Julius","full_name":"Gemen, Julius"},{"full_name":"Church, Jonathan R.","first_name":"Jonathan R.","last_name":"Church"},{"full_name":"Ruoko, Tero-Petri","first_name":"Tero-Petri","last_name":"Ruoko"},{"last_name":"Durandin","first_name":"Nikita","full_name":"Durandin, Nikita"},{"first_name":"Michał J.","last_name":"Białek","full_name":"Białek, Michał J."},{"full_name":"Weissenfels, Maren","last_name":"Weissenfels","first_name":"Maren"},{"last_name":"Feller","first_name":"Moran","full_name":"Feller, Moran"},{"full_name":"Kazes, Miri","last_name":"Kazes","first_name":"Miri"},{"full_name":"Borin, Veniamin A.","last_name":"Borin","first_name":"Veniamin A."},{"last_name":"Odaybat","first_name":"Magdalena","full_name":"Odaybat, Magdalena"},{"last_name":"Kalepu","first_name":"Rishir","full_name":"Kalepu, Rishir"},{"full_name":"Diskin-Posner, Yael","first_name":"Yael","last_name":"Diskin-Posner"},{"first_name":"Dan","last_name":"Oron","full_name":"Oron, Dan"},{"last_name":"Fuchter","first_name":"Matthew J.","full_name":"Fuchter, Matthew J."},{"full_name":"Priimagi, Arri","first_name":"Arri","last_name":"Priimagi"},{"last_name":"Schapiro","first_name":"Igor","full_name":"Schapiro, Igor"},{"full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","first_name":"Rafal"}],"volume":381,"date_created":"2023-08-01T08:26:15Z","date_updated":"2023-10-03T08:11:26Z","scopus_import":"1","article_processing_charge":"No","day":"22","citation":{"ieee":"J. Gemen et al., “Disequilibrating azoarenes by visible-light sensitization under confinement,” Science, vol. 381, no. 6664. American Association for the Advancement of Science, pp. 1357–1363, 2023.","apa":"Gemen, J., Church, J. R., Ruoko, T.-P., Durandin, N., Białek, M. J., Weissenfels, M., … Klajn, R. (2023). Disequilibrating azoarenes by visible-light sensitization under confinement. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.adh9059","ista":"Gemen J, Church JR, Ruoko T-P, Durandin N, Białek MJ, Weissenfels M, Feller M, Kazes M, Borin VA, Odaybat M, Kalepu R, Diskin-Posner Y, Oron D, Fuchter MJ, Priimagi A, Schapiro I, Klajn R. 2023. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 381(6664), 1357–1363.","ama":"Gemen J, Church JR, Ruoko T-P, et al. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 2023;381(6664):1357-1363. doi:10.1126/science.adh9059","chicago":"Gemen, Julius, Jonathan R. Church, Tero-Petri Ruoko, Nikita Durandin, Michał J. Białek, Maren Weissenfels, Moran Feller, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” Science. American Association for the Advancement of Science, 2023. https://doi.org/10.1126/science.adh9059.","short":"J. Gemen, J.R. Church, T.-P. Ruoko, N. Durandin, M.J. Białek, M. Weissenfels, M. Feller, M. Kazes, V.A. Borin, M. Odaybat, R. Kalepu, Y. Diskin-Posner, D. Oron, M.J. Fuchter, A. Priimagi, I. Schapiro, R. Klajn, Science 381 (2023) 1357–1363.","mla":"Gemen, Julius, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” Science, vol. 381, no. 6664, American Association for the Advancement of Science, 2023, pp. 1357–63, doi:10.1126/science.adh9059."},"publication":"Science","page":"1357-1363","article_type":"original","date_published":"2023-09-22T00:00:00Z","type":"journal_article","issue":"6664","abstract":[{"lang":"eng","text":"Photoisomerization of azobenzenes from their stable E isomer to the metastable Z state is the basis of numerous applications of these molecules. However, this reaction typically requires ultraviolet light, which limits applicability. In this study, we introduce disequilibration by sensitization under confinement (DESC), a supramolecular approach to induce the E-to-Z isomerization by using light of a desired color, including red. DESC relies on a combination of a macrocyclic host and a photosensitizer, which act together to selectively bind and sensitize E-azobenzenes for isomerization. The Z isomer lacks strong affinity for and is expelled from the host, which can then convert additional E-azobenzenes to the Z state. In this way, the host–photosensitizer complex converts photon energy into chemical energy in the form of out-of-equilibrium photostationary states, including ones that cannot be accessed through direct photoexcitation."}],"_id":"13340","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 381","title":"Disequilibrating azoarenes by visible-light sensitization under confinement","status":"public","oa_version":"Preprint"},{"type":"journal_article","issue":"7","abstract":[{"lang":"eng","text":"The elasticity of disordered and polydisperse polymer networks is a fundamental problem of soft matter physics that is still open. Here, we self-assemble polymer networks via simulations of a mixture of bivalent and tri- or tetravalent patchy particles, which result in an exponential strand length distribution analogous to that of experimental randomly cross-linked systems. After assembly, the network connectivity and topology are frozen and the resulting system is characterized. We find that the fractal structure of the network depends on the number density at which the assembly has been carried out, but that systems with the same mean valence and same assembly density have the same structural properties. Moreover, we compute the long-time limit of the mean-squared displacement, also known as the (squared) localization length, of the cross-links and of the middle monomers of the strands, showing that the dynamics of long strands is well described by the tube model. Finally, we find a relation connecting these two localization lengths at high density and connect the cross-link localization length to the shear modulus of the system."}],"intvolume":" 158","title":"Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks","status":"public","_id":"12705","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"21","article_type":"original","citation":{"ama":"Sorichetti V, Ninarello A, Ruiz-Franco J, et al. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. 2023;158(7). doi:10.1063/5.0134271","ista":"Sorichetti V, Ninarello A, Ruiz-Franco J, Hugouvieux V, Zaccarelli E, Micheletti C, Kob W, Rovigatti L. 2023. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. 158(7), 074905.","apa":"Sorichetti, V., Ninarello, A., Ruiz-Franco, J., Hugouvieux, V., Zaccarelli, E., Micheletti, C., … Rovigatti, L. (2023). Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/5.0134271","ieee":"V. Sorichetti et al., “Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks,” Journal of Chemical Physics, vol. 158, no. 7. American Institute of Physics, 2023.","mla":"Sorichetti, Valerio, et al. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” Journal of Chemical Physics, vol. 158, no. 7, 074905, American Institute of Physics, 2023, doi:10.1063/5.0134271.","short":"V. Sorichetti, A. Ninarello, J. Ruiz-Franco, V. Hugouvieux, E. Zaccarelli, C. Micheletti, W. Kob, L. Rovigatti, Journal of Chemical Physics 158 (2023).","chicago":"Sorichetti, Valerio, Andrea Ninarello, José Ruiz-Franco, Virginie Hugouvieux, Emanuela Zaccarelli, Cristian Micheletti, Walter Kob, and Lorenzo Rovigatti. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” Journal of Chemical Physics. American Institute of Physics, 2023. https://doi.org/10.1063/5.0134271."},"publication":"Journal of Chemical Physics","date_published":"2023-02-21T00:00:00Z","article_number":"074905","department":[{"_id":"AnSa"}],"publisher":"American Institute of Physics","publication_status":"published","pmid":1,"acknowledgement":"We thank Michael Lang for helpful discussions. We acknowledge financial support from the European Research Council (ERC Consolidator Grant No. 681597, MIMIC) and from LabEx NUMEV (Grant No. ANR-10-LABX-20) funded by the “Investissements d’Avenir” French Government program, managed by the French National Research Agency (ANR). W.K. is a senior member of the Institut Universitaire de France.","year":"2023","volume":158,"date_updated":"2023-10-03T11:31:51Z","date_created":"2023-03-05T23:01:05Z","author":[{"last_name":"Sorichetti","first_name":"Valerio","orcid":"0000-0002-9645-6576","id":"ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b","full_name":"Sorichetti, Valerio"},{"last_name":"Ninarello","first_name":"Andrea","full_name":"Ninarello, Andrea"},{"full_name":"Ruiz-Franco, José","first_name":"José","last_name":"Ruiz-Franco"},{"last_name":"Hugouvieux","first_name":"Virginie","full_name":"Hugouvieux, Virginie"},{"full_name":"Zaccarelli, Emanuela","first_name":"Emanuela","last_name":"Zaccarelli"},{"first_name":"Cristian","last_name":"Micheletti","full_name":"Micheletti, Cristian"},{"full_name":"Kob, Walter","last_name":"Kob","first_name":"Walter"},{"first_name":"Lorenzo","last_name":"Rovigatti","full_name":"Rovigatti, Lorenzo"}],"publication_identifier":{"eissn":["1089-7690"],"issn":["0021-9606"]},"month":"02","isi":1,"quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2211.04810","open_access":"1"}],"oa":1,"external_id":{"isi":["000936943800002"],"pmid":["36813705"],"arxiv":["2211.04810"]},"language":[{"iso":"eng"}],"doi":"10.1063/5.0134271"},{"publication_identifier":{"eissn":["1572-8102"]},"month":"03","doi":"10.1007/s10703-023-00411-4","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s10703-023-00411-4"}],"oa":1,"external_id":{"isi":["000946174300001"]},"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"},{"grant_number":"ICT15-003","_id":"25892FC0-B435-11E9-9278-68D0E5697425","name":"Efficient Algorithms for Computer Aided Verification"}],"isi":1,"quality_controlled":"1","ec_funded":1,"related_material":{"record":[{"id":"8272","status":"public","relation":"earlier_version"}]},"author":[{"last_name":"Chatterjee","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu"},{"full_name":"Katoen, Joost P","last_name":"Katoen","first_name":"Joost P","id":"4524F760-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Mohr, Stefanie","first_name":"Stefanie","last_name":"Mohr"},{"last_name":"Weininger","first_name":"Maximilian","full_name":"Weininger, Maximilian"},{"full_name":"Winkler, Tobias","first_name":"Tobias","last_name":"Winkler"}],"date_created":"2023-03-19T23:00:59Z","date_updated":"2023-10-03T11:36:13Z","acknowledgement":"Tobias Winkler and Joost-Pieter Katoen are supported by the DFG RTG 2236 UnRAVeL and the innovation programme under the Marie Skłodowska-Curie grant agreement No. 101008233 (Mission). Krishnendu Chatterjee is supported by the ERC CoG 863818 (ForM-SMArt) and the Vienna Science and Technology Fund (WWTF) Project ICT15-003. Maximilian Weininger is supported by the DFG projects 383882557 Statistical Unbounded Verification (SUV) and 427755713 Group-By Objectives in Probabilistic Verification (GOPro). Stefanie Mohr is supported by the DFG RTG 2428 CONVEY. Open Access funding enabled and organized by Projekt DEAL.","year":"2023","publisher":"Springer Nature","department":[{"_id":"KrCh"}],"publication_status":"epub_ahead","article_processing_charge":"No","day":"08","scopus_import":"1","date_published":"2023-03-08T00:00:00Z","citation":{"mla":"Chatterjee, Krishnendu, et al. “Stochastic Games with Lexicographic Objectives.” Formal Methods in System Design, Springer Nature, 2023, doi:10.1007/s10703-023-00411-4.","short":"K. Chatterjee, J.P. Katoen, S. Mohr, M. Weininger, T. Winkler, Formal Methods in System Design (2023).","chicago":"Chatterjee, Krishnendu, Joost P Katoen, Stefanie Mohr, Maximilian Weininger, and Tobias Winkler. “Stochastic Games with Lexicographic Objectives.” Formal Methods in System Design. Springer Nature, 2023. https://doi.org/10.1007/s10703-023-00411-4.","ama":"Chatterjee K, Katoen JP, Mohr S, Weininger M, Winkler T. Stochastic games with lexicographic objectives. Formal Methods in System Design. 2023. doi:10.1007/s10703-023-00411-4","ista":"Chatterjee K, Katoen JP, Mohr S, Weininger M, Winkler T. 2023. Stochastic games with lexicographic objectives. Formal Methods in System Design.","apa":"Chatterjee, K., Katoen, J. P., Mohr, S., Weininger, M., & Winkler, T. (2023). Stochastic games with lexicographic objectives. Formal Methods in System Design. Springer Nature. https://doi.org/10.1007/s10703-023-00411-4","ieee":"K. Chatterjee, J. P. Katoen, S. Mohr, M. Weininger, and T. Winkler, “Stochastic games with lexicographic objectives,” Formal Methods in System Design. Springer Nature, 2023."},"publication":"Formal Methods in System Design","article_type":"original","abstract":[{"lang":"eng","text":"We study turn-based stochastic zero-sum games with lexicographic preferences over objectives. Stochastic games are standard models in control, verification, and synthesis of stochastic reactive systems that exhibit both randomness as well as controllable and adversarial non-determinism. Lexicographic order allows one to consider multiple objectives with a strict preference order. To the best of our knowledge, stochastic games with lexicographic objectives have not been studied before. For a mixture of reachability and safety objectives, we show that deterministic lexicographically optimal strategies exist and memory is only required to remember the already satisfied and violated objectives. For a constant number of objectives, we show that the relevant decision problem is in NP∩coNP, matching the current known bound for single objectives; and in general the decision problem is PSPACE-hard and can be solved in NEXPTIME∩coNEXPTIME. We present an algorithm that computes the lexicographically optimal strategies via a reduction to the computation of optimal strategies in a sequence of single-objectives games. For omega-regular objectives, we restrict our analysis to one-player games, also known as Markov decision processes. We show that lexicographically optimal strategies exist and need either randomization or finite memory. We present an algorithm that solves the relevant decision problem in polynomial time. We have implemented our algorithms and report experimental results on various case studies."}],"type":"journal_article","oa_version":"Published Version","_id":"12738","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Stochastic games with lexicographic objectives","ddc":["000"],"status":"public"},{"ddc":["570"],"status":"public","title":"Source data for the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\"","publisher":"Zenodo","department":[{"_id":"EdHa"}],"_id":"14279","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","date_created":"2023-09-06T08:39:25Z","date_updated":"2023-10-03T11:42:58Z","oa_version":"Published Version","author":[{"last_name":"Ucar","first_name":"Mehmet C","orcid":"0000-0003-0506-4217","id":"50B2A802-6007-11E9-A42B-EB23E6697425","full_name":"Ucar, Mehmet C"}],"related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"14274"}]},"type":"research_data_reference","abstract":[{"lang":"eng","text":"The zip file includes source data used in the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\", as well as a representative Jupyter notebook to reproduce the main figures. Please see the preprint on bioRxiv and the DOI link there to access the final published version. Note the title change between the preprint and the published manuscript.\r\nA sample script for particle-based simulations of collective chemotaxis by self-generated gradients is also included (see Self-generated_chemotaxis_sample_script.ipynb) to generate exemplary cell trajectories. A detailed description of the simulation setup is provided in the supplementary information of the manuscipt."}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"main_file_link":[{"url":"https://doi.org/10.5281/zenodo.8133960","open_access":"1"}],"citation":{"mla":"Ucar, Mehmet C. Source Data for the Manuscript “CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.” Zenodo, 2023, doi:10.5281/ZENODO.8133960.","short":"M.C. Ucar, (2023).","chicago":"Ucar, Mehmet C. “Source Data for the Manuscript ‘CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.’” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8133960.","ama":"Ucar MC. Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” 2023. doi:10.5281/ZENODO.8133960","ista":"Ucar MC. 2023. Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration’, Zenodo, 10.5281/ZENODO.8133960.","ieee":"M. C. Ucar, “Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.’” Zenodo, 2023.","apa":"Ucar, M. C. (2023). Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” Zenodo. https://doi.org/10.5281/ZENODO.8133960"},"date_published":"2023-07-11T00:00:00Z","doi":"10.5281/ZENODO.8133960","month":"07","day":"11","has_accepted_license":"1","article_processing_charge":"No"},{"day":"01","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","scopus_import":"1","date_published":"2023-05-01T00:00:00Z","article_type":"original","page":"946-1034","publication":"Communications on Pure and Applied Mathematics","citation":{"ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices,” Communications on Pure and Applied Mathematics, vol. 76, no. 5. Wiley, pp. 946–1034, 2023.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. Wiley. https://doi.org/10.1002/cpa.22028","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 76(5), 946–1034.","ama":"Cipolloni G, Erdös L, Schröder DJ. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 2023;76(5):946-1034. doi:10.1002/cpa.22028","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” Communications on Pure and Applied Mathematics. Wiley, 2023. https://doi.org/10.1002/cpa.22028.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Communications on Pure and Applied Mathematics 76 (2023) 946–1034.","mla":"Cipolloni, Giorgio, et al. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” Communications on Pure and Applied Mathematics, vol. 76, no. 5, Wiley, 2023, pp. 946–1034, doi:10.1002/cpa.22028."},"abstract":[{"text":"We consider large non-Hermitian random matrices X with complex, independent, identically distributed centred entries and show that the linear statistics of their eigenvalues are asymptotically Gaussian for test functions having 2+ϵ derivatives. Previously this result was known only for a few special cases; either the test functions were required to be analytic [72], or the distribution of the matrix elements needed to be Gaussian [73], or at least match the Gaussian up to the first four moments [82, 56]. We find the exact dependence of the limiting variance on the fourth cumulant that was not known before. The proof relies on two novel ingredients: (i) a local law for a product of two resolvents of the Hermitisation of X with different spectral parameters and (ii) a coupling of several weakly dependent Dyson Brownian motions. These methods are also the key inputs for our analogous results on the linear eigenvalue statistics of real matrices X that are presented in the companion paper [32]. ","lang":"eng"}],"issue":"5","type":"journal_article","file":[{"relation":"main_file","file_id":"14388","checksum":"8346bc2642afb4ccb7f38979f41df5d9","success":1,"date_updated":"2023-10-04T09:21:48Z","date_created":"2023-10-04T09:21:48Z","access_level":"open_access","file_name":"2023_CommPureMathematics_Cipolloni.pdf","content_type":"application/pdf","file_size":803440,"creator":"dernst"}],"oa_version":"Published Version","ddc":["510"],"status":"public","title":"Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices","intvolume":" 76","_id":"10405","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"05","publication_identifier":{"eissn":["1097-0312"],"issn":["0010-3640"]},"language":[{"iso":"eng"}],"doi":"10.1002/cpa.22028","quality_controlled":"1","isi":1,"project":[{"call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804"},{"name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"external_id":{"isi":["000724652500001"],"arxiv":["1912.04100"]},"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","file_date_updated":"2023-10-04T09:21:48Z","ec_funded":1,"date_updated":"2023-10-04T09:22:55Z","date_created":"2021-12-05T23:01:41Z","volume":76,"author":[{"full_name":"Cipolloni, Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4901-7992","first_name":"Giorgio","last_name":"Cipolloni"},{"first_name":"László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","full_name":"Erdös, László"},{"full_name":"Schröder, Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856","first_name":"Dominik J","last_name":"Schröder"}],"publication_status":"published","department":[{"_id":"LaEr"}],"publisher":"Wiley","acknowledgement":"L.E. would like to thank Nathanaël Berestycki and D.S.would like to thank Nina Holden for valuable discussions on the Gaussian freefield.G.C. and L.E. are partially supported by ERC Advanced Grant No. 338804.G.C. received funding from the European Union’s Horizon 2020 research and in-novation programme under the Marie Skłodowska-Curie Grant Agreement No.665385. D.S. is supported by Dr. Max Rössler, the Walter Haefner Foundation, and the ETH Zürich Foundation.","year":"2023"},{"oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2022_DynamicGamesApplic_Graham.pdf","content_type":"application/pdf","file_size":1890512,"creator":"dernst","relation":"main_file","file_id":"10781","checksum":"cd53b07e96f9030ddb348f305e5b58c7","success":1,"date_updated":"2022-02-21T08:54:17Z","date_created":"2022-02-21T08:54:17Z"}],"_id":"10770","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Where do mistakes lead? A survey of games with incompetent players","ddc":["000"],"intvolume":" 13","abstract":[{"text":"Mathematical models often aim to describe a complicated mechanism in a cohesive and simple manner. However, reaching perfect balance between being simple enough or overly simplistic is a challenging task. Frequently, game-theoretic models have an underlying assumption that players, whenever they choose to execute a specific action, do so perfectly. In fact, it is rare that action execution perfectly coincides with intentions of individuals, giving rise to behavioural mistakes. The concept of incompetence of players was suggested to address this issue in game-theoretic settings. Under the assumption of incompetence, players have non-zero probabilities of executing a different strategy from the one they chose, leading to stochastic outcomes of the interactions. In this article, we survey results related to the concept of incompetence in classic as well as evolutionary game theory and provide several new results. We also suggest future extensions of the model and argue why it is important to take into account behavioural mistakes when analysing interactions among players in both economic and biological settings.","lang":"eng"}],"type":"journal_article","date_published":"2023-03-01T00:00:00Z","publication":"Dynamic Games and Applications","citation":{"ama":"Graham T, Kleshnina M, Filar JA. Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. 2023;13:231-264. doi:10.1007/s13235-022-00425-3","ista":"Graham T, Kleshnina M, Filar JA. 2023. Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. 13, 231–264.","apa":"Graham, T., Kleshnina, M., & Filar, J. A. (2023). Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. Springer Nature. https://doi.org/10.1007/s13235-022-00425-3","ieee":"T. Graham, M. Kleshnina, and J. A. Filar, “Where do mistakes lead? A survey of games with incompetent players,” Dynamic Games and Applications, vol. 13. Springer Nature, pp. 231–264, 2023.","mla":"Graham, Thomas, et al. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” Dynamic Games and Applications, vol. 13, Springer Nature, 2023, pp. 231–64, doi:10.1007/s13235-022-00425-3.","short":"T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications 13 (2023) 231–264.","chicago":"Graham, Thomas, Maria Kleshnina, and Jerzy A. Filar. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” Dynamic Games and Applications. Springer Nature, 2023. https://doi.org/10.1007/s13235-022-00425-3."},"article_type":"original","page":"231-264","day":"01","article_processing_charge":"No","has_accepted_license":"1","scopus_import":"1","author":[{"full_name":"Graham, Thomas","first_name":"Thomas","last_name":"Graham"},{"first_name":"Maria","last_name":"Kleshnina","id":"4E21749C-F248-11E8-B48F-1D18A9856A87","full_name":"Kleshnina, Maria"},{"first_name":"Jerzy A.","last_name":"Filar","full_name":"Filar, Jerzy A."}],"date_updated":"2023-10-04T09:24:30Z","date_created":"2022-02-20T23:01:32Z","volume":13,"acknowledgement":"The authors would like to acknowledge stimulating email discussions with Dr Wayne Lobb of W.A. Lobb LLC on the topic of evolutionary games. We also thank Dr Thomas Taimre for his input to the material in Sect. 3.\r\nThe authors would like to acknowledge partial support from the Australian Research Council under the Discovery grant DP180101602 and support by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement #754411.","year":"2023","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"KrCh"}],"file_date_updated":"2022-02-21T08:54:17Z","ec_funded":1,"doi":"10.1007/s13235-022-00425-3","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000753777100001"]},"quality_controlled":"1","isi":1,"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"month":"03","publication_identifier":{"issn":["2153-0785"],"eissn":["2153-0793"]}},{"date_updated":"2023-10-04T09:19:12Z","date_created":"2021-10-17T22:01:17Z","volume":58,"author":[{"full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","last_name":"Dello Schiavo","first_name":"Lorenzo"}],"publication_status":"published","department":[{"_id":"JaMa"}],"publisher":"Springer Nature","year":"2023","acknowledgement":"The author is grateful to Professors Sergio Albeverio and Andreas Eberle, and to Dr. Kohei Suzuki, for fruitful conversations on the subject of the present work, and for respectively pointing out the references [1, 13], and [3, 20]. Finally, he is especially grateful to an anonymous Reviewer for their very careful reading and their suggestions which improved the readability of the paper.","file_date_updated":"2023-10-04T09:18:59Z","ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.1007/s11118-021-09951-y","quality_controlled":"1","isi":1,"project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"},{"name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504"},{"name":"Optimal Transport and Stochastic Dynamics","call_identifier":"H2020","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2003.01366"],"isi":["000704213400001"]},"month":"03","publication_identifier":{"issn":["0926-2601"],"eissn":["1572-929X"]},"oa_version":"Published Version","file":[{"creator":"dernst","file_size":806391,"content_type":"application/pdf","file_name":"2023_PotentialAnalysis_DelloSchiavo.pdf","access_level":"open_access","date_updated":"2023-10-04T09:18:59Z","date_created":"2023-10-04T09:18:59Z","success":1,"checksum":"625526482be300ca7281c91c30d41725","file_id":"14387","relation":"main_file"}],"ddc":["510"],"status":"public","title":"Ergodic decomposition of Dirichlet forms via direct integrals and applications","intvolume":" 58","_id":"10145","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"We study direct integrals of quadratic and Dirichlet forms. We show that each quasi-regular Dirichlet space over a probability space admits a unique representation as a direct integral of irreducible Dirichlet spaces, quasi-regular for the same underlying topology. The same holds for each quasi-regular strongly local Dirichlet space over a metrizable Luzin σ-finite Radon measure space, and admitting carré du champ operator. In this case, the representation is only projectively unique."}],"type":"journal_article","date_published":"2023-03-01T00:00:00Z","article_type":"original","page":"573-615","publication":"Potential Analysis","citation":{"ama":"Dello Schiavo L. Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. 2023;58:573-615. doi:10.1007/s11118-021-09951-y","ista":"Dello Schiavo L. 2023. Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. 58, 573–615.","ieee":"L. Dello Schiavo, “Ergodic decomposition of Dirichlet forms via direct integrals and applications,” Potential Analysis, vol. 58. Springer Nature, pp. 573–615, 2023.","apa":"Dello Schiavo, L. (2023). Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. Springer Nature. https://doi.org/10.1007/s11118-021-09951-y","mla":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” Potential Analysis, vol. 58, Springer Nature, 2023, pp. 573–615, doi:10.1007/s11118-021-09951-y.","short":"L. Dello Schiavo, Potential Analysis 58 (2023) 573–615.","chicago":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” Potential Analysis. Springer Nature, 2023. https://doi.org/10.1007/s11118-021-09951-y."},"day":"01","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","scopus_import":"1"},{"abstract":[{"lang":"eng","text":"The study of RNAs has become one of the most influential research fields in contemporary biology and biomedicine. In the last few years, new sequencing technologies have produced an explosion of new and exciting discoveries in the field but have also given rise to many open questions. Defining these questions, together with old, long-standing gaps in our knowledge, is the spirit of this article. The breadth of topics within RNA biology research is vast, and every aspect of the biology of these molecules contains countless exciting open questions. Here, we asked 12 groups to discuss their most compelling question among some plant RNA biology topics. The following vignettes cover RNA alternative splicing; RNA dynamics; RNA translation; RNA structures; R-loops; epitranscriptomics; long non-coding RNAs; small RNA production and their functions in crops; small RNAs during gametogenesis and in cross-kingdom RNA interference; and RNA-directed DNA methylation. In each section, we will present the current state-of-the-art in plant RNA biology research before asking the questions that will surely motivate future discoveries in the field. We hope this article will spark a debate about the future perspective on RNA biology and provoke novel reflections in the reader."}],"issue":"6","type":"journal_article","oa_version":"Published Version","title":"Beyond transcription: compelling open questions in plant RNA biology","status":"public","intvolume":" 35","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12669","day":"01","article_processing_charge":"No","keyword":["Cell Biology","Plant Science"],"scopus_import":"1","date_published":"2023-06-01T00:00:00Z","article_type":"original","publication":"The Plant Cell","citation":{"ama":"Manavella PA, Godoy Herz MA, Kornblihtt AR, et al. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 2023;35(6). doi:10.1093/plcell/koac346","ista":"Manavella PA, Godoy Herz MA, Kornblihtt AR, Sorenson R, Sieburth LE, Nakaminami K, Seki M, Ding Y, Sun Q, Kang H, Ariel FD, Crespi M, Giudicatti AJ, Cai Q, Jin H, Feng X, Qi Y, Pikaard CS. 2023. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 35(6), koac346.","apa":"Manavella, P. A., Godoy Herz, M. A., Kornblihtt, A. R., Sorenson, R., Sieburth, L. E., Nakaminami, K., … Pikaard, C. S. (2023). Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koac346","ieee":"P. A. Manavella et al., “Beyond transcription: compelling open questions in plant RNA biology,” The Plant Cell, vol. 35, no. 6. Oxford University Press, 2023.","mla":"Manavella, Pablo A., et al. “Beyond Transcription: Compelling Open Questions in Plant RNA Biology.” The Plant Cell, vol. 35, no. 6, koac346, Oxford University Press, 2023, doi:10.1093/plcell/koac346.","short":"P.A. Manavella, M.A. Godoy Herz, A.R. Kornblihtt, R. Sorenson, L.E. Sieburth, K. Nakaminami, M. Seki, Y. Ding, Q. Sun, H. Kang, F.D. Ariel, M. Crespi, A.J. Giudicatti, Q. Cai, H. Jin, X. Feng, Y. Qi, C.S. Pikaard, The Plant Cell 35 (2023).","chicago":"Manavella, Pablo A, Micaela A Godoy Herz, Alberto R Kornblihtt, Reed Sorenson, Leslie E Sieburth, Kentaro Nakaminami, Motoaki Seki, et al. “Beyond Transcription: Compelling Open Questions in Plant RNA Biology.” The Plant Cell. Oxford University Press, 2023. https://doi.org/10.1093/plcell/koac346."},"extern":"1","article_number":"koac346","date_updated":"2023-10-04T09:48:43Z","date_created":"2023-02-23T09:14:59Z","volume":35,"author":[{"last_name":"Manavella","first_name":"Pablo A","full_name":"Manavella, Pablo A"},{"full_name":"Godoy Herz, Micaela A","first_name":"Micaela A","last_name":"Godoy Herz"},{"full_name":"Kornblihtt, Alberto R","last_name":"Kornblihtt","first_name":"Alberto R"},{"last_name":"Sorenson","first_name":"Reed","full_name":"Sorenson, Reed"},{"last_name":"Sieburth","first_name":"Leslie E","full_name":"Sieburth, Leslie E"},{"first_name":"Kentaro","last_name":"Nakaminami","full_name":"Nakaminami, Kentaro"},{"full_name":"Seki, Motoaki","first_name":"Motoaki","last_name":"Seki"},{"first_name":"Yiliang","last_name":"Ding","full_name":"Ding, Yiliang"},{"last_name":"Sun","first_name":"Qianwen","full_name":"Sun, Qianwen"},{"full_name":"Kang, Hunseung","last_name":"Kang","first_name":"Hunseung"},{"full_name":"Ariel, Federico D","first_name":"Federico D","last_name":"Ariel"},{"last_name":"Crespi","first_name":"Martin","full_name":"Crespi, Martin"},{"last_name":"Giudicatti","first_name":"Axel J","full_name":"Giudicatti, Axel J"},{"full_name":"Cai, Qiang","first_name":"Qiang","last_name":"Cai"},{"full_name":"Jin, Hailing","first_name":"Hailing","last_name":"Jin"},{"full_name":"Feng, Xiaoqi","first_name":"Xiaoqi","last_name":"Feng","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","orcid":"0000-0002-4008-1234"},{"first_name":"Yijun","last_name":"Qi","full_name":"Qi, Yijun"},{"first_name":"Craig S","last_name":"Pikaard","full_name":"Pikaard, Craig S"}],"publication_status":"published","publisher":"Oxford University Press","department":[{"_id":"XiFe"}],"year":"2023","pmid":1,"month":"06","publication_identifier":{"issn":["1040-4651"],"eissn":["1532-298X"]},"language":[{"iso":"eng"}],"doi":"10.1093/plcell/koac346","quality_controlled":"1","oa":1,"main_file_link":[{"url":"https://doi.org/10.1093/plcell/koac346","open_access":"1"}],"external_id":{"pmid":["36477566"]}},{"article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"01","scopus_import":"1","date_published":"2023-07-01T00:00:00Z","page":"1035-1055","article_type":"original","citation":{"short":"A. Liebenau, L. Mattos, W. Mendonca dos Santos, J. Skokan, Random Structures and Algorithms 62 (2023) 1035–1055.","mla":"Liebenau, Anita, et al. “Asymmetric Ramsey Properties of Random Graphs Involving Cliques and Cycles.” Random Structures and Algorithms, vol. 62, no. 4, Wiley, 2023, pp. 1035–55, doi:10.1002/rsa.21106.","chicago":"Liebenau, Anita, Letícia Mattos, Walner Mendonca dos Santos, and Jozef Skokan. “Asymmetric Ramsey Properties of Random Graphs Involving Cliques and Cycles.” Random Structures and Algorithms. Wiley, 2023. https://doi.org/10.1002/rsa.21106.","ama":"Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random Structures and Algorithms. 2023;62(4):1035-1055. doi:10.1002/rsa.21106","apa":"Liebenau, A., Mattos, L., Mendonca dos Santos, W., & Skokan, J. (2023). Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random Structures and Algorithms. Wiley. https://doi.org/10.1002/rsa.21106","ieee":"A. Liebenau, L. Mattos, W. Mendonca dos Santos, and J. Skokan, “Asymmetric Ramsey properties of random graphs involving cliques and cycles,” Random Structures and Algorithms, vol. 62, no. 4. Wiley, pp. 1035–1055, 2023.","ista":"Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. 2023. Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random Structures and Algorithms. 62(4), 1035–1055."},"publication":"Random Structures and Algorithms","issue":"4","abstract":[{"lang":"eng","text":"We say that (Formula presented.) if, in every edge coloring (Formula presented.), we can find either a 1-colored copy of (Formula presented.) or a 2-colored copy of (Formula presented.). The well-known states that the threshold for the property (Formula presented.) is equal to (Formula presented.), where (Formula presented.) is given by (Formula presented.) for any pair of graphs (Formula presented.) and (Formula presented.) with (Formula presented.). In this article, we show the 0-statement of the Kohayakawa–Kreuter conjecture for every pair of cycles and cliques. "}],"type":"journal_article","oa_version":"Published Version","file":[{"file_name":"2023_RandomStructureAlgorithms_Liebenau.pdf","access_level":"open_access","content_type":"application/pdf","file_size":1362334,"creator":"dernst","relation":"main_file","file_id":"14389","date_updated":"2023-10-04T09:37:26Z","date_created":"2023-10-04T09:37:26Z","checksum":"3a5969d0c512aef01c30f3dc81c6d59b","success":1}],"intvolume":" 62","title":"Asymmetric Ramsey properties of random graphs involving cliques and cycles","status":"public","ddc":["510"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11706","publication_identifier":{"eissn":["1098-2418"],"issn":["1042-9832"]},"month":"07","language":[{"iso":"eng"}],"doi":"10.1002/rsa.21106","quality_controlled":"1","isi":1,"external_id":{"isi":["000828530400001"]},"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"oa":1,"license":"https://creativecommons.org/licenses/by-nc/4.0/","file_date_updated":"2023-10-04T09:37:26Z","volume":62,"date_created":"2022-07-31T22:01:49Z","date_updated":"2023-10-04T09:38:45Z","author":[{"full_name":"Liebenau, Anita","first_name":"Anita","last_name":"Liebenau"},{"full_name":"Mattos, Letícia","first_name":"Letícia","last_name":"Mattos"},{"full_name":"Mendonca Dos Santos, Walner","id":"12c6bd4d-2cd0-11ec-a0da-e28f42f65ebd","first_name":"Walner","last_name":"Mendonca Dos Santos"},{"last_name":"Skokan","first_name":"Jozef","full_name":"Skokan, Jozef"}],"department":[{"_id":"MaKw"}],"publisher":"Wiley","publication_status":"published","acknowledgement":"This work was started at the thematic program GRAPHS@IMPA (January–March 2018), in Rio de Janeiro. We thank IMPA and the organisers for the hospitality and for providing a pleasant research environment. We thank Rob Morris for helpful discussions, and the anonymous referees for their careful reading and many helpful suggestions. Open Access funding enabled and organized by Projekt DEAL.\r\nA. Liebenau was supported by an ARC DECRA Fellowship Grant DE170100789. L. Mattos was supported by CAPES and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – The Berlin Mathematics Research Center MATH+ (EXC-2046/1, project ID: 390685689). W. Mendonça was supported by CAPES project 88882.332408/2010-01.","year":"2023"},{"date_created":"2023-03-05T23:01:05Z","date_updated":"2023-10-04T10:21:07Z","volume":29,"author":[{"first_name":"László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","full_name":"Erdös, László"},{"first_name":"Yuanyuan","last_name":"Xu","id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","orcid":"0000-0003-1559-1205","full_name":"Xu, Yuanyuan"}],"publication_status":"published","publisher":"Bernoulli Society for Mathematical Statistics and Probability","department":[{"_id":"LaEr"}],"year":"2023","ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.3150/22-BEJ1490","quality_controlled":"1","isi":1,"project":[{"call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"main_file_link":[{"url":"https://arxiv.org/abs/2112.12093","open_access":"1"}],"external_id":{"arxiv":["2112.12093 "],"isi":["000947270100008"]},"oa":1,"month":"05","publication_identifier":{"issn":["1350-7265"]},"oa_version":"Preprint","status":"public","title":"Small deviation estimates for the largest eigenvalue of Wigner matrices","intvolume":" 29","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12707","abstract":[{"lang":"eng","text":"We establish precise right-tail small deviation estimates for the largest eigenvalue of real symmetric and complex Hermitian matrices whose entries are independent random variables with uniformly bounded moments. The proof relies on a Green function comparison along a continuous interpolating matrix flow for a long time. Less precise estimates are also obtained in the left tail."}],"issue":"2","type":"journal_article","date_published":"2023-05-01T00:00:00Z","article_type":"original","page":"1063-1079","publication":"Bernoulli","citation":{"short":"L. Erdös, Y. Xu, Bernoulli 29 (2023) 1063–1079.","mla":"Erdös, László, and Yuanyuan Xu. “Small Deviation Estimates for the Largest Eigenvalue of Wigner Matrices.” Bernoulli, vol. 29, no. 2, Bernoulli Society for Mathematical Statistics and Probability, 2023, pp. 1063–79, doi:10.3150/22-BEJ1490.","chicago":"Erdös, László, and Yuanyuan Xu. “Small Deviation Estimates for the Largest Eigenvalue of Wigner Matrices.” Bernoulli. Bernoulli Society for Mathematical Statistics and Probability, 2023. https://doi.org/10.3150/22-BEJ1490.","ama":"Erdös L, Xu Y. Small deviation estimates for the largest eigenvalue of Wigner matrices. Bernoulli. 2023;29(2):1063-1079. doi:10.3150/22-BEJ1490","ieee":"L. Erdös and Y. Xu, “Small deviation estimates for the largest eigenvalue of Wigner matrices,” Bernoulli, vol. 29, no. 2. Bernoulli Society for Mathematical Statistics and Probability, pp. 1063–1079, 2023.","apa":"Erdös, L., & Xu, Y. (2023). Small deviation estimates for the largest eigenvalue of Wigner matrices. Bernoulli. Bernoulli Society for Mathematical Statistics and Probability. https://doi.org/10.3150/22-BEJ1490","ista":"Erdös L, Xu Y. 2023. Small deviation estimates for the largest eigenvalue of Wigner matrices. Bernoulli. 29(2), 1063–1079."},"day":"01","article_processing_charge":"No","scopus_import":"1"},{"doi":"10.1038/s41567-023-01977-w","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000964029300003"]},"quality_controlled":"1","isi":1,"project":[{"grant_number":"680037","_id":"B6FC0238-B512-11E9-945C-1524E6697425","name":"Coordination of Patterning And Growth In the Spinal Cord","call_identifier":"H2020"},{"_id":"bd7e737f-d553-11ed-ba76-d69ffb5ee3aa","grant_number":"101044579","name":"Mechanisms of tissue size regulation in spinal cord development"},{"grant_number":"F07802","_id":"059DF620-7A3F-11EA-A408-12923DDC885E","name":"Morphogen control of growth and pattern in the spinal cord"},{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"month":"07","publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"author":[{"full_name":"Bocanegra, Laura","id":"4896F754-F248-11E8-B48F-1D18A9856A87","last_name":"Bocanegra","first_name":"Laura"},{"id":"76250f9f-3a21-11eb-9a80-a6180a0d7958","first_name":"Amrita","last_name":"Singh","full_name":"Singh, Amrita"},{"last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B"},{"full_name":"Zagórski, Marcin P","orcid":"0000-0001-7896-7762","id":"343DA0DC-F248-11E8-B48F-1D18A9856A87","last_name":"Zagórski","first_name":"Marcin P"},{"orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","last_name":"Kicheva","first_name":"Anna","full_name":"Kicheva, Anna"}],"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"13081"}]},"date_updated":"2023-10-04T11:14:05Z","date_created":"2023-04-16T22:01:09Z","volume":19,"year":"2023","acknowledgement":"We thank S. Hippenmeyer for the reagents and C. P. Heisenberg, J. Briscoe and K. Page for comments on the manuscript. This work was supported by IST Austria; the European Research Council under Horizon 2020 research and innovation programme grant no. 680037 and Horizon Europe grant 101044579 (A.K.); Austrian Science Fund (FWF): F78 (Stem Cell Modulation) (A.K.); ISTFELLOW postdoctoral program (A.S.); Narodowe Centrum Nauki, Poland SONATA, 2017/26/D/NZ2/00454 (M.Z.); and the Polish National Agency for Academic Exchange (M.Z.).","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"EdHa"},{"_id":"AnKi"}],"file_date_updated":"2023-10-04T11:13:28Z","ec_funded":1,"date_published":"2023-07-01T00:00:00Z","publication":"Nature Physics","citation":{"chicago":"Bocanegra, Laura, Amrita Singh, Edouard B Hannezo, Marcin P Zagórski, and Anna Kicheva. “Cell Cycle Dynamics Control Fluidity of the Developing Mouse Neuroepithelium.” Nature Physics. Springer Nature, 2023. https://doi.org/10.1038/s41567-023-01977-w.","short":"L. Bocanegra, A. Singh, E.B. Hannezo, M.P. Zagórski, A. Kicheva, Nature Physics 19 (2023) 1050–1058.","mla":"Bocanegra, Laura, et al. “Cell Cycle Dynamics Control Fluidity of the Developing Mouse Neuroepithelium.” Nature Physics, vol. 19, Springer Nature, 2023, pp. 1050–58, doi:10.1038/s41567-023-01977-w.","ieee":"L. Bocanegra, A. Singh, E. B. Hannezo, M. P. Zagórski, and A. Kicheva, “Cell cycle dynamics control fluidity of the developing mouse neuroepithelium,” Nature Physics, vol. 19. Springer Nature, pp. 1050–1058, 2023.","apa":"Bocanegra, L., Singh, A., Hannezo, E. B., Zagórski, M. P., & Kicheva, A. (2023). Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-023-01977-w","ista":"Bocanegra L, Singh A, Hannezo EB, Zagórski MP, Kicheva A. 2023. Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. Nature Physics. 19, 1050–1058.","ama":"Bocanegra L, Singh A, Hannezo EB, Zagórski MP, Kicheva A. Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. Nature Physics. 2023;19:1050-1058. doi:10.1038/s41567-023-01977-w"},"article_type":"original","page":"1050-1058","day":"01","has_accepted_license":"1","article_processing_charge":"No","scopus_import":"1","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2023_NaturePhysics_Boncanegra.pdf","content_type":"application/pdf","file_size":5532285,"creator":"dernst","relation":"main_file","file_id":"14392","checksum":"858225a4205b74406e5045006cdd853f","success":1,"date_created":"2023-10-04T11:13:28Z","date_updated":"2023-10-04T11:13:28Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12837","status":"public","title":"Cell cycle dynamics control fluidity of the developing mouse neuroepithelium","ddc":["570"],"intvolume":" 19","abstract":[{"lang":"eng","text":"As developing tissues grow in size and undergo morphogenetic changes, their material properties may be altered. Such changes result from tension dynamics at cell contacts or cellular jamming. Yet, in many cases, the cellular mechanisms controlling the physical state of growing tissues are unclear. We found that at early developmental stages, the epithelium in the developing mouse spinal cord maintains both high junctional tension and high fluidity. This is achieved via a mechanism in which interkinetic nuclear movements generate cell area dynamics that drive extensive cell rearrangements. Over time, the cell proliferation rate declines, effectively solidifying the tissue. Thus, unlike well-studied jamming transitions, the solidification uncovered here resembles a glass transition that depends on the dynamical stresses generated by proliferation and differentiation. Our finding that the fluidity of developing epithelia is linked to interkinetic nuclear movements and the dynamics of growth is likely to be relevant to multiple developing tissues."}],"type":"journal_article"},{"abstract":[{"lang":"eng","text":"During development, tissues undergo changes in size and shape to form functional organs. Distinct cellular processes such as cell division and cell rearrangements underlie tissue morphogenesis. Yet how the distinct processes are controlled and coordinated, and how they contribute to morphogenesis is poorly understood. In our study, we addressed these questions using the developing mouse neural tube. This epithelial organ transforms from a flat epithelial sheet to an epithelial tube while increasing in size and undergoing morpho-gen-mediated patterning. The extent and mechanism of neural progenitor rearrangement within the developing mouse neuroepithelium is unknown. To investigate this, we per-formed high resolution lineage tracing analysis to quantify the extent of epithelial rear-rangement at different stages of neural tube development. We quantitatively described the relationship between apical cell size with cell cycle dependent interkinetic nuclear migra-tions (IKNM) and performed high cellular resolution live imaging of the neuroepithelium to study the dynamics of junctional remodeling. Furthermore, developed a vertex model of the neuroepithelium to investigate the quantitative contribution of cell proliferation, cell differentiation and mechanical properties to the epithelial rearrangement dynamics and validated the model predictions through functional experiments. Our analysis revealed that at early developmental stages, the apical cell area kinetics driven by IKNM induce high lev-els of cell rearrangements in a regime of high junctional tension and contractility. After E9.5, there is a sharp decline in the extent of cell rearrangements, suggesting that the epi-thelium transitions from a fluid-like to a solid-like state. We found that this transition is regulated by the growth rate of the tissue, rather than by changes in cell-cell adhesion and contractile forces. Overall, our study provides a quantitative description of the relationship between tissue growth, cell cycle dynamics, epithelia rearrangements and the emergent tissue material properties, and novel insights on how epithelial cell dynamics influences tissue morphogenesis."}],"type":"dissertation","alternative_title":["ISTA Thesis"],"file":[{"relation":"source_file","file_id":"13089","checksum":"74f3f89e59a0189bee53ebfad9c1b9af","date_updated":"2023-05-25T06:32:12Z","date_created":"2023-05-25T06:32:12Z","access_level":"closed","file_name":"Thesis_final_LauraBocanegra.docx","file_size":25615534,"content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","creator":"lbocaneg"},{"creator":"lbocaneg","content_type":"application/pdf","file_size":12386046,"access_level":"closed","file_name":"TotalFinal_Thesis_LauraBocanegraArx.pdf","embargo_to":"open_access","checksum":"c6cdef6323eacfb4b7a8af20f32eae97","date_updated":"2023-05-25T06:32:16Z","date_created":"2023-05-25T06:32:16Z","file_id":"13090","embargo":"2024-05-31","relation":"main_file"}],"oa_version":"Published Version","_id":"13081","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","ddc":["570"],"status":"public","title":"Epithelial dynamics during mouse neural tube development","article_processing_charge":"No","has_accepted_license":"1","day":"23","date_published":"2023-05-23T00:00:00Z","citation":{"short":"L. Bocanegra, Epithelial Dynamics during Mouse Neural Tube Development, Institute of Science and Technology Austria, 2023.","mla":"Bocanegra, Laura. Epithelial Dynamics during Mouse Neural Tube Development. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:13081.","chicago":"Bocanegra, Laura. “Epithelial Dynamics during Mouse Neural Tube Development.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:13081.","ama":"Bocanegra L. Epithelial dynamics during mouse neural tube development. 2023. doi:10.15479/at:ista:13081","apa":"Bocanegra, L. (2023). Epithelial dynamics during mouse neural tube development. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:13081","ieee":"L. Bocanegra, “Epithelial dynamics during mouse neural tube development,” Institute of Science and Technology Austria, 2023.","ista":"Bocanegra L. 2023. Epithelial dynamics during mouse neural tube development. Institute of Science and Technology Austria."},"page":"93","file_date_updated":"2023-05-25T06:32:16Z","related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"9349"},{"status":"public","relation":"part_of_dissertation","id":"12837"}]},"author":[{"last_name":"Bocanegra","first_name":"Laura","id":"4896F754-F248-11E8-B48F-1D18A9856A87","full_name":"Bocanegra, Laura"}],"date_updated":"2023-10-04T11:14:04Z","date_created":"2023-05-23T19:10:42Z","year":"2023","publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"AnKi"}],"publication_status":"published","publication_identifier":{"issn":["2663 - 337X"]},"month":"05","doi":"10.15479/at:ista:13081","language":[{"iso":"eng"}],"supervisor":[{"full_name":"Kicheva, Anna","first_name":"Anna","last_name":"Kicheva","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4509-4998"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"degree_awarded":"PhD","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"}},{"oa_version":"None","title":"Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish","status":"public","intvolume":" 30","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12863","abstract":[{"lang":"eng","text":"In the present study, essential and nonessential metal content and biomarker responses were investigated in the intestine of fish collected from the areas polluted by mining. Our objective was to determine metal and biomarker levels in tissue responsible for dietary intake, which is rarely studied in water pollution research. The study was conducted in the Bregalnica River, reference location, and in the Zletovska and Kriva Rivers (the Republic of North Macedonia), which are directly influenced by the active mines Zletovo and Toranica, respectively. Biological responses were analyzed in Vardar chub (Squalius vardarensis; Karaman, 1928), using for the first time intestinal cytosol as a potentially toxic cell fraction, since metal sensitivity is mostly associated with cytosol. Cytosolic metal levels were higher in fish under the influence of mining (Tl, Li, Cs, Mo, Sr, Cd, Rb, and Cu in the Zletovska River and Cr, Pb, and Se in the Kriva River compared to the Bregalnica River in both seasons). The same trend was evident for total proteins, biomarkers of general stress, and metallothioneins, biomarkers of metal exposure, indicating cellular disturbances in the intestine, the primary site of dietary metal uptake. The association of cytosolic Cu and Cd at all locations pointed to similar pathways and homeostasis of these metallothionein-binding metals. Comparison with other indicator tissues showed that metal concentrations were higher in the intestine of fish from mining-affected areas than in the liver and gills. In general, these results indicated the importance of dietary metal pathways, and cytosolic metal fraction in assessing pollution impacts in freshwater ecosystems."}],"type":"journal_article","date_published":"2023-05-01T00:00:00Z","article_type":"original","page":"63510-63521","publication":"Environmental Science and Pollution Research","citation":{"ama":"Filipović Marijić V, Krasnici N, Valić D, et al. Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish. Environmental Science and Pollution Research. 2023;30:63510-63521. doi:10.1007/s11356-023-26844-2","ista":"Filipović Marijić V, Krasnici N, Valić D, Kapetanović D, Vardić Smrzlić I, Jordanova M, Rebok K, Ramani S, Kostov V, Nastova R, Dragun Z. 2023. Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish. Environmental Science and Pollution Research. 30, 63510–63521.","ieee":"V. Filipović Marijić et al., “Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish,” Environmental Science and Pollution Research, vol. 30. Springer Nature, pp. 63510–63521, 2023.","apa":"Filipović Marijić, V., Krasnici, N., Valić, D., Kapetanović, D., Vardić Smrzlić, I., Jordanova, M., … Dragun, Z. (2023). Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish. Environmental Science and Pollution Research. Springer Nature. https://doi.org/10.1007/s11356-023-26844-2","mla":"Filipović Marijić, Vlatka, et al. “Pollution Impact on Metal and Biomarker Responses in Intestinal Cytosol of Freshwater Fish.” Environmental Science and Pollution Research, vol. 30, Springer Nature, 2023, pp. 63510–21, doi:10.1007/s11356-023-26844-2.","short":"V. Filipović Marijić, N. Krasnici, D. Valić, D. Kapetanović, I. Vardić Smrzlić, M. Jordanova, K. Rebok, S. Ramani, V. Kostov, R. Nastova, Z. Dragun, Environmental Science and Pollution Research 30 (2023) 63510–63521.","chicago":"Filipović Marijić, Vlatka, Nesrete Krasnici, Damir Valić, Damir Kapetanović, Irena Vardić Smrzlić, Maja Jordanova, Katerina Rebok, et al. “Pollution Impact on Metal and Biomarker Responses in Intestinal Cytosol of Freshwater Fish.” Environmental Science and Pollution Research. Springer Nature, 2023. https://doi.org/10.1007/s11356-023-26844-2."},"day":"01","article_processing_charge":"No","scopus_import":"1","date_created":"2023-04-23T22:01:03Z","date_updated":"2023-10-04T11:23:10Z","volume":30,"author":[{"last_name":"Filipović Marijić","first_name":"Vlatka","full_name":"Filipović Marijić, Vlatka"},{"first_name":"Nesrete","last_name":"Krasnici","id":"cb5852d4-287f-11ed-baf0-bc1dd2d5c745","full_name":"Krasnici, Nesrete"},{"last_name":"Valić","first_name":"Damir","full_name":"Valić, Damir"},{"full_name":"Kapetanović, Damir","first_name":"Damir","last_name":"Kapetanović"},{"full_name":"Vardić Smrzlić, Irena","last_name":"Vardić Smrzlić","first_name":"Irena"},{"full_name":"Jordanova, Maja","last_name":"Jordanova","first_name":"Maja"},{"first_name":"Katerina","last_name":"Rebok","full_name":"Rebok, Katerina"},{"last_name":"Ramani","first_name":"Sheriban","full_name":"Ramani, Sheriban"},{"full_name":"Kostov, Vasil","first_name":"Vasil","last_name":"Kostov"},{"full_name":"Nastova, Rodne","first_name":"Rodne","last_name":"Nastova"},{"first_name":"Zrinka","last_name":"Dragun","full_name":"Dragun, Zrinka"}],"publication_status":"published","department":[{"_id":"LifeSc"}],"publisher":"Springer Nature","year":"2023","acknowledgement":"The authors are grateful to Dr. Nevenka Mikac for the opportunity to perform metal measurements on HR ICP-MS. This research was funded by the Ministry of Science, Education and Sport of the Republic of Croatia (projects No. 098–0982934-2721 and 098–1782739-2749). The sampling was carried out as a part of two Croatian-Macedonian bilateral projects: “The assessment of availability and effects of metals on fish in the rivers under the impact of mining activities” and “Bacterial and parasitical communities of chub as indicators of the status of environment exposed to mining activities.”","pmid":1,"language":[{"iso":"eng"}],"doi":"10.1007/s11356-023-26844-2","quality_controlled":"1","isi":1,"external_id":{"pmid":["37055686"],"isi":["000970917900012"]},"month":"05","publication_identifier":{"eissn":["1614-7499"],"issn":["0944-1344"]}},{"language":[{"iso":"eng"}],"doi":"10.1002/adom.202202631","quality_controlled":"1","isi":1,"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2211.08755"}],"external_id":{"isi":["000963866700001"],"arxiv":["2211.08755"]},"month":"07","publication_identifier":{"eissn":["2195-1071"]},"date_created":"2023-04-16T22:01:09Z","date_updated":"2023-10-04T11:15:17Z","volume":11,"author":[{"full_name":"Khatoniar, Mandeep","first_name":"Mandeep","last_name":"Khatoniar"},{"full_name":"Yama, Nicholas","first_name":"Nicholas","last_name":"Yama"},{"first_name":"Areg","last_name":"Ghazaryan","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9666-3543","full_name":"Ghazaryan, Areg"},{"full_name":"Guddala, Sriram","first_name":"Sriram","last_name":"Guddala"},{"first_name":"Pouyan","last_name":"Ghaemi","full_name":"Ghaemi, Pouyan"},{"last_name":"Majumdar","first_name":"Kausik","full_name":"Majumdar, Kausik"},{"last_name":"Menon","first_name":"Vinod","full_name":"Menon, Vinod"}],"publication_status":"published","publisher":"Wiley","department":[{"_id":"MiLe"}],"year":"2023","acknowledgement":"The authors acknowledge insightful discussions with Prof. Wang Yao and graphics by Rezlind Bushati. M.K. and N.Y. acknowledge support from NSF grants NSF DMR-1709996 and NSF OMA 1936276. S.G. was supported by the Army Research Office Multidisciplinary University Research Initiative program (W911NF-17-1-0312) and V.M.M. by the Army Research Office grant (W911NF-22-1-0091). K.M acknowledges the SPARC program that supported his collaboration with the CUNY team. The authors acknowledge the Nanofabrication facility at the CUNY Advanced Science Research Center where the cavity devices were fabricated.","article_number":"2202631","date_published":"2023-07-04T00:00:00Z","article_type":"original","publication":"Advanced Optical Materials","citation":{"short":"M. Khatoniar, N. Yama, A. Ghazaryan, S. Guddala, P. Ghaemi, K. Majumdar, V. Menon, Advanced Optical Materials 11 (2023).","mla":"Khatoniar, Mandeep, et al. “Optical Manipulation of Layer–Valley Coherence via Strong Exciton–Photon Coupling in Microcavities.” Advanced Optical Materials, vol. 11, no. 13, 2202631, Wiley, 2023, doi:10.1002/adom.202202631.","chicago":"Khatoniar, Mandeep, Nicholas Yama, Areg Ghazaryan, Sriram Guddala, Pouyan Ghaemi, Kausik Majumdar, and Vinod Menon. “Optical Manipulation of Layer–Valley Coherence via Strong Exciton–Photon Coupling in Microcavities.” Advanced Optical Materials. Wiley, 2023. https://doi.org/10.1002/adom.202202631.","ama":"Khatoniar M, Yama N, Ghazaryan A, et al. Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities. Advanced Optical Materials. 2023;11(13). doi:10.1002/adom.202202631","apa":"Khatoniar, M., Yama, N., Ghazaryan, A., Guddala, S., Ghaemi, P., Majumdar, K., & Menon, V. (2023). Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities. Advanced Optical Materials. Wiley. https://doi.org/10.1002/adom.202202631","ieee":"M. Khatoniar et al., “Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities,” Advanced Optical Materials, vol. 11, no. 13. Wiley, 2023.","ista":"Khatoniar M, Yama N, Ghazaryan A, Guddala S, Ghaemi P, Majumdar K, Menon V. 2023. Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities. Advanced Optical Materials. 11(13), 2202631."},"day":"04","article_processing_charge":"No","scopus_import":"1","oa_version":"Preprint","title":"Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities","status":"public","intvolume":" 11","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12836","abstract":[{"lang":"eng","text":"Coherent control and manipulation of quantum degrees of freedom such as spins forms the basis of emerging quantum technologies. In this context, the robust valley degree of freedom and the associated valley pseudospin found in two-dimensional transition metal dichalcogenides is a highly attractive platform. Valley polarization and coherent superposition of valley states have been observed in these systems even up to room temperature. Control of valley coherence is an important building block for the implementation of valley qubit. Large magnetic fields or high-power lasers have been used in the past to demonstrate the control (initialization and rotation) of the valley coherent states. Here, the control of layer–valley coherence via strong coupling of valley excitons in bilayer WS2 to microcavity photons is demonstrated by exploiting the pseudomagnetic field arising in optical cavities owing to the transverse electric–transverse magnetic (TE–TM)mode splitting. The use of photonic structures to generate pseudomagnetic fields which can be used to manipulate exciton-polaritons presents an attractive approach to control optical responses without the need for large magnets or high-intensity optical pump powers."}],"issue":"13","type":"journal_article"},{"citation":{"ama":"Gladbach P, Kopfer E, Maas J, Portinale L. Homogenisation of dynamical optimal transport on periodic graphs. Calculus of Variations and Partial Differential Equations. 2023;62(5). doi:10.1007/s00526-023-02472-z","apa":"Gladbach, P., Kopfer, E., Maas, J., & Portinale, L. (2023). Homogenisation of dynamical optimal transport on periodic graphs. Calculus of Variations and Partial Differential Equations. Springer Nature. https://doi.org/10.1007/s00526-023-02472-z","ieee":"P. Gladbach, E. Kopfer, J. Maas, and L. Portinale, “Homogenisation of dynamical optimal transport on periodic graphs,” Calculus of Variations and Partial Differential Equations, vol. 62, no. 5. Springer Nature, 2023.","ista":"Gladbach P, Kopfer E, Maas J, Portinale L. 2023. Homogenisation of dynamical optimal transport on periodic graphs. Calculus of Variations and Partial Differential Equations. 62(5), 143.","short":"P. Gladbach, E. Kopfer, J. Maas, L. Portinale, Calculus of Variations and Partial Differential Equations 62 (2023).","mla":"Gladbach, Peter, et al. “Homogenisation of Dynamical Optimal Transport on Periodic Graphs.” Calculus of Variations and Partial Differential Equations, vol. 62, no. 5, 143, Springer Nature, 2023, doi:10.1007/s00526-023-02472-z.","chicago":"Gladbach, Peter, Eva Kopfer, Jan Maas, and Lorenzo Portinale. “Homogenisation of Dynamical Optimal Transport on Periodic Graphs.” Calculus of Variations and Partial Differential Equations. Springer Nature, 2023. https://doi.org/10.1007/s00526-023-02472-z."},"publication":"Calculus of Variations and Partial Differential Equations","article_type":"original","date_published":"2023-04-28T00:00:00Z","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","day":"28","_id":"12959","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 62","ddc":["510"],"status":"public","title":"Homogenisation of dynamical optimal transport on periodic graphs","oa_version":"Published Version","file":[{"creator":"dernst","content_type":"application/pdf","file_size":1240995,"access_level":"open_access","file_name":"2023_CalculusEquations_Gladbach.pdf","success":1,"checksum":"359bee38d94b7e0aa73925063cb8884d","date_created":"2023-10-04T11:34:10Z","date_updated":"2023-10-04T11:34:10Z","file_id":"14393","relation":"main_file"}],"type":"journal_article","issue":"5","abstract":[{"text":"This paper deals with the large-scale behaviour of dynamical optimal transport on Zd\r\n-periodic graphs with general lower semicontinuous and convex energy densities. Our main contribution is a homogenisation result that describes the effective behaviour of the discrete problems in terms of a continuous optimal transport problem. The effective energy density can be explicitly expressed in terms of a cell formula, which is a finite-dimensional convex programming problem that depends non-trivially on the local geometry of the discrete graph and the discrete energy density. Our homogenisation result is derived from a Γ\r\n-convergence result for action functionals on curves of measures, which we prove under very mild growth conditions on the energy density. We investigate the cell formula in several cases of interest, including finite-volume discretisations of the Wasserstein distance, where non-trivial limiting behaviour occurs.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2110.15321"],"isi":["000980588900001"]},"oa":1,"project":[{"call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics","_id":"256E75B8-B435-11E9-9278-68D0E5697425","grant_number":"716117"},{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"},{"name":"Dissipation and Dispersion in Nonlinear Partial Differential Equations","call_identifier":"FWF","_id":"260788DE-B435-11E9-9278-68D0E5697425"}],"isi":1,"quality_controlled":"1","doi":"10.1007/s00526-023-02472-z","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1432-0835"],"issn":["0944-2669"]},"month":"04","acknowledgement":"J.M. gratefully acknowledges support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 716117). J.M and L.P. also acknowledge support from the Austrian Science Fund (FWF), grants No F65 and W1245. E.K. gratefully acknowledges support by the German Research Foundation through the Hausdorff Center for Mathematics and the Collaborative Research Center 1060. P.G. is partially funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—350398276. We thank the anonymous reviewer for the careful reading and for useful suggestions. Open access funding provided by Austrian Science Fund (FWF).","year":"2023","department":[{"_id":"JaMa"}],"publisher":"Springer Nature","publication_status":"published","author":[{"last_name":"Gladbach","first_name":"Peter","full_name":"Gladbach, Peter"},{"full_name":"Kopfer, Eva","last_name":"Kopfer","first_name":"Eva"},{"id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","first_name":"Jan","last_name":"Maas","full_name":"Maas, Jan"},{"full_name":"Portinale, Lorenzo","first_name":"Lorenzo","last_name":"Portinale","id":"30AD2CBC-F248-11E8-B48F-1D18A9856A87"}],"volume":62,"date_created":"2023-05-14T22:01:00Z","date_updated":"2023-10-04T11:34:49Z","article_number":"143","ec_funded":1,"file_date_updated":"2023-10-04T11:34:10Z"},{"date_created":"2023-05-07T22:01:04Z","date_updated":"2023-10-04T11:29:22Z","volume":17,"author":[{"first_name":"Congcong","last_name":"Xing","full_name":"Xing, Congcong"},{"first_name":"Yu","last_name":"Zhang","full_name":"Zhang, Yu"},{"full_name":"Xiao, Ke","last_name":"Xiao","first_name":"Ke"},{"full_name":"Han, Xu","first_name":"Xu","last_name":"Han"},{"last_name":"Liu","first_name":"Yu","orcid":"0000-0001-7313-6740","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","full_name":"Liu, Yu"},{"full_name":"Nan, Bingfei","last_name":"Nan","first_name":"Bingfei"},{"last_name":"Ramon","first_name":"Maria Garcia","id":"1ffff7cd-ed76-11ed-8d5f-be5e7c364eb9","full_name":"Ramon, Maria Garcia"},{"full_name":"Lim, Khak Ho","first_name":"Khak Ho","last_name":"Lim"},{"full_name":"Li, Junshan","first_name":"Junshan","last_name":"Li"},{"full_name":"Arbiol, Jordi","first_name":"Jordi","last_name":"Arbiol"},{"full_name":"Poudel, Bed","first_name":"Bed","last_name":"Poudel"},{"full_name":"Nozariasbmarz, Amin","last_name":"Nozariasbmarz","first_name":"Amin"},{"last_name":"Li","first_name":"Wenjie","full_name":"Li, Wenjie"},{"full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","first_name":"Maria","last_name":"Ibáñez"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"publication_status":"published","publisher":"American Chemical Society","department":[{"_id":"MaIb"}],"year":"2023","acknowledgement":"The authors acknowledge support from the projects ENE2016-77798-C4-3-R and NANOGEN (PID2020-116093RB-C43) funded by MCIN/AEI/10.13039/501100011033/and by “ERDF A way of making Europe”, and by the “European Union”. K.X. and B.N. thank the China Scholarship Council (CSC) for scholarship support. The authors acknowledge funding from Generalitat de Catalunya 2017 SGR 327 and 2017 SGR 1246. ICN2 is supported by the Severo Ochoa program from the Spanish MCIN/AEI (Grant No.: CEX2021-001214-S). IREC and ICN2 are funded by the CERCA Programme/Generalitat de Catalunya. J.L. acknowledges support from the Natural Science Foundation of Sichuan province (2022NSFSC1229). Part of the present work was performed in the frameworks of Universitat de Barcelona Nanoscience Ph.D. program and Universitat Autònoma de Barcelona Materials Science Ph.D. program. Y.L. acknowledges funding from the National Natural Science Foundation of China (Grant No. 22209034) and the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province (Grants No. 2022LCX002). K.H.L. acknowledges the financial support of the National Natural Science Foundation of China (Grant No. 22208293).","pmid":1,"language":[{"iso":"eng"}],"doi":"10.1021/acsnano.3c00495","quality_controlled":"1","isi":1,"external_id":{"isi":["000976063200001"],"pmid":["37071412"]},"month":"05","publication_identifier":{"issn":["1936-0851"],"eissn":["1936-086X"]},"oa_version":"None","title":"Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites","status":"public","intvolume":" 17","_id":"12915","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Cu2–xS and Cu2–xSe have recently been reported as promising thermoelectric (TE) materials for medium-temperature applications. In contrast, Cu2–xTe, another member of the copper chalcogenide family, typically exhibits low Seebeck coefficients that limit its potential to achieve a superior thermoelectric figure of merit, zT, particularly in the low-temperature range where this material could be effective. To address this, we investigated the TE performance of Cu1.5–xTe–Cu2Se nanocomposites by consolidating surface-engineered Cu1.5Te nanocrystals. This surface engineering strategy allows for precise adjustment of Cu/Te ratios and results in a reversible phase transition at around 600 K in Cu1.5–xTe–Cu2Se nanocomposites, as systematically confirmed by in situ high-temperature X-ray diffraction combined with differential scanning calorimetry analysis. The phase transition leads to a conversion from metallic-like to semiconducting-like TE properties. Additionally, a layer of Cu2Se generated around Cu1.5–xTe nanoparticles effectively inhibits Cu1.5–xTe grain growth, minimizing thermal conductivity and decreasing hole concentration. These properties indicate that copper telluride based compounds have a promising thermoelectric potential, translated into a high dimensionless zT of 1.3 at 560 K.","lang":"eng"}],"issue":"9","type":"journal_article","date_published":"2023-05-09T00:00:00Z","article_type":"original","page":"8442-8452","publication":"ACS Nano","citation":{"ama":"Xing C, Zhang Y, Xiao K, et al. Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. 2023;17(9):8442-8452. doi:10.1021/acsnano.3c00495","ieee":"C. Xing et al., “Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites,” ACS Nano, vol. 17, no. 9. American Chemical Society, pp. 8442–8452, 2023.","apa":"Xing, C., Zhang, Y., Xiao, K., Han, X., Liu, Y., Nan, B., … Cabot, A. (2023). Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.3c00495","ista":"Xing C, Zhang Y, Xiao K, Han X, Liu Y, Nan B, Ramon MG, Lim KH, Li J, Arbiol J, Poudel B, Nozariasbmarz A, Li W, Ibáñez M, Cabot A. 2023. Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. 17(9), 8442–8452.","short":"C. Xing, Y. Zhang, K. Xiao, X. Han, Y. Liu, B. Nan, M.G. Ramon, K.H. Lim, J. Li, J. Arbiol, B. Poudel, A. Nozariasbmarz, W. Li, M. Ibáñez, A. Cabot, ACS Nano 17 (2023) 8442–8452.","mla":"Xing, Congcong, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se Nanocomposites.” ACS Nano, vol. 17, no. 9, American Chemical Society, 2023, pp. 8442–52, doi:10.1021/acsnano.3c00495.","chicago":"Xing, Congcong, Yu Zhang, Ke Xiao, Xu Han, Yu Liu, Bingfei Nan, Maria Garcia Ramon, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se Nanocomposites.” ACS Nano. American Chemical Society, 2023. https://doi.org/10.1021/acsnano.3c00495."},"day":"09","article_processing_charge":"No","scopus_import":"1"},{"month":"09","publication_identifier":{"issn":["1363-755X"],"eissn":["1467-7687"]},"language":[{"iso":"eng"}],"doi":"10.1111/desc.13395","quality_controlled":"1","external_id":{"pmid":["37101383"]},"article_number":"e13395","date_updated":"2023-10-04T11:37:33Z","date_created":"2023-05-14T22:01:00Z","volume":26,"author":[{"full_name":"Wagner, Bernhard","first_name":"Bernhard","last_name":"Wagner"},{"first_name":"Vedrana","last_name":"Šlipogor","full_name":"Šlipogor, Vedrana"},{"full_name":"Oh, Jinook","last_name":"Oh","first_name":"Jinook","orcid":"0000-0001-7425-2372","id":"403169A4-080F-11EA-9993-BF3F3DDC885E"},{"full_name":"Varga, Marion","last_name":"Varga","first_name":"Marion"},{"full_name":"Hoeschele, Marisa","last_name":"Hoeschele","first_name":"Marisa"}],"publication_status":"published","publisher":"Wiley","department":[{"_id":"SyCr"}],"year":"2023","acknowledgement":"We thank Prof. Dr. Thomas Bugnyar for supporting the study and financing the marmoset laboratory, and Alexandra Bohmann and the animal keeping team for their care. Vedrana Šlipogor was funded by University of South Bohemia postdoctoral fellowship.","pmid":1,"day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2023-09-01T00:00:00Z","article_type":"original","publication":"Developmental Science","citation":{"short":"B. Wagner, V. Šlipogor, J. Oh, M. Varga, M. Hoeschele, Developmental Science 26 (2023).","mla":"Wagner, Bernhard, et al. “A Comparison between Common Marmosets (Callithrix Jacchus) and Human Infants Sheds Light on Traits Proposed to Be at the Root of Human Octave Equivalence.” Developmental Science, vol. 26, no. 5, e13395, Wiley, 2023, doi:10.1111/desc.13395.","chicago":"Wagner, Bernhard, Vedrana Šlipogor, Jinook Oh, Marion Varga, and Marisa Hoeschele. “A Comparison between Common Marmosets (Callithrix Jacchus) and Human Infants Sheds Light on Traits Proposed to Be at the Root of Human Octave Equivalence.” Developmental Science. Wiley, 2023. https://doi.org/10.1111/desc.13395.","ama":"Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence. Developmental Science. 2023;26(5). doi:10.1111/desc.13395","apa":"Wagner, B., Šlipogor, V., Oh, J., Varga, M., & Hoeschele, M. (2023). A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence. Developmental Science. Wiley. https://doi.org/10.1111/desc.13395","ieee":"B. Wagner, V. Šlipogor, J. Oh, M. Varga, and M. Hoeschele, “A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence,” Developmental Science, vol. 26, no. 5. Wiley, 2023.","ista":"Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. 2023. A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence. Developmental Science. 26(5), e13395."},"abstract":[{"lang":"eng","text":"Two notes separated by a doubling in frequency sound similar to humans. This “octave equivalence” is critical to perception and production of music and speech and occurs early in human development. Because it also occurs cross-culturally, a biological basis of octave equivalence has been hypothesized. Members of our team previousy suggested four human traits are at the root of this phenomenon: (1) vocal learning, (2) clear octave information in vocal harmonics, (3) differing vocal ranges, and (4) vocalizing together. Using cross-species studies, we can test how relevant these respective traits are, while controlling for enculturation effects and addressing questions of phylogeny. Common marmosets possess forms of three of the four traits, lacking differing vocal ranges. We tested 11 common marmosets by adapting an established head-turning paradigm, creating a parallel test to an important infant study. Unlike human infants, marmosets responded similarly to tones shifted by an octave or other intervals. Because previous studies with the same head-turning paradigm produced differential results to discernable acoustic stimuli in common marmosets, our results suggest that marmosets do not perceive octave equivalence. Our work suggests differing vocal ranges between adults and children and men and women and the way they are used in singing together may be critical to the development of octave equivalence."}],"issue":"5","type":"journal_article","oa_version":"None","status":"public","title":"A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence","intvolume":" 26","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12961"},{"scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"short":"J. De Simoi, V. Kaloshin, M. Leguil, Inventiones Mathematicae 233 (2023) 829–901.","mla":"De Simoi, Jacopo, et al. “Marked Length Spectral Determination of Analytic Chaotic Billiards with Axial Symmetries.” Inventiones Mathematicae, vol. 233, Springer Nature, 2023, pp. 829–901, doi:10.1007/s00222-023-01191-8.","chicago":"De Simoi, Jacopo, Vadim Kaloshin, and Martin Leguil. “Marked Length Spectral Determination of Analytic Chaotic Billiards with Axial Symmetries.” Inventiones Mathematicae. Springer Nature, 2023. https://doi.org/10.1007/s00222-023-01191-8.","ama":"De Simoi J, Kaloshin V, Leguil M. Marked Length Spectral determination of analytic chaotic billiards with axial symmetries. Inventiones Mathematicae. 2023;233:829-901. doi:10.1007/s00222-023-01191-8","apa":"De Simoi, J., Kaloshin, V., & Leguil, M. (2023). Marked Length Spectral determination of analytic chaotic billiards with axial symmetries. Inventiones Mathematicae. Springer Nature. https://doi.org/10.1007/s00222-023-01191-8","ieee":"J. De Simoi, V. Kaloshin, and M. Leguil, “Marked Length Spectral determination of analytic chaotic billiards with axial symmetries,” Inventiones Mathematicae, vol. 233. Springer Nature, pp. 829–901, 2023.","ista":"De Simoi J, Kaloshin V, Leguil M. 2023. Marked Length Spectral determination of analytic chaotic billiards with axial symmetries. Inventiones Mathematicae. 233, 829–901."},"publication":"Inventiones Mathematicae","page":"829-901","article_type":"original","date_published":"2023-08-01T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"We consider billiards obtained by removing from the plane finitely many strictly convex analytic obstacles satisfying the non-eclipse condition. The restriction of the dynamics to the set of non-escaping orbits is conjugated to a subshift, which provides a natural labeling of periodic orbits. We show that under suitable symmetry and genericity assumptions, the Marked Length Spectrum determines the geometry of the billiard table."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12877","intvolume":" 233","status":"public","title":"Marked Length Spectral determination of analytic chaotic billiards with axial symmetries","oa_version":"Preprint","publication_identifier":{"issn":["0020-9910"],"eissn":["1432-1297"]},"month":"08","external_id":{"arxiv":["1905.00890"],"isi":["000978887600001"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1905.00890"}],"oa":1,"project":[{"grant_number":"885707","_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A","call_identifier":"H2020","name":"Spectral rigidity and integrability for billiards and geodesic flows"}],"isi":1,"quality_controlled":"1","doi":"10.1007/s00222-023-01191-8","language":[{"iso":"eng"}],"ec_funded":1,"acknowledgement":"J.D.S. and M.L. have been partially supported by the NSERC Discovery grant, reference number 502617-2017. M.L. was also supported by the ERC project 692925 NUHGD of Sylvain Crovisier, by the ANR AAPG 2021 PRC CoSyDy: Conformally symplectic dynamics, beyond symplectic dynamics (ANR-CE40-0014), and by the ANR JCJC PADAWAN: Parabolic dynamics, bifurcations and wandering domains (ANR-21-CE40-0012). V.K. acknowledges partial support of the NSF grant DMS-1402164 and ERC Grant # 885707.","year":"2023","publisher":"Springer Nature","department":[{"_id":"VaKa"}],"publication_status":"published","author":[{"first_name":"Jacopo","last_name":"De Simoi","full_name":"De Simoi, Jacopo"},{"full_name":"Kaloshin, Vadim","last_name":"Kaloshin","first_name":"Vadim","orcid":"0000-0002-6051-2628","id":"FE553552-CDE8-11E9-B324-C0EBE5697425"},{"full_name":"Leguil, Martin","first_name":"Martin","last_name":"Leguil"}],"volume":233,"date_updated":"2023-10-04T11:25:37Z","date_created":"2023-04-30T22:01:05Z"},{"type":"journal_article","abstract":[{"lang":"eng","text":"Statistics of natural scenes are not uniform - their structure varies dramatically from ground to sky. It remains unknown whether these non-uniformities are reflected in the large-scale organization of the early visual system and what benefits such adaptations would confer. Here, by relying on the efficient coding hypothesis, we predict that changes in the structure of receptive fields across visual space increase the efficiency of sensory coding. We show experimentally that, in agreement with our predictions, receptive fields of retinal ganglion cells change their shape along the dorsoventral retinal axis, with a marked surround asymmetry at the visual horizon. Our work demonstrates that, according to principles of efficient coding, the panoramic structure of natural scenes is exploited by the retina across space and cell-types."}],"_id":"12349","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Panoramic visual statistics shape retina-wide organization of receptive fields","ddc":["570"],"status":"public","intvolume":" 26","oa_version":"Published Version","file":[{"relation":"main_file","file_id":"14395","checksum":"a33d91e398e548f34003170e10988368","success":1,"date_updated":"2023-10-04T11:40:51Z","date_created":"2023-10-04T11:40:51Z","access_level":"open_access","file_name":"2023_NatureNeuroscience_Gupta.pdf","file_size":6144866,"content_type":"application/pdf","creator":"dernst"}],"scopus_import":"1","day":"01","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","publication":"Nature Neuroscience","citation":{"short":"D. Gupta, W.F. Mlynarski, A.L. Sumser, O. Symonova, J. Svaton, M.A. Jösch, Nature Neuroscience 26 (2023) 606–614.","mla":"Gupta, Divyansh, et al. “Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields.” Nature Neuroscience, vol. 26, Springer Nature, 2023, pp. 606–14, doi:10.1038/s41593-023-01280-0.","chicago":"Gupta, Divyansh, Wiktor F Mlynarski, Anton L Sumser, Olga Symonova, Jan Svaton, and Maximilian A Jösch. “Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields.” Nature Neuroscience. Springer Nature, 2023. https://doi.org/10.1038/s41593-023-01280-0.","ama":"Gupta D, Mlynarski WF, Sumser AL, Symonova O, Svaton J, Jösch MA. Panoramic visual statistics shape retina-wide organization of receptive fields. Nature Neuroscience. 2023;26:606-614. doi:10.1038/s41593-023-01280-0","apa":"Gupta, D., Mlynarski, W. F., Sumser, A. L., Symonova, O., Svaton, J., & Jösch, M. A. (2023). Panoramic visual statistics shape retina-wide organization of receptive fields. Nature Neuroscience. Springer Nature. https://doi.org/10.1038/s41593-023-01280-0","ieee":"D. Gupta, W. F. Mlynarski, A. L. Sumser, O. Symonova, J. Svaton, and M. A. Jösch, “Panoramic visual statistics shape retina-wide organization of receptive fields,” Nature Neuroscience, vol. 26. Springer Nature, pp. 606–614, 2023.","ista":"Gupta D, Mlynarski WF, Sumser AL, Symonova O, Svaton J, Jösch MA. 2023. Panoramic visual statistics shape retina-wide organization of receptive fields. Nature Neuroscience. 26, 606–614."},"article_type":"original","page":"606-614","date_published":"2023-04-01T00:00:00Z","file_date_updated":"2023-10-04T11:40:51Z","ec_funded":1,"acknowledgement":"We thank Hiroki Asari for sharing the dataset of naturalistic images, Anton Sumser for sharing visual stimulus code, Yoav Ben Simon for initial explorative work with the generation of AAVs, and Tomas Vega-Zuñiga for help with immunostainings. We also thank Gasper Tkacik and members of the Neuroethology group for their comments on the manuscript. This research was supported by the Scientific Service Units of IST Austria through resources provided by Scientific Computing, the Preclinical Facility, the Lab Support Facility, and the Imaging and Optics Facility. This work was supported by European Union Horizon 2020 Marie Skłodowska-Curie grant 665385 (DG), Austrian Science Fund (FWF) stand-alone grant P 34015 (WM), Human Frontiers Science Program LT000256/2018-L (AS), EMBO ALTF 1098-2017 (AS) and the European Research Council Starting Grant 756502 (MJ).","year":"2023","pmid":1,"publication_status":"published","publisher":"Springer Nature","department":[{"_id":"GradSch"},{"_id":"MaJö"}],"author":[{"orcid":"0000-0001-7400-6665","id":"2A485EBE-F248-11E8-B48F-1D18A9856A87","last_name":"Gupta","first_name":"Divyansh","full_name":"Gupta, Divyansh"},{"last_name":"Mlynarski","first_name":"Wiktor F","id":"358A453A-F248-11E8-B48F-1D18A9856A87","full_name":"Mlynarski, Wiktor F"},{"orcid":"0000-0002-4792-1881","id":"3320A096-F248-11E8-B48F-1D18A9856A87","last_name":"Sumser","first_name":"Anton L","full_name":"Sumser, Anton L"},{"full_name":"Symonova, Olga","last_name":"Symonova","first_name":"Olga","orcid":"0000-0003-2012-9947","id":"3C0C7BC6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Svaton, Jan","last_name":"Svaton","first_name":"Jan","orcid":"0000-0002-6198-2939","id":"f7f724c3-9d6f-11ed-9f44-e5c5f3a5bee2"},{"full_name":"Jösch, Maximilian A","last_name":"Jösch","first_name":"Maximilian A","orcid":"0000-0002-3937-1330","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"id":"12370","status":"public","relation":"research_data"}]},"date_updated":"2023-10-04T11:41:05Z","date_created":"2023-01-23T14:14:19Z","volume":26,"month":"04","publication_identifier":{"issn":["1097-6256"],"eissn":["1546-1726"]},"external_id":{"pmid":["36959418"],"isi":["000955258300002"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","isi":1,"project":[{"name":"International IST Doctoral Program","call_identifier":"H2020","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"},{"grant_number":"P34015","_id":"626c45b5-2b32-11ec-9570-e509828c1ba6","name":"Efficient coding with biophysical realism"},{"_id":"2634E9D2-B435-11E9-9278-68D0E5697425","grant_number":"756502","call_identifier":"H2020","name":"Circuits of Visual Attention"},{"grant_number":"LT000256","_id":"266D407A-B435-11E9-9278-68D0E5697425","name":"Neuronal networks of salience and spatial detection in the murine superior colliculus"},{"name":"Connecting sensory with motor processing in the superior colliculus","grant_number":"ALTF 1098-2017","_id":"264FEA02-B435-11E9-9278-68D0E5697425"}],"doi":"10.1038/s41593-023-01280-0","acknowledged_ssus":[{"_id":"ScienComp"},{"_id":"PreCl"},{"_id":"LifeSc"},{"_id":"Bio"}],"language":[{"iso":"eng"}]},{"acknowledged_ssus":[{"_id":"ScienComp"},{"_id":"M-Shop"},{"_id":"Bio"},{"_id":"PreCl"},{"_id":"LifeSc"}],"doi":"10.15479/AT:ISTA:12370","date_published":"2023-01-26T00:00:00Z","project":[{"call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"},{"name":"Efficient coding with biophysical realism","_id":"626c45b5-2b32-11ec-9570-e509828c1ba6","grant_number":"P34015"},{"_id":"2634E9D2-B435-11E9-9278-68D0E5697425","grant_number":"756502","call_identifier":"H2020","name":"Circuits of Visual Attention"},{"name":"Neuronal networks of salience and spatial detection in the murine superior colliculus","grant_number":"LT000256","_id":"266D407A-B435-11E9-9278-68D0E5697425"},{"grant_number":"ALTF 1098-2017","_id":"264FEA02-B435-11E9-9278-68D0E5697425","name":"Connecting sensory with motor processing in the superior colliculus"}],"oa":1,"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"citation":{"mla":"Gupta, Divyansh, et al. Research Data for: Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12370.","short":"D. Gupta, A.L. Sumser, M.A. Jösch, (2023).","chicago":"Gupta, Divyansh, Anton L Sumser, and Maximilian A Jösch. “Research Data for: Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12370.","ama":"Gupta D, Sumser AL, Jösch MA. Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields. 2023. doi:10.15479/AT:ISTA:12370","ista":"Gupta D, Sumser AL, Jösch MA. 2023. Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12370.","ieee":"D. Gupta, A. L. Sumser, and M. A. Jösch, “Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields.” Institute of Science and Technology Austria, 2023.","apa":"Gupta, D., Sumser, A. L., & Jösch, M. A. (2023). Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12370"},"article_processing_charge":"No","has_accepted_license":"1","day":"26","month":"01","file":[{"file_id":"12396","relation":"main_file","success":1,"checksum":"172cd1c315cbf063c122298396bc17a7","date_updated":"2023-01-26T10:51:34Z","date_created":"2023-01-26T10:51:34Z","access_level":"open_access","file_name":"readme_exvivo.txt","creator":"dgupta","file_size":1917,"content_type":"text/plain"},{"creator":"dgupta","content_type":"text/plain","file_size":1585,"access_level":"open_access","file_name":"readme_invivo.txt","success":1,"checksum":"d3cecda51cad86b1182195731c01a14f","date_created":"2023-01-26T10:50:50Z","date_updated":"2023-01-26T10:50:50Z","file_id":"12397","relation":"main_file"},{"success":1,"checksum":"b85018b27f2c43a6d94ee0e8b841220d","date_updated":"2023-01-26T10:43:30Z","date_created":"2023-01-26T10:43:30Z","file_id":"12398","relation":"main_file","creator":"dgupta","content_type":"application/octet-stream","file_size":5019459775,"access_level":"open_access","file_name":"exvivo_RFs.mat"},{"date_created":"2023-01-26T10:40:35Z","date_updated":"2023-01-26T10:40:35Z","success":1,"checksum":"f75dccd96a3f837cdeed65b5134e697e","file_id":"12399","relation":"main_file","creator":"dgupta","content_type":"application/octet-stream","file_size":94999721,"file_name":"RGC_in_vivo_RFs_selected.mat","access_level":"open_access"},{"file_name":"invivo_BL6-eyeGC8m-dC-3_210924_1534_Result.mat","access_level":"open_access","creator":"dgupta","file_size":720893739,"content_type":"application/octet-stream","file_id":"12382","relation":"main_file","date_created":"2023-01-25T16:03:49Z","date_updated":"2023-01-25T16:03:49Z","success":1,"checksum":"d41836ffe03ea0efb677de31287c8d2e"},{"file_id":"12383","relation":"main_file","date_created":"2023-01-25T16:03:30Z","date_updated":"2023-01-25T16:03:30Z","success":1,"checksum":"0a0cba5208241a95f9bb7684d0a43afa","file_name":"invivo_BL6-eyeGC8m-dC-3_211026_1235_Result.mat","access_level":"open_access","creator":"dgupta","content_type":"application/octet-stream","file_size":248122209},{"content_type":"application/octet-stream","file_size":1757729346,"creator":"dgupta","file_name":"invivo_BL6-eyeGC8m-dC-3_211202_1505_Result.mat","access_level":"open_access","date_updated":"2023-01-25T16:04:54Z","date_created":"2023-01-25T16:04:54Z","checksum":"cf72c1f325631212f305ff1a6d342bc3","success":1,"relation":"main_file","file_id":"12384"},{"file_id":"12385","relation":"main_file","success":1,"checksum":"f4cd25f37d433a7dced3aa8cc326c755","date_created":"2023-01-25T16:04:41Z","date_updated":"2023-01-25T16:04:41Z","access_level":"open_access","file_name":"invivo_BL6-eyeGC8m-dC-3_211208_1738_Result.mat","creator":"dgupta","file_size":1177344595,"content_type":"application/octet-stream"},{"file_id":"12386","relation":"main_file","date_updated":"2023-01-25T16:06:22Z","date_created":"2023-01-25T16:06:22Z","success":1,"checksum":"8c31637d447f2088fdb5ba1c6775f243","file_name":"invivo_BL6-eyeGC8m-dC-3_220111_1735_Result.mat","access_level":"open_access","creator":"dgupta","content_type":"application/octet-stream","file_size":2246592895},{"file_size":2151341770,"content_type":"application/octet-stream","creator":"dgupta","file_name":"invivo_BL6-eyeGC8m-dC-4_220216_0950_Result.mat","access_level":"open_access","date_updated":"2023-01-25T16:07:41Z","date_created":"2023-01-25T16:07:41Z","checksum":"246d660ef06a9151c59b74490d991460","success":1,"relation":"main_file","file_id":"12387"},{"file_size":3719145736,"content_type":"application/octet-stream","creator":"dgupta","file_name":"invivo_BL6-eyeGC8m-dC-4_220428_1351_Result.mat","access_level":"open_access","date_created":"2023-01-26T10:19:02Z","date_updated":"2023-01-26T10:19:02Z","checksum":"b32987dd4589d05b9dfadb93d4178c0d","success":1,"relation":"main_file","file_id":"12393"},{"file_size":5818789752,"content_type":"application/octet-stream","creator":"dgupta","file_name":"invivo_BL6-eyeGC8m-dC-4_220502_1357_Result.mat","access_level":"open_access","date_created":"2023-01-26T10:34:46Z","date_updated":"2023-01-26T10:34:46Z","checksum":"6c88ca7d1df405f04002146d251dc22e","success":1,"relation":"main_file","file_id":"12395"},{"date_created":"2023-01-26T10:23:19Z","date_updated":"2023-01-26T10:23:19Z","success":1,"checksum":"494057076bb0b0a28e4b7146bb50113c","file_id":"12394","relation":"main_file","creator":"dgupta","file_size":2614677996,"content_type":"application/octet-stream","file_name":"invivo_BL6-eyeGC8m-dC-4_220524_1726_Result.mat","access_level":"open_access"},{"access_level":"open_access","file_name":"invivo_BL6-eyeGC8m-dC-5_220613_1750_Result.mat","creator":"dgupta","file_size":1840481462,"content_type":"application/octet-stream","file_id":"12388","relation":"main_file","success":1,"checksum":"e51015d43ede6b1628803c58e424f99f","date_created":"2023-01-25T16:20:51Z","date_updated":"2023-01-25T16:20:51Z"},{"success":1,"checksum":"9483686a44e69eadea428b705c33a9a2","date_created":"2023-01-25T16:23:02Z","date_updated":"2023-01-25T16:23:02Z","file_id":"12389","relation":"main_file","creator":"dgupta","file_size":1617777136,"content_type":"application/octet-stream","access_level":"open_access","file_name":"invivo_BL6-eyeGC8m-dC-5_220630_1518_Result.mat"}],"oa_version":"Published Version","date_created":"2023-01-25T12:45:18Z","date_updated":"2023-10-04T11:41:04Z","contributor":[{"first_name":"Olga","contributor_type":"researcher","last_name":"Symonova","id":"3C0C7BC6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Wiktor F","last_name":"Mlynarski","contributor_type":"researcher","id":"358A453A-F248-11E8-B48F-1D18A9856A87"},{"id":"f7f724c3-9d6f-11ed-9f44-e5c5f3a5bee2","first_name":"Jan","last_name":"Svaton","contributor_type":"researcher"}],"related_material":{"record":[{"id":"12349","status":"public","relation":"used_in_publication"}]},"author":[{"full_name":"Gupta, Divyansh","first_name":"Divyansh","last_name":"Gupta","id":"2A485EBE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7400-6665"},{"id":"3320A096-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4792-1881","first_name":"Anton L","last_name":"Sumser","full_name":"Sumser, Anton L"},{"full_name":"Jösch, Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3937-1330","first_name":"Maximilian A","last_name":"Jösch"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"MaJö"}],"title":"Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields","ddc":["571"],"status":"public","year":"2023","_id":"12370","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ec_funded":1,"abstract":[{"lang":"eng","text":"Statistics of natural scenes are not uniform - their structure varies dramatically from ground to sky. It remains unknown whether these non-uniformities are reflected in the large-scale organization of the early visual system and what benefits such adaptations would confer. Here, by relying on the efficient coding hypothesis, we predict that changes in the structure of receptive fields across visual space increase the efficiency of sensory coding. We show experimentally that, in agreement with our predictions, receptive fields of retinal ganglion cells change their shape along the dorsoventral retinal axis, with a marked surround asymmetry at the visual horizon. Our work demonstrates that, according to principles of efficient coding, the panoramic structure of natural scenes is exploited by the retina across space and cell-types. "}],"file_date_updated":"2023-01-26T10:51:34Z","type":"research_data"},{"publication":"Journal of Electroanalytical Chemistry","citation":{"ista":"Montaña-Mora G, Qi X, Wang X, Chacón-Borrero J, Martinez-Alanis PR, Yu X, Li J, Xue Q, Arbiol J, Ibáñez M, Cabot A. 2023. Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction. Journal of Electroanalytical Chemistry. 936, 117369.","apa":"Montaña-Mora, G., Qi, X., Wang, X., Chacón-Borrero, J., Martinez-Alanis, P. R., Yu, X., … Cabot, A. (2023). Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction. Journal of Electroanalytical Chemistry. Elsevier. https://doi.org/10.1016/j.jelechem.2023.117369","ieee":"G. Montaña-Mora et al., “Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction,” Journal of Electroanalytical Chemistry, vol. 936. Elsevier, 2023.","ama":"Montaña-Mora G, Qi X, Wang X, et al. Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction. Journal of Electroanalytical Chemistry. 2023;936. doi:10.1016/j.jelechem.2023.117369","chicago":"Montaña-Mora, Guillem, Xueqiang Qi, Xiang Wang, Jesus Chacón-Borrero, Paulina R. Martinez-Alanis, Xiaoting Yu, Junshan Li, et al. “Phosphorous Incorporation into Palladium Tin Nanoparticles for the Electrocatalytic Formate Oxidation Reaction.” Journal of Electroanalytical Chemistry. Elsevier, 2023. https://doi.org/10.1016/j.jelechem.2023.117369.","mla":"Montaña-Mora, Guillem, et al. “Phosphorous Incorporation into Palladium Tin Nanoparticles for the Electrocatalytic Formate Oxidation Reaction.” Journal of Electroanalytical Chemistry, vol. 936, 117369, Elsevier, 2023, doi:10.1016/j.jelechem.2023.117369.","short":"G. Montaña-Mora, X. Qi, X. Wang, J. Chacón-Borrero, P.R. Martinez-Alanis, X. Yu, J. Li, Q. Xue, J. Arbiol, M. Ibáñez, A. Cabot, Journal of Electroanalytical Chemistry 936 (2023)."},"article_type":"original","date_published":"2023-05-01T00:00:00Z","scopus_import":"1","day":"01","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12829","title":"Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction","status":"public","intvolume":" 936","oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"The deployment of direct formate fuel cells (DFFCs) relies on the development of active and stable catalysts for the formate oxidation reaction (FOR). Palladium, providing effective full oxidation of formate to CO2, has been widely used as FOR catalyst, but it suffers from low stability, moderate activity, and high cost. Herein, we detail a colloidal synthesis route for the incorporation of P on Pd2Sn nanoparticles. These nanoparticles are dispersed on carbon black and the obtained composite is used as electrocatalytic material for the FOR. The Pd2Sn0.8P-based electrodes present outstanding catalytic activities with record mass current densities up to 10.0 A mgPd-1, well above those of Pd1.6Sn/C reference electrode. These high current densities are further enhanced by increasing the temperature from 25 °C to 40 °C. The Pd2Sn0.8P electrode also allows for slowing down the rapid current decay that generally happens during operation and can be rapidly re-activated through potential cycling. The excellent catalytic performance obtained is rationalized using density functional theory (DFT) calculations."}],"external_id":{"isi":["000967060900001"]},"isi":1,"quality_controlled":"1","project":[{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"doi":"10.1016/j.jelechem.2023.117369","language":[{"iso":"eng"}],"month":"05","publication_identifier":{"issn":["1572-6657"]},"year":"2023","acknowledgement":"This work was carried out within the framework of the project Combenergy, PID2019-105490RB-C32, financed by the Spanish MCIN/AEI/10.13039/501100011033. ICN2 is supported by the Severo Ochoa program from Spanish MCIN / AEI (Grant No.: CEX2021-001214-S). IREC and ICN2 are funded by the CERCA Programme from the Generalitat de Catalunya. Part of the present work has been performed in the frameworks of the Universitat de Barcelona Nanoscience PhD program. ICN2 acknowledges funding from Generalitat de Catalunya 2021SGR00457. This study was supported by MCIN with funding from European Union NextGenerationEU (PRTR-C17.I1) and Generalitat de Catalunya. The authors thank the support from the project NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/ and by “ERDF A way of making Europe”, by the European Union. The project on which these results are based has received funding from the European Union's Horizon 2020 research and innovation programme under Marie Skłodowska-Curie grant agreement No. 801342 (Tecniospring INDUSTRY) and the Government of Catalonia's Agency for Business Competitiveness (ACCIÓ). J. Li is grateful for the project supported by the Natural Science Foundation of Sichuan (2022NSFSC1229). M.I. acknowledges funding by ISTA and the Werner Siemens Foundation.","publication_status":"published","publisher":"Elsevier","department":[{"_id":"MaIb"}],"author":[{"full_name":"Montaña-Mora, Guillem","first_name":"Guillem","last_name":"Montaña-Mora"},{"first_name":"Xueqiang","last_name":"Qi","full_name":"Qi, Xueqiang"},{"last_name":"Wang","first_name":"Xiang","full_name":"Wang, Xiang"},{"first_name":"Jesus","last_name":"Chacón-Borrero","full_name":"Chacón-Borrero, Jesus"},{"full_name":"Martinez-Alanis, Paulina R.","first_name":"Paulina R.","last_name":"Martinez-Alanis"},{"first_name":"Xiaoting","last_name":"Yu","full_name":"Yu, Xiaoting"},{"full_name":"Li, Junshan","first_name":"Junshan","last_name":"Li"},{"first_name":"Qian","last_name":"Xue","full_name":"Xue, Qian"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"last_name":"Ibáñez","first_name":"Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"date_updated":"2023-10-04T11:52:33Z","date_created":"2023-04-16T22:01:06Z","volume":936,"article_number":"117369"},{"abstract":[{"text":"We study a new discretization of the Gaussian curvature for polyhedral surfaces. This discrete Gaussian curvature is defined on each conical singularity of a polyhedral surface as the quotient of the angle defect and the area of the Voronoi cell corresponding to the singularity. We divide polyhedral surfaces into discrete conformal classes using a generalization of discrete conformal equivalence pioneered by Feng Luo. We subsequently show that, in every discrete conformal class, there exists a polyhedral surface with constant discrete Gaussian curvature. We also provide explicit examples to demonstrate that this surface is in general not unique.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"checksum":"cdbf90ba4a7ddcb190d37b9e9d4cb9d3","success":1,"date_updated":"2023-10-04T11:46:24Z","date_created":"2023-10-04T11:46:24Z","relation":"main_file","file_id":"14396","file_size":1026683,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2023_DiscreteGeometry_Kourimska.pdf"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12764","intvolume":" 70","status":"public","title":"Discrete yamabe problem for polyhedral surfaces","ddc":["510"],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","day":"01","scopus_import":"1","date_published":"2023-07-01T00:00:00Z","citation":{"ista":"Kourimska H. 2023. Discrete yamabe problem for polyhedral surfaces. Discrete and Computational Geometry. 70, 123–153.","ieee":"H. Kourimska, “Discrete yamabe problem for polyhedral surfaces,” Discrete and Computational Geometry, vol. 70. Springer Nature, pp. 123–153, 2023.","apa":"Kourimska, H. (2023). Discrete yamabe problem for polyhedral surfaces. Discrete and Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-023-00484-2","ama":"Kourimska H. Discrete yamabe problem for polyhedral surfaces. Discrete and Computational Geometry. 2023;70:123-153. doi:10.1007/s00454-023-00484-2","chicago":"Kourimska, Hana. “Discrete Yamabe Problem for Polyhedral Surfaces.” Discrete and Computational Geometry. Springer Nature, 2023. https://doi.org/10.1007/s00454-023-00484-2.","mla":"Kourimska, Hana. “Discrete Yamabe Problem for Polyhedral Surfaces.” Discrete and Computational Geometry, vol. 70, Springer Nature, 2023, pp. 123–53, doi:10.1007/s00454-023-00484-2.","short":"H. Kourimska, Discrete and Computational Geometry 70 (2023) 123–153."},"publication":"Discrete and Computational Geometry","page":"123-153","article_type":"original","file_date_updated":"2023-10-04T11:46:24Z","author":[{"full_name":"Kourimska, Hana","id":"D9B8E14C-3C26-11EA-98F5-1F833DDC885E","orcid":"0000-0001-7841-0091","first_name":"Hana","last_name":"Kourimska"}],"volume":70,"date_created":"2023-03-26T22:01:09Z","date_updated":"2023-10-04T11:46:48Z","acknowledgement":"Open access funding provided by the Austrian Science Fund (FWF). This research was supported by the FWF grant, Project number I4245-N35, and by the Deutsche Forschungsgemeinschaft (DFG - German Research Foundation) - Project-ID 195170736 - TRR109.","year":"2023","department":[{"_id":"HeEd"}],"publisher":"Springer Nature","publication_status":"published","publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"month":"07","doi":"10.1007/s00454-023-00484-2","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000948148000001"]},"project":[{"call_identifier":"FWF","name":"Algebraic Footprints of Geometric Features in Homology","_id":"26AD5D90-B435-11E9-9278-68D0E5697425","grant_number":"I04245"}],"isi":1,"quality_controlled":"1"},{"oa":1,"doi":"10.15479/at:ista:13331","degree_awarded":"MS","supervisor":[{"full_name":"Wagner, Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1494-0568","first_name":"Uli","last_name":"Wagner"}],"language":[{"iso":"eng"}],"month":"07","publication_identifier":{"issn":["2791-4585"]},"year":"2023","publication_status":"published","department":[{"_id":"GradSch"},{"_id":"UlWa"}],"publisher":"Institute of Science and Technology Austria","author":[{"full_name":"Köse, Seyda","last_name":"Köse","first_name":"Seyda","id":"8ba3170d-dc85-11ea-9058-c4251c96a6eb"}],"related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"12680"}]},"date_updated":"2023-10-04T11:54:56Z","date_created":"2023-07-31T10:20:55Z","file_date_updated":"2023-08-03T15:28:55Z","citation":{"short":"S. Köse, Exterior Algebra and Combinatorics, Institute of Science and Technology Austria, 2023.","mla":"Köse, Seyda. Exterior Algebra and Combinatorics. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:13331.","chicago":"Köse, Seyda. “Exterior Algebra and Combinatorics.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:13331.","ama":"Köse S. Exterior algebra and combinatorics. 2023. doi:10.15479/at:ista:13331","ieee":"S. Köse, “Exterior algebra and combinatorics,” Institute of Science and Technology Austria, 2023.","apa":"Köse, S. (2023). Exterior algebra and combinatorics. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:13331","ista":"Köse S. 2023. Exterior algebra and combinatorics. Institute of Science and Technology Austria."},"page":"26","date_published":"2023-07-31T00:00:00Z","day":"31","has_accepted_license":"1","article_processing_charge":"No","_id":"13331","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","ddc":["510","516"],"title":"Exterior algebra and combinatorics","status":"public","oa_version":"Published Version","file":[{"file_name":"Exterior Algebra and Combinatorics.zip","access_level":"closed","creator":"skoese","content_type":"application/x-zip-compressed","file_size":28684,"file_id":"13333","relation":"source_file","date_created":"2023-07-31T10:16:32Z","date_updated":"2023-07-31T10:16:32Z","checksum":"96ee518d796d02af71395622c45de03c"},{"date_updated":"2023-08-03T15:28:55Z","date_created":"2023-08-03T15:28:55Z","checksum":"f610f4713f88bc477de576aaa46b114e","success":1,"relation":"main_file","file_id":"13480","file_size":4953418,"content_type":"application/pdf","creator":"skoese","file_name":"thesis-pdfa.pdf","access_level":"open_access"}],"type":"dissertation","alternative_title":["ISTA Master's Thesis"],"abstract":[{"text":"The extension of extremal combinatorics to the setting of exterior algebra is a work\r\nin progress that gained attention recently. In this thesis, we study the combinatorial structure of exterior algebra by introducing a dictionary that translates the notions from the set systems into the framework of exterior algebra. We show both generalizations of celebrated Erdös--Ko--Rado theorem and Hilton--Milner theorem to the setting of exterior algebra in the simplest non-trivial case of two-forms.\r\n","lang":"eng"}]},{"article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2023-04-01T00:00:00Z","page":"809-820","article_type":"review","citation":{"chicago":"Stockmaier, Sebastian, Yuko Ulrich, Gregory F. Albery, Sylvia Cremer, and Patricia C. Lopes. “Behavioural Defences against Parasites across Host Social Structures.” Functional Ecology. British Ecological Society, 2023. https://doi.org/10.1111/1365-2435.14310.","short":"S. Stockmaier, Y. Ulrich, G.F. Albery, S. Cremer, P.C. Lopes, Functional Ecology 37 (2023) 809–820.","mla":"Stockmaier, Sebastian, et al. “Behavioural Defences against Parasites across Host Social Structures.” Functional Ecology, vol. 37, no. 4, British Ecological Society, 2023, pp. 809–20, doi:10.1111/1365-2435.14310.","ieee":"S. Stockmaier, Y. Ulrich, G. F. Albery, S. Cremer, and P. C. Lopes, “Behavioural defences against parasites across host social structures,” Functional Ecology, vol. 37, no. 4. British Ecological Society, pp. 809–820, 2023.","apa":"Stockmaier, S., Ulrich, Y., Albery, G. F., Cremer, S., & Lopes, P. C. (2023). Behavioural defences against parasites across host social structures. Functional Ecology. British Ecological Society. https://doi.org/10.1111/1365-2435.14310","ista":"Stockmaier S, Ulrich Y, Albery GF, Cremer S, Lopes PC. 2023. Behavioural defences against parasites across host social structures. Functional Ecology. 37(4), 809–820.","ama":"Stockmaier S, Ulrich Y, Albery GF, Cremer S, Lopes PC. Behavioural defences against parasites across host social structures. Functional Ecology. 2023;37(4):809-820. doi:10.1111/1365-2435.14310"},"publication":"Functional Ecology","issue":"4","abstract":[{"text":"Animals exhibit a variety of behavioural defences against socially transmitted parasites. These defences evolved to increase host fitness by avoiding, resisting or tolerating infection.\r\nBecause they can occur in both infected individuals and their uninfected social partners, these defences often have important consequences for the social group.\r\nHere, we discuss the evolution and ecology of anti-parasite behavioural defences across a taxonomically wide social spectrum, considering colonial groups, stable groups, transitional groups and solitary animals.\r\nWe discuss avoidance, resistance and tolerance behaviours across these social group structures, identifying how social complexity, group composition and interdependent social relationships may contribute to the expression and evolution of behavioural strategies.\r\nFinally, we outline avenues for further investigation such as approaches to quantify group-level responses, and the connection of the physiological and behavioural response to parasites in different social contexts.","lang":"eng"}],"type":"journal_article","oa_version":"None","intvolume":" 37","status":"public","title":"Behavioural defences against parasites across host social structures","_id":"12765","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1365-2435"],"issn":["0269-8463"]},"month":"04","language":[{"iso":"eng"}],"doi":"10.1111/1365-2435.14310","isi":1,"quality_controlled":"1","external_id":{"isi":["000948940500001"]},"volume":37,"date_created":"2023-03-26T22:01:09Z","date_updated":"2023-10-04T11:50:15Z","author":[{"last_name":"Stockmaier","first_name":"Sebastian","full_name":"Stockmaier, Sebastian"},{"full_name":"Ulrich, Yuko","first_name":"Yuko","last_name":"Ulrich"},{"last_name":"Albery","first_name":"Gregory F.","full_name":"Albery, Gregory F."},{"id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","first_name":"Sylvia","last_name":"Cremer","full_name":"Cremer, Sylvia"},{"full_name":"Lopes, Patricia C.","last_name":"Lopes","first_name":"Patricia C."}],"department":[{"_id":"SyCr"}],"publisher":"British Ecological Society","publication_status":"published","year":"2023"},{"oa_version":"Preprint","title":"Erdős-Ko-Rado and Hilton-Milner theorems for two-forms","status":"public","intvolume":" 346","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12680","abstract":[{"lang":"eng","text":"The celebrated Erdős–Ko–Rado theorem about the maximal size of an intersecting family of r-element subsets of was extended to the setting of exterior algebra in [5, Theorem 2.3] and in [6, Theorem 1.4]. However, the equality case has not been settled yet. In this short note, we show that the extension of the Erdős–Ko–Rado theorem and the characterization of the equality case therein, as well as those of the Hilton–Milner theorem to the setting of exterior algebra in the simplest non-trivial case of two-forms follow from a folklore puzzle about possible arrangements of an intersecting family of lines."}],"issue":"6","type":"journal_article","date_published":"2023-06-01T00:00:00Z","article_type":"letter_note","publication":"Discrete Mathematics","citation":{"chicago":"Ivanov, Grigory, and Seyda Köse. “Erdős-Ko-Rado and Hilton-Milner Theorems for Two-Forms.” Discrete Mathematics. Elsevier, 2023. https://doi.org/10.1016/j.disc.2023.113363.","mla":"Ivanov, Grigory, and Seyda Köse. “Erdős-Ko-Rado and Hilton-Milner Theorems for Two-Forms.” Discrete Mathematics, vol. 346, no. 6, 113363, Elsevier, 2023, doi:10.1016/j.disc.2023.113363.","short":"G. Ivanov, S. Köse, Discrete Mathematics 346 (2023).","ista":"Ivanov G, Köse S. 2023. Erdős-Ko-Rado and Hilton-Milner theorems for two-forms. Discrete Mathematics. 346(6), 113363.","ieee":"G. Ivanov and S. Köse, “Erdős-Ko-Rado and Hilton-Milner theorems for two-forms,” Discrete Mathematics, vol. 346, no. 6. Elsevier, 2023.","apa":"Ivanov, G., & Köse, S. (2023). Erdős-Ko-Rado and Hilton-Milner theorems for two-forms. Discrete Mathematics. Elsevier. https://doi.org/10.1016/j.disc.2023.113363","ama":"Ivanov G, Köse S. Erdős-Ko-Rado and Hilton-Milner theorems for two-forms. Discrete Mathematics. 2023;346(6). doi:10.1016/j.disc.2023.113363"},"day":"01","article_processing_charge":"No","scopus_import":"1","date_updated":"2023-10-04T11:54:57Z","date_created":"2023-02-26T23:01:00Z","volume":346,"author":[{"last_name":"Ivanov","first_name":"Grigory","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","full_name":"Ivanov, Grigory"},{"id":"8ba3170d-dc85-11ea-9058-c4251c96a6eb","first_name":"Seyda","last_name":"Köse","full_name":"Köse, Seyda"}],"related_material":{"record":[{"id":"13331","status":"public","relation":"dissertation_contains"}]},"publication_status":"published","department":[{"_id":"UlWa"},{"_id":"GradSch"}],"publisher":"Elsevier","year":"2023","article_number":"113363","language":[{"iso":"eng"}],"doi":"10.1016/j.disc.2023.113363","quality_controlled":"1","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2201.10892"}],"external_id":{"arxiv":["2201.10892"]},"oa":1,"month":"06","publication_identifier":{"issn":["0012-365X"]}},{"type":"journal_article","abstract":[{"text":"In the physics literature the spectral form factor (SFF), the squared Fourier transform of the empirical eigenvalue density, is the most common tool to test universality for disordered quantum systems, yet previous mathematical results have been restricted only to two exactly solvable models (Forrester in J Stat Phys 183:33, 2021. https://doi.org/10.1007/s10955-021-02767-5, Commun Math Phys 387:215–235, 2021. https://doi.org/10.1007/s00220-021-04193-w). We rigorously prove the physics prediction on SFF up to an intermediate time scale for a large class of random matrices using a robust method, the multi-resolvent local laws. Beyond Wigner matrices we also consider the monoparametric ensemble and prove that universality of SFF can already be triggered by a single random parameter, supplementing the recently proven Wigner–Dyson universality (Cipolloni et al. in Probab Theory Relat Fields, 2021. https://doi.org/10.1007/s00440-022-01156-7) to larger spectral scales. Remarkably, extensive numerics indicates that our formulas correctly predict the SFF in the entire slope-dip-ramp regime, as customarily called in physics.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12792","title":"On the spectral form factor for random matrices","status":"public","ddc":["510"],"intvolume":" 401","file":[{"checksum":"72057940f76654050ca84a221f21786c","success":1,"date_created":"2023-10-04T12:09:18Z","date_updated":"2023-10-04T12:09:18Z","relation":"main_file","file_id":"14397","content_type":"application/pdf","file_size":859967,"creator":"dernst","access_level":"open_access","file_name":"2023_CommMathPhysics_Cipolloni.pdf"}],"oa_version":"Published Version","scopus_import":"1","day":"01","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","publication":"Communications in Mathematical Physics","citation":{"chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “On the Spectral Form Factor for Random Matrices.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04692-y.","mla":"Cipolloni, Giorgio, et al. “On the Spectral Form Factor for Random Matrices.” Communications in Mathematical Physics, vol. 401, Springer Nature, 2023, pp. 1665–700, doi:10.1007/s00220-023-04692-y.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Communications in Mathematical Physics 401 (2023) 1665–1700.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. On the spectral form factor for random matrices. Communications in Mathematical Physics. 401, 1665–1700.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). On the spectral form factor for random matrices. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04692-y","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “On the spectral form factor for random matrices,” Communications in Mathematical Physics, vol. 401. Springer Nature, pp. 1665–1700, 2023.","ama":"Cipolloni G, Erdös L, Schröder DJ. On the spectral form factor for random matrices. Communications in Mathematical Physics. 2023;401:1665-1700. doi:10.1007/s00220-023-04692-y"},"article_type":"original","page":"1665-1700","date_published":"2023-07-01T00:00:00Z","file_date_updated":"2023-10-04T12:09:18Z","ec_funded":1,"year":"2023","acknowledgement":"We are grateful to the authors of [25] for sharing with us their insights and preliminary numerical results. We are especially thankful to Stephen Shenker for very valuable advice over several email communications. Helpful comments on the manuscript from Peter Forrester and from the anonymous referees are also acknowledged.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).\r\nLászló Erdős: Partially supported by ERC Advanced Grant \"RMTBeyond\" No. 101020331. Dominik Schröder: Supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation.","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"LaEr"}],"author":[{"id":"42198EFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4901-7992","first_name":"Giorgio","last_name":"Cipolloni","full_name":"Cipolloni, Giorgio"},{"id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","first_name":"László","last_name":"Erdös","full_name":"Erdös, László"},{"full_name":"Schröder, Dominik J","first_name":"Dominik J","last_name":"Schröder","id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856"}],"date_updated":"2023-10-04T12:10:31Z","date_created":"2023-04-02T22:01:11Z","volume":401,"month":"07","publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000957343500001"]},"isi":1,"quality_controlled":"1","project":[{"call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"doi":"10.1007/s00220-023-04692-y","language":[{"iso":"eng"}]},{"volume":70,"date_updated":"2023-10-04T12:03:40Z","date_created":"2023-03-05T23:01:06Z","related_material":{"record":[{"id":"9605","relation":"earlier_version","status":"public"}]},"author":[{"last_name":"Corbet","first_name":"René","full_name":"Corbet, René"},{"id":"36E4574A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8030-9299","first_name":"Michael","last_name":"Kerber","full_name":"Kerber, Michael"},{"full_name":"Lesnick, Michael","last_name":"Lesnick","first_name":"Michael"},{"first_name":"Georg F","last_name":"Osang","id":"464B40D6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8882-5116","full_name":"Osang, Georg F"}],"department":[{"_id":"HeEd"}],"publisher":"Springer Nature","publication_status":"published","year":"2023","acknowledgement":"We thank the anonymous reviewers for many helpful comments and suggestions, which led to substantial improvements of the paper. The first two authors were supported by the Austrian Science Fund (FWF) grant number P 29984-N35 and W1230. The first author was partly supported by an Austrian Marshall Plan Scholarship, and by the Brummer & Partners MathDataLab. A conference version of this paper was presented at the 37th International Symposium on Computational Geometry (SoCG 2021). Open access funding provided by the Royal Institute of Technology.","file_date_updated":"2023-03-07T14:40:14Z","language":[{"iso":"eng"}],"doi":"10.1007/s00454-022-00476-8","isi":1,"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2103.07823"],"isi":["000936496800001"]},"oa":1,"publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"month":"09","oa_version":"Published Version","file":[{"checksum":"71ce7e59f7ee4620acc704fecca620c2","success":1,"date_created":"2023-03-07T14:40:14Z","date_updated":"2023-03-07T14:40:14Z","relation":"main_file","file_id":"12715","content_type":"application/pdf","file_size":1359323,"creator":"cchlebak","access_level":"open_access","file_name":"2023_DisCompGeo_Corbet.pdf"}],"intvolume":" 70","ddc":["000"],"status":"public","title":"Computing the multicover bifiltration","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12709","abstract":[{"text":"Given a finite set A ⊂ ℝ^d, let Cov_{r,k} denote the set of all points within distance r to at least k points of A. Allowing r and k to vary, we obtain a 2-parameter family of spaces that grow larger when r increases or k decreases, called the multicover bifiltration. Motivated by the problem of computing the homology of this bifiltration, we introduce two closely related combinatorial bifiltrations, one polyhedral and the other simplicial, which are both topologically equivalent to the multicover bifiltration and far smaller than a Čech-based model considered in prior work of Sheehy. Our polyhedral construction is a bifiltration of the rhomboid tiling of Edelsbrunner and Osang, and can be efficiently computed using a variant of an algorithm given by these authors as well. Using an implementation for dimension 2 and 3, we provide experimental results. Our simplicial construction is useful for understanding the polyhedral construction and proving its correctness.","lang":"eng"}],"type":"journal_article","date_published":"2023-09-01T00:00:00Z","page":"376-405","article_type":"original","citation":{"chicago":"Corbet, René, Michael Kerber, Michael Lesnick, and Georg F Osang. “Computing the Multicover Bifiltration.” Discrete and Computational Geometry. Springer Nature, 2023. https://doi.org/10.1007/s00454-022-00476-8.","mla":"Corbet, René, et al. “Computing the Multicover Bifiltration.” Discrete and Computational Geometry, vol. 70, Springer Nature, 2023, pp. 376–405, doi:10.1007/s00454-022-00476-8.","short":"R. Corbet, M. Kerber, M. Lesnick, G.F. Osang, Discrete and Computational Geometry 70 (2023) 376–405.","ista":"Corbet R, Kerber M, Lesnick M, Osang GF. 2023. Computing the multicover bifiltration. Discrete and Computational Geometry. 70, 376–405.","apa":"Corbet, R., Kerber, M., Lesnick, M., & Osang, G. F. (2023). Computing the multicover bifiltration. Discrete and Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-022-00476-8","ieee":"R. Corbet, M. Kerber, M. Lesnick, and G. F. Osang, “Computing the multicover bifiltration,” Discrete and Computational Geometry, vol. 70. Springer Nature, pp. 376–405, 2023.","ama":"Corbet R, Kerber M, Lesnick M, Osang GF. Computing the multicover bifiltration. Discrete and Computational Geometry. 2023;70:376-405. doi:10.1007/s00454-022-00476-8"},"publication":"Discrete and Computational Geometry","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","day":"01","scopus_import":"1"},{"abstract":[{"lang":"eng","text":"Kleinjohann (Archiv der Mathematik 35(1):574–582, 1980; Mathematische Zeitschrift 176(3), 327–344, 1981) and Bangert (Archiv der Mathematik 38(1):54–57, 1982) extended the reach rch(S) from subsets S of Euclidean space to the reach rchM(S) of subsets S of Riemannian manifolds M, where M is smooth (we’ll assume at least C3). Bangert showed that sets of positive reach in Euclidean space and Riemannian manifolds are very similar. In this paper we introduce a slight variant of Kleinjohann’s and Bangert’s extension and quantify the similarity between sets of positive reach in Euclidean space and Riemannian manifolds in a new way: Given p∈M and q∈S, we bound the local feature size (a local version of the reach) of its lifting to the tangent space via the inverse exponential map (exp−1p(S)) at q, assuming that rchM(S) and the geodesic distance dM(p,q) are bounded. These bounds are motivated by the importance of the reach and local feature size to manifold learning, topological inference, and triangulating manifolds and the fact that intrinsic approaches circumvent the curse of dimensionality."}],"type":"journal_article","oa_version":"Submitted Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12763","intvolume":" 7","status":"public","title":"The reach of subsets of manifolds","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2023-09-01T00:00:00Z","citation":{"chicago":"Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets of Manifolds.” Journal of Applied and Computational Topology. Springer Nature, 2023. https://doi.org/10.1007/s41468-023-00116-x.","short":"J.D. Boissonnat, M. Wintraecken, Journal of Applied and Computational Topology 7 (2023) 619–641.","mla":"Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets of Manifolds.” Journal of Applied and Computational Topology, vol. 7, Springer Nature, 2023, pp. 619–41, doi:10.1007/s41468-023-00116-x.","apa":"Boissonnat, J. D., & Wintraecken, M. (2023). The reach of subsets of manifolds. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-023-00116-x","ieee":"J. D. Boissonnat and M. Wintraecken, “The reach of subsets of manifolds,” Journal of Applied and Computational Topology, vol. 7. Springer Nature, pp. 619–641, 2023.","ista":"Boissonnat JD, Wintraecken M. 2023. The reach of subsets of manifolds. Journal of Applied and Computational Topology. 7, 619–641.","ama":"Boissonnat JD, Wintraecken M. The reach of subsets of manifolds. Journal of Applied and Computational Topology. 2023;7:619-641. doi:10.1007/s41468-023-00116-x"},"publication":"Journal of Applied and Computational Topology","page":"619-641","article_type":"original","ec_funded":1,"author":[{"full_name":"Boissonnat, Jean Daniel","last_name":"Boissonnat","first_name":"Jean Daniel"},{"full_name":"Wintraecken, Mathijs","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7472-2220","first_name":"Mathijs","last_name":"Wintraecken"}],"volume":7,"date_created":"2023-03-26T22:01:08Z","date_updated":"2023-10-04T12:07:18Z","acknowledgement":"We thank Eddie Aamari, David Cohen-Steiner, Isa Costantini, Fred Chazal, Ramsay Dyer, André Lieutier, and Alef Sterk for discussion and Pierre Pansu for encouragement. We further acknowledge the anonymous reviewers whose comments helped improve the exposition.\r\nThe research leading to these results has received funding from the European Research Council (ERC) under the European Union’s Seventh Framework Programme (FP/2007-2013) / ERC Grant Agreement No. 339025 GUDHI (Algorithmic Foundations of Geometry Understanding in Higher Dimensions). The first author is further supported by the French government, through the 3IA Côte d’Azur Investments in the Future project managed by the National Research Agency (ANR) with the reference number ANR-19-P3IA-0002. The second author is supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411 and the Austrian science fund (FWF) M-3073.","year":"2023","department":[{"_id":"HeEd"}],"publisher":"Springer Nature","publication_status":"published","publication_identifier":{"issn":["2367-1726"],"eissn":["2367-1734"]},"month":"09","doi":"10.1007/s41468-023-00116-x","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://inserm.hal.science/INRIA-SACLAY/hal-04083524v1","open_access":"1"}],"oa":1,"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"},{"name":"Learning and triangulating manifolds via collapses","grant_number":"M03073","_id":"fc390959-9c52-11eb-aca3-afa58bd282b2"}],"quality_controlled":"1"},{"oa_version":"Published Version","file":[{"date_created":"2023-07-14T12:03:48Z","date_updated":"2023-07-14T12:03:48Z","success":1,"checksum":"d40e57a04448ea5c77d7e1cfb9590a81","file_id":"13224","relation":"main_file","creator":"esarac","file_size":755529,"content_type":"application/pdf","file_name":"CONCUR23.pdf","access_level":"open_access"}],"_id":"13221","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["000"],"title":"Safety and liveness of quantitative automata","status":"public","intvolume":" 279","abstract":[{"lang":"eng","text":"The safety-liveness dichotomy is a fundamental concept in formal languages which plays a key role in verification. Recently, this dichotomy has been lifted to quantitative properties, which are arbitrary functions from infinite words to partially-ordered domains. We look into harnessing the dichotomy for the specific classes of quantitative properties expressed by quantitative automata. These automata contain finitely many states and rational-valued transition weights, and their common value functions Inf, Sup, LimInf, LimSup, LimInfAvg, LimSupAvg, and DSum map infinite words into the totallyordered domain of real numbers. In this automata-theoretic setting, we establish a connection between quantitative safety and topological continuity and provide an alternative characterization of quantitative safety and liveness in terms of their boolean counterparts. For all common value functions, we show how the safety closure of a quantitative automaton can be constructed in PTime, and we provide PSpace-complete checks of whether a given quantitative automaton is safe or live, with the exception of LimInfAvg and LimSupAvg automata, for which the safety check is in ExpSpace. Moreover, for deterministic Sup, LimInf, and LimSup automata, we give PTime decompositions into safe and live automata. These decompositions enable the separation of techniques for safety and liveness verification for quantitative specifications."}],"type":"conference","alternative_title":["LIPIcs"],"date_published":"2023-09-01T00:00:00Z","publication":"34th International Conference on Concurrency Theory","citation":{"ama":"Boker U, Henzinger TA, Mazzocchi NA, Sarac NE. Safety and liveness of quantitative automata. In: 34th International Conference on Concurrency Theory. Vol 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.CONCUR.2023.17","apa":"Boker, U., Henzinger, T. A., Mazzocchi, N. A., & Sarac, N. E. (2023). Safety and liveness of quantitative automata. In 34th International Conference on Concurrency Theory (Vol. 279). Antwerp, Belgium: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2023.17","ieee":"U. Boker, T. A. Henzinger, N. A. Mazzocchi, and N. E. Sarac, “Safety and liveness of quantitative automata,” in 34th International Conference on Concurrency Theory, Antwerp, Belgium, 2023, vol. 279.","ista":"Boker U, Henzinger TA, Mazzocchi NA, Sarac NE. 2023. Safety and liveness of quantitative automata. 34th International Conference on Concurrency Theory. CONCUR: Conference on Concurrency Theory, LIPIcs, vol. 279, 17.","short":"U. Boker, T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 34th International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","mla":"Boker, Udi, et al. “Safety and Liveness of Quantitative Automata.” 34th International Conference on Concurrency Theory, vol. 279, 17, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.CONCUR.2023.17.","chicago":"Boker, Udi, Thomas A Henzinger, Nicolas Adrien Mazzocchi, and Naci E Sarac. “Safety and Liveness of Quantitative Automata.” In 34th International Conference on Concurrency Theory, Vol. 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.CONCUR.2023.17."},"day":"01","has_accepted_license":"1","article_processing_charge":"No","author":[{"full_name":"Boker, Udi","id":"31E297B6-F248-11E8-B48F-1D18A9856A87","last_name":"Boker","first_name":"Udi"},{"last_name":"Henzinger","first_name":"Thomas A","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A"},{"full_name":"Mazzocchi, Nicolas Adrien","last_name":"Mazzocchi","first_name":"Nicolas Adrien","id":"b26baa86-3308-11ec-87b0-8990f34baa85"},{"full_name":"Sarac, Naci E","id":"8C6B42F8-C8E6-11E9-A03A-F2DCE5697425","last_name":"Sarac","first_name":"Naci E"}],"date_updated":"2023-10-09T07:14:03Z","date_created":"2023-07-14T10:00:15Z","volume":279,"acknowledgement":"We thank Christof Löding for pointing us to some results on PSpace-hardess of universality problems and the anonymous reviewers for their helpful comments. This work was supported in part by the ERC-2020-AdG 101020093 and the Israel Science Foundation grant 2410/22.","year":"2023","publication_status":"published","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","department":[{"_id":"GradSch"},{"_id":"ToHe"}],"file_date_updated":"2023-07-14T12:03:48Z","ec_funded":1,"article_number":"17","conference":{"name":"CONCUR: Conference on Concurrency Theory","location":"Antwerp, Belgium","start_date":"2023-09-18","end_date":"2023-09-23"},"doi":"10.4230/LIPIcs.CONCUR.2023.17","language":[{"iso":"eng"}],"external_id":{"arxiv":["2307.06016"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","project":[{"call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093"}],"month":"09","publication_identifier":{"eissn":["1868-8969"],"isbn":["9783959772990"]}},{"doi":"10.1103/PhysRevB.108.104205","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2306.09455","open_access":"1"}],"oa":1,"external_id":{"arxiv":["2306.09455"]},"quality_controlled":"1","month":"09","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"author":[{"full_name":"Babkin, Serafim","last_name":"Babkin","first_name":"Serafim","orcid":"0009-0003-7382-8036","id":"41e64307-6672-11ee-b9ad-cc7a0075a479"},{"first_name":"Jonas F.","last_name":"Karcher","full_name":"Karcher, Jonas F."},{"full_name":"Burmistrov, Igor S.","first_name":"Igor S.","last_name":"Burmistrov"},{"full_name":"Mirlin, Alexander D.","last_name":"Mirlin","first_name":"Alexander D."}],"date_created":"2023-10-08T22:01:17Z","date_updated":"2023-10-09T07:09:30Z","volume":108,"year":"2023","acknowledgement":"We thank Ilya Gruzberg for many illuminating discussions. S.S.B., J.F.K., and A.D.M. acknowledge support by the Deutsche Forschungsgemeinschaft (DFG) via the Grant\r\nNo. MI 658/14-1. I.S.B. acknowledges support from Russian Science Foundation (Grant No. 22-42-04416).","publication_status":"published","department":[{"_id":"MaSe"}],"publisher":"American Physical Society","article_number":"104205","date_published":"2023-09-01T00:00:00Z","publication":"Physical Review B","citation":{"chicago":"Babkin, Serafim, Jonas F. Karcher, Igor S. Burmistrov, and Alexander D. Mirlin. “Generalized Surface Multifractality in Two-Dimensional Disordered Systems.” Physical Review B. American Physical Society, 2023. https://doi.org/10.1103/PhysRevB.108.104205.","short":"S. Babkin, J.F. Karcher, I.S. Burmistrov, A.D. Mirlin, Physical Review B 108 (2023).","mla":"Babkin, Serafim, et al. “Generalized Surface Multifractality in Two-Dimensional Disordered Systems.” Physical Review B, vol. 108, no. 10, 104205, American Physical Society, 2023, doi:10.1103/PhysRevB.108.104205.","ieee":"S. Babkin, J. F. Karcher, I. S. Burmistrov, and A. D. Mirlin, “Generalized surface multifractality in two-dimensional disordered systems,” Physical Review B, vol. 108, no. 10. American Physical Society, 2023.","apa":"Babkin, S., Karcher, J. F., Burmistrov, I. S., & Mirlin, A. D. (2023). Generalized surface multifractality in two-dimensional disordered systems. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.108.104205","ista":"Babkin S, Karcher JF, Burmistrov IS, Mirlin AD. 2023. Generalized surface multifractality in two-dimensional disordered systems. Physical Review B. 108(10), 104205.","ama":"Babkin S, Karcher JF, Burmistrov IS, Mirlin AD. Generalized surface multifractality in two-dimensional disordered systems. Physical Review B. 2023;108(10). doi:10.1103/PhysRevB.108.104205"},"article_type":"original","day":"01","article_processing_charge":"No","scopus_import":"1","oa_version":"Preprint","_id":"14406","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Generalized surface multifractality in two-dimensional disordered systems","status":"public","intvolume":" 108","abstract":[{"text":"Recently, a concept of generalized multifractality, which characterizes fluctuations and correlations of critical eigenstates, was introduced and explored for all 10 symmetry classes of disordered systems. Here, by using the nonlinear sigma-model (\r\nNL\r\nσ\r\nM\r\n) field theory, we extend the theory of generalized multifractality to boundaries of systems at criticality. Our numerical simulations on two-dimensional systems of symmetry classes A, C, and AII fully confirm the analytical predictions of pure-scaling observables and Weyl symmetry relations between critical exponents of surface generalized multifractality. This demonstrates the validity of the \r\nNL\r\nσ\r\nM\r\n for the description of Anderson-localization critical phenomena, not only in the bulk but also on the boundary. The critical exponents strongly violate generalized parabolicity, in analogy with earlier results for the bulk, corroborating the conclusion that the considered Anderson-localization critical points are not described by conformal field theories. We further derive relations between generalized surface multifractal spectra and linear combinations of Lyapunov exponents of a strip in quasi-one-dimensional geometry, which hold under the assumption of invariance with respect to a logarithmic conformal map. Our numerics demonstrate that these relations hold with an excellent accuracy. Taken together, our results indicate an intriguing situation: the conformal invariance is broken but holds partially at critical points of Anderson localization.","lang":"eng"}],"issue":"10","type":"journal_article"},{"abstract":[{"lang":"eng","text":"This paper focuses on the implementation details of the baseline methods and a recent lightweight conditional model extrapolation algorithm LIMES [5] for streaming data under class-prior shift. LIMES achieves superior performance over the baseline methods, especially concerning the minimum-across-day accuracy, which is important for the users of the system. In this work, the key measures to facilitate reproducibility and enhance the credibility of the results are described."}],"type":"conference","alternative_title":["LNCS"],"author":[{"last_name":"Tomaszewska","first_name":"Paulina","full_name":"Tomaszewska, Paulina"},{"full_name":"Lampert, Christoph","first_name":"Christoph","last_name":"Lampert","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887"}],"date_created":"2023-10-08T22:01:18Z","date_updated":"2023-10-09T06:48:02Z","volume":14068,"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14410","year":"2023","status":"public","title":"On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift","publication_status":"published","department":[{"_id":"ChLa"}],"publisher":"Springer Nature","intvolume":" 14068","month":"08","day":"20","publication_identifier":{"isbn":["9783031407727"],"eissn":["1611-3349"],"issn":["0302-9743"]},"article_processing_charge":"No","scopus_import":"1","conference":{"end_date":"2022-08-21","location":"Montreal, Canada","start_date":"2022-08-21","name":"RRPR: Reproducible Research in Pattern Recognition"},"date_published":"2023-08-20T00:00:00Z","doi":"10.1007/978-3-031-40773-4_6","language":[{"iso":"eng"}],"publication":"International Workshop on Reproducible Research in Pattern Recognition","citation":{"chicago":"Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.” In International Workshop on Reproducible Research in Pattern Recognition, 14068:67–73. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-40773-4_6.","short":"P. Tomaszewska, C. Lampert, in:, International Workshop on Reproducible Research in Pattern Recognition, Springer Nature, 2023, pp. 67–73.","mla":"Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.” International Workshop on Reproducible Research in Pattern Recognition, vol. 14068, Springer Nature, 2023, pp. 67–73, doi:10.1007/978-3-031-40773-4_6.","ieee":"P. Tomaszewska and C. Lampert, “On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift,” in International Workshop on Reproducible Research in Pattern Recognition, Montreal, Canada, 2023, vol. 14068, pp. 67–73.","apa":"Tomaszewska, P., & Lampert, C. (2023). On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. In International Workshop on Reproducible Research in Pattern Recognition (Vol. 14068, pp. 67–73). Montreal, Canada: Springer Nature. https://doi.org/10.1007/978-3-031-40773-4_6","ista":"Tomaszewska P, Lampert C. 2023. On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. International Workshop on Reproducible Research in Pattern Recognition. RRPR: Reproducible Research in Pattern Recognition, LNCS, vol. 14068, 67–73.","ama":"Tomaszewska P, Lampert C. On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. In: International Workshop on Reproducible Research in Pattern Recognition. Vol 14068. Springer Nature; 2023:67-73. doi:10.1007/978-3-031-40773-4_6"},"quality_controlled":"1","page":"67-73"},{"type":"conference","alternative_title":["LIPIcs"],"abstract":[{"lang":"eng","text":"We introduce hypernode automata as a new specification formalism for hyperproperties of concurrent systems. They are finite automata with nodes labeled with hypernode logic formulas and transitions labeled with actions. A hypernode logic formula specifies relations between sequences of variable values in different system executions. Unlike HyperLTL, hypernode logic takes an asynchronous view on execution traces by constraining the values and the order of value changes of each variable without correlating the timing of the changes. Different execution traces are synchronized solely through the transitions of hypernode automata. Hypernode automata naturally combine asynchronicity at the node level with synchronicity at the transition level. We show that the model-checking problem for hypernode automata is decidable over action-labeled Kripke structures, whose actions induce transitions of the specification automata. For this reason, hypernode automaton is a suitable formalism for specifying and verifying asynchronous hyperproperties, such as declassifying observational determinism in multi-threaded programs."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14405","title":"Hypernode automata","ddc":["000"],"status":"public","intvolume":" 279","file":[{"date_updated":"2023-10-09T07:42:45Z","date_created":"2023-10-09T07:42:45Z","checksum":"215765e40454d806174ac0a223e8d6fa","success":1,"relation":"main_file","file_id":"14413","file_size":795790,"content_type":"application/pdf","creator":"dernst","file_name":"2023_LIPcs_Bartocci.pdf","access_level":"open_access"}],"oa_version":"Published Version","scopus_import":"1","day":"01","article_processing_charge":"Yes","has_accepted_license":"1","publication":"34th International Conference on Concurrency Theory","citation":{"short":"E. Bartocci, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa, in:, 34th International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","mla":"Bartocci, Ezio, et al. “Hypernode Automata.” 34th International Conference on Concurrency Theory, vol. 279, 21, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.CONCUR.2023.21.","chicago":"Bartocci, Ezio, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. “Hypernode Automata.” In 34th International Conference on Concurrency Theory, Vol. 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.CONCUR.2023.21.","ama":"Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode automata. In: 34th International Conference on Concurrency Theory. Vol 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.CONCUR.2023.21","apa":"Bartocci, E., Henzinger, T. A., Nickovic, D., & Oliveira da Costa, A. (2023). Hypernode automata. In 34th International Conference on Concurrency Theory (Vol. 279). Antwerp, Belgium: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2023.21","ieee":"E. Bartocci, T. A. Henzinger, D. Nickovic, and A. Oliveira da Costa, “Hypernode automata,” in 34th International Conference on Concurrency Theory, Antwerp, Belgium, 2023, vol. 279.","ista":"Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. 2023. Hypernode automata. 34th International Conference on Concurrency Theory. CONCUR: Conference on Concurrency Theory, LIPIcs, vol. 279, 21."},"date_published":"2023-09-01T00:00:00Z","article_number":"21","file_date_updated":"2023-10-09T07:42:45Z","ec_funded":1,"year":"2023","acknowledgement":"This work was supported in part by the Austrian Science Fund (FWF) SFB project\r\nSpyCoDe F8502, by the FWF projects ZK-35 and W1255-N23, and by the ERC Advanced Grant\r\nVAMOS 101020093.","publication_status":"published","department":[{"_id":"ToHe"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","author":[{"full_name":"Bartocci, Ezio","last_name":"Bartocci","first_name":"Ezio"},{"orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","first_name":"Thomas A","full_name":"Henzinger, Thomas A"},{"full_name":"Nickovic, Dejan","last_name":"Nickovic","first_name":"Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Oliveira da Costa, Ana","id":"f347ec37-6676-11ee-b395-a888cb7b4fb4","orcid":"0000-0002-8741-5799","first_name":"Ana","last_name":"Oliveira da Costa"}],"date_updated":"2023-10-09T07:43:44Z","date_created":"2023-10-08T22:01:16Z","volume":279,"month":"09","publication_identifier":{"isbn":["9783959772990"],"issn":["18688969"]},"external_id":{"arxiv":["2305.02836"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","project":[{"grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020"}],"conference":{"end_date":"2023-09-22","start_date":"2023-09-19","location":"Antwerp, Belgium","name":"CONCUR: Conference on Concurrency Theory"},"doi":"10.4230/LIPIcs.CONCUR.2023.21","language":[{"iso":"eng"}]},{"scopus_import":"1","article_processing_charge":"No","publication_identifier":{"eissn":["1432-2064"],"issn":["0178-8051"]},"month":"09","day":"28","quality_controlled":"1","article_type":"original","external_id":{"arxiv":["2210.12060"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2210.12060"}],"citation":{"mla":"Cipolloni, Giorgio, et al. “Mesoscopic Central Limit Theorem for Non-Hermitian Random Matrices.” Probability Theory and Related Fields, Springer Nature, 2023, doi:10.1007/s00440-023-01229-1.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields (2023).","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Mesoscopic Central Limit Theorem for Non-Hermitian Random Matrices.” Probability Theory and Related Fields. Springer Nature, 2023. https://doi.org/10.1007/s00440-023-01229-1.","ama":"Cipolloni G, Erdös L, Schröder DJ. Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields. 2023. doi:10.1007/s00440-023-01229-1","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields.","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Mesoscopic central limit theorem for non-Hermitian random matrices,” Probability Theory and Related Fields. Springer Nature, 2023.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields. Springer Nature. https://doi.org/10.1007/s00440-023-01229-1"},"publication":"Probability Theory and Related Fields","language":[{"iso":"eng"}],"doi":"10.1007/s00440-023-01229-1","date_published":"2023-09-28T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"We prove that the mesoscopic linear statistics ∑if(na(σi−z0)) of the eigenvalues {σi}i of large n×n non-Hermitian random matrices with complex centred i.i.d. entries are asymptotically Gaussian for any H20-functions f around any point z0 in the bulk of the spectrum on any mesoscopic scale 0Science, vol. 381, no. 6665, AAAS, 2023, pp. 1413–14, doi:10.1126/science.adk3070.","short":"D. Balazs, M. Ibáñez, Science 381 (2023) 1413–1414.","chicago":"Balazs, Daniel, and Maria Ibáñez. “Widening the Use of 3D Printing.” Science. AAAS, 2023. https://doi.org/10.1126/science.adk3070.","ama":"Balazs D, Ibáñez M. Widening the use of 3D printing. Science. 2023;381(6665):1413-1414. doi:10.1126/science.adk3070","ista":"Balazs D, Ibáñez M. 2023. Widening the use of 3D printing. Science. 381(6665), 1413–1414.","ieee":"D. Balazs and M. Ibáñez, “Widening the use of 3D printing,” Science, vol. 381, no. 6665. AAAS, pp. 1413–1414, 2023.","apa":"Balazs, D., & Ibáñez, M. (2023). Widening the use of 3D printing. Science. AAAS. https://doi.org/10.1126/science.adk3070"},"date_published":"2023-09-29T00:00:00Z","scopus_import":"1","day":"29","article_processing_charge":"No"},{"month":"08","publication_identifier":{"eissn":["1868-8969"],"isbn":["9783959772921"]},"language":[{"iso":"eng"}],"conference":{"name":"MFCS: Symposium on Mathematical Foundations of Computer Science","location":"Bordeaux, France","start_date":"2023-08-28","end_date":"2023-09-01"},"doi":"10.4230/LIPIcs.MFCS.2023.15","quality_controlled":"1","project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2307.06611"]},"file_date_updated":"2023-10-09T09:19:11Z","ec_funded":1,"article_number":"15","date_updated":"2023-10-09T09:22:37Z","date_created":"2023-10-09T09:21:05Z","volume":272,"author":[{"first_name":"Christel","last_name":"Baier","full_name":"Baier, Christel"},{"first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"full_name":"Meggendorfer, Tobias","last_name":"Meggendorfer","first_name":"Tobias","orcid":"0000-0002-1712-2165","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1"},{"first_name":"Jakob","last_name":"Piribauer","full_name":"Piribauer, Jakob"}],"publication_status":"published","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","department":[{"_id":"KrCh"}],"acknowledgement":"This work was partly funded by the ERC CoG 863818 (ForM-SMArt), the DFG Grant\r\n389792660 as part of TRR 248 (Foundations of Perspicuous Software Systems), the Cluster of\r\nExcellence EXC 2050/1 (CeTI, project ID 390696704, as part of Germany’s Excellence Strategy), and the DFG projects BA-1679/11-1 and BA-1679/12-1.","year":"2023","day":"21","article_processing_charge":"Yes","has_accepted_license":"1","scopus_import":"1","date_published":"2023-08-21T00:00:00Z","publication":"48th International Symposium on Mathematical Foundations of Computer Science","citation":{"chicago":"Baier, Christel, Krishnendu Chatterjee, Tobias Meggendorfer, and Jakob Piribauer. “Entropic Risk for Turn-Based Stochastic Games.” In 48th International Symposium on Mathematical Foundations of Computer Science, Vol. 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.MFCS.2023.15.","short":"C. Baier, K. Chatterjee, T. Meggendorfer, J. Piribauer, in:, 48th International Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","mla":"Baier, Christel, et al. “Entropic Risk for Turn-Based Stochastic Games.” 48th International Symposium on Mathematical Foundations of Computer Science, vol. 272, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.MFCS.2023.15.","ieee":"C. Baier, K. Chatterjee, T. Meggendorfer, and J. Piribauer, “Entropic risk for turn-based stochastic games,” in 48th International Symposium on Mathematical Foundations of Computer Science, Bordeaux, France, 2023, vol. 272.","apa":"Baier, C., Chatterjee, K., Meggendorfer, T., & Piribauer, J. (2023). Entropic risk for turn-based stochastic games. In 48th International Symposium on Mathematical Foundations of Computer Science (Vol. 272). Bordeaux, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.MFCS.2023.15","ista":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. 2023. Entropic risk for turn-based stochastic games. 48th International Symposium on Mathematical Foundations of Computer Science. MFCS: Symposium on Mathematical Foundations of Computer Science, LIPIcs, vol. 272, 15.","ama":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. Entropic risk for turn-based stochastic games. In: 48th International Symposium on Mathematical Foundations of Computer Science. Vol 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.MFCS.2023.15"},"abstract":[{"text":"Entropic risk (ERisk) is an established risk measure in finance, quantifying risk by an exponential re-weighting of rewards. We study ERisk for the first time in the context of turn-based stochastic games with the total reward objective. This gives rise to an objective function that demands the control of systems in a risk-averse manner. We show that the resulting games are determined and, in particular, admit optimal memoryless deterministic strategies. This contrasts risk measures that previously have been considered in the special case of Markov decision processes and that require randomization and/or memory. We provide several results on the decidability and the computational complexity of the threshold problem, i.e. whether the optimal value of ERisk exceeds a given threshold. In the most general case, the problem is decidable subject to Shanuel’s conjecture. If all inputs are rational, the resulting threshold problem can be solved using algebraic numbers, leading to decidability via a polynomial-time reduction to the existential theory of the reals. Further restrictions on the encoding of the input allow the solution of the threshold problem in NP∩coNP. Finally, an approximation algorithm for the optimal value of ERisk is provided.","lang":"eng"}],"alternative_title":["LIPIcs"],"type":"conference","oa_version":"Published Version","file":[{"creator":"dernst","content_type":"application/pdf","file_size":826843,"access_level":"open_access","file_name":"2023_LIPIcsMFCS_Baier.pdf","success":1,"checksum":"402281b17ed669bbf149d0fdf68ac201","date_updated":"2023-10-09T09:19:11Z","date_created":"2023-10-09T09:19:11Z","file_id":"14418","relation":"main_file"}],"status":"public","ddc":["000"],"title":"Entropic risk for turn-based stochastic games","intvolume":" 272","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14417"},{"oa_version":"Submitted Version","intvolume":" 52","title":"Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12960","issue":"2","abstract":[{"lang":"eng","text":"Isomanifolds are the generalization of isosurfaces to arbitrary dimension and codimension, i.e., submanifolds of Rd defined as the zero set of some multivariate multivalued smooth function f:Rd→Rd−n, where n is the intrinsic dimension of the manifold. A natural way to approximate a smooth isomanifold M=f−1(0) is to consider its piecewise linear (PL) approximation M^\r\n based on a triangulation T of the ambient space Rd. In this paper, we describe a simple algorithm to trace isomanifolds from a given starting point. The algorithm works for arbitrary dimensions n and d, and any precision D. Our main result is that, when f (or M) has bounded complexity, the complexity of the algorithm is polynomial in d and δ=1/D (and unavoidably exponential in n). Since it is known that for δ=Ω(d2.5), M^ is O(D2)-close and isotopic to M\r\n, our algorithm produces a faithful PL-approximation of isomanifolds of bounded complexity in time polynomial in d. Combining this algorithm with dimensionality reduction techniques, the dependency on d in the size of M^ can be completely removed with high probability. We also show that the algorithm can handle isomanifolds with boundary and, more generally, isostratifolds. The algorithm for isomanifolds with boundary has been implemented and experimental results are reported, showing that it is practical and can handle cases that are far ahead of the state-of-the-art. "}],"type":"journal_article","date_published":"2023-04-30T00:00:00Z","page":"452-486","article_type":"original","citation":{"ieee":"J. D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations,” SIAM Journal on Computing, vol. 52, no. 2. Society for Industrial and Applied Mathematics, pp. 452–486, 2023.","apa":"Boissonnat, J. D., Kachanovich, S., & Wintraecken, M. (2023). Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM Journal on Computing. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/21M1412918","ista":"Boissonnat JD, Kachanovich S, Wintraecken M. 2023. Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM Journal on Computing. 52(2), 452–486.","ama":"Boissonnat JD, Kachanovich S, Wintraecken M. Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM Journal on Computing. 2023;52(2):452-486. doi:10.1137/21M1412918","chicago":"Boissonnat, Jean Daniel, Siargey Kachanovich, and Mathijs Wintraecken. “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter–Freudenthal–Kuhn Triangulations.” SIAM Journal on Computing. Society for Industrial and Applied Mathematics, 2023. https://doi.org/10.1137/21M1412918.","short":"J.D. Boissonnat, S. Kachanovich, M. Wintraecken, SIAM Journal on Computing 52 (2023) 452–486.","mla":"Boissonnat, Jean Daniel, et al. “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter–Freudenthal–Kuhn Triangulations.” SIAM Journal on Computing, vol. 52, no. 2, Society for Industrial and Applied Mathematics, 2023, pp. 452–86, doi:10.1137/21M1412918."},"publication":"SIAM Journal on Computing","article_processing_charge":"No","day":"30","scopus_import":"1","volume":52,"date_created":"2023-05-14T22:01:00Z","date_updated":"2023-10-10T07:34:35Z","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"9441"}]},"author":[{"last_name":"Boissonnat","first_name":"Jean Daniel","full_name":"Boissonnat, Jean Daniel"},{"full_name":"Kachanovich, Siargey","last_name":"Kachanovich","first_name":"Siargey"},{"full_name":"Wintraecken, Mathijs","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7472-2220","first_name":"Mathijs","last_name":"Wintraecken"}],"publisher":"Society for Industrial and Applied Mathematics","department":[{"_id":"HeEd"}],"publication_status":"published","year":"2023","acknowledgement":"The authors have received funding from the European Research Council under the European Union's ERC grant greement 339025 GUDHI (Algorithmic Foundations of Geometric Un-derstanding in Higher Dimensions). The first author was supported by the French government,through the 3IA C\\^ote d'Azur Investments in the Future project managed by the National ResearchAgency (ANR) with the reference ANR-19-P3IA-0002. The third author was supported by the Eu-ropean Union's Horizon 2020 research and innovation programme under the Marie Sk\\lodowska-Curiegrant agreement 754411 and the FWF (Austrian Science Fund) grant M 3073.","ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.1137/21M1412918","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"},{"name":"Learning and triangulating manifolds via collapses","grant_number":"M03073","_id":"fc390959-9c52-11eb-aca3-afa58bd282b2"}],"quality_controlled":"1","isi":1,"main_file_link":[{"url":"https://hal-emse.ccsd.cnrs.fr/3IA-COTEDAZUR/hal-04083489v1","open_access":"1"}],"external_id":{"isi":["001013183000012"]},"oa":1,"publication_identifier":{"issn":["0097-5397"],"eissn":["1095-7111"]},"month":"04"},{"article_number":"109693","volume":142,"date_updated":"2023-10-10T07:37:16Z","date_created":"2023-06-18T22:00:45Z","author":[{"first_name":"Lidija","last_name":"Čomić","full_name":"Čomić, Lidija"},{"full_name":"Largeteau-Skapin, Gaëlle","last_name":"Largeteau-Skapin","first_name":"Gaëlle"},{"full_name":"Zrour, Rita","last_name":"Zrour","first_name":"Rita"},{"orcid":"0000-0002-5372-7890","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","last_name":"Biswas","first_name":"Ranita","full_name":"Biswas, Ranita"},{"first_name":"Eric","last_name":"Andres","full_name":"Andres, Eric"}],"department":[{"_id":"HeEd"}],"publisher":"Elsevier","publication_status":"published","year":"2023","acknowledgement":"The first author has been partially supported by the Ministry of Science, Technological Development and Innovation of the Republic of Serbia through the project no. 451-03-47/2023-01/200156. The fourth author is funded by the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35.","publication_identifier":{"issn":["0031-3203"]},"month":"10","language":[{"iso":"eng"}],"doi":"10.1016/j.patcog.2023.109693","project":[{"call_identifier":"FWF","name":"Persistence and stability of geometric complexes","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35"},{"name":"Discretization in Geometry and Dynamics","_id":"0aa4bc98-070f-11eb-9043-e6fff9c6a316","grant_number":"I4887"}],"isi":1,"quality_controlled":"1","external_id":{"isi":["001013526000001"]},"issue":"10","abstract":[{"text":"We propose a characterization of discrete analytical spheres, planes and lines in the body-centered cubic (BCC) grid, both in the Cartesian and in the recently proposed alternative compact coordinate system, in which each integer triplet addresses some voxel in the grid. We define spheres and planes through double Diophantine inequalities and investigate their relevant topological features, such as functionality or the interrelation between the thickness of the objects and their connectivity and separation properties. We define lines as the intersection of planes. The number of the planes (up to six) is equal to the number of the pairs of faces of a BCC voxel that are parallel to the line.","lang":"eng"}],"type":"journal_article","oa_version":"None","intvolume":" 142","status":"public","title":"Discrete analytical objects in the body-centered cubic grid","_id":"13134","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2023-10-01T00:00:00Z","article_type":"original","citation":{"apa":"Čomić, L., Largeteau-Skapin, G., Zrour, R., Biswas, R., & Andres, E. (2023). Discrete analytical objects in the body-centered cubic grid. Pattern Recognition. Elsevier. https://doi.org/10.1016/j.patcog.2023.109693","ieee":"L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, and E. Andres, “Discrete analytical objects in the body-centered cubic grid,” Pattern Recognition, vol. 142, no. 10. Elsevier, 2023.","ista":"Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. 2023. Discrete analytical objects in the body-centered cubic grid. Pattern Recognition. 142(10), 109693.","ama":"Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. Discrete analytical objects in the body-centered cubic grid. Pattern Recognition. 2023;142(10). doi:10.1016/j.patcog.2023.109693","chicago":"Čomić, Lidija, Gaëlle Largeteau-Skapin, Rita Zrour, Ranita Biswas, and Eric Andres. “Discrete Analytical Objects in the Body-Centered Cubic Grid.” Pattern Recognition. Elsevier, 2023. https://doi.org/10.1016/j.patcog.2023.109693.","short":"L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, E. Andres, Pattern Recognition 142 (2023).","mla":"Čomić, Lidija, et al. “Discrete Analytical Objects in the Body-Centered Cubic Grid.” Pattern Recognition, vol. 142, no. 10, 109693, Elsevier, 2023, doi:10.1016/j.patcog.2023.109693."},"publication":"Pattern Recognition"},{"author":[{"full_name":"Bunting, Rhys","id":"91deeae8-1207-11ec-b130-c194ad5b50c6","orcid":"0000-0001-6928-074X","first_name":"Rhys","last_name":"Bunting"},{"id":"8b4b6a9f-32b0-11ee-9fa8-bbe85e26258e","orcid":"0009-0000-1457-795X","first_name":"Felix","last_name":"Wodaczek","full_name":"Wodaczek, Felix"},{"last_name":"Torabi","first_name":"Tina","full_name":"Torabi, Tina"},{"full_name":"Cheng, Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","orcid":"0000-0002-3584-9632","first_name":"Bingqing","last_name":"Cheng"}],"date_updated":"2023-10-11T08:45:10Z","date_created":"2023-07-12T09:16:40Z","volume":145,"year":"2023","acknowledgement":"B.C. acknowledges resources provided by the Cambridge Tier2 system operated by the University of Cambridge Research\r\nComputing Service funded by EPSRC Tier-2 capital grant EP/\r\nP020259/1.","pmid":1,"publication_status":"published","department":[{"_id":"MaIb"},{"_id":"BiCh"}],"publisher":"American Chemical Society","file_date_updated":"2023-07-12T10:22:04Z","doi":"10.1021/jacs.3c04030","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001020623900001"],"pmid":["37390457"]},"quality_controlled":"1","isi":1,"month":"06","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"oa_version":"Published Version","file":[{"success":1,"checksum":"e07d5323f9c0e5cbd1ad6453f29440ab","date_created":"2023-07-12T10:22:04Z","date_updated":"2023-07-12T10:22:04Z","file_id":"13219","relation":"main_file","creator":"cchlebak","content_type":"application/pdf","file_size":3155843,"access_level":"open_access","file_name":"2023_JACS_Bunting.pdf"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"13216","status":"public","ddc":["540"],"title":"Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane","intvolume":" 145","abstract":[{"lang":"eng","text":"Physical catalysts often have multiple sites where reactions can take place. One prominent example is single-atom alloys, where the reactive dopant atoms can preferentially locate in the bulk or at different sites on the surface of the nanoparticle. However, ab initio modeling of catalysts usually only considers one site of the catalyst, neglecting the effects of multiple sites. Here, nanoparticles of copper doped with single-atom rhodium or palladium are modeled for the dehydrogenation of propane. Single-atom alloy nanoparticles are simulated at 400–600 K, using machine learning potentials trained on density functional theory calculations, and then the occupation of different single-atom active sites is identified using a similarity kernel. Further, the turnover frequency for all possible sites is calculated for propane dehydrogenation to propene through microkinetic modeling using density functional theory calculations. The total turnover frequencies of the whole nanoparticle are then described from both the population and the individual turnover frequency of each site. Under operating conditions, rhodium as a dopant is found to almost exclusively occupy (111) surface sites while palladium as a dopant occupies a greater variety of facets. Undercoordinated dopant surface sites are found to tend to be more reactive for propane dehydrogenation compared to the (111) surface. It is found that considering the dynamics of the single-atom alloy nanoparticle has a profound effect on the calculated catalytic activity of single-atom alloys by several orders of magnitude."}],"issue":"27","type":"journal_article","date_published":"2023-06-30T00:00:00Z","publication":"Journal of the American Chemical Society","citation":{"short":"R. Bunting, F. Wodaczek, T. Torabi, B. Cheng, Journal of the American Chemical Society 145 (2023) 14894–14902.","mla":"Bunting, Rhys, et al. “Reactivity of Single-Atom Alloy Nanoparticles: Modeling the Dehydrogenation of Propane.” Journal of the American Chemical Society, vol. 145, no. 27, American Chemical Society, 2023, pp. 14894–902, doi:10.1021/jacs.3c04030.","chicago":"Bunting, Rhys, Felix Wodaczek, Tina Torabi, and Bingqing Cheng. “Reactivity of Single-Atom Alloy Nanoparticles: Modeling the Dehydrogenation of Propane.” Journal of the American Chemical Society. American Chemical Society, 2023. https://doi.org/10.1021/jacs.3c04030.","ama":"Bunting R, Wodaczek F, Torabi T, Cheng B. Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane. Journal of the American Chemical Society. 2023;145(27):14894-14902. doi:10.1021/jacs.3c04030","apa":"Bunting, R., Wodaczek, F., Torabi, T., & Cheng, B. (2023). Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.3c04030","ieee":"R. Bunting, F. Wodaczek, T. Torabi, and B. Cheng, “Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane,” Journal of the American Chemical Society, vol. 145, no. 27. American Chemical Society, pp. 14894–14902, 2023.","ista":"Bunting R, Wodaczek F, Torabi T, Cheng B. 2023. Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane. Journal of the American Chemical Society. 145(27), 14894–14902."},"article_type":"original","page":"14894-14902","day":"30","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"]},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","project":[{"grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Design Principles of Branching Morphogenesis"}],"doi":"10.1371/journal.pbio.3002315","language":[{"iso":"eng"}],"month":"10","publication_identifier":{"eissn":["1545-7885"]},"year":"2023","acknowledgement":"We thank the Ober group for discussion and comments on the manuscript. We are grateful to\r\nDr. F. Lemaigre for feedback on the manuscript and Dr. T. Piotrowski for invaluable support.\r\nWe thank the department of experimental medicine (AEM) in Copenhagen for expert fish\r\ncare. We gratefully acknowledge the DanStem Imaging Platform (University of Copenhagen)\r\nfor support and assistance in this work.\r\nThis work is supported by Novo Nordisk Foundation grant NNF17CC0027852 (EAO);\r\nNordisk Foundation grant NNF19OC0058327 (EAO); Novo Nordisk Foundation grant\r\nNNF17OC0031204 (PRL); https://novonordiskfonden.dk/en/; Danish National\r\nResearch Foundation grant DNRF116 (EAO and AT); https://dg.dk/en/; John and Birthe Meyer\r\nFoundation (PRL) and European Research Council (ERC) under the EU Horizon 2020 research and Innovation Programme Grant Agreement No. 851288 (EH).","publication_status":"published","department":[{"_id":"EdHa"}],"publisher":"Public Library of Science","author":[{"last_name":"Unterweger","first_name":"Iris A.","full_name":"Unterweger, Iris A."},{"full_name":"Klepstad, Julie","first_name":"Julie","last_name":"Klepstad"},{"full_name":"Hannezo, Edouard B","first_name":"Edouard B","last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561"},{"last_name":"Lundegaard","first_name":"Pia R.","full_name":"Lundegaard, Pia R."},{"full_name":"Trusina, Ala","last_name":"Trusina","first_name":"Ala"},{"full_name":"Ober, Elke A.","last_name":"Ober","first_name":"Elke A."}],"related_material":{"link":[{"relation":"software","url":"https://github.com/JulieKlepstad/LiverDevelopment"}]},"date_created":"2023-10-15T22:01:10Z","date_updated":"2023-10-16T07:25:48Z","volume":21,"article_number":"e3002315","file_date_updated":"2023-10-16T07:20:49Z","ec_funded":1,"publication":"PLoS Biology","citation":{"ama":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 2023;21(10). doi:10.1371/journal.pbio.3002315","ieee":"I. A. Unterweger, J. Klepstad, E. B. Hannezo, P. R. Lundegaard, A. Trusina, and E. A. Ober, “Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics,” PLoS Biology, vol. 21, no. 10. Public Library of Science, 2023.","apa":"Unterweger, I. A., Klepstad, J., Hannezo, E. B., Lundegaard, P. R., Trusina, A., & Ober, E. A. (2023). Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.3002315","ista":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. 2023. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 21(10), e3002315.","short":"I.A. Unterweger, J. Klepstad, E.B. Hannezo, P.R. Lundegaard, A. Trusina, E.A. Ober, PLoS Biology 21 (2023).","mla":"Unterweger, Iris A., et al. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology, vol. 21, no. 10, e3002315, Public Library of Science, 2023, doi:10.1371/journal.pbio.3002315.","chicago":"Unterweger, Iris A., Julie Klepstad, Edouard B Hannezo, Pia R. Lundegaard, Ala Trusina, and Elke A. Ober. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology. Public Library of Science, 2023. https://doi.org/10.1371/journal.pbio.3002315."},"article_type":"original","date_published":"2023-10-04T00:00:00Z","scopus_import":"1","day":"04","article_processing_charge":"No","has_accepted_license":"1","_id":"14426","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics","ddc":["570"],"intvolume":" 21","file":[{"access_level":"open_access","file_name":"2023_PloSBiology_Unterweger.pdf","file_size":6193110,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"14431","checksum":"40a2b11b41d70a0e5939f8a52b66e389","success":1,"date_created":"2023-10-16T07:20:49Z","date_updated":"2023-10-16T07:20:49Z"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"text":"To meet the physiological demands of the body, organs need to establish a functional tissue architecture and adequate size as the embryo develops to adulthood. In the liver, uni- and bipotent progenitor differentiation into hepatocytes and biliary epithelial cells (BECs), and their relative proportions, comprise the functional architecture. Yet, the contribution of individual liver progenitors at the organ level to both fates, and their specific proportion, is unresolved. Combining mathematical modelling with organ-wide, multispectral FRaeppli-NLS lineage tracing in zebrafish, we demonstrate that a precise BEC-to-hepatocyte ratio is established (i) fast, (ii) solely by heterogeneous lineage decisions from uni- and bipotent progenitors, and (iii) independent of subsequent cell type–specific proliferation. Extending lineage tracing to adulthood determined that embryonic cells undergo spatially heterogeneous three-dimensional growth associated with distinct environments. Strikingly, giant clusters comprising almost half a ventral lobe suggest lobe-specific dominant-like growth behaviours. We show substantial hepatocyte polyploidy in juveniles representing another hallmark of postembryonic liver growth. Our findings uncover heterogeneous progenitor contributions to tissue architecture-defining cell type proportions and postembryonic organ growth as key mechanisms forming the adult liver.","lang":"eng"}],"issue":"10"},{"year":"2023","publisher":"Springer Nature","department":[{"_id":"KrPi"}],"publication_status":"published","author":[{"full_name":"Dodis, Yevgeniy","last_name":"Dodis","first_name":"Yevgeniy"},{"last_name":"Ferguson","first_name":"Niels","full_name":"Ferguson, Niels"},{"full_name":"Goldin, Eli","last_name":"Goldin","first_name":"Eli"},{"full_name":"Hall, Peter","first_name":"Peter","last_name":"Hall"},{"full_name":"Pietrzak, Krzysztof Z","orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak","first_name":"Krzysztof Z"}],"volume":14082,"date_updated":"2023-10-16T08:02:11Z","date_created":"2023-10-15T22:01:11Z","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031385445"],"issn":["0302-9743"]},"month":"08","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2023/1041"}],"oa":1,"quality_controlled":"1","doi":"10.1007/978-3-031-38545-2_17","conference":{"name":"CRYPTO: Advances in Cryptology","end_date":"2023-08-24","location":"Santa Barbara, CA, United States","start_date":"2023-08-20"},"language":[{"iso":"eng"}],"type":"conference","alternative_title":["LNCS"],"abstract":[{"lang":"eng","text":"Suppose we have two hash functions h1 and h2, but we trust the security of only one of them. To mitigate this worry, we wish to build a hash combiner Ch1,h2 which is secure so long as one of the underlying hash functions is. This question has been well-studied in the regime of collision resistance. In this case, concatenating the two hash function outputs clearly works. Unfortunately, a long series of works (Boneh and Boyen, CRYPTO’06; Pietrzak, Eurocrypt’07; Pietrzak, CRYPTO’08) showed no (noticeably) shorter combiner for collision resistance is possible.\r\nIn this work, we revisit this pessimistic state of affairs, motivated by the observation that collision-resistance is insufficient for many interesting applications of cryptographic hash functions anyway. We argue the right formulation of the “hash combiner” is to build what we call random oracle (RO) combiners, utilizing stronger assumptions for stronger constructions.\r\nIndeed, we circumvent the previous lower bounds for collision resistance by constructing a simple length-preserving RO combiner C˜h1,h2Z1,Z2(M)=h1(M,Z1)⊕h2(M,Z2),where Z1,Z2\r\n are random salts of appropriate length. We show that this extra randomness is necessary for RO combiners, and indeed our construction is somewhat tight with this lower bound.\r\nOn the negative side, we show that one cannot generically apply the composition theorem to further replace “monolithic” hash functions h1 and h2 by some simpler indifferentiable construction (such as the Merkle-Damgård transformation) from smaller components, such as fixed-length compression functions. Finally, despite this issue, we directly prove collision resistance of the Merkle-Damgård variant of our combiner, where h1 and h2 are replaced by iterative Merkle-Damgård hashes applied to a fixed-length compression function. Thus, we can still subvert the concatenation barrier for collision-resistance combiners while utilizing practically small fixed-length components underneath."}],"_id":"14428","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 14082","title":"Random oracle combiners: Breaking the concatenation barrier for collision-resistance","status":"public","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"09","citation":{"chicago":"Dodis, Yevgeniy, Niels Ferguson, Eli Goldin, Peter Hall, and Krzysztof Z Pietrzak. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” In 43rd Annual International Cryptology Conference, 14082:514–46. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-38545-2_17.","mla":"Dodis, Yevgeniy, et al. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” 43rd Annual International Cryptology Conference, vol. 14082, Springer Nature, 2023, pp. 514–46, doi:10.1007/978-3-031-38545-2_17.","short":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, K.Z. Pietrzak, in:, 43rd Annual International Cryptology Conference, Springer Nature, 2023, pp. 514–546.","ista":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. 2023. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. 43rd Annual International Cryptology Conference. CRYPTO: Advances in Cryptology, LNCS, vol. 14082, 514–546.","apa":"Dodis, Y., Ferguson, N., Goldin, E., Hall, P., & Pietrzak, K. Z. (2023). Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In 43rd Annual International Cryptology Conference (Vol. 14082, pp. 514–546). Santa Barbara, CA, United States: Springer Nature. https://doi.org/10.1007/978-3-031-38545-2_17","ieee":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, and K. Z. Pietrzak, “Random oracle combiners: Breaking the concatenation barrier for collision-resistance,” in 43rd Annual International Cryptology Conference, Santa Barbara, CA, United States, 2023, vol. 14082, pp. 514–546.","ama":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In: 43rd Annual International Cryptology Conference. Vol 14082. Springer Nature; 2023:514-546. doi:10.1007/978-3-031-38545-2_17"},"publication":"43rd Annual International Cryptology Conference","page":"514-546","date_published":"2023-08-09T00:00:00Z"},{"publication_identifier":{"eisbn":["9781071631355"],"issn":["1064-3745"],"eissn":["1940-6029"],"isbn":["9781071631348"]},"month":"04","doi":"10.1007/978-1-0716-3135-5_9","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"NanoFab"},{"_id":"M-Shop"}],"external_id":{"pmid":["37106180"]},"project":[{"grant_number":"724373","_id":"25FE9508-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Cellular navigation along spatial gradients"}],"quality_controlled":"1","ec_funded":1,"place":"New York, NY","author":[{"id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1073-744X","first_name":"Alexander F","last_name":"Leithner","full_name":"Leithner, Alexander F"},{"id":"4515C308-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5145-4609","first_name":"Jack","last_name":"Merrin","full_name":"Merrin, Jack"},{"full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","last_name":"Sixt","first_name":"Michael K"}],"volume":2654,"date_updated":"2023-10-17T08:44:53Z","date_created":"2023-05-22T08:41:48Z","pmid":1,"year":"2023","acknowledgement":"A.L. was funded by an Erwin Schrödinger postdoctoral fellowship of the Austrian Science Fund (FWF, project number: J4542-B) and is an EMBO non-stipendiary postdoctoral fellow. This work was supported by a European Research Council grant ERC-CoG-72437 to M.S. We thank the Imaging & Optics facility, the Nanofabrication facility, and the Miba Machine Shop of ISTA for their excellent support.","publisher":"Springer Nature","editor":[{"last_name":"Baldari","first_name":"Cosima","full_name":"Baldari, Cosima"},{"first_name":"Michael","last_name":"Dustin","full_name":"Dustin, Michael"}],"department":[{"_id":"MiSi"},{"_id":"NanoFab"}],"publication_status":"published","article_processing_charge":"No","day":"28","scopus_import":"1","series_title":"MIMB","date_published":"2023-04-28T00:00:00Z","citation":{"ieee":"A. F. Leithner, J. Merrin, and M. K. Sixt, “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses,” in The Immune Synapse, vol. 2654, C. Baldari and M. Dustin, Eds. New York, NY: Springer Nature, 2023, pp. 137–147.","apa":"Leithner, A. F., Merrin, J., & Sixt, M. K. (2023). En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In C. Baldari & M. Dustin (Eds.), The Immune Synapse (Vol. 2654, pp. 137–147). New York, NY: Springer Nature. https://doi.org/10.1007/978-1-0716-3135-5_9","ista":"Leithner AF, Merrin J, Sixt MK. 2023.En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In: The Immune Synapse. Methods in Molecular Biology, vol. 2654, 137–147.","ama":"Leithner AF, Merrin J, Sixt MK. En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In: Baldari C, Dustin M, eds. The Immune Synapse. Vol 2654. MIMB. New York, NY: Springer Nature; 2023:137-147. doi:10.1007/978-1-0716-3135-5_9","chicago":"Leithner, Alexander F, Jack Merrin, and Michael K Sixt. “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses.” In The Immune Synapse, edited by Cosima Baldari and Michael Dustin, 2654:137–47. MIMB. New York, NY: Springer Nature, 2023. https://doi.org/10.1007/978-1-0716-3135-5_9.","short":"A.F. Leithner, J. Merrin, M.K. Sixt, in:, C. Baldari, M. Dustin (Eds.), The Immune Synapse, Springer Nature, New York, NY, 2023, pp. 137–147.","mla":"Leithner, Alexander F., et al. “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses.” The Immune Synapse, edited by Cosima Baldari and Michael Dustin, vol. 2654, Springer Nature, 2023, pp. 137–47, doi:10.1007/978-1-0716-3135-5_9."},"publication":"The Immune Synapse","page":"137-147","abstract":[{"lang":"eng","text":"Imaging of the immunological synapse (IS) between dendritic cells (DCs) and T cells in suspension is hampered by suboptimal alignment of cell-cell contacts along the vertical imaging plane. This requires optical sectioning that often results in unsatisfactory resolution in time and space. Here, we present a workflow where DCs and T cells are confined between a layer of glass and polydimethylsiloxane (PDMS) that orients the cells along one, horizontal imaging plane, allowing for fast en-face-imaging of the DC-T cell IS."}],"type":"book_chapter","alternative_title":["Methods in Molecular Biology"],"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13052","intvolume":" 2654","title":"En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses","status":"public"},{"language":[{"iso":"eng"}],"doi":"10.4064/aa210830-24-11","isi":1,"quality_controlled":"1","external_id":{"arxiv":["2103.08268"],"isi":["000912903000001"]},"oa":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2103.08268","open_access":"1"}],"month":"01","publication_identifier":{"issn":["0065-1036"],"eissn":["1730-6264"]},"date_created":"2023-01-26T21:17:04Z","date_updated":"2023-10-17T09:15:17Z","volume":207,"author":[{"full_name":"Diao, Yijie","first_name":"Yijie","last_name":"Diao","id":"7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b","orcid":"0000-0002-4989-5330"}],"publication_status":"published","publisher":"Instytut Matematyczny","department":[{"_id":"GradSch"}],"year":"2023","acknowledgement":"This article is a version the author’s master thesis at the University of Bonn. The author would like to thank his advisor Valentin Blomer for introducing the problem, and giving generous feedback and encouragement along the way, especially during the global pandemic.\r\nThe author thanks Edgar Assing for his lectures on analytic number theory. Finally, the author is grateful to the anonymous referees for their valuable time and comments.\r\n","date_published":"2023-01-09T00:00:00Z","article_type":"original","page":"1-17","publication":"Acta Arithmetica","citation":{"short":"Y. Diao, Acta Arithmetica 207 (2023) 1–17.","mla":"Diao, Yijie. “Density of the Union of Positive Diagonal Binary Quadratic Forms.” Acta Arithmetica, vol. 207, Instytut Matematyczny, 2023, pp. 1–17, doi:10.4064/aa210830-24-11.","chicago":"Diao, Yijie. “Density of the Union of Positive Diagonal Binary Quadratic Forms.” Acta Arithmetica. Instytut Matematyczny, 2023. https://doi.org/10.4064/aa210830-24-11.","ama":"Diao Y. Density of the union of positive diagonal binary quadratic forms. Acta Arithmetica. 2023;207:1-17. doi:10.4064/aa210830-24-11","apa":"Diao, Y. (2023). Density of the union of positive diagonal binary quadratic forms. Acta Arithmetica. Instytut Matematyczny. https://doi.org/10.4064/aa210830-24-11","ieee":"Y. Diao, “Density of the union of positive diagonal binary quadratic forms,” Acta Arithmetica, vol. 207. Instytut Matematyczny, pp. 1–17, 2023.","ista":"Diao Y. 2023. Density of the union of positive diagonal binary quadratic forms. Acta Arithmetica. 207, 1–17."},"day":"09","article_processing_charge":"No","keyword":["Algebra","Number Theory"],"oa_version":"Preprint","title":"Density of the union of positive diagonal binary quadratic forms","status":"public","intvolume":" 207","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12406","abstract":[{"text":"Let X be a sufficiently large positive integer. We prove that one may choose a subset S of primes with cardinality O(logX) such that a positive proportion of integers less than X can be represented by x2+py2 for at least one p∈S.","lang":"eng"}],"type":"journal_article"},{"article_number":"3784","file_date_updated":"2023-07-10T10:10:54Z","ec_funded":1,"publication_status":"published","department":[{"_id":"JoFi"}],"publisher":"Nature Research","year":"2023","acknowledgement":"This work was supported by the European Research Council under grant agreement no. 758053 (ERC StG QUNNECT), the European Union’s Horizon 2020 research and innovation program under grant agreement no. 899354 (FETopen SuperQuLAN), and the Austrian Science Fund (FWF) through BeyondC (F7105). L.Q. acknowledges generous support from the ISTFELLOW programme. W.H. is the recipient of an ISTplus postdoctoral fellowship with funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement no. 754411. G.A. is the recipient of a DOC fellowship of the Austrian Academy of Sciences at IST Austria.","pmid":1,"date_created":"2023-07-09T22:01:11Z","date_updated":"2023-10-17T11:46:12Z","volume":14,"author":[{"full_name":"Qiu, Liu","first_name":"Liu","last_name":"Qiu","id":"45e99c0d-1eb1-11eb-9b96-ed8ab2983cac","orcid":"0000-0003-4345-4267"},{"first_name":"Rishabh","last_name":"Sahu","id":"47D26E34-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6264-2162","full_name":"Sahu, Rishabh"},{"id":"29705398-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9868-2166","first_name":"William J","last_name":"Hease","full_name":"Hease, William J"},{"orcid":"0000-0003-1397-7876","id":"3770C838-F248-11E8-B48F-1D18A9856A87","last_name":"Arnold","first_name":"Georg M","full_name":"Arnold, Georg M"},{"full_name":"Fink, Johannes M","last_name":"Fink","first_name":"Johannes M","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87"}],"month":"06","publication_identifier":{"eissn":["2041-1723"]},"isi":1,"quality_controlled":"1","project":[{"call_identifier":"H2020","name":"A Fiber Optic Transceiver for Superconducting Qubits","_id":"26336814-B435-11E9-9278-68D0E5697425","grant_number":"758053"},{"grant_number":"899354","_id":"9B868D20-BA93-11EA-9121-9846C619BF3A","name":"Quantum Local Area Networks with Superconducting Qubits","call_identifier":"H2020"},{"name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits","_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"},{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"},{"_id":"2671EB66-B435-11E9-9278-68D0E5697425","name":"Coherent on-chip conversion of superconducting qubit signals from microwaves to optical frequencies"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2210.12443"],"isi":["001018100800002"],"pmid":["37355691"]},"language":[{"iso":"eng"}],"doi":"10.1038/s41467-023-39493-3","type":"journal_article","abstract":[{"text":"Recent quantum technologies have established precise quantum control of various microscopic systems using electromagnetic waves. Interfaces based on cryogenic cavity electro-optic systems are particularly promising, due to the direct interaction between microwave and optical fields in the quantum regime. Quantum optical control of superconducting microwave circuits has been precluded so far due to the weak electro-optical coupling as well as quasi-particles induced by the pump laser. Here we report the coherent control of a superconducting microwave cavity using laser pulses in a multimode electro-optical device at millikelvin temperature with near-unity cooperativity. Both the stationary and instantaneous responses of the microwave and optical modes comply with the coherent electro-optical interaction, and reveal only minuscule amount of excess back-action with an unanticipated time delay. Our demonstration enables wide ranges of applications beyond quantum transductions, from squeezing and quantum non-demolition measurements of microwave fields, to entanglement generation and hybrid quantum networks.","lang":"eng"}],"title":"Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action","ddc":["000"],"status":"public","intvolume":" 14","_id":"13200","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"content_type":"application/pdf","file_size":1349134,"creator":"alisjak","access_level":"open_access","file_name":"2023_NatureComms_Qiu.pdf","checksum":"ec7ccd2c08f90d59cab302fd0d7776a4","success":1,"date_updated":"2023-07-10T10:10:54Z","date_created":"2023-07-10T10:10:54Z","relation":"main_file","file_id":"13206"}],"oa_version":"Published Version","scopus_import":"1","day":"24","has_accepted_license":"1","article_processing_charge":"No","article_type":"original","publication":"Nature Communications","citation":{"chicago":"Qiu, Liu, Rishabh Sahu, William J Hease, Georg M Arnold, and Johannes M Fink. “Coherent Optical Control of a Superconducting Microwave Cavity via Electro-Optical Dynamical Back-Action.” Nature Communications. Nature Research, 2023. https://doi.org/10.1038/s41467-023-39493-3.","short":"L. Qiu, R. Sahu, W.J. Hease, G.M. Arnold, J.M. Fink, Nature Communications 14 (2023).","mla":"Qiu, Liu, et al. “Coherent Optical Control of a Superconducting Microwave Cavity via Electro-Optical Dynamical Back-Action.” Nature Communications, vol. 14, 3784, Nature Research, 2023, doi:10.1038/s41467-023-39493-3.","apa":"Qiu, L., Sahu, R., Hease, W. J., Arnold, G. M., & Fink, J. M. (2023). Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action. Nature Communications. Nature Research. https://doi.org/10.1038/s41467-023-39493-3","ieee":"L. Qiu, R. Sahu, W. J. Hease, G. M. Arnold, and J. M. Fink, “Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action,” Nature Communications, vol. 14. Nature Research, 2023.","ista":"Qiu L, Sahu R, Hease WJ, Arnold GM, Fink JM. 2023. Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action. Nature Communications. 14, 3784.","ama":"Qiu L, Sahu R, Hease WJ, Arnold GM, Fink JM. Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action. Nature Communications. 2023;14. doi:10.1038/s41467-023-39493-3"},"date_published":"2023-06-24T00:00:00Z"},{"publication_identifier":{"eissn":["1091-6490"]},"month":"07","project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37463204"]},"language":[{"iso":"eng"}],"doi":"10.1073/pnas.2302028120","article_number":"e2302028120","file_date_updated":"2023-07-31T07:30:48Z","publisher":"National Academy of Sciences","department":[{"_id":"MaMo"}],"publication_status":"published","pmid":1,"year":"2023","acknowledgement":"J.B. was funded by the European Union (ERC, CHORAL, project number 101039794). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. M.M. was supported by the 2019 Lopez-Loreta Prize. We would like to thank the reviewers for the insightful comments and, in particular, for suggesting the BAMP-inspired denoisers leading to AMP-AP.","volume":120,"date_updated":"2023-10-17T11:44:55Z","date_created":"2023-07-30T22:01:02Z","related_material":{"link":[{"relation":"software","url":"https://github.com/fcamilli95/Structured-PCA-"}]},"author":[{"full_name":"Barbier, Jean","first_name":"Jean","last_name":"Barbier"},{"full_name":"Camilli, Francesco","last_name":"Camilli","first_name":"Francesco"},{"full_name":"Mondelli, Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","first_name":"Marco","last_name":"Mondelli"},{"last_name":"Sáenz","first_name":"Manuel","full_name":"Sáenz, Manuel"}],"scopus_import":"1","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"25","article_type":"original","citation":{"chicago":"Barbier, Jean, Francesco Camilli, Marco Mondelli, and Manuel Sáenz. “Fundamental Limits in Structured Principal Component Analysis and How to Reach Them.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2302028120.","mla":"Barbier, Jean, et al. “Fundamental Limits in Structured Principal Component Analysis and How to Reach Them.” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 30, e2302028120, National Academy of Sciences, 2023, doi:10.1073/pnas.2302028120.","short":"J. Barbier, F. Camilli, M. Mondelli, M. Sáenz, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).","ista":"Barbier J, Camilli F, Mondelli M, Sáenz M. 2023. Fundamental limits in structured principal component analysis and how to reach them. Proceedings of the National Academy of Sciences of the United States of America. 120(30), e2302028120.","apa":"Barbier, J., Camilli, F., Mondelli, M., & Sáenz, M. (2023). Fundamental limits in structured principal component analysis and how to reach them. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2302028120","ieee":"J. Barbier, F. Camilli, M. Mondelli, and M. Sáenz, “Fundamental limits in structured principal component analysis and how to reach them,” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 30. National Academy of Sciences, 2023.","ama":"Barbier J, Camilli F, Mondelli M, Sáenz M. Fundamental limits in structured principal component analysis and how to reach them. Proceedings of the National Academy of Sciences of the United States of America. 2023;120(30). doi:10.1073/pnas.2302028120"},"publication":"Proceedings of the National Academy of Sciences of the United States of America","date_published":"2023-07-25T00:00:00Z","type":"journal_article","issue":"30","abstract":[{"lang":"eng","text":"How do statistical dependencies in measurement noise influence high-dimensional inference? To answer this, we study the paradigmatic spiked matrix model of principal components analysis (PCA), where a rank-one matrix is corrupted by additive noise. We go beyond the usual independence assumption on the noise entries, by drawing the noise from a low-order polynomial orthogonal matrix ensemble. The resulting noise correlations make the setting relevant for applications but analytically challenging. We provide characterization of the Bayes optimal limits of inference in this model. If the spike is rotation invariant, we show that standard spectral PCA is optimal. However, for more general priors, both PCA and the existing approximate message-passing algorithm (AMP) fall short of achieving the information-theoretic limits, which we compute using the replica method from statistical physics. We thus propose an AMP, inspired by the theory of adaptive Thouless–Anderson–Palmer equations, which is empirically observed to saturate the conjectured theoretical limit. This AMP comes with a rigorous state evolution analysis tracking its performance. Although we focus on specific noise distributions, our methodology can be generalized to a wide class of trace matrix ensembles at the cost of more involved expressions. Finally, despite the seemingly strong assumption of rotation-invariant noise, our theory empirically predicts algorithmic performance on real data, pointing at strong universality properties."}],"intvolume":" 120","title":"Fundamental limits in structured principal component analysis and how to reach them","status":"public","ddc":["000"],"_id":"13315","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"creator":"dernst","content_type":"application/pdf","file_size":995933,"file_name":"2023_PNAS_Barbier.pdf","access_level":"open_access","date_updated":"2023-07-31T07:30:48Z","date_created":"2023-07-31T07:30:48Z","success":1,"checksum":"1fc06228afdb3aa80cf8e7766bcf9dc5","file_id":"13323","relation":"main_file"}]},{"author":[{"last_name":"Vardi","first_name":"Ofek","full_name":"Vardi, Ofek"},{"full_name":"Maroudas-Sklare, Naama","first_name":"Naama","last_name":"Maroudas-Sklare"},{"first_name":"Yuval","last_name":"Kolodny","full_name":"Kolodny, Yuval"},{"last_name":"Volosniev","first_name":"Artem","orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem"},{"full_name":"Saragovi, Amijai","first_name":"Amijai","last_name":"Saragovi"},{"first_name":"Nir","last_name":"Galili","full_name":"Galili, Nir"},{"full_name":"Ferrera, Stav","last_name":"Ferrera","first_name":"Stav"},{"first_name":"Areg","last_name":"Ghazaryan","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9666-3543","full_name":"Ghazaryan, Areg"},{"last_name":"Yuran","first_name":"Nir","full_name":"Yuran, Nir"},{"full_name":"Affek, Hagit P.","first_name":"Hagit P.","last_name":"Affek"},{"full_name":"Luz, Boaz","first_name":"Boaz","last_name":"Luz"},{"full_name":"Goldsmith, Yonaton","first_name":"Yonaton","last_name":"Goldsmith"},{"full_name":"Keren, Nir","last_name":"Keren","first_name":"Nir"},{"full_name":"Yochelis, Shira","last_name":"Yochelis","first_name":"Shira"},{"last_name":"Halevy","first_name":"Itay","full_name":"Halevy, Itay"},{"orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","first_name":"Mikhail","full_name":"Lemeshko, Mikhail"},{"full_name":"Paltiel, Yossi","first_name":"Yossi","last_name":"Paltiel"}],"date_created":"2023-08-13T22:01:12Z","date_updated":"2023-10-17T11:45:25Z","volume":120,"acknowledgement":"N.M.-S. acknowledges the support of the Ministry of Energy, Israel, as part of the scholarship program for graduate students in the fields of energy. M.L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). Y.P. acknowledges the support of the Ministry of Innovation, Science and Technology, Israel Grant No. 1001593872. Y.P acknowledges the support of the BSF-NSF 094 Grant No. 2022503.","year":"2023","pmid":1,"publication_status":"published","department":[{"_id":"MiLe"}],"publisher":"National Academy of Sciences","file_date_updated":"2023-08-14T07:43:45Z","ec_funded":1,"article_number":"e2300828120","doi":"10.1073/pnas.2300828120","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"external_id":{"pmid":["37523549"]},"quality_controlled":"1","project":[{"name":"Angulon: physics and applications of a new quasiparticle","call_identifier":"H2020","grant_number":"801770","_id":"2688CF98-B435-11E9-9278-68D0E5697425"}],"month":"07","publication_identifier":{"eissn":["1091-6490"]},"file":[{"file_id":"14047","relation":"main_file","date_updated":"2023-08-14T07:43:45Z","date_created":"2023-08-14T07:43:45Z","success":1,"checksum":"a5ed64788a5acef9b9a300a26fa5a177","file_name":"2023_PNAS_Vardi.pdf","access_level":"open_access","creator":"dernst","content_type":"application/pdf","file_size":1003092}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14037","ddc":["530"],"title":"Nuclear spin effects in biological processes","status":"public","intvolume":" 120","abstract":[{"lang":"eng","text":"Traditionally, nuclear spin is not considered to affect biological processes. Recently, this has changed as isotopic fractionation that deviates from classical mass dependence was reported both in vitro and in vivo. In these cases, the isotopic effect correlates with the nuclear magnetic spin. Here, we show nuclear spin effects using stable oxygen isotopes (16O, 17O, and 18O) in two separate setups: an artificial dioxygen production system and biological aquaporin channels in cells. We observe that oxygen dynamics in chiral environments (in particular its transport) depend on nuclear spin, suggesting future applications for controlled isotope separation to be used, for instance, in NMR. To demonstrate the mechanism behind our findings, we formulate theoretical models based on a nuclear-spin-enhanced switch between electronic spin states. Accounting for the role of nuclear spin in biology can provide insights into the role of quantum effects in living systems and help inspire the development of future biotechnology solutions."}],"issue":"32","type":"journal_article","date_published":"2023-07-31T00:00:00Z","publication":"Proceedings of the National Academy of Sciences of the United States of America","citation":{"chicago":"Vardi, Ofek, Naama Maroudas-Sklare, Yuval Kolodny, Artem Volosniev, Amijai Saragovi, Nir Galili, Stav Ferrera, et al. “Nuclear Spin Effects in Biological Processes.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2300828120.","mla":"Vardi, Ofek, et al. “Nuclear Spin Effects in Biological Processes.” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 32, e2300828120, National Academy of Sciences, 2023, doi:10.1073/pnas.2300828120.","short":"O. Vardi, N. Maroudas-Sklare, Y. Kolodny, A. Volosniev, A. Saragovi, N. Galili, S. Ferrera, A. Ghazaryan, N. Yuran, H.P. Affek, B. Luz, Y. Goldsmith, N. Keren, S. Yochelis, I. Halevy, M. Lemeshko, Y. Paltiel, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).","ista":"Vardi O, Maroudas-Sklare N, Kolodny Y, Volosniev A, Saragovi A, Galili N, Ferrera S, Ghazaryan A, Yuran N, Affek HP, Luz B, Goldsmith Y, Keren N, Yochelis S, Halevy I, Lemeshko M, Paltiel Y. 2023. Nuclear spin effects in biological processes. Proceedings of the National Academy of Sciences of the United States of America. 120(32), e2300828120.","apa":"Vardi, O., Maroudas-Sklare, N., Kolodny, Y., Volosniev, A., Saragovi, A., Galili, N., … Paltiel, Y. (2023). Nuclear spin effects in biological processes. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2300828120","ieee":"O. Vardi et al., “Nuclear spin effects in biological processes,” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 32. National Academy of Sciences, 2023.","ama":"Vardi O, Maroudas-Sklare N, Kolodny Y, et al. Nuclear spin effects in biological processes. Proceedings of the National Academy of Sciences of the United States of America. 2023;120(32). doi:10.1073/pnas.2300828120"},"article_type":"original","day":"31","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","scopus_import":"1"},{"publication_identifier":{"eissn":["1083-589X"]},"month":"02","language":[{"iso":"eng"}],"doi":"10.1214/23-ECP516","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"},{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"isi":1,"quality_controlled":"1","external_id":{"arxiv":["2108.13694"],"isi":["000950650200005"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"ec_funded":1,"file_date_updated":"2023-02-27T09:43:27Z","volume":28,"date_updated":"2023-10-17T12:48:10Z","date_created":"2023-02-26T23:01:01Z","author":[{"orcid":"0000-0001-6892-8137","id":"D5C6A458-10C4-11EA-ABF4-A4B43DDC885E","last_name":"Dubach","first_name":"Guillaume","full_name":"Dubach, Guillaume"},{"full_name":"Erdös, László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","first_name":"László"}],"publisher":"Institute of Mathematical Statistics","department":[{"_id":"LaEr"}],"publication_status":"published","acknowledgement":"G. Dubach gratefully acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. L. Erdős is supported by ERC Advanced Grant “RMTBeyond” No. 101020331.","year":"2023","has_accepted_license":"1","article_processing_charge":"No","day":"08","scopus_import":"1","date_published":"2023-02-08T00:00:00Z","page":"1-13","article_type":"original","citation":{"ama":"Dubach G, Erdös L. Dynamics of a rank-one perturbation of a Hermitian matrix. Electronic Communications in Probability. 2023;28:1-13. doi:10.1214/23-ECP516","ista":"Dubach G, Erdös L. 2023. Dynamics of a rank-one perturbation of a Hermitian matrix. Electronic Communications in Probability. 28, 1–13.","apa":"Dubach, G., & Erdös, L. (2023). Dynamics of a rank-one perturbation of a Hermitian matrix. Electronic Communications in Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/23-ECP516","ieee":"G. Dubach and L. Erdös, “Dynamics of a rank-one perturbation of a Hermitian matrix,” Electronic Communications in Probability, vol. 28. Institute of Mathematical Statistics, pp. 1–13, 2023.","mla":"Dubach, Guillaume, and László Erdös. “Dynamics of a Rank-One Perturbation of a Hermitian Matrix.” Electronic Communications in Probability, vol. 28, Institute of Mathematical Statistics, 2023, pp. 1–13, doi:10.1214/23-ECP516.","short":"G. Dubach, L. Erdös, Electronic Communications in Probability 28 (2023) 1–13.","chicago":"Dubach, Guillaume, and László Erdös. “Dynamics of a Rank-One Perturbation of a Hermitian Matrix.” Electronic Communications in Probability. Institute of Mathematical Statistics, 2023. https://doi.org/10.1214/23-ECP516."},"publication":"Electronic Communications in Probability","abstract":[{"text":"We study the eigenvalue trajectories of a time dependent matrix Gt=H+itvv∗ for t≥0, where H is an N×N Hermitian random matrix and v is a unit vector. In particular, we establish that with high probability, an outlier can be distinguished at all times t>1+N−1/3+ϵ, for any ϵ>0. The study of this natural process combines elements of Hermitian and non-Hermitian analysis, and illustrates some aspects of the intrinsic instability of (even weakly) non-Hermitian matrices.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"relation":"main_file","file_id":"12692","date_created":"2023-02-27T09:43:27Z","date_updated":"2023-02-27T09:43:27Z","checksum":"a1c6f0a3e33688fd71309c86a9aad86e","success":1,"file_name":"2023_ElectCommProbability_Dubach.pdf","access_level":"open_access","file_size":479105,"content_type":"application/pdf","creator":"dernst"}],"intvolume":" 28","status":"public","title":"Dynamics of a rank-one perturbation of a Hermitian matrix","ddc":["510"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12683"},{"date_published":"2023-02-01T00:00:00Z","page":"447-489","article_type":"original","citation":{"ama":"Cipolloni G, Erdös L, Schröder DJ. Functional central limit theorems for Wigner matrices. Annals of Applied Probability. 2023;33(1):447-489. doi:10.1214/22-AAP1820","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Functional central limit theorems for Wigner matrices. Annals of Applied Probability. 33(1), 447–489.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Functional central limit theorems for Wigner matrices. Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/22-AAP1820","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Functional central limit theorems for Wigner matrices,” Annals of Applied Probability, vol. 33, no. 1. Institute of Mathematical Statistics, pp. 447–489, 2023.","mla":"Cipolloni, Giorgio, et al. “Functional Central Limit Theorems for Wigner Matrices.” Annals of Applied Probability, vol. 33, no. 1, Institute of Mathematical Statistics, 2023, pp. 447–89, doi:10.1214/22-AAP1820.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Annals of Applied Probability 33 (2023) 447–489.","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Functional Central Limit Theorems for Wigner Matrices.” Annals of Applied Probability. Institute of Mathematical Statistics, 2023. https://doi.org/10.1214/22-AAP1820."},"publication":"Annals of Applied Probability","article_processing_charge":"No","day":"01","scopus_import":"1","oa_version":"Preprint","intvolume":" 33","status":"public","title":"Functional central limit theorems for Wigner matrices","_id":"12761","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"1","abstract":[{"text":"We consider the fluctuations of regular functions f of a Wigner matrix W viewed as an entire matrix f (W). Going beyond the well-studied tracial mode, Trf (W), which is equivalent to the customary linear statistics of eigenvalues, we show that Trf (W)A is asymptotically normal for any nontrivial bounded deterministic matrix A. We identify three different and asymptotically independent modes of this fluctuation, corresponding to the tracial part, the traceless diagonal part and the off-diagonal part of f (W) in the entire mesoscopic regime, where we find that the off-diagonal modes fluctuate on a much smaller scale than the tracial mode. As a main motivation to study CLT in such generality on small mesoscopic scales, we determine\r\nthe fluctuations in the eigenstate thermalization hypothesis (Phys. Rev. A 43 (1991) 2046–2049), that is, prove that the eigenfunction overlaps with any deterministic matrix are asymptotically Gaussian after a small spectral averaging. Finally, in the macroscopic regime our result also generalizes (Zh. Mat. Fiz. Anal. Geom. 9 (2013) 536–581, 611, 615) to complex W and to all crossover ensembles in between. The main technical inputs are the recent\r\nmultiresolvent local laws with traceless deterministic matrices from the companion paper (Comm. Math. Phys. 388 (2021) 1005–1048).","lang":"eng"}],"type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1214/22-AAP1820","project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020"}],"quality_controlled":"1","isi":1,"oa":1,"external_id":{"isi":["000946432400015"],"arxiv":["2012.13218"]},"main_file_link":[{"url":"https://arxiv.org/abs/2012.13218","open_access":"1"}],"publication_identifier":{"issn":["1050-5164"]},"month":"02","volume":33,"date_created":"2023-03-26T22:01:08Z","date_updated":"2023-10-17T12:48:52Z","author":[{"full_name":"Cipolloni, Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4901-7992","first_name":"Giorgio","last_name":"Cipolloni"},{"last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László"},{"last_name":"Schröder","first_name":"Dominik J","orcid":"0000-0002-2904-1856","id":"408ED176-F248-11E8-B48F-1D18A9856A87","full_name":"Schröder, Dominik J"}],"publisher":"Institute of Mathematical Statistics","department":[{"_id":"LaEr"}],"publication_status":"published","acknowledgement":"The second author is partially funded by the ERC Advanced Grant “RMTBEYOND” No. 101020331. The third author is supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation.","year":"2023","ec_funded":1},{"date_published":"2023-05-01T00:00:00Z","article_type":"original","page":"1115-1203","publication":"Annals of Mathematics","citation":{"ama":"Browning TD, Boudec PL, Sawin W. The Hasse principle for random Fano hypersurfaces. Annals of Mathematics. 2023;197(3):1115-1203. doi:10.4007/annals.2023.197.3.3","ieee":"T. D. Browning, P. L. Boudec, and W. Sawin, “The Hasse principle for random Fano hypersurfaces,” Annals of Mathematics, vol. 197, no. 3. Princeton University, pp. 1115–1203, 2023.","apa":"Browning, T. D., Boudec, P. L., & Sawin, W. (2023). The Hasse principle for random Fano hypersurfaces. Annals of Mathematics. Princeton University. https://doi.org/10.4007/annals.2023.197.3.3","ista":"Browning TD, Boudec PL, Sawin W. 2023. The Hasse principle for random Fano hypersurfaces. Annals of Mathematics. 197(3), 1115–1203.","short":"T.D. Browning, P.L. Boudec, W. Sawin, Annals of Mathematics 197 (2023) 1115–1203.","mla":"Browning, Timothy D., et al. “The Hasse Principle for Random Fano Hypersurfaces.” Annals of Mathematics, vol. 197, no. 3, Princeton University, 2023, pp. 1115–203, doi:10.4007/annals.2023.197.3.3.","chicago":"Browning, Timothy D, Pierre Le Boudec, and Will Sawin. “The Hasse Principle for Random Fano Hypersurfaces.” Annals of Mathematics. Princeton University, 2023. https://doi.org/10.4007/annals.2023.197.3.3."},"day":"01","article_processing_charge":"No","oa_version":"Preprint","title":"The Hasse principle for random Fano hypersurfaces","status":"public","intvolume":" 197","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"8682","abstract":[{"lang":"eng","text":"It is known that the Brauer--Manin obstruction to the Hasse principle is vacuous for smooth Fano hypersurfaces of dimension at least 3 over any number field. Moreover, for such varieties it follows from a general conjecture of Colliot-Thélène that the Brauer--Manin obstruction to the Hasse principle should be the only one, so that the Hasse principle is expected to hold. Working over the field of rational numbers and ordering Fano hypersurfaces of fixed degree and dimension by height, we prove that almost every such hypersurface satisfies the Hasse principle provided that the dimension is at least 3. This proves a conjecture of Poonen and Voloch in every case except for cubic surfaces."}],"issue":"3","type":"journal_article","language":[{"iso":"eng"}],"doi":"10.4007/annals.2023.197.3.3","isi":1,"quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/2006.02356","open_access":"1"}],"external_id":{"arxiv":["2006.02356"],"isi":["000966611000003"]},"oa":1,"month":"05","publication_identifier":{"issn":["0003-486X"]},"date_created":"2020-10-19T14:28:50Z","date_updated":"2023-10-17T12:47:43Z","volume":197,"author":[{"full_name":"Browning, Timothy D","last_name":"Browning","first_name":"Timothy D","orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Boudec, Pierre Le","first_name":"Pierre Le","last_name":"Boudec"},{"full_name":"Sawin, Will","last_name":"Sawin","first_name":"Will"}],"related_material":{"link":[{"url":"https://ist.ac.at/en/news/when-is-necessary-sufficient/","description":"News on IST Homepage","relation":"press_release"}]},"publication_status":"published","publisher":"Princeton University","department":[{"_id":"TiBr"}],"year":"2023"},{"scopus_import":"1","day":"27","article_processing_charge":"No","has_accepted_license":"1","article_type":"original","page":"e0279838","publication":"PLoS One","citation":{"chicago":"Mckerral, Jody C., Maria Kleshnina, Vladimir Ejov, Louise Bartle, James G. Mitchell, and Jerzy A. Filar. “Empirical Parameterisation and Dynamical Analysis of the Allometric Rosenzweig-MacArthur Equations.” PLoS One. Public Library of Science, 2023. https://doi.org/10.1371/journal.pone.0279838.","mla":"Mckerral, Jody C., et al. “Empirical Parameterisation and Dynamical Analysis of the Allometric Rosenzweig-MacArthur Equations.” PLoS One, vol. 18, no. 2, Public Library of Science, 2023, p. e0279838, doi:10.1371/journal.pone.0279838.","short":"J.C. Mckerral, M. Kleshnina, V. Ejov, L. Bartle, J.G. Mitchell, J.A. Filar, PLoS One 18 (2023) e0279838.","ista":"Mckerral JC, Kleshnina M, Ejov V, Bartle L, Mitchell JG, Filar JA. 2023. Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. PLoS One. 18(2), e0279838.","apa":"Mckerral, J. C., Kleshnina, M., Ejov, V., Bartle, L., Mitchell, J. G., & Filar, J. A. (2023). Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0279838","ieee":"J. C. Mckerral, M. Kleshnina, V. Ejov, L. Bartle, J. G. Mitchell, and J. A. Filar, “Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations,” PLoS One, vol. 18, no. 2. Public Library of Science, p. e0279838, 2023.","ama":"Mckerral JC, Kleshnina M, Ejov V, Bartle L, Mitchell JG, Filar JA. Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. PLoS One. 2023;18(2):e0279838. doi:10.1371/journal.pone.0279838"},"date_published":"2023-02-27T00:00:00Z","type":"journal_article","abstract":[{"text":"Allometric settings of population dynamics models are appealing due to their parsimonious nature and broad utility when studying system level effects. Here, we parameterise the size-scaled Rosenzweig-MacArthur differential equations to eliminate prey-mass dependency, facilitating an in depth analytic study of the equations which incorporates scaling parameters’ contributions to coexistence. We define the functional response term to match empirical findings, and examine situations where metabolic theory derivations and observation diverge. The dynamical properties of the Rosenzweig-MacArthur system, encompassing the distribution of size-abundance equilibria, the scaling of period and amplitude of population cycling, and relationships between predator and prey abundances, are consistent with empirical observation. Our parameterisation is an accurate minimal model across 15+ orders of mass magnitude.","lang":"eng"}],"issue":"2","ddc":["000"],"status":"public","title":"Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations","intvolume":" 18","_id":"12706","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"file_size":1257003,"content_type":"application/pdf","creator":"cchlebak","access_level":"open_access","file_name":"2023_PLOSOne_Mckerral.pdf","checksum":"798ed5739a4117b03173e5d56e0534c9","success":1,"date_updated":"2023-03-07T10:26:45Z","date_created":"2023-03-07T10:26:45Z","relation":"main_file","file_id":"12712"}],"month":"02","publication_identifier":{"eissn":["1932-6203"]},"isi":1,"quality_controlled":"1","external_id":{"isi":["000996122900022"],"pmid":["36848357"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1371/journal.pone.0279838","file_date_updated":"2023-03-07T10:26:45Z","publication_status":"published","publisher":"Public Library of Science","department":[{"_id":"KrCh"}],"year":"2023","acknowledgement":"This research was supported by an Australian Government Research Training Program\r\n(RTP) Scholarship to JCM (https://www.dese.gov.au), and LB is supported by the Centre de\r\nrecherche sur le vieillissement Fellowship Program. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","pmid":1,"date_updated":"2023-10-17T12:53:30Z","date_created":"2023-03-05T23:01:05Z","volume":18,"author":[{"first_name":"Jody C.","last_name":"Mckerral","full_name":"Mckerral, Jody C."},{"id":"4E21749C-F248-11E8-B48F-1D18A9856A87","last_name":"Kleshnina","first_name":"Maria","full_name":"Kleshnina, Maria"},{"first_name":"Vladimir","last_name":"Ejov","full_name":"Ejov, Vladimir"},{"last_name":"Bartle","first_name":"Louise","full_name":"Bartle, Louise"},{"full_name":"Mitchell, James G.","last_name":"Mitchell","first_name":"James G."},{"full_name":"Filar, Jerzy A.","last_name":"Filar","first_name":"Jerzy A."}]},{"ec_funded":1,"file_date_updated":"2023-07-10T09:04:58Z","pmid":1,"acknowledgement":"This work was supported by The Institute of Science and Technology (IST) Austria, the European Union's Horizon 2020 Research and Innovation Program under the Marie Skłodowska-Curie Grant Agreement No. 793482 (to K.E.) and by the European Research Council (ERC) Grant Agreement No. 694539 (to R.S.). We thank Nicoleta Condruz (IST Austria, Klosterneuburg, Austria) for technical assistance with sample preparation, the Electron Microscopy Facility of IST Austria (Klosterneuburg, Austria) for technical support with EM works, Natalia Baranova (University of Vienna, Vienna, Austria) and Martin Loose (IST Austria, Klosterneuburg, Austria) for advice on liposome preparation, and Yugo Fukazawa (University of Fukui, Fukui, Japan) for comments.","year":"2023","department":[{"_id":"RySh"}],"publisher":"Society for Neuroscience","publication_status":"published","author":[{"full_name":"Eguchi, Kohgaku","last_name":"Eguchi","first_name":"Kohgaku","orcid":"0000-0002-6170-2546","id":"2B7846DC-F248-11E8-B48F-1D18A9856A87"},{"id":"3B59276A-F248-11E8-B48F-1D18A9856A87","first_name":"Elodie","last_name":"Le Monnier","full_name":"Le Monnier, Elodie"},{"full_name":"Shigemoto, Ryuichi","orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","last_name":"Shigemoto","first_name":"Ryuichi"}],"volume":43,"date_updated":"2023-10-18T07:12:47Z","date_created":"2023-07-09T22:01:12Z","publication_identifier":{"eissn":["1529-2401"],"issn":["0270-6474"]},"month":"06","external_id":{"pmid":["37160366"],"isi":["001020132100005"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"name":"Ultrastructural analysis of phosphoinositides in nerve terminals: distribution, dynamics and physiological roles in synaptic transmission","call_identifier":"H2020","grant_number":"793482","_id":"2659CC84-B435-11E9-9278-68D0E5697425"},{"grant_number":"694539","_id":"25CA28EA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"In situ analysis of single channel subunit composition in neurons: physiological implication in synaptic plasticity and behaviour"}],"quality_controlled":"1","isi":1,"doi":"10.1523/JNEUROSCI.1514-22.2023","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"EM-Fac"}],"type":"journal_article","issue":"23","abstract":[{"lang":"eng","text":"Phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2) plays an essential role in neuronal activities through interaction with various proteins involved in signaling at membranes. However, the distribution pattern of PI(4,5)P2 and the association with these proteins on the neuronal cell membranes remain elusive. In this study, we established a method for visualizing PI(4,5)P2 by SDS-digested freeze-fracture replica labeling (SDS-FRL) to investigate the quantitative nanoscale distribution of PI(4,5)P2 in cryo-fixed brain. We demonstrate that PI(4,5)P2 forms tiny clusters with a mean size of ∼1000 nm2 rather than randomly distributed in cerebellar neuronal membranes in male C57BL/6J mice. These clusters show preferential accumulation in specific membrane compartments of different cell types, in particular, in Purkinje cell (PC) spines and granule cell (GC) presynaptic active zones. Furthermore, we revealed extensive association of PI(4,5)P2 with CaV2.1 and GIRK3 across different membrane compartments, whereas its association with mGluR1α was compartment specific. These results suggest that our SDS-FRL method provides valuable insights into the physiological functions of PI(4,5)P2 in neurons."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13202","intvolume":" 43","ddc":["570"],"title":"Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons","status":"public","oa_version":"Published Version","file":[{"checksum":"70b2141870e0bf1c94fd343e18fdbc32","success":1,"date_created":"2023-07-10T09:04:58Z","date_updated":"2023-07-10T09:04:58Z","relation":"main_file","file_id":"13205","content_type":"application/pdf","file_size":7794425,"creator":"alisjak","access_level":"open_access","file_name":"2023_JN_Eguchi.pdf"}],"scopus_import":"1","article_processing_charge":"No","has_accepted_license":"1","day":"07","citation":{"chicago":"Eguchi, Kohgaku, Elodie Le Monnier, and Ryuichi Shigemoto. “Nanoscale Phosphoinositide Distribution on Cell Membranes of Mouse Cerebellar Neurons.” The Journal of Neuroscience. Society for Neuroscience, 2023. https://doi.org/10.1523/JNEUROSCI.1514-22.2023.","mla":"Eguchi, Kohgaku, et al. “Nanoscale Phosphoinositide Distribution on Cell Membranes of Mouse Cerebellar Neurons.” The Journal of Neuroscience, vol. 43, no. 23, Society for Neuroscience, 2023, pp. 4197–216, doi:10.1523/JNEUROSCI.1514-22.2023.","short":"K. Eguchi, E. Le Monnier, R. Shigemoto, The Journal of Neuroscience 43 (2023) 4197–4216.","ista":"Eguchi K, Le Monnier E, Shigemoto R. 2023. Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. 43(23), 4197–4216.","ieee":"K. Eguchi, E. Le Monnier, and R. Shigemoto, “Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons,” The Journal of Neuroscience, vol. 43, no. 23. Society for Neuroscience, pp. 4197–4216, 2023.","apa":"Eguchi, K., Le Monnier, E., & Shigemoto, R. (2023). Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.1514-22.2023","ama":"Eguchi K, Le Monnier E, Shigemoto R. Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. 2023;43(23):4197-4216. doi:10.1523/JNEUROSCI.1514-22.2023"},"publication":"The Journal of Neuroscience","page":"4197-4216","article_type":"original","date_published":"2023-06-07T00:00:00Z"},{"month":"02","publication_identifier":{"issn":["0391-173X"],"eissn":["2036-2145"]},"language":[{"iso":"eng"}],"doi":"10.2422/2036-2145.202010_018","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2007.14182"}],"external_id":{"arxiv":["2007.14182"]},"oa":1,"date_created":"2023-05-07T22:01:04Z","date_updated":"2023-10-18T06:54:30Z","volume":24,"author":[{"full_name":"Bonolis, Dante","last_name":"Bonolis","first_name":"Dante","id":"6A459894-5FDD-11E9-AF35-BB24E6697425"},{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","first_name":"Timothy D","last_name":"Browning","full_name":"Browning, Timothy D"}],"publication_status":"published","publisher":"Scuola Normale Superiore - Edizioni della Normale","department":[{"_id":"TiBr"}],"year":"2023","day":"16","article_processing_charge":"No","scopus_import":"1","date_published":"2023-02-16T00:00:00Z","article_type":"original","page":"173-204","publication":"Annali della Scuola Normale Superiore di Pisa - Classe di Scienze","citation":{"mla":"Bonolis, Dante, and Timothy D. Browning. “Uniform Bounds for Rational Points on Hyperelliptic Fibrations.” Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze, vol. 24, no. 1, Scuola Normale Superiore - Edizioni della Normale, 2023, pp. 173–204, doi:10.2422/2036-2145.202010_018.","short":"D. Bonolis, T.D. Browning, Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze 24 (2023) 173–204.","chicago":"Bonolis, Dante, and Timothy D Browning. “Uniform Bounds for Rational Points on Hyperelliptic Fibrations.” Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze. Scuola Normale Superiore - Edizioni della Normale, 2023. https://doi.org/10.2422/2036-2145.202010_018.","ama":"Bonolis D, Browning TD. Uniform bounds for rational points on hyperelliptic fibrations. Annali della Scuola Normale Superiore di Pisa - Classe di Scienze. 2023;24(1):173-204. doi:10.2422/2036-2145.202010_018","ista":"Bonolis D, Browning TD. 2023. Uniform bounds for rational points on hyperelliptic fibrations. Annali della Scuola Normale Superiore di Pisa - Classe di Scienze. 24(1), 173–204.","apa":"Bonolis, D., & Browning, T. D. (2023). Uniform bounds for rational points on hyperelliptic fibrations. Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze. Scuola Normale Superiore - Edizioni della Normale. https://doi.org/10.2422/2036-2145.202010_018","ieee":"D. Bonolis and T. D. Browning, “Uniform bounds for rational points on hyperelliptic fibrations,” Annali della Scuola Normale Superiore di Pisa - Classe di Scienze, vol. 24, no. 1. Scuola Normale Superiore - Edizioni della Normale, pp. 173–204, 2023."},"abstract":[{"lang":"eng","text":"We apply a variant of the square-sieve to produce an upper bound for the number of rational points of bounded height on a family of surfaces that admit a fibration over P1 whose general fibre is a hyperelliptic curve. The implied constant does not depend on the coefficients of the polynomial defining the surface.\r\n"}],"issue":"1","type":"journal_article","oa_version":"Preprint","title":"Uniform bounds for rational points on hyperelliptic fibrations","status":"public","intvolume":" 24","_id":"12916","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"date_created":"2023-10-12T14:13:25Z","date_updated":"2023-10-18T09:20:56Z","related_material":{"record":[{"id":"9633","status":"public","relation":"part_of_dissertation"}]},"author":[{"id":"C7610134-B532-11EA-BD9F-F5753DDC885E","first_name":"Basile J","last_name":"Confavreux","full_name":"Confavreux, Basile J"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"TiVo"}],"publication_status":"published","year":"2023","ec_funded":1,"file_date_updated":"2023-10-18T07:56:08Z","language":[{"iso":"eng"}],"degree_awarded":"PhD","supervisor":[{"orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels","first_name":"Tim P","full_name":"Vogels, Tim P"}],"doi":"10.15479/at:ista:14422","project":[{"_id":"0aacfa84-070f-11eb-9043-d7eb2c709234","grant_number":"819603","call_identifier":"H2020","name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning."}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"publication_identifier":{"issn":["2663 - 337X"]},"month":"10","file":[{"date_updated":"2023-10-12T14:54:52Z","date_created":"2023-10-12T14:53:50Z","checksum":"7f636555eae7803323df287672fd13ed","relation":"main_file","file_id":"14424","embargo":"2024-10-12","file_size":30599717,"content_type":"application/pdf","creator":"cchlebak","embargo_to":"open_access","file_name":"Confavreux_Thesis_2A.pdf","access_level":"closed"},{"relation":"source_file","file_id":"14440","checksum":"725e85946db92290a4583a0de9779e1b","date_created":"2023-10-18T07:38:34Z","date_updated":"2023-10-18T07:56:08Z","access_level":"closed","file_name":"Confavreux Thesis.zip","content_type":"application/x-zip-compressed","file_size":68406739,"creator":"cchlebak"}],"oa_version":"Published Version","ddc":["610"],"status":"public","title":"Synapseek: Meta-learning synaptic plasticity rules","_id":"14422","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","abstract":[{"text":"Animals exhibit a remarkable ability to learn and remember new behaviors, skills, and associations throughout their lifetime. These capabilities are made possible thanks to a variety of\r\nchanges in the brain throughout adulthood, regrouped under the term \"plasticity\". Some cells\r\nin the brain —neurons— and specifically changes in the connections between neurons, the\r\nsynapses, were shown to be crucial for the formation, selection, and consolidation of memories\r\nfrom past experiences. These ongoing changes of synapses across time are called synaptic\r\nplasticity. Understanding how a myriad of biochemical processes operating at individual\r\nsynapses can somehow work in concert to give rise to meaningful changes in behavior is a\r\nfascinating problem and an active area of research.\r\nHowever, the experimental search for the precise plasticity mechanisms at play in the brain\r\nis daunting, as it is difficult to control and observe synapses during learning. Theoretical\r\napproaches have thus been the default method to probe the plasticity-behavior connection. Such\r\nstudies attempt to extract unifying principles across synapses and model all observed synaptic\r\nchanges using plasticity rules: equations that govern the evolution of synaptic strengths across\r\ntime in neuronal network models. These rules can use many relevant quantities to determine\r\nthe magnitude of synaptic changes, such as the precise timings of pre- and postsynaptic\r\naction potentials, the recent neuronal activity levels, the state of neighboring synapses, etc.\r\nHowever, analytical studies rely heavily on human intuition and are forced to make simplifying\r\nassumptions about plasticity rules.\r\nIn this thesis, we aim to assist and augment human intuition in this search for plasticity rules.\r\nWe explore whether a numerical approach could automatically discover the plasticity rules\r\nthat elicit desired behaviors in large networks of interconnected neurons. This approach is\r\ndubbed meta-learning synaptic plasticity: learning plasticity rules which themselves will make\r\nneuronal networks learn how to solve a desired task. We first write all the potential plasticity\r\nmechanisms to consider using a single expression with adjustable parameters. We then optimize\r\nthese plasticity parameters using evolutionary strategies or Bayesian inference on tasks known\r\nto involve synaptic plasticity, such as familiarity detection and network stabilization.\r\nWe show that these automated approaches are powerful tools, able to complement established\r\nanalytical methods. By comprehensively screening plasticity rules at all synapse types in\r\nrealistic, spiking neuronal network models, we discover entire sets of degenerate plausible\r\nplasticity rules that reliably elicit memory-related behaviors. Our approaches allow for more\r\nrobust experimental predictions, by abstracting out the idiosyncrasies of individual plasticity\r\nrules, and provide fresh insights on synaptic plasticity in spiking network models.\r\n","lang":"eng"}],"alternative_title":["ISTA Thesis"],"type":"dissertation","date_published":"2023-10-12T00:00:00Z","page":"148","citation":{"ieee":"B. J. Confavreux, “Synapseek: Meta-learning synaptic plasticity rules,” Institute of Science and Technology Austria, 2023.","apa":"Confavreux, B. J. (2023). Synapseek: Meta-learning synaptic plasticity rules. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14422","ista":"Confavreux BJ. 2023. Synapseek: Meta-learning synaptic plasticity rules. Institute of Science and Technology Austria.","ama":"Confavreux BJ. Synapseek: Meta-learning synaptic plasticity rules. 2023. doi:10.15479/at:ista:14422","chicago":"Confavreux, Basile J. “Synapseek: Meta-Learning Synaptic Plasticity Rules.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:14422.","short":"B.J. Confavreux, Synapseek: Meta-Learning Synaptic Plasticity Rules, Institute of Science and Technology Austria, 2023.","mla":"Confavreux, Basile J. Synapseek: Meta-Learning Synaptic Plasticity Rules. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:14422."},"has_accepted_license":"1","article_processing_charge":"No","day":"12"},{"publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"RoSe"}],"publication_status":"published","year":"2023","date_created":"2023-09-28T14:23:04Z","date_updated":"2023-10-27T10:37:30Z","related_material":{"record":[{"id":"13207","status":"public","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","status":"public","id":"10850"}]},"author":[{"first_name":"Barbara","last_name":"Roos","id":"5DA90512-D80F-11E9-8994-2E2EE6697425","orcid":"0000-0002-9071-5880","full_name":"Roos, Barbara"}],"ec_funded":1,"file_date_updated":"2023-10-06T11:38:01Z","project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","grant_number":"694227","call_identifier":"H2020","name":"Analysis of quantum many-body systems"},{"name":"Mathematical Challenges in BCS Theory of Superconductivity","grant_number":"I06427","_id":"bda63fe5-d553-11ed-ba76-a16e3d2f256b"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"oa":1,"language":[{"iso":"eng"}],"supervisor":[{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","first_name":"Robert","full_name":"Seiringer, Robert"}],"degree_awarded":"PhD","doi":"10.15479/at:ista:14374","publication_identifier":{"issn":["2663 - 337X"]},"month":"09","status":"public","ddc":["515","539"],"title":"Boundary superconductivity in BCS theory","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"14374","oa_version":"Published Version","file":[{"file_id":"14398","relation":"main_file","date_updated":"2023-10-06T11:35:56Z","date_created":"2023-10-06T11:35:56Z","checksum":"ef039ffc3de2cb8dee5b14110938e9b6","file_name":"phd-thesis-draft_pdfa_acrobat.pdf","access_level":"open_access","creator":"broos","file_size":2365702,"content_type":"application/pdf"},{"creator":"broos","file_size":4691734,"content_type":"application/x-zip-compressed","access_level":"closed","file_name":"Version5.zip","checksum":"81dcac33daeefaf0111db52f41bb1fd0","date_updated":"2023-10-06T11:38:01Z","date_created":"2023-10-06T11:38:01Z","file_id":"14399","relation":"source_file"}],"alternative_title":["ISTA Thesis"],"type":"dissertation","abstract":[{"lang":"eng","text":"Superconductivity has many important applications ranging from levitating trains over qubits to MRI scanners. The phenomenon is successfully modeled by Bardeen-Cooper-Schrieffer (BCS) theory. From a mathematical perspective, BCS theory has been studied extensively for systems without boundary. However, little is known in the presence of boundaries. With the help of numerical methods physicists observed that the critical temperature may increase in the presence of a boundary. The goal of this thesis is to understand the influence of boundaries on the critical temperature in BCS theory and to give a first rigorous justification of these observations. On the way, we also study two-body Schrödinger operators on domains with boundaries and prove additional results for superconductors without boundary.\r\n\r\nBCS theory is based on a non-linear functional, where the minimizer indicates whether the system is superconducting or in the normal, non-superconducting state. By considering the Hessian of the BCS functional at the normal state, one can analyze whether the normal state is possibly a minimum of the BCS functional and estimate the critical temperature. The Hessian turns out to be a linear operator resembling a Schrödinger operator for two interacting particles, but with more complicated kinetic energy. As a first step, we study the two-body Schrödinger operator in the presence of boundaries.\r\nFor Neumann boundary conditions, we prove that the addition of a boundary can create new eigenvalues, which correspond to the two particles forming a bound state close to the boundary.\r\n\r\nSecond, we need to understand superconductivity in the translation invariant setting. While in three dimensions this has been extensively studied, there is no mathematical literature for the one and two dimensional cases. In dimensions one and two, we compute the weak coupling asymptotics of the critical temperature and the energy gap in the translation invariant setting. We also prove that their ratio is independent of the microscopic details of the model in the weak coupling limit; this property is referred to as universality.\r\n\r\nIn the third part, we study the critical temperature of superconductors in the presence of boundaries. We start by considering the one-dimensional case of a half-line with contact interaction. Then, we generalize the results to generic interactions and half-spaces in one, two and three dimensions. Finally, we compare the critical temperature of a quarter space in two dimensions to the critical temperatures of a half-space and of the full space."}],"page":"206","citation":{"chicago":"Roos, Barbara. “Boundary Superconductivity in BCS Theory.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:14374.","short":"B. Roos, Boundary Superconductivity in BCS Theory, Institute of Science and Technology Austria, 2023.","mla":"Roos, Barbara. Boundary Superconductivity in BCS Theory. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:14374.","apa":"Roos, B. (2023). Boundary superconductivity in BCS theory. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14374","ieee":"B. Roos, “Boundary superconductivity in BCS theory,” Institute of Science and Technology Austria, 2023.","ista":"Roos B. 2023. Boundary superconductivity in BCS theory. Institute of Science and Technology Austria.","ama":"Roos B. Boundary superconductivity in BCS theory. 2023. doi:10.15479/at:ista:14374"},"date_published":"2023-09-30T00:00:00Z","has_accepted_license":"1","article_processing_charge":"No","day":"30"},{"article_processing_charge":"No","has_accepted_license":"1","day":"18","date_published":"2023-05-18T00:00:00Z","page":"1507–1540","article_type":"original","citation":{"apa":"Hainzl, C., Roos, B., & Seiringer, R. (2023). Boundary superconductivity in the BCS model. Journal of Spectral Theory. EMS Press. https://doi.org/10.4171/JST/439","ieee":"C. Hainzl, B. Roos, and R. Seiringer, “Boundary superconductivity in the BCS model,” Journal of Spectral Theory, vol. 12, no. 4. EMS Press, pp. 1507–1540, 2023.","ista":"Hainzl C, Roos B, Seiringer R. 2023. Boundary superconductivity in the BCS model. Journal of Spectral Theory. 12(4), 1507–1540.","ama":"Hainzl C, Roos B, Seiringer R. Boundary superconductivity in the BCS model. Journal of Spectral Theory. 2023;12(4):1507–1540. doi:10.4171/JST/439","chicago":"Hainzl, Christian, Barbara Roos, and Robert Seiringer. “Boundary Superconductivity in the BCS Model.” Journal of Spectral Theory. EMS Press, 2023. https://doi.org/10.4171/JST/439.","short":"C. Hainzl, B. Roos, R. Seiringer, Journal of Spectral Theory 12 (2023) 1507–1540.","mla":"Hainzl, Christian, et al. “Boundary Superconductivity in the BCS Model.” Journal of Spectral Theory, vol. 12, no. 4, EMS Press, 2023, pp. 1507–1540, doi:10.4171/JST/439."},"publication":"Journal of Spectral Theory","issue":"4","abstract":[{"text":"We consider the linear BCS equation, determining the BCS critical temperature, in the presence of a boundary, where Dirichlet boundary conditions are imposed. In the one-dimensional case with point interactions, we prove that the critical temperature is strictly larger than the bulk value, at least at weak coupling. In particular, the Cooper-pair wave function localizes near the boundary, an effect that cannot be modeled by effective Neumann boundary conditions on the order parameter as often imposed in Ginzburg–Landau theory. We also show that the relative shift in critical temperature vanishes if the coupling constant either goes to zero or to infinity.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"date_updated":"2023-07-11T08:19:15Z","date_created":"2023-07-11T08:19:15Z","success":1,"checksum":"5501da33be010b5c81440438287584d5","file_id":"13208","relation":"main_file","creator":"alisjak","file_size":304619,"content_type":"application/pdf","file_name":"2023_EMS_Hainzl.pdf","access_level":"open_access"}],"intvolume":" 12","status":"public","title":"Boundary superconductivity in the BCS model","ddc":["530"],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"13207","publication_identifier":{"issn":["1664-039X"],"eissn":["1664-0403"]},"month":"05","language":[{"iso":"eng"}],"doi":"10.4171/JST/439","project":[{"grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","call_identifier":"H2020"}],"isi":1,"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2201.08090"],"isi":["000997933500008"]},"ec_funded":1,"file_date_updated":"2023-07-11T08:19:15Z","volume":12,"date_created":"2023-07-10T16:35:45Z","date_updated":"2023-10-27T10:37:29Z","related_material":{"record":[{"id":"14374","relation":"dissertation_contains","status":"public"}]},"author":[{"full_name":"Hainzl, Christian","first_name":"Christian","last_name":"Hainzl"},{"full_name":"Roos, Barbara","first_name":"Barbara","last_name":"Roos","id":"5DA90512-D80F-11E9-8994-2E2EE6697425","orcid":"0000-0002-9071-5880"},{"full_name":"Seiringer, Robert","last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"publisher":"EMS Press","department":[{"_id":"GradSch"},{"_id":"RoSe"}],"publication_status":"published","acknowledgement":"We thank Egor Babaev for encouraging us to study this problem, and Rupert Frank for many fruitful discussions. scussions. Funding. Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC grant agreement No. 694227 (Barbara Roos and Robert Seiringer) is gratefully acknowledged.","year":"2023"},{"scopus_import":"1","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"01","article_type":"original","citation":{"apa":"Barton, N. H., Etheridge, A. M., & Véber, A. (2023). The infinitesimal model with dominance. Genetics. Oxford Academic. https://doi.org/10.1093/genetics/iyad133","ieee":"N. H. Barton, A. M. Etheridge, and A. Véber, “The infinitesimal model with dominance,” Genetics, vol. 225, no. 2. Oxford Academic, 2023.","ista":"Barton NH, Etheridge AM, Véber A. 2023. The infinitesimal model with dominance. Genetics. 225(2), iyad133.","ama":"Barton NH, Etheridge AM, Véber A. The infinitesimal model with dominance. Genetics. 2023;225(2). doi:10.1093/genetics/iyad133","chicago":"Barton, Nicholas H, Alison M. Etheridge, and Amandine Véber. “The Infinitesimal Model with Dominance.” Genetics. Oxford Academic, 2023. https://doi.org/10.1093/genetics/iyad133.","short":"N.H. Barton, A.M. Etheridge, A. Véber, Genetics 225 (2023).","mla":"Barton, Nicholas H., et al. “The Infinitesimal Model with Dominance.” Genetics, vol. 225, no. 2, iyad133, Oxford Academic, 2023, doi:10.1093/genetics/iyad133."},"publication":"Genetics","date_published":"2023-10-01T00:00:00Z","type":"journal_article","issue":"2","abstract":[{"text":"The classical infinitesimal model is a simple and robust model for the inheritance of quantitative traits. In this model, a quantitative trait is expressed as the sum of a genetic and an environmental component, and the genetic component of offspring traits within a family follows a normal distribution around the average of the parents’ trait values, and has a variance that is independent of the parental traits. In previous work, we showed that when trait values are determined by the sum of a large number of additive Mendelian factors, each of small effect, one can justify the infinitesimal model as a limit of Mendelian inheritance. In this paper, we show that this result extends to include dominance. We define the model in terms of classical quantities of quantitative genetics, before justifying it as a limit of Mendelian inheritance as the number, M, of underlying loci tends to infinity. As in the additive case, the multivariate normal distribution of trait values across the pedigree can be expressed in terms of variance components in an ancestral population and probabilities of identity by descent determined by the pedigree. Now, with just first-order dominance effects, we require two-, three-, and four-way identities. We also show that, even if we condition on parental trait values, the “shared” and “residual” components of trait values within each family will be asymptotically normally distributed as the number of loci tends to infinity, with an error of order 1/M−−√. We illustrate our results with some numerical examples.","lang":"eng"}],"intvolume":" 225","status":"public","title":"The infinitesimal model with dominance","ddc":["570"],"_id":"14452","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"file_size":1439032,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2023_Genetics_Barton.pdf","checksum":"3f65b1fbe813e2f4dbb5d2b5e891844a","success":1,"date_updated":"2023-10-30T12:57:53Z","date_created":"2023-10-30T12:57:53Z","relation":"main_file","file_id":"14469"}],"publication_identifier":{"issn":["0016-6731"],"eissn":["1943-2631"]},"month":"10","project":[{"call_identifier":"FP7","name":"Limits to selection in biology and in evolutionary computation","grant_number":"250152","_id":"25B07788-B435-11E9-9278-68D0E5697425"},{"_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00","grant_number":"101055327","name":"Understanding the evolution of continuous genomes"}],"quality_controlled":"1","external_id":{"arxiv":["2211.03515"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1093/genetics/iyad133","article_number":"iyad133","ec_funded":1,"file_date_updated":"2023-10-30T12:57:53Z","publisher":"Oxford Academic","department":[{"_id":"NiBa"}],"publication_status":"published","acknowledgement":"NHB was supported in part by ERC Grants 250152 and 101055327. AV was partly supported by the chaire Modélisation Mathématique et Biodiversité of Veolia Environment—Ecole Polytechnique—Museum National d’Histoire Naturelle—Fondation X.","year":"2023","volume":225,"date_updated":"2023-10-30T13:04:11Z","date_created":"2023-10-29T23:01:15Z","related_material":{"record":[{"relation":"research_data","status":"public","id":"12949"}]},"author":[{"last_name":"Barton","first_name":"Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","full_name":"Barton, Nicholas H"},{"first_name":"Alison M.","last_name":"Etheridge","full_name":"Etheridge, Alison M."},{"full_name":"Véber, Amandine","last_name":"Véber","first_name":"Amandine"}]},{"has_accepted_license":"1","article_processing_charge":"No","day":"13","month":"05","keyword":["Quantitative genetics","infinitesimal model"],"date_published":"2023-05-13T00:00:00Z","doi":"10.15479/AT:ISTA:12949","citation":{"ista":"Barton NH. 2023. The infinitesimal model with dominance, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12949.","apa":"Barton, N. H. (2023). The infinitesimal model with dominance. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12949","ieee":"N. H. Barton, “The infinitesimal model with dominance.” Institute of Science and Technology Austria, 2023.","ama":"Barton NH. The infinitesimal model with dominance. 2023. doi:10.15479/AT:ISTA:12949","chicago":"Barton, Nicholas H. “The Infinitesimal Model with Dominance.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12949.","mla":"Barton, Nicholas H. The Infinitesimal Model with Dominance. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12949.","short":"N.H. Barton, (2023)."},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"name":"Understanding the evolution of continuous genomes","grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00"}],"abstract":[{"lang":"eng","text":"The classical infinitesimal model is a simple and robust model for the inheritance of quantitative traits. In this model, a quantitative trait is expressed as the sum of a genetic and a non-genetic (environmental) component and the genetic component of offspring traits within a family follows a normal distribution around the average of the parents’ trait values, and has a variance that is independent of the trait values of the parents. Although the trait distribution across the whole population can be far from normal, the trait distributions within families are normally distributed with a variance-covariance matrix that is determined entirely by that in the ancestral population and the probabilities of identity determined by the pedigree. Moreover, conditioning on some of the trait values within the pedigree has predictable effects on the mean and variance within and between families. In previous work, Barton et al. (2017), we showed that when trait values are determined by the sum of a large number of Mendelian factors, each of small effect, one can justify the infinitesimal model as limit of Mendelian inheritance. It was also shown that under some forms of epistasis, trait values within a family are still normally distributed."}],"file_date_updated":"2023-05-16T04:09:08Z","type":"research_data","contributor":[{"first_name":"Amandine","contributor_type":"researcher","last_name":"Veber"},{"last_name":"Etheridge","contributor_type":"researcher","first_name":"Alison"}],"related_material":{"record":[{"id":"14452","status":"public","relation":"used_in_publication"}]},"author":[{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H"}],"file":[{"file_name":"Neutral identities 16th Jan","access_level":"open_access","creator":"nbarton","file_size":13662,"content_type":"application/octet-stream","file_id":"12950","relation":"main_file","date_updated":"2023-05-13T09:36:33Z","date_created":"2023-05-13T09:36:33Z","success":1,"checksum":"b0ce7d4b1ee7e7265430ceed36fc3336"},{"date_created":"2023-05-13T09:38:17Z","date_updated":"2023-05-13T09:38:17Z","success":1,"checksum":"ad5035ad4f7d3b150a252c79884f6a83","file_id":"12951","relation":"main_file","creator":"nbarton","content_type":"application/octet-stream","file_size":181619928,"file_name":"p, zA, zD, N=30 neutral III","access_level":"open_access"},{"creator":"nbarton","file_size":605902074,"content_type":"application/octet-stream","file_name":"p, zA, zD, N=30 neutral IV","access_level":"open_access","date_updated":"2023-05-13T09:41:59Z","date_created":"2023-05-13T09:41:59Z","success":1,"checksum":"62182a1de796256edd6f4223704312ef","file_id":"12952","relation":"main_file"},{"creator":"nbarton","content_type":"application/octet-stream","file_size":1018238746,"file_name":"p, zA, zD, N=30 selected k=5","access_level":"open_access","date_created":"2023-05-13T09:46:52Z","date_updated":"2023-05-13T09:46:52Z","success":1,"checksum":"af775dda5c4f6859cb1e5a81ec40a667","file_id":"12953","relation":"main_file"},{"creator":"nbarton","file_size":3197160,"content_type":"application/octet-stream","access_level":"open_access","file_name":"Pairwise F N=30 neutral II","success":1,"checksum":"af26f3394c387d3ada14b434cd68b1e5","date_updated":"2023-05-13T09:42:05Z","date_created":"2023-05-13T09:42:05Z","file_id":"12954","relation":"main_file"},{"file_id":"12955","relation":"main_file","date_updated":"2023-05-13T09:42:06Z","date_created":"2023-05-13T09:42:06Z","success":1,"checksum":"d5da7dc0e7282dd48222e26d12e34220","file_name":"Pedigrees N=30 neutral II","access_level":"open_access","creator":"nbarton","content_type":"application/octet-stream","file_size":55492},{"relation":"main_file","file_id":"12956","checksum":"00f386d80677590e29f6235d49cba58d","success":1,"date_updated":"2023-05-13T09:46:06Z","date_created":"2023-05-13T09:46:06Z","access_level":"open_access","file_name":"selected reps N=30 selected k=1,2 300 reps III","content_type":"application/octet-stream","file_size":474003467,"creator":"nbarton"},{"success":1,"checksum":"658cef3eaea6136a4d24da4f074191d7","date_created":"2023-05-13T09:46:08Z","date_updated":"2023-05-13T09:46:08Z","file_id":"12957","relation":"main_file","creator":"nbarton","file_size":121209,"content_type":"application/octet-stream","access_level":"open_access","file_name":"Algorithm for caclulating identities.nb"},{"checksum":"db9b6dddd7a596d974e25f5e78f5c45c","success":1,"date_created":"2023-05-13T09:46:08Z","date_updated":"2023-05-13T09:46:08Z","relation":"main_file","file_id":"12958","content_type":"application/octet-stream","file_size":1803898,"creator":"nbarton","access_level":"open_access","file_name":"Infinitesimal with dominance.nb"},{"access_level":"open_access","file_name":"ReadMe.txt","content_type":"text/plain","file_size":990,"creator":"nbarton","relation":"main_file","file_id":"12967","checksum":"91f80a9fb58cae8eef2d8bf59fe30189","success":1,"date_created":"2023-05-16T04:09:08Z","date_updated":"2023-05-16T04:09:08Z"}],"oa_version":"Published Version","date_updated":"2023-10-30T13:04:11Z","date_created":"2023-05-13T09:49:09Z","_id":"12949","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Institute of Science and Technology Austria","department":[{"_id":"NiBa"}],"status":"public","title":"The infinitesimal model with dominance","ddc":["576"]},{"intvolume":" 202","status":"public","title":"Quantized distributed training of large models with convergence guarantees","_id":"14461","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","alternative_title":["PMLR"],"type":"conference","abstract":[{"lang":"eng","text":"Communication-reduction techniques are a popular way to improve scalability in data-parallel training of deep neural networks (DNNs). The recent emergence of large language models such as GPT has created the need for new approaches to exploit data-parallelism. Among these, fully-sharded data parallel (FSDP) training is highly popular, yet it still encounters scalability bottlenecks. One reason is that applying compression techniques to FSDP is challenging: as the vast majority of the communication involves the model’s weights, direct compression alters convergence and leads to accuracy loss. We present QSDP, a variant of FSDP which supports both gradient and weight quantization with theoretical guarantees, is simple to implement and has essentially no overheads. To derive QSDP we prove that a natural modification of SGD achieves convergence even when we only maintain quantized weights, and thus the domain over which we train consists of quantized points and is, therefore, highly non-convex. We validate this approach by training GPT-family models with up to 1.3 billion parameters on a multi-node cluster. Experiments show that QSDP preserves model accuracy, while completely removing the communication bottlenecks of FSDP, providing end-to-end speedups of up to 2.2x."}],"page":"24020-24044","citation":{"chicago":"Markov, Ilia, Adrian Vladu, Qi Guo, and Dan-Adrian Alistarh. “Quantized Distributed Training of Large Models with Convergence Guarantees.” In Proceedings of the 40th International Conference on Machine Learning, 202:24020–44. ML Research Press, 2023.","short":"I. Markov, A. Vladu, Q. Guo, D.-A. Alistarh, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 24020–24044.","mla":"Markov, Ilia, et al. “Quantized Distributed Training of Large Models with Convergence Guarantees.” Proceedings of the 40th International Conference on Machine Learning, vol. 202, ML Research Press, 2023, pp. 24020–44.","ieee":"I. Markov, A. Vladu, Q. Guo, and D.-A. Alistarh, “Quantized distributed training of large models with convergence guarantees,” in Proceedings of the 40th International Conference on Machine Learning, Honolulu, Hawaii, HI, United States, 2023, vol. 202, pp. 24020–24044.","apa":"Markov, I., Vladu, A., Guo, Q., & Alistarh, D.-A. (2023). Quantized distributed training of large models with convergence guarantees. In Proceedings of the 40th International Conference on Machine Learning (Vol. 202, pp. 24020–24044). Honolulu, Hawaii, HI, United States: ML Research Press.","ista":"Markov I, Vladu A, Guo Q, Alistarh D-A. 2023. Quantized distributed training of large models with convergence guarantees. Proceedings of the 40th International Conference on Machine Learning. ICML: International Conference on Machine Learning, PMLR, vol. 202, 24020–24044.","ama":"Markov I, Vladu A, Guo Q, Alistarh D-A. Quantized distributed training of large models with convergence guarantees. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:24020-24044."},"publication":"Proceedings of the 40th International Conference on Machine Learning","date_published":"2023-07-30T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"30","department":[{"_id":"DaAl"}],"publisher":"ML Research Press","publication_status":"published","year":"2023","acknowledgement":"The authors gratefully acknowledge funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 805223 ScaleML), as well as experimental support from the IST Austria IT department, in particular Stefano Elefante, Andrei Hornoiu, and Alois Schloegl. AV acknowledges the support of the French Agence Nationale de la Recherche (ANR), under grant ANR-21-CE48-0016 (project COMCOPT), the support of Fondation Hadamard with a PRMO grant, and the support of CNRS with a CoopIntEER IEA grant (project ALFRED).","volume":202,"date_created":"2023-10-29T23:01:17Z","date_updated":"2023-10-31T09:40:45Z","author":[{"full_name":"Markov, Ilia","first_name":"Ilia","last_name":"Markov","id":"D0CF4148-C985-11E9-8066-0BDEE5697425"},{"full_name":"Vladu, Adrian","first_name":"Adrian","last_name":"Vladu"},{"first_name":"Qi","last_name":"Guo","full_name":"Guo, Qi"},{"last_name":"Alistarh","first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian"}],"ec_funded":1,"project":[{"name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020","grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","external_id":{"arxiv":["2302.02390"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2302.02390"}],"language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"conference":{"name":"ICML: International Conference on Machine Learning","end_date":"2023-07-29","location":"Honolulu, Hawaii, HI, United States","start_date":"2023-07-23"},"publication_identifier":{"eissn":["2640-3498"]},"month":"07"},{"citation":{"chicago":"Fichtenberger, Hendrik, Monika H Henzinger, and Jalaj Upadhyay. “Constant Matters: Fine-Grained Error Bound on Differentially Private Continual Observation.” In Proceedings of the 40th International Conference on Machine Learning, 202:10072–92. ML Research Press, 2023.","short":"H. Fichtenberger, M.H. Henzinger, J. Upadhyay, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 10072–10092.","mla":"Fichtenberger, Hendrik, et al. “Constant Matters: Fine-Grained Error Bound on Differentially Private Continual Observation.” Proceedings of the 40th International Conference on Machine Learning, vol. 202, ML Research Press, 2023, pp. 10072–92.","apa":"Fichtenberger, H., Henzinger, M. H., & Upadhyay, J. (2023). Constant matters: Fine-grained error bound on differentially private continual observation. In Proceedings of the 40th International Conference on Machine Learning (Vol. 202, pp. 10072–10092). Honolulu, Hawaii, HI, United States: ML Research Press.","ieee":"H. Fichtenberger, M. H. Henzinger, and J. Upadhyay, “Constant matters: Fine-grained error bound on differentially private continual observation,” in Proceedings of the 40th International Conference on Machine Learning, Honolulu, Hawaii, HI, United States, 2023, vol. 202, pp. 10072–10092.","ista":"Fichtenberger H, Henzinger MH, Upadhyay J. 2023. Constant matters: Fine-grained error bound on differentially private continual observation. Proceedings of the 40th International Conference on Machine Learning. ICML: International Conference on Machine Learning, PMLR, vol. 202, 10072–10092.","ama":"Fichtenberger H, Henzinger MH, Upadhyay J. Constant matters: Fine-grained error bound on differentially private continual observation. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:10072-10092."},"publication":"Proceedings of the 40th International Conference on Machine Learning","page":"10072-10092","date_published":"2023-07-30T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"30","_id":"14462","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 202","status":"public","title":"Constant matters: Fine-grained error bound on differentially private continual observation","oa_version":"Published Version","type":"conference","alternative_title":["PMLR"],"abstract":[{"lang":"eng","text":"We study fine-grained error bounds for differentially private algorithms for counting under continual observation. Our main insight is that the matrix mechanism when using lower-triangular matrices can be used in the continual observation model. More specifically, we give an explicit factorization for the counting matrix Mcount and upper bound the error explicitly. We also give a fine-grained analysis, specifying the exact constant in the upper bound. Our analysis is based on upper and lower bounds of the completely bounded norm (cb-norm) of Mcount\r\n. Along the way, we improve the best-known bound of 28 years by Mathias (SIAM Journal on Matrix Analysis and Applications, 1993) on the cb-norm of Mcount for a large range of the dimension of Mcount. Furthermore, we are the first to give concrete error bounds for various problems under continual observation such as binary counting, maintaining a histogram, releasing an approximately cut-preserving synthetic graph, many graph-based statistics, and substring and episode counting. Finally, we note that our result can be used to get a fine-grained error bound for non-interactive local learning and the first lower bounds on the additive error for (ϵ,δ)-differentially-private counting under continual observation. Subsequent to this work, Henzinger et al. (SODA, 2023) showed that our factorization also achieves fine-grained mean-squared error."}],"oa":1,"main_file_link":[{"url":"https://proceedings.mlr.press/v202/fichtenberger23a/fichtenberger23a.pdf","open_access":"1"}],"project":[{"name":"The design and evaluation of modern fully dynamic data structures","call_identifier":"H2020","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","grant_number":"101019564"},{"_id":"34def286-11ca-11ed-8bc3-da5948e1613c","grant_number":"Z00422","name":"Wittgenstein Award - Monika Henzinger"},{"grant_number":"P33775 ","_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","name":"Fast Algorithms for a Reactive Network Layer"}],"quality_controlled":"1","conference":{"end_date":"2023-07-29","start_date":"2023-07-23","location":"Honolulu, Hawaii, HI, United States","name":"ICML: International Conference on Machine Learning"},"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["2640-3498"]},"month":"07","year":"2023","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No.\r\n101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)” and from the Austrian Science Fund (FWF) project Z 422-N, and project “Fast Algorithms for a Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the netidee SCIENCE Stiftung, 2020–2024. 2020–2024. JU’s research was funded by Decanal Research Grant. A part of this work was done when JU was visiting Indian Statistical Institute, Delhi. The authors would like to thank Rajat Bhatia, Aleksandar Nikolov, Shanta Laisharam, Vern Paulsen, Ryan Rogers, Abhradeep Thakurta, and Sarvagya Upadhyay for useful discussions.","publisher":"ML Research Press","department":[{"_id":"MoHe"}],"publication_status":"published","author":[{"last_name":"Fichtenberger","first_name":"Hendrik","full_name":"Fichtenberger, Hendrik"},{"last_name":"Henzinger","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","full_name":"Henzinger, Monika H"},{"last_name":"Upadhyay","first_name":"Jalaj","full_name":"Upadhyay, Jalaj"}],"volume":202,"date_created":"2023-10-29T23:01:17Z","date_updated":"2023-10-31T09:54:05Z","ec_funded":1},{"publication":"Proceedings of the 40th International Conference on Machine Learning","citation":{"chicago":"Shevchenko, Aleksandr, Kevin Kögler, Hamed Hassani, and Marco Mondelli. “Fundamental Limits of Two-Layer Autoencoders, and Achieving Them with Gradient Methods.” In Proceedings of the 40th International Conference on Machine Learning, 202:31151–209. ML Research Press, 2023.","short":"A. Shevchenko, K. Kögler, H. Hassani, M. Mondelli, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 31151–31209.","mla":"Shevchenko, Aleksandr, et al. “Fundamental Limits of Two-Layer Autoencoders, and Achieving Them with Gradient Methods.” Proceedings of the 40th International Conference on Machine Learning, vol. 202, ML Research Press, 2023, pp. 31151–209.","apa":"Shevchenko, A., Kögler, K., Hassani, H., & Mondelli, M. (2023). Fundamental limits of two-layer autoencoders, and achieving them with gradient methods. In Proceedings of the 40th International Conference on Machine Learning (Vol. 202, pp. 31151–31209). Honolulu, Hawaii, HI, United States: ML Research Press.","ieee":"A. Shevchenko, K. Kögler, H. Hassani, and M. Mondelli, “Fundamental limits of two-layer autoencoders, and achieving them with gradient methods,” in Proceedings of the 40th International Conference on Machine Learning, Honolulu, Hawaii, HI, United States, 2023, vol. 202, pp. 31151–31209.","ista":"Shevchenko A, Kögler K, Hassani H, Mondelli M. 2023. Fundamental limits of two-layer autoencoders, and achieving them with gradient methods. Proceedings of the 40th International Conference on Machine Learning. ICML: International Conference on Machine Learning, PMLR, vol. 202, 31151–31209.","ama":"Shevchenko A, Kögler K, Hassani H, Mondelli M. Fundamental limits of two-layer autoencoders, and achieving them with gradient methods. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:31151-31209."},"page":"31151-31209","date_published":"2023-07-30T00:00:00Z","scopus_import":"1","day":"30","article_processing_charge":"No","_id":"14459","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Fundamental limits of two-layer autoencoders, and achieving them with gradient methods","intvolume":" 202","oa_version":"Preprint","type":"conference","alternative_title":["PMLR"],"abstract":[{"lang":"eng","text":"Autoencoders are a popular model in many branches of machine learning and lossy data compression. However, their fundamental limits, the performance of gradient methods and the features learnt during optimization remain poorly understood, even in the two-layer setting. In fact, earlier work has considered either linear autoencoders or specific training regimes (leading to vanishing or diverging compression rates). Our paper addresses this gap by focusing on non-linear two-layer autoencoders trained in the challenging proportional regime in which the input dimension scales linearly with the size of the representation. Our results characterize the minimizers of the population risk, and show that such minimizers are achieved by gradient methods; their structure is also unveiled, thus leading to a concise description of the features obtained via training. For the special case of a sign activation function, our analysis establishes the fundamental limits for the lossy compression of Gaussian sources via (shallow) autoencoders. Finally, while the results are proved for Gaussian data, numerical simulations on standard datasets display the universality of the theoretical predictions."}],"external_id":{"arxiv":["2212.13468"]},"oa":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2212.13468","open_access":"1"}],"quality_controlled":"1","project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"conference":{"name":"ICML: International Conference on Machine Learning","end_date":"2023-07-29","location":"Honolulu, Hawaii, HI, United States","start_date":"2023-07-23"},"language":[{"iso":"eng"}],"month":"07","publication_identifier":{"eissn":["2640-3498"]},"acknowledgement":"Aleksandr Shevchenko, Kevin Kogler and Marco Mondelli are supported by the 2019 Lopez-Loreta Prize. Hamed Hassani acknowledges the support by the NSF CIF award (1910056) and the NSF Institute for CORE Emerging Methods in Data Science (EnCORE).","year":"2023","publication_status":"published","department":[{"_id":"MaMo"},{"_id":"DaAl"}],"publisher":"ML Research Press","author":[{"last_name":"Shevchenko","first_name":"Aleksandr","id":"F2B06EC2-C99E-11E9-89F0-752EE6697425","full_name":"Shevchenko, Aleksandr"},{"id":"94ec913c-dc85-11ea-9058-e5051ab2428b","last_name":"Kögler","first_name":"Kevin","full_name":"Kögler, Kevin"},{"full_name":"Hassani, Hamed","last_name":"Hassani","first_name":"Hamed"},{"full_name":"Mondelli, Marco","first_name":"Marco","last_name":"Mondelli","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020"}],"date_created":"2023-10-29T23:01:17Z","date_updated":"2023-10-31T08:52:28Z","volume":202},{"date_published":"2023-07-30T00:00:00Z","publication":"Proceedings of the 40th International Conference on Machine Learning","citation":{"ama":"Nikdan M, Pegolotti T, Iofinova EB, Kurtic E, Alistarh D-A. SparseProp: Efficient sparse backpropagation for faster training of neural networks at the edge. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:26215-26227.","ista":"Nikdan M, Pegolotti T, Iofinova EB, Kurtic E, Alistarh D-A. 2023. SparseProp: Efficient sparse backpropagation for faster training of neural networks at the edge. Proceedings of the 40th International Conference on Machine Learning. ICML: International Conference on Machine Learning, PMLR, vol. 202, 26215–26227.","apa":"Nikdan, M., Pegolotti, T., Iofinova, E. B., Kurtic, E., & Alistarh, D.-A. (2023). SparseProp: Efficient sparse backpropagation for faster training of neural networks at the edge. In Proceedings of the 40th International Conference on Machine Learning (Vol. 202, pp. 26215–26227). Honolulu, Hawaii, HI, United States: ML Research Press.","ieee":"M. Nikdan, T. Pegolotti, E. B. Iofinova, E. Kurtic, and D.-A. Alistarh, “SparseProp: Efficient sparse backpropagation for faster training of neural networks at the edge,” in Proceedings of the 40th International Conference on Machine Learning, Honolulu, Hawaii, HI, United States, 2023, vol. 202, pp. 26215–26227.","mla":"Nikdan, Mahdi, et al. “SparseProp: Efficient Sparse Backpropagation for Faster Training of Neural Networks at the Edge.” Proceedings of the 40th International Conference on Machine Learning, vol. 202, ML Research Press, 2023, pp. 26215–27.","short":"M. Nikdan, T. Pegolotti, E.B. Iofinova, E. Kurtic, D.-A. Alistarh, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 26215–26227.","chicago":"Nikdan, Mahdi, Tommaso Pegolotti, Eugenia B Iofinova, Eldar Kurtic, and Dan-Adrian Alistarh. “SparseProp: Efficient Sparse Backpropagation for Faster Training of Neural Networks at the Edge.” In Proceedings of the 40th International Conference on Machine Learning, 202:26215–27. ML Research Press, 2023."},"page":"26215-26227","day":"30","article_processing_charge":"No","scopus_import":"1","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14460","title":"SparseProp: Efficient sparse backpropagation for faster training of neural networks at the edge","status":"public","intvolume":" 202","abstract":[{"text":"We provide an efficient implementation of the backpropagation algorithm, specialized to the case where the weights of the neural network being trained are sparse. Our algorithm is general, as it applies to arbitrary (unstructured) sparsity and common layer types (e.g., convolutional or linear). We provide a fast vectorized implementation on commodity CPUs, and show that it can yield speedups in end-to-end runtime experiments, both in transfer learning using already-sparsified networks, and in training sparse networks from scratch. Thus, our results provide the first support for sparse training on commodity hardware.","lang":"eng"}],"type":"conference","alternative_title":["PMLR"],"conference":{"name":"ICML: International Conference on Machine Learning","end_date":"2023-07-29","location":"Honolulu, Hawaii, HI, United States","start_date":"2023-07-23"},"language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2302.04852"}],"external_id":{"arxiv":["2302.04852"]},"quality_controlled":"1","project":[{"grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425","name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020"}],"month":"07","publication_identifier":{"eissn":["2640-3498"]},"author":[{"full_name":"Nikdan, Mahdi","id":"66374281-f394-11eb-9cf6-869147deecc0","first_name":"Mahdi","last_name":"Nikdan"},{"first_name":"Tommaso","last_name":"Pegolotti","full_name":"Pegolotti, Tommaso"},{"full_name":"Iofinova, Eugenia B","first_name":"Eugenia B","last_name":"Iofinova","id":"f9a17499-f6e0-11ea-865d-fdf9a3f77117","orcid":"0000-0002-7778-3221"},{"full_name":"Kurtic, Eldar","last_name":"Kurtic","first_name":"Eldar","id":"47beb3a5-07b5-11eb-9b87-b108ec578218"},{"id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X","first_name":"Dan-Adrian","last_name":"Alistarh","full_name":"Alistarh, Dan-Adrian"}],"date_updated":"2023-10-31T09:33:51Z","date_created":"2023-10-29T23:01:17Z","volume":202,"year":"2023","acknowledgement":"We would like to thank Elias Frantar for his valuable assistance and support at the outset of this project, and the anonymous ICML and SNN reviewers for very constructive feedback. EI was supported in part by the FWF DK VGSCO, grant agreement number W1260-N35. DA acknowledges generous ERC support, via Starting Grant 805223 ScaleML. ","publication_status":"published","publisher":"ML Research Press","department":[{"_id":"DaAl"}],"ec_funded":1},{"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14457","status":"public","title":"Stronger lower bounds for leakage-resilient secret sharing","intvolume":" 14168","abstract":[{"text":"Threshold secret sharing allows a dealer to split a secret s into n shares, such that any t shares allow for reconstructing s, but no t-1 shares reveal any information about s. Leakage-resilient secret sharing requires that the secret remains hidden, even when an adversary additionally obtains a limited amount of leakage from every share. Benhamouda et al. (CRYPTO’18) proved that Shamir’s secret sharing scheme is one bit leakage-resilient for reconstruction threshold t≥0.85n and conjectured that the same holds for t = c.n for any constant 0≤c≤1. Nielsen and Simkin (EUROCRYPT’20) showed that this is the best one can hope for by proving that Shamir’s scheme is not secure against one-bit leakage when t0c.n/log(n).\r\nIn this work, we strengthen the lower bound of Nielsen and Simkin. We consider noisy leakage-resilience, where a random subset of leakages is replaced by uniformly random noise. We prove a lower bound for Shamir’s secret sharing, similar to that of Nielsen and Simkin, which holds even when a constant fraction of leakages is replaced by random noise. To this end, we first prove a lower bound on the share size of any noisy-leakage-resilient sharing scheme. We then use this lower bound to show that there exist universal constants c1, c2, such that for sufficiently large n it holds that Shamir’s secret sharing scheme is not noisy-leakage-resilient for t≤c1.n/log(n), even when a c2 fraction of leakages are replaced by random noise.\r\n\r\n\r\n\r\n","lang":"eng"}],"type":"conference","alternative_title":["LNCS"],"date_published":"2023-10-01T00:00:00Z","publication":"8th International Conference on Cryptology and Information Security in Latin America","citation":{"chicago":"Hoffmann, Charlotte, and Mark Simkin. “Stronger Lower Bounds for Leakage-Resilient Secret Sharing.” In 8th International Conference on Cryptology and Information Security in Latin America, 14168:215–28. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-44469-2_11.","short":"C. Hoffmann, M. Simkin, in:, 8th International Conference on Cryptology and Information Security in Latin America, Springer Nature, 2023, pp. 215–228.","mla":"Hoffmann, Charlotte, and Mark Simkin. “Stronger Lower Bounds for Leakage-Resilient Secret Sharing.” 8th International Conference on Cryptology and Information Security in Latin America, vol. 14168, Springer Nature, 2023, pp. 215–28, doi:10.1007/978-3-031-44469-2_11.","apa":"Hoffmann, C., & Simkin, M. (2023). Stronger lower bounds for leakage-resilient secret sharing. In 8th International Conference on Cryptology and Information Security in Latin America (Vol. 14168, pp. 215–228). Quito, Ecuador: Springer Nature. https://doi.org/10.1007/978-3-031-44469-2_11","ieee":"C. Hoffmann and M. Simkin, “Stronger lower bounds for leakage-resilient secret sharing,” in 8th International Conference on Cryptology and Information Security in Latin America, Quito, Ecuador, 2023, vol. 14168, pp. 215–228.","ista":"Hoffmann C, Simkin M. 2023. Stronger lower bounds for leakage-resilient secret sharing. 8th International Conference on Cryptology and Information Security in Latin America. LATINCRYPT: Conference on Cryptology and Information Security in Latin America, LNCS, vol. 14168, 215–228.","ama":"Hoffmann C, Simkin M. Stronger lower bounds for leakage-resilient secret sharing. In: 8th International Conference on Cryptology and Information Security in Latin America. Vol 14168. Springer Nature; 2023:215-228. doi:10.1007/978-3-031-44469-2_11"},"page":"215-228","day":"01","article_processing_charge":"No","scopus_import":"1","author":[{"last_name":"Hoffmann","first_name":"Charlotte","orcid":"0000-0003-2027-5549","id":"0f78d746-dc7d-11ea-9b2f-83f92091afe7","full_name":"Hoffmann, Charlotte"},{"last_name":"Simkin","first_name":"Mark","full_name":"Simkin, Mark"}],"date_updated":"2023-10-31T11:43:12Z","date_created":"2023-10-29T23:01:16Z","volume":14168,"year":"2023","publication_status":"published","department":[{"_id":"KrPi"}],"publisher":"Springer Nature","conference":{"name":"LATINCRYPT: Conference on Cryptology and Information Security in Latin America","end_date":"2023-10-06","start_date":"2023-10-03","location":"Quito, Ecuador"},"doi":"10.1007/978-3-031-44469-2_11","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2023/1017"}],"quality_controlled":"1","month":"10","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031444685"],"issn":["0302-9743"]}},{"_id":"14458","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 202","status":"public","title":"SparseGPT: Massive language models can be accurately pruned in one-shot","oa_version":"Preprint","type":"conference","alternative_title":["PMLR"],"abstract":[{"lang":"eng","text":"We show for the first time that large-scale generative pretrained transformer (GPT) family models can be pruned to at least 50% sparsity in one-shot, without any retraining, at minimal loss of accuracy. This is achieved via a new pruning method called SparseGPT, specifically designed to work efficiently and accurately on massive GPT-family models. We can execute SparseGPT on the largest available open-source models, OPT-175B and BLOOM-176B, in under 4.5 hours, and can reach 60% unstructured sparsity with negligible increase in perplexity: remarkably, more than 100 billion weights from these models can be ignored at inference time. SparseGPT generalizes to semi-structured (2:4 and 4:8) patterns, and is compatible with weight quantization approaches. The code is available at: https://github.com/IST-DASLab/sparsegpt."}],"citation":{"ieee":"E. Frantar and D.-A. Alistarh, “SparseGPT: Massive language models can be accurately pruned in one-shot,” in Proceedings of the 40th International Conference on Machine Learning, Honolulu, Hawaii, HI, United States, 2023, vol. 202, pp. 10323–10337.","apa":"Frantar, E., & Alistarh, D.-A. (2023). SparseGPT: Massive language models can be accurately pruned in one-shot. In Proceedings of the 40th International Conference on Machine Learning (Vol. 202, pp. 10323–10337). Honolulu, Hawaii, HI, United States: ML Research Press.","ista":"Frantar E, Alistarh D-A. 2023. SparseGPT: Massive language models can be accurately pruned in one-shot. Proceedings of the 40th International Conference on Machine Learning. ICML: International Conference on Machine Learning, PMLR, vol. 202, 10323–10337.","ama":"Frantar E, Alistarh D-A. SparseGPT: Massive language models can be accurately pruned in one-shot. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:10323-10337.","chicago":"Frantar, Elias, and Dan-Adrian Alistarh. “SparseGPT: Massive Language Models Can Be Accurately Pruned in One-Shot.” In Proceedings of the 40th International Conference on Machine Learning, 202:10323–37. ML Research Press, 2023.","short":"E. Frantar, D.-A. Alistarh, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 10323–10337.","mla":"Frantar, Elias, and Dan-Adrian Alistarh. “SparseGPT: Massive Language Models Can Be Accurately Pruned in One-Shot.” Proceedings of the 40th International Conference on Machine Learning, vol. 202, ML Research Press, 2023, pp. 10323–37."},"publication":"Proceedings of the 40th International Conference on Machine Learning","page":"10323-10337","date_published":"2023-07-30T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"30","year":"2023","acknowledgement":"The authors gratefully acknowledge funding from the European Research Council (ERC) under the European Union’s Horizon 2020 programme (grant agreement No. 805223 ScaleML), as well as experimental support from Eldar Kurtic, and from the IST Austria IT department, in particular Stefano Elefante, Andrei Hornoiu, and Alois Schloegl.","department":[{"_id":"DaAl"}],"publisher":"ML Research Press","publication_status":"published","author":[{"id":"09a8f98d-ec99-11ea-ae11-c063a7b7fe5f","last_name":"Frantar","first_name":"Elias","full_name":"Frantar, Elias"},{"first_name":"Dan-Adrian","last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X","full_name":"Alistarh, Dan-Adrian"}],"volume":202,"date_created":"2023-10-29T23:01:16Z","date_updated":"2023-10-31T09:59:42Z","ec_funded":1,"external_id":{"arxiv":["2301.00774"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2301.00774","open_access":"1"}],"oa":1,"project":[{"_id":"268A44D6-B435-11E9-9278-68D0E5697425","grant_number":"805223","name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020"}],"quality_controlled":"1","conference":{"name":"ICML: International Conference on Machine Learning","end_date":"2023-07-29","location":"Honolulu, Hawaii, HI, United States","start_date":"2023-07-23"},"language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"publication_identifier":{"eissn":["2640-3498"]},"month":"07"},{"date_published":"2023-10-05T00:00:00Z","article_type":"original","citation":{"mla":"Cornalba, Federico, et al. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications, Springer Nature, 2023, doi:10.1007/s00521-023-09033-7.","short":"F. Cornalba, C. Disselkamp, D. Scassola, C. Helf, Neural Computing and Applications (2023).","chicago":"Cornalba, Federico, Constantin Disselkamp, Davide Scassola, and Christopher Helf. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications. Springer Nature, 2023. https://doi.org/10.1007/s00521-023-09033-7.","ama":"Cornalba F, Disselkamp C, Scassola D, Helf C. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. 2023. doi:10.1007/s00521-023-09033-7","ista":"Cornalba F, Disselkamp C, Scassola D, Helf C. 2023. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications.","apa":"Cornalba, F., Disselkamp, C., Scassola, D., & Helf, C. (2023). Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. Springer Nature. https://doi.org/10.1007/s00521-023-09033-7","ieee":"F. Cornalba, C. Disselkamp, D. Scassola, and C. Helf, “Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading,” Neural Computing and Applications. Springer Nature, 2023."},"publication":"Neural Computing and Applications","article_processing_charge":"Yes (via OA deal)","day":"05","scopus_import":"1","oa_version":"Published Version","title":"Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14451","abstract":[{"lang":"eng","text":"We investigate the potential of Multi-Objective, Deep Reinforcement Learning for stock and cryptocurrency single-asset trading: in particular, we consider a Multi-Objective algorithm which generalizes the reward functions and discount factor (i.e., these components are not specified a priori, but incorporated in the learning process). Firstly, using several important assets (BTCUSD, ETHUSDT, XRPUSDT, AAPL, SPY, NIFTY50), we verify the reward generalization property of the proposed Multi-Objective algorithm, and provide preliminary statistical evidence showing increased predictive stability over the corresponding Single-Objective strategy. Secondly, we show that the Multi-Objective algorithm has a clear edge over the corresponding Single-Objective strategy when the reward mechanism is sparse (i.e., when non-null feedback is infrequent over time). Finally, we discuss the generalization properties with respect to the discount factor. The entirety of our code is provided in open-source format."}],"type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1007/s00521-023-09033-7","project":[{"name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","external_id":{"arxiv":["2203.04579"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s00521-023-09033-7"}],"publication_identifier":{"issn":["0941-0643"],"eissn":["1433-3058"]},"month":"10","date_updated":"2023-10-31T10:58:28Z","date_created":"2023-10-22T22:01:16Z","author":[{"full_name":"Cornalba, Federico","first_name":"Federico","last_name":"Cornalba","id":"2CEB641C-A400-11E9-A717-D712E6697425","orcid":"0000-0002-6269-5149"},{"first_name":"Constantin","last_name":"Disselkamp","full_name":"Disselkamp, Constantin"},{"full_name":"Scassola, Davide","last_name":"Scassola","first_name":"Davide"},{"first_name":"Christopher","last_name":"Helf","full_name":"Helf, Christopher"}],"department":[{"_id":"JuFi"}],"publisher":"Springer Nature","publication_status":"epub_ahead","year":"2023","acknowledgement":"Open access funding provided by Università degli Studi di Trieste within the CRUI-CARE Agreement. Funding was provided by Austrian Science Fund (Grant No. F65), Horizon 2020 (Grant No. 754411) and Österreichische Forschungsförderungsgesellschaft.","ec_funded":1},{"article_number":"95","volume":46,"date_updated":"2023-10-31T11:16:41Z","date_created":"2023-10-22T22:01:13Z","author":[{"id":"441e7207-f91f-11ec-b67c-9e6fe3d8fd6d","first_name":"Mauricio Nicolas","last_name":"Rojas Vega","full_name":"Rojas Vega, Mauricio Nicolas"},{"full_name":"De Castro, Pablo","last_name":"De Castro","first_name":"Pablo"},{"last_name":"Soto","first_name":"Rodrigo","full_name":"Soto, Rodrigo"}],"publisher":"Springer Nature","department":[{"_id":"AnSa"}],"publication_status":"published","pmid":1,"acknowledgement":"MR-V and RS are supported by Fondecyt Grant No. 1220536 and Millennium Science Initiative Program NCN19_170D of ANID, Chile. P.d.C. was supported by Scholarships Nos. 2021/10139-2 and 2022/13872-5 and ICTP-SAIFR Grant No. 2021/14335-0, all granted by São Paulo Research Foundation (FAPESP), Brazil.","year":"2023","publication_identifier":{"issn":["1292-8941"],"eissn":["1292-895X"]},"month":"10","language":[{"iso":"eng"}],"doi":"10.1140/epje/s10189-023-00354-y","quality_controlled":"1","external_id":{"pmid":["37819444"]},"issue":"10","abstract":[{"lang":"eng","text":"In the presence of an obstacle, active particles condensate into a surface “wetting” layer due to persistent motion. If the obstacle is asymmetric, a rectification current arises in addition to wetting. Asymmetric geometries are therefore commonly used to concentrate microorganisms like bacteria and sperms. However, most studies neglect the fact that biological active matter is diverse, composed of individuals with distinct self-propulsions. Using simulations, we study a mixture of “fast” and “slow” active Brownian disks in two dimensions interacting with large half-disk obstacles. With this prototypical obstacle geometry, we analyze how the stationary collective behavior depends on the degree of self-propulsion “diversity,” defined as proportional to the difference between the self-propulsion speeds, while keeping the average self-propulsion speed fixed. A wetting layer rich in fast particles arises. The rectification current is amplified by speed diversity due to a superlinear dependence of rectification on self-propulsion speed, which arises from cooperative effects. Thus, the total rectification current cannot be obtained from an effective one-component active fluid with the same average self-propulsion speed, highlighting the importance of considering diversity in active matter."}],"type":"journal_article","oa_version":"None","intvolume":" 46","title":"Mixtures of self-propelled particles interacting with asymmetric obstacles","status":"public","_id":"14442","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2023-10-01T00:00:00Z","article_type":"original","citation":{"chicago":"Rojas Vega, Mauricio Nicolas, Pablo De Castro, and Rodrigo Soto. “Mixtures of Self-Propelled Particles Interacting with Asymmetric Obstacles.” The European Physical Journal E. Springer Nature, 2023. https://doi.org/10.1140/epje/s10189-023-00354-y.","mla":"Rojas Vega, Mauricio Nicolas, et al. “Mixtures of Self-Propelled Particles Interacting with Asymmetric Obstacles.” The European Physical Journal E, vol. 46, no. 10, 95, Springer Nature, 2023, doi:10.1140/epje/s10189-023-00354-y.","short":"M.N. Rojas Vega, P. De Castro, R. Soto, The European Physical Journal E 46 (2023).","ista":"Rojas Vega MN, De Castro P, Soto R. 2023. Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. 46(10), 95.","apa":"Rojas Vega, M. N., De Castro, P., & Soto, R. (2023). Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. Springer Nature. https://doi.org/10.1140/epje/s10189-023-00354-y","ieee":"M. N. Rojas Vega, P. De Castro, and R. Soto, “Mixtures of self-propelled particles interacting with asymmetric obstacles,” The European Physical Journal E, vol. 46, no. 10. Springer Nature, 2023.","ama":"Rojas Vega MN, De Castro P, Soto R. Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. 2023;46(10). doi:10.1140/epje/s10189-023-00354-y"},"publication":"The European Physical Journal E"},{"type":"journal_article","abstract":[{"text":"We prove several results about substructures in Latin squares. First, we explain how to adapt our recent work on high-girth Steiner triple systems to the setting of Latin squares, resolving a conjecture of Linial that there exist Latin squares with arbitrarily high girth. As a consequence, we see that the number of order- n Latin squares with no intercalate (i.e., no 2×2 Latin subsquare) is at least (e−9/4n−o(n))n2. Equivalently, P[N=0]≥e−n2/4−o(n2)=e−(1+o(1))EN\r\n , where N is the number of intercalates in a uniformly random order- n Latin square. \r\nIn fact, extending recent work of Kwan, Sah, and Sawhney, we resolve the general large-deviation problem for intercalates in random Latin squares, up to constant factors in the exponent: for any constant 0<δ≤1 we have P[N≤(1−δ)EN]=exp(−Θ(n2)) and for any constant δ>0 we have P[N≥(1+δ)EN]=exp(−Θ(n4/3logn)). \r\nFinally, as an application of some new general tools for studying substructures in random Latin squares, we show that in almost all order- n Latin squares, the number of cuboctahedra (i.e., the number of pairs of possibly degenerate 2×2 submatrices with the same arrangement of symbols) is of order n4, which is the minimum possible. As observed by Gowers and Long, this number can be interpreted as measuring ``how associative'' the quasigroup associated with the Latin square is.","lang":"eng"}],"issue":"2","status":"public","title":"Substructures in Latin squares","intvolume":" 256","_id":"14444","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","scopus_import":"1","day":"01","article_processing_charge":"Yes (in subscription journal)","article_type":"original","page":"363-416","publication":"Israel Journal of Mathematics","citation":{"mla":"Kwan, Matthew Alan, et al. “Substructures in Latin Squares.” Israel Journal of Mathematics, vol. 256, no. 2, Springer Nature, 2023, pp. 363–416, doi:10.1007/s11856-023-2513-9.","short":"M.A. Kwan, A. Sah, M. Sawhney, M. Simkin, Israel Journal of Mathematics 256 (2023) 363–416.","chicago":"Kwan, Matthew Alan, Ashwin Sah, Mehtaab Sawhney, and Michael Simkin. “Substructures in Latin Squares.” Israel Journal of Mathematics. Springer Nature, 2023. https://doi.org/10.1007/s11856-023-2513-9.","ama":"Kwan MA, Sah A, Sawhney M, Simkin M. Substructures in Latin squares. Israel Journal of Mathematics. 2023;256(2):363-416. doi:10.1007/s11856-023-2513-9","ista":"Kwan MA, Sah A, Sawhney M, Simkin M. 2023. Substructures in Latin squares. Israel Journal of Mathematics. 256(2), 363–416.","apa":"Kwan, M. A., Sah, A., Sawhney, M., & Simkin, M. (2023). Substructures in Latin squares. Israel Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s11856-023-2513-9","ieee":"M. A. Kwan, A. Sah, M. Sawhney, and M. Simkin, “Substructures in Latin squares,” Israel Journal of Mathematics, vol. 256, no. 2. Springer Nature, pp. 363–416, 2023."},"date_published":"2023-09-01T00:00:00Z","publication_status":"published","department":[{"_id":"MaKw"}],"publisher":"Springer Nature","acknowledgement":"Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-1745302. Sah was supported by the PD Soros Fellowship. Simkin was supported by the Center of Mathematical Sciences and Applications at Harvard University.","year":"2023","date_updated":"2023-10-31T11:27:30Z","date_created":"2023-10-22T22:01:14Z","volume":256,"author":[{"orcid":"0000-0002-4003-7567","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","last_name":"Kwan","first_name":"Matthew Alan","full_name":"Kwan, Matthew Alan"},{"last_name":"Sah","first_name":"Ashwin","full_name":"Sah, Ashwin"},{"first_name":"Mehtaab","last_name":"Sawhney","full_name":"Sawhney, Mehtaab"},{"first_name":"Michael","last_name":"Simkin","full_name":"Simkin, Michael"}],"month":"09","publication_identifier":{"eissn":["1565-8511"],"issn":["0021-2172"]},"quality_controlled":"1","oa":1,"external_id":{"arxiv":["2202.05088"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2202.05088","open_access":"1"}],"language":[{"iso":"eng"}],"doi":"10.1007/s11856-023-2513-9"},{"publication_identifier":{"isbn":["9783031442667"],"eissn":["1611-3349"],"issn":["0302-9743"]},"month":"10","oa":1,"external_id":{"arxiv":["2308.00341"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2308.00341"}],"project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software"}],"quality_controlled":"1","doi":"10.1007/978-3-031-44267-4_15","conference":{"end_date":"2023-10-06","location":"Thessaloniki, Greece","start_date":"2023-10-03","name":"RV: Conference on Runtime Verification"},"language":[{"iso":"eng"}],"ec_funded":1,"year":"2023","acknowledgement":"This work is supported by the European Research Council under Grant No.: ERC-2020-AdG 101020093.","department":[{"_id":"ToHe"}],"publisher":"Springer Nature","publication_status":"published","author":[{"full_name":"Henzinger, Thomas A","last_name":"Henzinger","first_name":"Thomas A","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kueffner, Konstantin","orcid":"0000-0001-8974-2542","id":"8121a2d0-dc85-11ea-9058-af578f3b4515","last_name":"Kueffner","first_name":"Konstantin"},{"full_name":"Mallik, Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598","orcid":"0000-0001-9864-7475","first_name":"Kaushik","last_name":"Mallik"}],"volume":14245,"date_created":"2023-10-29T23:01:15Z","date_updated":"2023-10-31T11:48:20Z","scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"ama":"Henzinger TA, Kueffner K, Mallik K. Monitoring algorithmic fairness under partial observations. In: 23rd International Conference on Runtime Verification. Vol 14245. Springer Nature; 2023:291-311. doi:10.1007/978-3-031-44267-4_15","ista":"Henzinger TA, Kueffner K, Mallik K. 2023. Monitoring algorithmic fairness under partial observations. 23rd International Conference on Runtime Verification. RV: Conference on Runtime Verification, LNCS, vol. 14245, 291–311.","ieee":"T. A. Henzinger, K. Kueffner, and K. Mallik, “Monitoring algorithmic fairness under partial observations,” in 23rd International Conference on Runtime Verification, Thessaloniki, Greece, 2023, vol. 14245, pp. 291–311.","apa":"Henzinger, T. A., Kueffner, K., & Mallik, K. (2023). Monitoring algorithmic fairness under partial observations. In 23rd International Conference on Runtime Verification (Vol. 14245, pp. 291–311). Thessaloniki, Greece: Springer Nature. https://doi.org/10.1007/978-3-031-44267-4_15","mla":"Henzinger, Thomas A., et al. “Monitoring Algorithmic Fairness under Partial Observations.” 23rd International Conference on Runtime Verification, vol. 14245, Springer Nature, 2023, pp. 291–311, doi:10.1007/978-3-031-44267-4_15.","short":"T.A. Henzinger, K. Kueffner, K. Mallik, in:, 23rd International Conference on Runtime Verification, Springer Nature, 2023, pp. 291–311.","chicago":"Henzinger, Thomas A, Konstantin Kueffner, and Kaushik Mallik. “Monitoring Algorithmic Fairness under Partial Observations.” In 23rd International Conference on Runtime Verification, 14245:291–311. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-44267-4_15."},"publication":"23rd International Conference on Runtime Verification","page":"291-311","date_published":"2023-10-01T00:00:00Z","type":"conference","alternative_title":["LNCS"],"abstract":[{"text":"As AI and machine-learned software are used increasingly for making decisions that affect humans, it is imperative that they remain fair and unbiased in their decisions. To complement design-time bias mitigation measures, runtime verification techniques have been introduced recently to monitor the algorithmic fairness of deployed systems. Previous monitoring techniques assume full observability of the states of the (unknown) monitored system. Moreover, they can monitor only fairness properties that are specified as arithmetic expressions over the probabilities of different events. In this work, we extend fairness monitoring to systems modeled as partially observed Markov chains (POMC), and to specifications containing arithmetic expressions over the expected values of numerical functions on event sequences. The only assumptions we make are that the underlying POMC is aperiodic and starts in the stationary distribution, with a bound on its mixing time being known. These assumptions enable us to estimate a given property for the entire distribution of possible executions of the monitored POMC, by observing only a single execution. Our monitors observe a long run of the system and, after each new observation, output updated PAC-estimates of how fair or biased the system is. The monitors are computationally lightweight and, using a prototype implementation, we demonstrate their effectiveness on several real-world examples.","lang":"eng"}],"_id":"14454","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 14245","status":"public","title":"Monitoring algorithmic fairness under partial observations","oa_version":"Preprint"},{"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"quality_controlled":"1","doi":"10.2478/msr-2023-0023","language":[{"iso":"eng"}],"month":"08","publication_identifier":{"eissn":["1335-8871"]},"acknowledgement":"The work was supported by the Scientific Grant Agency of the Ministry of Education of the Slovak Republic and the Slovak Academy of Sciences, projects APVV-21-0216, VEGA2-0096-21 and VEGA 2-0023-22.","year":"2023","publication_status":"published","department":[{"_id":"ChLa"}],"publisher":"Sciendo","author":[{"full_name":"Jakubík, Jozef","first_name":"Jozef","last_name":"Jakubík"},{"id":"3EC6EE64-F248-11E8-B48F-1D18A9856A87","first_name":"Phuong","last_name":"Bui Thi Mai","full_name":"Bui Thi Mai, Phuong"},{"full_name":"Chvosteková, Martina","last_name":"Chvosteková","first_name":"Martina"},{"full_name":"Krakovská, Anna","first_name":"Anna","last_name":"Krakovská"}],"date_updated":"2023-10-31T12:12:47Z","date_created":"2023-10-22T22:01:15Z","volume":23,"file_date_updated":"2023-10-31T12:07:23Z","publication":"Measurement Science Review","citation":{"mla":"Jakubík, Jozef, et al. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review, vol. 23, no. 4, Sciendo, 2023, pp. 175–83, doi:10.2478/msr-2023-0023.","short":"J. Jakubík, M. Phuong, M. Chvosteková, A. Krakovská, Measurement Science Review 23 (2023) 175–183.","chicago":"Jakubík, Jozef, Mary Phuong, Martina Chvosteková, and Anna Krakovská. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review. Sciendo, 2023. https://doi.org/10.2478/msr-2023-0023.","ama":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. Against the flow of time with multi-output models. Measurement Science Review. 2023;23(4):175-183. doi:10.2478/msr-2023-0023","ista":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. 2023. Against the flow of time with multi-output models. Measurement Science Review. 23(4), 175–183.","apa":"Jakubík, J., Phuong, M., Chvosteková, M., & Krakovská, A. (2023). Against the flow of time with multi-output models. Measurement Science Review. Sciendo. https://doi.org/10.2478/msr-2023-0023","ieee":"J. Jakubík, M. Phuong, M. Chvosteková, and A. Krakovská, “Against the flow of time with multi-output models,” Measurement Science Review, vol. 23, no. 4. Sciendo, pp. 175–183, 2023."},"article_type":"original","page":"175-183","date_published":"2023-08-01T00:00:00Z","scopus_import":"1","day":"01","article_processing_charge":"Yes","has_accepted_license":"1","_id":"14446","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["510"],"title":"Against the flow of time with multi-output models","status":"public","intvolume":" 23","file":[{"relation":"main_file","file_id":"14476","checksum":"b069cc10fa6a7c96b2bc9f728165f9e6","success":1,"date_updated":"2023-10-31T12:07:23Z","date_created":"2023-10-31T12:07:23Z","access_level":"open_access","file_name":"2023_MeasurementScienceRev_Jakubik.pdf","file_size":2639783,"content_type":"application/pdf","creator":"dernst"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Recent work has paid close attention to the first principle of Granger causality, according to which cause precedes effect. In this context, the question may arise whether the detected direction of causality also reverses after the time reversal of unidirectionally coupled data. Recently, it has been shown that for unidirectionally causally connected autoregressive (AR) processes X → Y, after time reversal of data, the opposite causal direction Y → X is indeed detected, although typically as part of the bidirectional X↔ Y link. As we argue here, the answer is different when the measured data are not from AR processes but from linked deterministic systems. When the goal is the usual forward data analysis, cross-mapping-like approaches correctly detect X → Y, while Granger causality-like approaches, which should not be used for deterministic time series, detect causal independence X → Y. The results of backward causal analysis depend on the predictability of the reversed data. Unlike AR processes, observables from deterministic dynamical systems, even complex nonlinear ones, can be predicted well forward, while backward predictions can be difficult (notably when the time reversal of a function leads to one-to-many relations). To address this problem, we propose an approach based on models that provide multiple candidate predictions for the target, combined with a loss function that consideres only the best candidate. The resulting good forward and backward predictability supports the view that unidirectionally causally linked deterministic dynamical systems X → Y can be expected to detect the same link both before and after time reversal."}],"issue":"4"},{"abstract":[{"lang":"eng","text":"Importance Climate change, pollution, urbanization, socioeconomic inequality, and psychosocial effects of the COVID-19 pandemic have caused massive changes in environmental conditions that affect brain health during the life span, both on a population level as well as on the level of the individual. How these environmental factors influence the brain, behavior, and mental illness is not well known.\r\nObservations A research strategy enabling population neuroscience to contribute to identify brain mechanisms underlying environment-related mental illness by leveraging innovative enrichment tools for data federation, geospatial observation, climate and pollution measures, digital health, and novel data integration techniques is described. This strategy can inform innovative treatments that target causal cognitive and molecular mechanisms of mental illness related to the environment. An example is presented of the environMENTAL Project that is leveraging federated cohort data of over 1.5 million European citizens and patients enriched with deep phenotyping data from large-scale behavioral neuroimaging cohorts to identify brain mechanisms related to environmental adversity underlying symptoms of depression, anxiety, stress, and substance misuse.\r\nConclusions and Relevance This research will lead to the development of objective biomarkers and evidence-based interventions that will significantly improve outcomes of environment-related mental illness."}],"issue":"10","type":"journal_article","oa_version":"None","title":"Addressing global environmental challenges to mental health using population neuroscience: A review","status":"public","intvolume":" 80","_id":"14443","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2023-10-01T00:00:00Z","article_type":"review","page":"1066-1074","publication":"JAMA Psychiatry","citation":{"ama":"Schumann G, Andreassen OA, Banaschewski T, et al. Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. 2023;80(10):1066-1074. doi:10.1001/jamapsychiatry.2023.2996","ista":"Schumann G, Andreassen OA, Banaschewski T, Calhoun VD, Clinton N, Desrivieres S, Brandlistuen RE, Feng J, Hese S, Hitchen E, Hoffmann P, Jia T, Jirsa V, Marquand AF, Nees F, Nöthen MM, Novarino G, Polemiti E, Ralser M, Rapp M, Schepanski K, Schikowski T, Slater M, Sommer P, Stahl BC, Thompson PM, Twardziok S, Van Der Meer D, Walter H, Westlye L. 2023. Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. 80(10), 1066–1074.","apa":"Schumann, G., Andreassen, O. A., Banaschewski, T., Calhoun, V. D., Clinton, N., Desrivieres, S., … Westlye, L. (2023). Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. American Medical Association. https://doi.org/10.1001/jamapsychiatry.2023.2996","ieee":"G. Schumann et al., “Addressing global environmental challenges to mental health using population neuroscience: A review,” JAMA Psychiatry, vol. 80, no. 10. American Medical Association, pp. 1066–1074, 2023.","mla":"Schumann, Gunter, et al. “Addressing Global Environmental Challenges to Mental Health Using Population Neuroscience: A Review.” JAMA Psychiatry, vol. 80, no. 10, American Medical Association, 2023, pp. 1066–74, doi:10.1001/jamapsychiatry.2023.2996.","short":"G. Schumann, O.A. Andreassen, T. Banaschewski, V.D. Calhoun, N. Clinton, S. Desrivieres, R.E. Brandlistuen, J. Feng, S. Hese, E. Hitchen, P. Hoffmann, T. Jia, V. Jirsa, A.F. Marquand, F. Nees, M.M. Nöthen, G. Novarino, E. Polemiti, M. Ralser, M. Rapp, K. Schepanski, T. Schikowski, M. Slater, P. Sommer, B.C. Stahl, P.M. Thompson, S. Twardziok, D. Van Der Meer, H. Walter, L. Westlye, JAMA Psychiatry 80 (2023) 1066–1074.","chicago":"Schumann, Gunter, Ole A. Andreassen, Tobias Banaschewski, Vince D. Calhoun, Nicholas Clinton, Sylvane Desrivieres, Ragnhild Eek Brandlistuen, et al. “Addressing Global Environmental Challenges to Mental Health Using Population Neuroscience: A Review.” JAMA Psychiatry. American Medical Association, 2023. https://doi.org/10.1001/jamapsychiatry.2023.2996."},"date_created":"2023-10-22T22:01:14Z","date_updated":"2023-10-31T12:17:20Z","volume":80,"author":[{"first_name":"Gunter","last_name":"Schumann","full_name":"Schumann, Gunter"},{"full_name":"Andreassen, Ole A.","last_name":"Andreassen","first_name":"Ole A."},{"full_name":"Banaschewski, Tobias","first_name":"Tobias","last_name":"Banaschewski"},{"full_name":"Calhoun, Vince D.","last_name":"Calhoun","first_name":"Vince D."},{"last_name":"Clinton","first_name":"Nicholas","full_name":"Clinton, Nicholas"},{"first_name":"Sylvane","last_name":"Desrivieres","full_name":"Desrivieres, Sylvane"},{"first_name":"Ragnhild Eek","last_name":"Brandlistuen","full_name":"Brandlistuen, Ragnhild Eek"},{"full_name":"Feng, Jianfeng","first_name":"Jianfeng","last_name":"Feng"},{"full_name":"Hese, Soeren","first_name":"Soeren","last_name":"Hese"},{"full_name":"Hitchen, Esther","last_name":"Hitchen","first_name":"Esther"},{"full_name":"Hoffmann, Per","last_name":"Hoffmann","first_name":"Per"},{"last_name":"Jia","first_name":"Tianye","full_name":"Jia, Tianye"},{"full_name":"Jirsa, Viktor","first_name":"Viktor","last_name":"Jirsa"},{"full_name":"Marquand, Andre F.","last_name":"Marquand","first_name":"Andre F."},{"last_name":"Nees","first_name":"Frauke","full_name":"Nees, Frauke"},{"full_name":"Nöthen, Markus M.","last_name":"Nöthen","first_name":"Markus M."},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7673-7178","first_name":"Gaia","last_name":"Novarino","full_name":"Novarino, Gaia"},{"first_name":"Elli","last_name":"Polemiti","full_name":"Polemiti, Elli"},{"last_name":"Ralser","first_name":"Markus","full_name":"Ralser, Markus"},{"full_name":"Rapp, Michael","last_name":"Rapp","first_name":"Michael"},{"full_name":"Schepanski, Kerstin","first_name":"Kerstin","last_name":"Schepanski"},{"last_name":"Schikowski","first_name":"Tamara","full_name":"Schikowski, Tamara"},{"first_name":"Mel","last_name":"Slater","full_name":"Slater, Mel"},{"last_name":"Sommer","first_name":"Peter","full_name":"Sommer, Peter"},{"full_name":"Stahl, Bernd Carsten","first_name":"Bernd Carsten","last_name":"Stahl"},{"full_name":"Thompson, Paul M.","first_name":"Paul M.","last_name":"Thompson"},{"full_name":"Twardziok, Sven","last_name":"Twardziok","first_name":"Sven"},{"full_name":"Van Der Meer, Dennis","last_name":"Van Der Meer","first_name":"Dennis"},{"first_name":"Henrik","last_name":"Walter","full_name":"Walter, Henrik"},{"last_name":"Westlye","first_name":"Lars","full_name":"Westlye, Lars"}],"publication_status":"published","department":[{"_id":"GaNo"}],"publisher":"American Medical Association","year":"2023","pmid":1,"month":"10","publication_identifier":{"eissn":["2168-6238"]},"language":[{"iso":"eng"}],"doi":"10.1001/jamapsychiatry.2023.2996","quality_controlled":"1","external_id":{"pmid":["37610741"]}},{"doi":"10.1007/s00220-023-04841-3","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2207.03156"]},"project":[{"grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Analysis of quantum many-body systems"}],"quality_controlled":"1","publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"month":"11","author":[{"full_name":"Brooks, Morris","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425","orcid":"0000-0002-6249-0928","first_name":"Morris","last_name":"Brooks"},{"full_name":"Seiringer, Robert","last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"volume":404,"date_updated":"2023-10-31T12:22:51Z","date_created":"2023-10-22T22:01:13Z","year":"2023","acknowledgement":"Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC grant agreement No 694227 is acknowledged. Open access funding provided by Institute of Science and Technology (IST Austria).","department":[{"_id":"RoSe"}],"publisher":"Springer Nature","publication_status":"published","ec_funded":1,"file_date_updated":"2023-10-31T12:21:39Z","date_published":"2023-11-01T00:00:00Z","citation":{"short":"M. Brooks, R. Seiringer, Communications in Mathematical Physics 404 (2023) 287–337.","mla":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics, vol. 404, Springer Nature, 2023, pp. 287–337, doi:10.1007/s00220-023-04841-3.","chicago":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04841-3.","ama":"Brooks M, Seiringer R. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 2023;404:287-337. doi:10.1007/s00220-023-04841-3","ieee":"M. Brooks and R. Seiringer, “The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy,” Communications in Mathematical Physics, vol. 404. Springer Nature, pp. 287–337, 2023.","apa":"Brooks, M., & Seiringer, R. (2023). The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04841-3","ista":"Brooks M, Seiringer R. 2023. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 404, 287–337."},"publication":"Communications in Mathematical Physics","page":"287-337","article_type":"original","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","day":"01","scopus_import":"1","file":[{"relation":"main_file","file_id":"14477","checksum":"1ae49b39247cb6b40ff75997381581b8","success":1,"date_updated":"2023-10-31T12:21:39Z","date_created":"2023-10-31T12:21:39Z","access_level":"open_access","file_name":"2023_CommMathPhysics_Brooks.pdf","content_type":"application/pdf","file_size":832375,"creator":"dernst"}],"oa_version":"Published Version","_id":"14441","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 404","status":"public","title":"The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy","ddc":["510"],"abstract":[{"lang":"eng","text":"We study the Fröhlich polaron model in R3, and establish the subleading term in the strong coupling asymptotics of its ground state energy, corresponding to the quantum corrections to the classical energy determined by the Pekar approximation."}],"type":"journal_article"},{"date_created":"2023-10-22T22:01:16Z","date_updated":"2023-10-31T12:01:24Z","volume":2023,"author":[{"id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir","last_name":"Kolmogorov","full_name":"Kolmogorov, Vladimir"}],"publication_status":"published","department":[{"_id":"VlKo"}],"publisher":"IEEE","year":"2023","month":"08","publication_identifier":{"isbn":["9798350301298"],"issn":["1063-6919"]},"language":[{"iso":"eng"}],"conference":{"start_date":"2023-06-17","location":"Vancouver, Canada","end_date":"2023-06-24","name":"CVPR: Conference on Computer Vision and Pattern Recognition"},"doi":"10.1109/CVPR52729.2023.01153","quality_controlled":"1","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2010.09567"}],"oa":1,"external_id":{"arxiv":["2010.09567"]},"abstract":[{"text":"We consider the problem of solving LP relaxations of MAP-MRF inference problems, and in particular the method proposed recently in [16], [35]. As a key computational subroutine, it uses a variant of the Frank-Wolfe (FW) method to minimize a smooth convex function over a combinatorial polytope. We propose an efficient implementation of this subroutine based on in-face Frank-Wolfe directions, introduced in [4] in a different context. More generally, we define an abstract data structure for a combinatorial subproblem that enables in-face FW directions, and describe its specialization for tree-structured MAP-MRF inference subproblems. Experimental results indicate that the resulting method is the current state-of-art LP solver for some classes of problems. Our code is available at pub.ist.ac.at/~vnk/papers/IN-FACE-FW.html.","lang":"eng"}],"type":"conference","oa_version":"Preprint","title":"Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions","status":"public","intvolume":" 2023","_id":"14448","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"22","article_processing_charge":"No","scopus_import":"1","date_published":"2023-08-22T00:00:00Z","page":"11980-11989","publication":"Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition","citation":{"chicago":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2023:11980–89. IEEE, 2023. https://doi.org/10.1109/CVPR52729.2023.01153.","mla":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 2023, IEEE, 2023, pp. 11980–89, doi:10.1109/CVPR52729.2023.01153.","short":"V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2023, pp. 11980–11989.","ista":"Kolmogorov V. 2023. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition vol. 2023, 11980–11989.","ieee":"V. Kolmogorov, “Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions,” in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Vancouver, Canada, 2023, vol. 2023, pp. 11980–11989.","apa":"Kolmogorov, V. (2023). Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Vol. 2023, pp. 11980–11989). Vancouver, Canada: IEEE. https://doi.org/10.1109/CVPR52729.2023.01153","ama":"Kolmogorov V. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Vol 2023. IEEE; 2023:11980-11989. doi:10.1109/CVPR52729.2023.01153"}},{"file":[{"date_updated":"2023-05-11T10:41:42Z","date_created":"2023-05-11T10:41:42Z","checksum":"6cbc44fdb18bf18834c9e2a5b9c67123","success":1,"relation":"main_file","file_id":"12941","file_size":8401261,"content_type":"application/pdf","creator":"kschuh","file_name":"2023_CellReports_Lyons.pdf","access_level":"open_access"}],"oa_version":"Published Version","intvolume":" 42","title":"Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons","ddc":["580"],"status":"public","_id":"12672","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","issue":"3","abstract":[{"text":"Cytosine methylation within CG dinucleotides (mCG) can be epigenetically inherited over many generations. Such inheritance is thought to be mediated by a semiconservative mechanism that produces binary present/absent methylation patterns. However, we show here that in Arabidopsis thaliana h1ddm1 mutants, intermediate heterochromatic mCG is stably inherited across many generations and is quantitatively associated with transposon expression. We develop a mathematical model that estimates the rates of semiconservative maintenance failure and de novo methylation at each transposon, demonstrating that mCG can be stably inherited at any level via a dynamic balance of these activities. We find that DRM2 – the core methyltransferase of the RNA-directed DNA methylation pathway – catalyzes most of the heterochromatic de novo mCG, with de novo rates orders of magnitude higher than previously thought, whereas chromomethylases make smaller contributions. Our results demonstrate that stable epigenetic inheritance of mCG in plant heterochromatin is enabled by extensive de novo methylation.","lang":"eng"}],"type":"journal_article","date_published":"2023-03-28T00:00:00Z","article_type":"original","citation":{"ista":"Lyons DB, Briffa A, He S, Choi J, Hollwey E, Colicchio J, Anderson I, Feng X, Howard M, Zilberman D. 2023. Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. 42(3), 112132.","ieee":"D. B. Lyons et al., “Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons,” Cell Reports, vol. 42, no. 3. Elsevier, 2023.","apa":"Lyons, D. B., Briffa, A., He, S., Choi, J., Hollwey, E., Colicchio, J., … Zilberman, D. (2023). Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2023.112132","ama":"Lyons DB, Briffa A, He S, et al. Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. 2023;42(3). doi:10.1016/j.celrep.2023.112132","chicago":"Lyons, David B., Amy Briffa, Shengbo He, Jaemyung Choi, Elizabeth Hollwey, Jack Colicchio, Ian Anderson, Xiaoqi Feng, Martin Howard, and Daniel Zilberman. “Extensive de Novo Activity Stabilizes Epigenetic Inheritance of CG Methylation in Arabidopsis Transposons.” Cell Reports. Elsevier, 2023. https://doi.org/10.1016/j.celrep.2023.112132.","mla":"Lyons, David B., et al. “Extensive de Novo Activity Stabilizes Epigenetic Inheritance of CG Methylation in Arabidopsis Transposons.” Cell Reports, vol. 42, no. 3, 112132, Elsevier, 2023, doi:10.1016/j.celrep.2023.112132.","short":"D.B. Lyons, A. Briffa, S. He, J. Choi, E. Hollwey, J. Colicchio, I. Anderson, X. Feng, M. Howard, D. Zilberman, Cell Reports 42 (2023)."},"publication":"Cell Reports","has_accepted_license":"1","article_processing_charge":"Yes","day":"28","scopus_import":"1","volume":42,"date_created":"2023-02-23T09:17:44Z","date_updated":"2023-11-02T12:23:45Z","author":[{"full_name":"Lyons, David B.","first_name":"David B.","last_name":"Lyons"},{"full_name":"Briffa, Amy","first_name":"Amy","last_name":"Briffa"},{"last_name":"He","first_name":"Shengbo","full_name":"He, Shengbo"},{"last_name":"Choi","first_name":"Jaemyung","full_name":"Choi, Jaemyung"},{"full_name":"Hollwey, Elizabeth","id":"b8c4f54b-e484-11eb-8fdc-a54df64ef6dd","last_name":"Hollwey","first_name":"Elizabeth"},{"full_name":"Colicchio, Jack","last_name":"Colicchio","first_name":"Jack"},{"full_name":"Anderson, Ian","first_name":"Ian","last_name":"Anderson"},{"orcid":"0000-0002-4008-1234","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","last_name":"Feng","first_name":"Xiaoqi","full_name":"Feng, Xiaoqi"},{"full_name":"Howard, Martin","first_name":"Martin","last_name":"Howard"},{"last_name":"Zilberman","first_name":"Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","full_name":"Zilberman, Daniel"}],"publisher":"Elsevier","department":[{"_id":"DaZi"},{"_id":"XiFe"}],"publication_status":"published","year":"2023","acknowledgement":"The authors would like to thank Jasper Rine for advice and mentorship to D.B.L., Lesley Philips, Timothy Wells, Sophie Able, and Christina Wistrom for support with plant growth, and Bhagyshree Jamge and Frédéric Berger for help with analysis of ddm1 × WT RNA-sequencing data. This work was supported by BBSRC Institute Strategic Program GEN (BB/P013511/1) to X.F., M.H., and D.Z., a European Research Council grant MaintainMeth (725746) to D.Z., and a postdoctoral fellowship from the Helen Hay Whitney Foundation to D.B.L.","ec_funded":1,"file_date_updated":"2023-05-11T10:41:42Z","article_number":"112132","language":[{"iso":"eng"}],"doi":"10.1016/j.celrep.2023.112132","project":[{"name":"Quantitative analysis of DNA methylation maintenance with chromatin","call_identifier":"H2020","grant_number":"725746","_id":"62935a00-2b32-11ec-9570-eff30fa39068"}],"isi":1,"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000944921600001"]},"publication_identifier":{"eissn":["2211-1247"]},"month":"03"},{"publication_identifier":{"eissn":["2050-5094"]},"month":"06","project":[{"grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","call_identifier":"H2020"}],"isi":1,"quality_controlled":"1","external_id":{"arxiv":["2203.02454"],"isi":["001005008800001"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1017/fms.2023.45","ec_funded":1,"file_date_updated":"2023-07-03T10:36:25Z","department":[{"_id":"RoSe"}],"publisher":"Cambridge University Press","publication_status":"published","acknowledgement":"This research was supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme grant agreement No. 694227 (R.S.) and the Maria Skłodowska-Curie grant agreement No. 665386 (K.M.).","year":"2023","volume":11,"date_created":"2023-07-02T22:00:43Z","date_updated":"2023-11-02T12:30:50Z","author":[{"full_name":"Mitrouskas, David Johannes","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","first_name":"David Johannes","last_name":"Mitrouskas"},{"id":"316457FC-F248-11E8-B48F-1D18A9856A87","last_name":"Mysliwy","first_name":"Krzysztof","full_name":"Mysliwy, Krzysztof"},{"first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert"}],"scopus_import":"1","article_processing_charge":"Yes","has_accepted_license":"1","day":"13","page":"1-52","article_type":"original","citation":{"ama":"Mitrouskas DJ, Mysliwy K, Seiringer R. Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron. Forum of Mathematics. 2023;11:1-52. doi:10.1017/fms.2023.45","apa":"Mitrouskas, D. J., Mysliwy, K., & Seiringer, R. (2023). Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron. Forum of Mathematics. Cambridge University Press. https://doi.org/10.1017/fms.2023.45","ieee":"D. J. Mitrouskas, K. Mysliwy, and R. Seiringer, “Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron,” Forum of Mathematics, vol. 11. Cambridge University Press, pp. 1–52, 2023.","ista":"Mitrouskas DJ, Mysliwy K, Seiringer R. 2023. Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron. Forum of Mathematics. 11, 1–52.","short":"D.J. Mitrouskas, K. Mysliwy, R. Seiringer, Forum of Mathematics 11 (2023) 1–52.","mla":"Mitrouskas, David Johannes, et al. “Optimal Parabolic Upper Bound for the Energy-Momentum Relation of a Strongly Coupled Polaron.” Forum of Mathematics, vol. 11, Cambridge University Press, 2023, pp. 1–52, doi:10.1017/fms.2023.45.","chicago":"Mitrouskas, David Johannes, Krzysztof Mysliwy, and Robert Seiringer. “Optimal Parabolic Upper Bound for the Energy-Momentum Relation of a Strongly Coupled Polaron.” Forum of Mathematics. Cambridge University Press, 2023. https://doi.org/10.1017/fms.2023.45."},"publication":"Forum of Mathematics","date_published":"2023-06-13T00:00:00Z","type":"journal_article","abstract":[{"text":"We consider the large polaron described by the Fröhlich Hamiltonian and study its energy-momentum relation defined as the lowest possible energy as a function of the total momentum. Using a suitable family of trial states, we derive an optimal parabolic upper bound for the energy-momentum relation in the limit of strong coupling. The upper bound consists of a momentum independent term that agrees with the predicted two-term expansion for the ground state energy of the strongly coupled polaron at rest and a term that is quadratic in the momentum with coefficient given by the inverse of twice the classical effective mass introduced by Landau and Pekar.","lang":"eng"}],"intvolume":" 11","status":"public","title":"Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron","ddc":["500"],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","_id":"13178","file":[{"file_id":"13186","relation":"main_file","success":1,"checksum":"f672eb7dd015c472c9a04f1b9bf9df7d","date_created":"2023-07-03T10:36:25Z","date_updated":"2023-07-03T10:36:25Z","access_level":"open_access","file_name":"2023_ForumofMathematics.Sigma_Mitrouskas.pdf","creator":"alisjak","content_type":"application/pdf","file_size":943192}],"oa_version":"Published Version"},{"file_date_updated":"2023-11-06T09:47:50Z","ec_funded":1,"publication_status":"published","department":[{"_id":"AnKi"}],"publisher":"Annual Reviews","year":"2023","acknowledgement":"We are grateful to Zena Hadjivasiliou for comments on this article. A.K. is supported by grants from the European Research Council under the European Union (EU) Horizon 2020 research and innovation program (680037) and Horizon Europe (101044579), and the Austrian Science Fund (F78) (Stem Cell Modulation). J.B. is supported by the Francis Crick Institute, which receives its core funding from Cancer Research UK (CC001051), the UK Medical Research Council (CC001051), and the Wellcome Trust (CC001051), and by a grant from the European Research Council under the EU Horizon 2020 research and innovation program (742138).","pmid":1,"date_updated":"2023-11-06T09:56:24Z","date_created":"2023-11-05T23:00:53Z","volume":39,"author":[{"id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4509-4998","first_name":"Anna","last_name":"Kicheva","full_name":"Kicheva, Anna"},{"full_name":"Briscoe, James","first_name":"James","last_name":"Briscoe"}],"month":"10","publication_identifier":{"eissn":["1530-8995"],"issn":["1081-0706"]},"quality_controlled":"1","project":[{"call_identifier":"H2020","name":"Coordination of Patterning And Growth In the Spinal Cord","_id":"B6FC0238-B512-11E9-945C-1524E6697425","grant_number":"680037"},{"name":"Mechanisms of tissue size regulation in spinal cord development","grant_number":"101044579","_id":"bd7e737f-d553-11ed-ba76-d69ffb5ee3aa"},{"grant_number":"F07802","_id":"059DF620-7A3F-11EA-A408-12923DDC885E","name":"Morphogen control of growth and pattern in the spinal cord"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37418774"]},"language":[{"iso":"eng"}],"doi":"10.1146/annurev-cellbio-020823-011522","type":"journal_article","abstract":[{"text":"Intercellular signaling molecules, known as morphogens, act at a long range in developing tissues to provide spatial information and control properties such as cell fate and tissue growth. The production, transport, and removal of morphogens shape their concentration profiles in time and space. Downstream signaling cascades and gene regulatory networks within cells then convert the spatiotemporal morphogen profiles into distinct cellular responses. Current challenges are to understand the diverse molecular and cellular mechanisms underlying morphogen gradient formation, as well as the logic of downstream regulatory circuits involved in morphogen interpretation. This knowledge, combining experimental and theoretical results, is essential to understand emerging properties of morphogen-controlled systems, such as robustness and scaling.","lang":"eng"}],"title":"Control of tissue development by morphogens","status":"public","ddc":["570"],"intvolume":" 39","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14484","file":[{"relation":"main_file","file_id":"14491","checksum":"461726014cf5907010afbd418d3c13ec","success":1,"date_created":"2023-11-06T09:47:50Z","date_updated":"2023-11-06T09:47:50Z","access_level":"open_access","file_name":"2023_AnnualReviews_Kicheva.pdf","file_size":434819,"content_type":"application/pdf","creator":"dernst"}],"oa_version":"Published Version","scopus_import":"1","day":"16","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","article_type":"review","page":"91-121","publication":"Annual Review of Cell and Developmental Biology","citation":{"ieee":"A. Kicheva and J. Briscoe, “Control of tissue development by morphogens,” Annual Review of Cell and Developmental Biology, vol. 39. Annual Reviews, pp. 91–121, 2023.","apa":"Kicheva, A., & Briscoe, J. (2023). Control of tissue development by morphogens. Annual Review of Cell and Developmental Biology. Annual Reviews. https://doi.org/10.1146/annurev-cellbio-020823-011522","ista":"Kicheva A, Briscoe J. 2023. Control of tissue development by morphogens. Annual Review of Cell and Developmental Biology. 39, 91–121.","ama":"Kicheva A, Briscoe J. Control of tissue development by morphogens. Annual Review of Cell and Developmental Biology. 2023;39:91-121. doi:10.1146/annurev-cellbio-020823-011522","chicago":"Kicheva, Anna, and James Briscoe. “Control of Tissue Development by Morphogens.” Annual Review of Cell and Developmental Biology. Annual Reviews, 2023. https://doi.org/10.1146/annurev-cellbio-020823-011522.","short":"A. Kicheva, J. Briscoe, Annual Review of Cell and Developmental Biology 39 (2023) 91–121.","mla":"Kicheva, Anna, and James Briscoe. “Control of Tissue Development by Morphogens.” Annual Review of Cell and Developmental Biology, vol. 39, Annual Reviews, 2023, pp. 91–121, doi:10.1146/annurev-cellbio-020823-011522."},"date_published":"2023-10-16T00:00:00Z"},{"author":[{"last_name":"Rao","first_name":"Pramod","full_name":"Rao, Pramod"},{"full_name":"Mallikarjun, B. R.","last_name":"Mallikarjun","first_name":"B. R."},{"full_name":"Fox, Gereon","first_name":"Gereon","last_name":"Fox"},{"first_name":"Tim","last_name":"Weyrich","full_name":"Weyrich, Tim"},{"last_name":"Bickel","first_name":"Bernd","orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bickel, Bernd"},{"full_name":"Pfister, Hanspeter","first_name":"Hanspeter","last_name":"Pfister"},{"last_name":"Matusik","first_name":"Wojciech","full_name":"Matusik, Wojciech"},{"last_name":"Zhan","first_name":"Fangneng","full_name":"Zhan, Fangneng"},{"last_name":"Tewari","first_name":"Ayush","full_name":"Tewari, Ayush"},{"full_name":"Theobalt, Christian","first_name":"Christian","last_name":"Theobalt"},{"last_name":"Elgharib","first_name":"Mohamed","full_name":"Elgharib, Mohamed"}],"date_updated":"2023-11-06T08:52:30Z","date_created":"2023-11-05T23:00:54Z","oa_version":"Published Version","year":"2023","_id":"14488","acknowledgement":"Open Access funding enabled and organized by Projekt DEAL.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"epub_ahead","title":"A deeper analysis of volumetric relightiable faces","status":"public","publisher":"Springer Nature","department":[{"_id":"BeBi"}],"abstract":[{"text":"Portrait viewpoint and illumination editing is an important problem with several applications in VR/AR, movies, and photography. Comprehensive knowledge of geometry and illumination is critical for obtaining photorealistic results. Current methods are unable to explicitly model in 3D while handling both viewpoint and illumination editing from a single image. In this paper, we propose VoRF, a novel approach that can take even a single portrait image as input and relight human heads under novel illuminations that can be viewed from arbitrary viewpoints. VoRF represents a human head as a continuous volumetric field and learns a prior model of human heads using a coordinate-based MLP with individual latent spaces for identity and illumination. The prior model is learned in an auto-decoder manner over a diverse class of head shapes and appearances, allowing VoRF to generalize to novel test identities from a single input image. Additionally, VoRF has a reflectance MLP that uses the intermediate features of the prior model for rendering One-Light-at-A-Time (OLAT) images under novel views. We synthesize novel illuminations by combining these OLAT images with target environment maps. Qualitative and quantitative evaluations demonstrate the effectiveness of VoRF for relighting and novel view synthesis, even when applied to unseen subjects under uncontrolled illumination. This work is an extension of Rao et al. (VoRF: Volumetric Relightable Faces 2022). We provide extensive evaluation and ablative studies of our model and also provide an application, where any face can be relighted using textual input.","lang":"eng"}],"type":"journal_article","doi":"10.1007/s11263-023-01899-3","date_published":"2023-10-31T00:00:00Z","language":[{"iso":"eng"}],"publication":"International Journal of Computer Vision","citation":{"ama":"Rao P, Mallikarjun BR, Fox G, et al. A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision. 2023. doi:10.1007/s11263-023-01899-3","ieee":"P. Rao et al., “A deeper analysis of volumetric relightiable faces,” International Journal of Computer Vision. Springer Nature, 2023.","apa":"Rao, P., Mallikarjun, B. R., Fox, G., Weyrich, T., Bickel, B., Pfister, H., … Elgharib, M. (2023). A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision. Springer Nature. https://doi.org/10.1007/s11263-023-01899-3","ista":"Rao P, Mallikarjun BR, Fox G, Weyrich T, Bickel B, Pfister H, Matusik W, Zhan F, Tewari A, Theobalt C, Elgharib M. 2023. A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision.","short":"P. Rao, B.R. Mallikarjun, G. Fox, T. Weyrich, B. Bickel, H. Pfister, W. Matusik, F. Zhan, A. Tewari, C. Theobalt, M. Elgharib, International Journal of Computer Vision (2023).","mla":"Rao, Pramod, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” International Journal of Computer Vision, Springer Nature, 2023, doi:10.1007/s11263-023-01899-3.","chicago":"Rao, Pramod, B. R. Mallikarjun, Gereon Fox, Tim Weyrich, Bernd Bickel, Hanspeter Pfister, Wojciech Matusik, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” International Journal of Computer Vision. Springer Nature, 2023. https://doi.org/10.1007/s11263-023-01899-3."},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s11263-023-01899-3"}],"oa":1,"quality_controlled":"1","article_type":"original","month":"10","day":"31","article_processing_charge":"Yes (via OA deal)","publication_identifier":{"eissn":["1573-1405"],"issn":["0920-5691"]},"scopus_import":"1"},{"article_type":"original","citation":{"short":"P. Buri, S. Fatichi, T. Shaw, E.S. Miles, M. McCarthy, C.L. Fyffe, S. Fugger, S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, Water Resources Research 59 (2023).","mla":"Buri, Pascal, et al. “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High-Elevation Catchment.” Water Resources Research, vol. 59, no. 10, e2022WR033841, Wiley, 2023, doi:10.1029/2022WR033841.","chicago":"Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan S. Miles, Michael McCarthy, Catriona Louise Fyffe, Stefan Fugger, et al. “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High-Elevation Catchment.” Water Resources Research. Wiley, 2023. https://doi.org/10.1029/2022WR033841.","ama":"Buri P, Fatichi S, Shaw T, et al. Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. Water Resources Research. 2023;59(10). doi:10.1029/2022WR033841","apa":"Buri, P., Fatichi, S., Shaw, T., Miles, E. S., McCarthy, M., Fyffe, C. L., … Pellicciotti, F. (2023). Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. Water Resources Research. Wiley. https://doi.org/10.1029/2022WR033841","ieee":"P. Buri et al., “Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment,” Water Resources Research, vol. 59, no. 10. Wiley, 2023.","ista":"Buri P, Fatichi S, Shaw T, Miles ES, McCarthy M, Fyffe CL, Fugger S, Ren S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. Water Resources Research. 59(10), e2022WR033841."},"publication":"Water Resources Research","date_published":"2023-10-25T00:00:00Z","scopus_import":"1","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","day":"25","intvolume":" 59","ddc":["550"],"title":"Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14487","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2023_WaterResourcesResearch_Buri.pdf","content_type":"application/pdf","file_size":5554901,"creator":"dernst","relation":"main_file","file_id":"14495","checksum":"7ba9c87228dc09029b16bc800a0ef1a1","success":1,"date_updated":"2023-11-07T08:10:44Z","date_created":"2023-11-07T08:10:44Z"}],"type":"journal_article","issue":"10","abstract":[{"lang":"eng","text":"High Mountain Asia (HMA) is among the most vulnerable water towers globally and yet future projections of water availability in and from its high-mountain catchments remain uncertain, as their hydrologic response to ongoing environmental changes is complex. Mechanistic modeling approaches incorporating cryospheric, hydrological, and vegetation processes in high spatial, temporal, and physical detail have never been applied for high-elevation catchments of HMA. We use a land surface model at high spatial and temporal resolution (100 m and hourly) to simulate the coupled dynamics of energy, water, and vegetation for the 350 km2 Langtang catchment (Nepal). We compare our model outputs for one hydrological year against a large set of observations to gain insight into the partitioning of the water balance at the subseasonal scale and across elevation bands. During the simulated hydrological year, we find that evapotranspiration is a key component of the total water balance, as it causes about the equivalent of 20% of all the available precipitation or 154% of the water production from glacier melt in the basin to return directly to the atmosphere. The depletion of the cryospheric water budget is dominated by snow melt, but at high elevations is primarily dictated by snow and ice sublimation. Snow sublimation is the dominant vapor flux (49%) at the catchment scale, accounting for the equivalent of 11% of snowfall, 17% of snowmelt, and 75% of ice melt, respectively. We conclude that simulations should consider sublimation and other evaporative fluxes explicitly, as otherwise water balance estimates can be ill-quantified."}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1029/2022WR033841","publication_identifier":{"eissn":["1944-7973"],"issn":["0043-1397"]},"month":"10","publisher":"Wiley","department":[{"_id":"FrPe"}],"publication_status":"published","year":"2023","acknowledgement":"This project has received funding from the JSPS-SNSF (Japan Society for the Promotion of Science and Swiss National Science Foundation) Bilateral Programmes project (HOPE, High-ele-vation precipitation in High Mountain Asia; Grant 183633), and the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (RAVEN, Rapid mass losses of debris-covered glaciers in High Mountain Asia; Grant 772751). We want to thank in particular T. Gurung, S. Joshi, J. Shea, W. Immerzeel, and others involved, as well as ICIMOD, for their efforts over the past years in observing the meteorology of the Langtang catchment, collecting and organizing the data and making them publicly available. We also thank the National Geographic Society (Grant NGS-61784R-19) and the Mount Everest Foundation (reference 19-24) for providing fieldwork funding for C. L. Fyffe. We thank T. Kramer for help with the WSL Hyperion cluster. We are grate-ful for comments by three anonymous reviewers and the Associate Editor, who greatly helped to improve the manuscript further. Open access funding provided by ETH-Bereich Forschungsanstalten.","volume":59,"date_created":"2023-11-05T23:00:53Z","date_updated":"2023-11-07T08:12:34Z","related_material":{"record":[{"id":"14494","relation":"research_data","status":"public"}]},"author":[{"last_name":"Buri","first_name":"Pascal","full_name":"Buri, Pascal"},{"full_name":"Fatichi, Simone","last_name":"Fatichi","first_name":"Simone"},{"id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw","first_name":"Thomas","full_name":"Shaw, Thomas"},{"full_name":"Miles, Evan S.","first_name":"Evan S.","last_name":"Miles"},{"full_name":"Mccarthy, Michael","first_name":"Michael","last_name":"Mccarthy","id":"22a2674a-61ce-11ee-94b5-d18813baf16f"},{"full_name":"Fyffe, Catriona Louise","id":"001b0422-8d15-11ed-bc51-cab6c037a228","first_name":"Catriona Louise","last_name":"Fyffe"},{"full_name":"Fugger, Stefan","last_name":"Fugger","first_name":"Stefan"},{"last_name":"Ren","first_name":"Shaoting","full_name":"Ren, Shaoting"},{"last_name":"Kneib","first_name":"Marin","full_name":"Kneib, Marin"},{"full_name":"Jouberton, Achille","first_name":"Achille","last_name":"Jouberton"},{"last_name":"Steiner","first_name":"Jakob","full_name":"Steiner, Jakob"},{"first_name":"Koji","last_name":"Fujita","full_name":"Fujita, Koji"},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087","first_name":"Francesca","last_name":"Pellicciotti"}],"article_number":"e2022WR033841","file_date_updated":"2023-11-07T08:10:44Z"},{"article_number":"35","file_date_updated":"2023-11-06T11:45:21Z","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","department":[{"_id":"GradSch"}],"publication_status":"published","year":"2023","volume":281,"date_created":"2023-11-05T23:00:53Z","date_updated":"2023-11-07T07:48:01Z","author":[{"full_name":"Aksenov, Vitaly","first_name":"Vitaly","last_name":"Aksenov"},{"last_name":"Anoprenko","first_name":"Michael","full_name":"Anoprenko, Michael"},{"full_name":"Fedorov, Alexander","last_name":"Fedorov","first_name":"Alexander","id":"2e711909-896a-11ed-bdf8-eb0f5a2984c6"},{"last_name":"Spear","first_name":"Michael","full_name":"Spear, Michael"}],"publication_identifier":{"isbn":["9783959773010"],"issn":["1868-8969"]},"month":"10","quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"language":[{"iso":"eng"}],"doi":"10.4230/LIPIcs.DISC.2023.35","conference":{"name":"DISC: Symposium on Distributed Computing","start_date":"2023-10-09","location":"L'Aquila, Italy","end_date":"2023-10-13"},"alternative_title":["LIPIcs"],"type":"conference","abstract":[{"text":"Batching is a technique that stores multiple keys/values in each node of a data structure. In sequential search data structures, batching reduces latency by reducing the number of cache misses and shortening the chain of pointers to dereference. Applying batching to concurrent data structures is challenging, because it is difficult to maintain the search property and keep contention low in the presence of batching.\r\nIn this paper, we present a general methodology for leveraging batching in concurrent search data structures, called BatchBoost. BatchBoost builds a search data structure from distinct \"data\" and \"index\" layers. The data layer’s purpose is to store a batch of key/value pairs in each of its nodes. The index layer uses an unmodified concurrent search data structure to route operations to a position in the data layer that is \"close\" to where the corresponding key should exist. The requirements on the index and data layers are low: with minimal effort, we were able to compose three highly scalable concurrent search data structures based on three original data structures as the index layers with a batched version of the Lazy List as the data layer. The resulting BatchBoost data structures provide significant performance improvements over their original counterparts.","lang":"eng"}],"intvolume":" 281","ddc":["000"],"status":"public","title":"Brief announcement: BatchBoost: Universal batching for concurrent data structures","_id":"14485","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2023_LIPIcs_Aksenov.pdf","file_size":646665,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"14492","checksum":"d9f8d2915cccdf2df5905b7cd1b4a560","success":1,"date_created":"2023-11-06T11:45:21Z","date_updated":"2023-11-06T11:45:21Z"}],"scopus_import":"1","has_accepted_license":"1","article_processing_charge":"Yes","day":"01","citation":{"ista":"Aksenov V, Anoprenko M, Fedorov A, Spear M. 2023. Brief announcement: BatchBoost: Universal batching for concurrent data structures. 37th International Symposium on Distributed Computing. DISC: Symposium on Distributed Computing, LIPIcs, vol. 281, 35.","apa":"Aksenov, V., Anoprenko, M., Fedorov, A., & Spear, M. (2023). Brief announcement: BatchBoost: Universal batching for concurrent data structures. In 37th International Symposium on Distributed Computing (Vol. 281). L’Aquila, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.DISC.2023.35","ieee":"V. Aksenov, M. Anoprenko, A. Fedorov, and M. Spear, “Brief announcement: BatchBoost: Universal batching for concurrent data structures,” in 37th International Symposium on Distributed Computing, L’Aquila, Italy, 2023, vol. 281.","ama":"Aksenov V, Anoprenko M, Fedorov A, Spear M. Brief announcement: BatchBoost: Universal batching for concurrent data structures. In: 37th International Symposium on Distributed Computing. Vol 281. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.DISC.2023.35","chicago":"Aksenov, Vitaly, Michael Anoprenko, Alexander Fedorov, and Michael Spear. “Brief Announcement: BatchBoost: Universal Batching for Concurrent Data Structures.” In 37th International Symposium on Distributed Computing, Vol. 281. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.DISC.2023.35.","mla":"Aksenov, Vitaly, et al. “Brief Announcement: BatchBoost: Universal Batching for Concurrent Data Structures.” 37th International Symposium on Distributed Computing, vol. 281, 35, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.DISC.2023.35.","short":"V. Aksenov, M. Anoprenko, A. Fedorov, M. Spear, in:, 37th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023."},"publication":"37th International Symposium on Distributed Computing","date_published":"2023-10-01T00:00:00Z"},{"type":"journal_article","abstract":[{"lang":"eng","text":"We present a minimal model of ferroelectric large polarons, which are suggested as one of the mechanisms responsible for the unique charge transport properties of hybrid perovskites. We demonstrate that short-ranged charge–rotor interactions lead to long-range ferroelectric ordering of rotors, which strongly affects the carrier mobility. In the nonperturbative regime, where our theory cannot be reduced to any of the earlier models, we reveal that the polaron is characterized by large coherence length and a roughly tenfold increase of the effective mass as compared to the bare mass. These results are in good agreement with other theoretical predictions for ferroelectric polarons. Our model establishes a general phenomenological framework for ferroelectric polarons providing the starting point for future studies of their role in the transport properties of hybrid organic-inorganic perovskites."}],"issue":"4","ddc":["530"],"title":"Rotor lattice model of ferroelectric large polarons","status":"public","intvolume":" 5","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14486","file":[{"file_id":"14493","relation":"main_file","success":1,"checksum":"cb8de8fed6e09df1a18bd5a5aec5c55c","date_created":"2023-11-07T07:52:46Z","date_updated":"2023-11-07T07:52:46Z","access_level":"open_access","file_name":"2023_PhysReviewResearch_Koutentakis.pdf","creator":"dernst","content_type":"application/pdf","file_size":1127522}],"oa_version":"Published Version","scopus_import":"1","day":"05","article_processing_charge":"Yes","has_accepted_license":"1","article_type":"original","publication":"Physical Review Research","citation":{"ama":"Koutentakis G, Ghazaryan A, Lemeshko M. Rotor lattice model of ferroelectric large polarons. Physical Review Research. 2023;5(4). doi:10.1103/PhysRevResearch.5.043016","ieee":"G. Koutentakis, A. Ghazaryan, and M. Lemeshko, “Rotor lattice model of ferroelectric large polarons,” Physical Review Research, vol. 5, no. 4. American Physical Society, 2023.","apa":"Koutentakis, G., Ghazaryan, A., & Lemeshko, M. (2023). Rotor lattice model of ferroelectric large polarons. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.5.043016","ista":"Koutentakis G, Ghazaryan A, Lemeshko M. 2023. Rotor lattice model of ferroelectric large polarons. Physical Review Research. 5(4), 043016.","short":"G. Koutentakis, A. Ghazaryan, M. Lemeshko, Physical Review Research 5 (2023).","mla":"Koutentakis, Georgios, et al. “Rotor Lattice Model of Ferroelectric Large Polarons.” Physical Review Research, vol. 5, no. 4, 043016, American Physical Society, 2023, doi:10.1103/PhysRevResearch.5.043016.","chicago":"Koutentakis, Georgios, Areg Ghazaryan, and Mikhail Lemeshko. “Rotor Lattice Model of Ferroelectric Large Polarons.” Physical Review Research. American Physical Society, 2023. https://doi.org/10.1103/PhysRevResearch.5.043016."},"date_published":"2023-10-05T00:00:00Z","article_number":"043016","file_date_updated":"2023-11-07T07:52:46Z","ec_funded":1,"publication_status":"published","publisher":"American Physical Society","department":[{"_id":"MiLe"}],"acknowledgement":"We thank Zh. Alpichshev, A. Volosniev, and A. V. Zampetaki for fruitful discussions and comments. This project received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. M.L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON).","year":"2023","date_created":"2023-11-05T23:00:53Z","date_updated":"2023-11-07T07:53:39Z","volume":5,"author":[{"id":"d7b23d3a-9e21-11ec-b482-f76739596b95","last_name":"Koutentakis","first_name":"Georgios","full_name":"Koutentakis, Georgios"},{"id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9666-3543","first_name":"Areg","last_name":"Ghazaryan","full_name":"Ghazaryan, Areg"},{"full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","first_name":"Mikhail","last_name":"Lemeshko"}],"month":"10","publication_identifier":{"issn":["2643-1564"]},"quality_controlled":"1","project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"name":"Angulon: physics and applications of a new quasiparticle","call_identifier":"H2020","grant_number":"801770","_id":"2688CF98-B435-11E9-9278-68D0E5697425"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2301.09875"]},"language":[{"iso":"eng"}],"doi":"10.1103/PhysRevResearch.5.043016"},{"type":"journal_article","abstract":[{"text":"To respond to auxin, the chief orchestrator of their multicellularity, plants evolved multiple receptor systems and signal transduction cascades. Despite decades of research, however, we are still lacking a satisfactory synthesis of various auxin signaling mechanisms. The chief discrepancy and historical controversy of the field is that of rapid and slow auxin effects on plant physiology and development. How is it possible that ions begin to trickle across the plasma membrane as soon as auxin enters the cell, even though the best-characterized transcriptional auxin pathway can take effect only after tens of minutes? Recently, unexpected progress has been made in understanding this and other unknowns of auxin signaling. We provide a perspective on these exciting developments and concepts whose general applicability might have ramifications beyond auxin signaling.","lang":"eng"}],"issue":"10","ddc":["580"],"status":"public","title":"Rapid auxin signaling: Unknowns old and new","intvolume":" 75","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14313","file":[{"file_id":"14482","relation":"main_file","success":1,"checksum":"1c476c3414d2dfb0c85db0cb6cfd8a28","date_updated":"2023-11-02T17:03:20Z","date_created":"2023-11-02T17:03:20Z","access_level":"open_access","file_name":"Fiedler CurrOpinOlantBiol 2023_revised.pdf","creator":"amally","file_size":737872,"content_type":"application/pdf"}],"oa_version":"Submitted Version","scopus_import":"1","day":"01","has_accepted_license":"1","article_processing_charge":"No","article_type":"review","publication":"Current Opinion in Plant Biology","citation":{"chicago":"Fiedler, Lukas, and Jiří Friml. “Rapid Auxin Signaling: Unknowns Old and New.” Current Opinion in Plant Biology. Elsevier, 2023. https://doi.org/10.1016/j.pbi.2023.102443.","short":"L. Fiedler, J. Friml, Current Opinion in Plant Biology 75 (2023).","mla":"Fiedler, Lukas, and Jiří Friml. “Rapid Auxin Signaling: Unknowns Old and New.” Current Opinion in Plant Biology, vol. 75, no. 10, 102443, Elsevier, 2023, doi:10.1016/j.pbi.2023.102443.","ieee":"L. Fiedler and J. Friml, “Rapid auxin signaling: Unknowns old and new,” Current Opinion in Plant Biology, vol. 75, no. 10. Elsevier, 2023.","apa":"Fiedler, L., & Friml, J. (2023). Rapid auxin signaling: Unknowns old and new. Current Opinion in Plant Biology. Elsevier. https://doi.org/10.1016/j.pbi.2023.102443","ista":"Fiedler L, Friml J. 2023. Rapid auxin signaling: Unknowns old and new. Current Opinion in Plant Biology. 75(10), 102443.","ama":"Fiedler L, Friml J. Rapid auxin signaling: Unknowns old and new. Current Opinion in Plant Biology. 2023;75(10). doi:10.1016/j.pbi.2023.102443"},"date_published":"2023-10-01T00:00:00Z","article_number":"102443","file_date_updated":"2023-11-02T17:03:20Z","publication_status":"published","department":[{"_id":"JiFr"}],"publisher":"Elsevier","acknowledgement":"The opening quote is not intended to reflect any political views of the authors. The authors by no means endorse the rhetoric of Donald Rumsfeld or the 2003 invasion of Iraq by the United States. Nevertheless, Rumsfeld's quote led to both public and academic debates on the concept of known and unknown unknowns, which can be applied to the recent unexpected developments in the auxin signaling field. We thank Linlin Qi and Huihuang Chen for their suggestions on figure presentation and inspiring discussions of TIR1/AFB signaling. Finally, we thank Aroosa Hussain for discussion of Greek mythology.","year":"2023","pmid":1,"date_created":"2023-09-10T22:01:11Z","date_updated":"2023-11-07T08:17:13Z","volume":75,"author":[{"id":"7c417475-8972-11ed-ae7b-8b674ca26986","first_name":"Lukas","last_name":"Fiedler","full_name":"Fiedler, Lukas"},{"full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","first_name":"Jiří"}],"month":"10","publication_identifier":{"issn":["1369-5266"]},"quality_controlled":"1","oa":1,"external_id":{"pmid":["37666097"]},"language":[{"iso":"eng"}],"doi":"10.1016/j.pbi.2023.102443"},{"abstract":[{"text":"We provide i) gridded initial conditions (.tif), ii) modeled gridded monthly outputs (.tif), and iii) modeled hourly outputs at the station locations (.txt) for the hydrological year 2019. Information about the variables and units can be found in the figures (.png) associated to each dataset. Details about the datasets can be found in the original publication by Buri and others (2023).\r\n\r\nBuri, P., Fatichi, S., Shaw, T. E., Miles, E. S., McCarthy, M. J., Fyffe, C. L., ... & Pellicciotti, F. (2023). Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High‐Elevation Catchment. Water Resources Research, 59(10), e2022WR033841. DOI: 10.1029/2022WR033841","lang":"eng"}],"license":"https://creativecommons.org/publicdomain/zero/1.0/","type":"research_data_reference","author":[{"first_name":"Pascal","last_name":"Buri","full_name":"Buri, Pascal"},{"first_name":"Simone","last_name":"Fatichi","full_name":"Fatichi, Simone"},{"last_name":"Shaw","first_name":"Thomas","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","full_name":"Shaw, Thomas"},{"last_name":"Miles","first_name":"Evan ","full_name":"Miles, Evan "},{"full_name":"McCarthy, Michael","last_name":"McCarthy","first_name":"Michael","id":"22a2674a-61ce-11ee-94b5-d18813baf16f"},{"last_name":"Fyffe","first_name":"Catriona Louise","id":"001b0422-8d15-11ed-bc51-cab6c037a228","full_name":"Fyffe, Catriona Louise"},{"last_name":"Fugger","first_name":"Stefan","full_name":"Fugger, Stefan"},{"first_name":"Shaoting","last_name":"Ren","full_name":"Ren, Shaoting"},{"last_name":"Kneib","first_name":"Marin","full_name":"Kneib, Marin"},{"last_name":"Jouberton","first_name":"Achille","full_name":"Jouberton, Achille"},{"last_name":"Steiner","first_name":"Jakob","full_name":"Steiner, Jakob"},{"last_name":"Fujita","first_name":"Koji","full_name":"Fujita, Koji"},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087","first_name":"Francesca","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca"}],"related_material":{"record":[{"id":"14487","status":"public","relation":"used_in_publication"}]},"date_updated":"2023-11-07T08:12:35Z","date_created":"2023-11-07T08:01:39Z","oa_version":"Published Version","_id":"14494","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","ddc":["550"],"status":"public","title":"Model output data to \"Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment\"","department":[{"_id":"FrPe"}],"publisher":"Zenodo","month":"10","day":"03","article_processing_charge":"No","has_accepted_license":"1","doi":"10.5281/ZENODO.8402426","date_published":"2023-10-03T00:00:00Z","citation":{"ieee":"P. Buri et al., “Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.’” Zenodo, 2023.","apa":"Buri, P., Fatichi, S., Shaw, T., Miles, E., McCarthy, M., Fyffe, C. L., … Pellicciotti, F. (2023). Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” Zenodo. https://doi.org/10.5281/ZENODO.8402426","ista":"Buri P, Fatichi S, Shaw T, Miles E, McCarthy M, Fyffe CL, Fugger S, Ren S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment’, Zenodo, 10.5281/ZENODO.8402426.","ama":"Buri P, Fatichi S, Shaw T, et al. Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” 2023. doi:10.5281/ZENODO.8402426","chicago":"Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan Miles, Michael McCarthy, Catriona Louise Fyffe, Stefan Fugger, et al. “Model Output Data to ‘Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.’” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8402426.","short":"P. Buri, S. Fatichi, T. Shaw, E. Miles, M. McCarthy, C.L. Fyffe, S. Fugger, S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, (2023).","mla":"Buri, Pascal, et al. Model Output Data to “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.” Zenodo, 2023, doi:10.5281/ZENODO.8402426."},"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"main_file_link":[{"url":"https://10.5281/ZENODO.8402426","open_access":"1"}],"oa":1},{"file_date_updated":"2023-11-07T09:16:23Z","article_number":"e21","volume":11,"date_created":"2023-11-07T09:02:48Z","date_updated":"2023-11-07T09:18:57Z","author":[{"id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","orcid":"0000-0002-4003-7567","first_name":"Matthew Alan","last_name":"Kwan","full_name":"Kwan, Matthew Alan"},{"full_name":"Sah, Ashwin","first_name":"Ashwin","last_name":"Sah"},{"last_name":"Sauermann","first_name":"Lisa","full_name":"Sauermann, Lisa"},{"last_name":"Sawhney","first_name":"Mehtaab","full_name":"Sawhney, Mehtaab"}],"publisher":"Cambridge University Press","department":[{"_id":"MaKw"}],"publication_status":"published","acknowledgement":"Kwan was supported for part of this work by ERC Starting Grant ‘RANDSTRUCT’ No. 101076777. Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-2141064. Sah was supported by the PD Soros Fellowship. Sauermann was supported by NSF Award DMS-2100157, and for part of this work by a Sloan Research Fellowship.","year":"2023","publication_identifier":{"issn":["2050-5086"]},"month":"08","language":[{"iso":"eng"}],"doi":"10.1017/fmp.2023.17","project":[{"name":"Randomness and structure in combinatorics","grant_number":"101076777","_id":"bd95085b-d553-11ed-ba76-e55d3349be45"}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2208.02874"]},"abstract":[{"lang":"eng","text":"An n-vertex graph is called C-Ramsey if it has no clique or independent set of size Clog2n (i.e., if it has near-optimal Ramsey behavior). In this paper, we study edge statistics in Ramsey graphs, in particular obtaining very precise control of the distribution of the number of edges in a random vertex subset of a C-Ramsey graph. This brings together two ongoing lines of research: the study of ‘random-like’ properties of Ramsey graphs and the study of small-ball probability for low-degree polynomials of independent random variables.\r\n\r\nThe proof proceeds via an ‘additive structure’ dichotomy on the degree sequence and involves a wide range of different tools from Fourier analysis, random matrix theory, the theory of Boolean functions, probabilistic combinatorics and low-rank approximation. In particular, a key ingredient is a new sharpened version of the quadratic Carbery–Wright theorem on small-ball probability for polynomials of Gaussians, which we believe is of independent interest. One of the consequences of our result is the resolution of an old conjecture of Erdős and McKay, for which Erdős reiterated in several of his open problem collections and for which he offered one of his notorious monetary prizes."}],"type":"journal_article","file":[{"date_updated":"2023-11-07T09:16:23Z","date_created":"2023-11-07T09:16:23Z","checksum":"54b824098d59073cc87a308d458b0a3e","success":1,"relation":"main_file","file_id":"14500","content_type":"application/pdf","file_size":1218719,"creator":"dernst","file_name":"2023_ForumMathematics_Kwan.pdf","access_level":"open_access"}],"oa_version":"Published Version","intvolume":" 11","status":"public","ddc":["510"],"title":"Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture","_id":"14499","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","article_processing_charge":"Yes","day":"24","keyword":["Discrete Mathematics and Combinatorics","Geometry and Topology","Mathematical Physics","Statistics and Probability","Algebra and Number Theory","Analysis"],"scopus_import":"1","date_published":"2023-08-24T00:00:00Z","article_type":"original","citation":{"ama":"Kwan MA, Sah A, Sauermann L, Sawhney M. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. 2023;11. doi:10.1017/fmp.2023.17","apa":"Kwan, M. A., Sah, A., Sauermann, L., & Sawhney, M. (2023). Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. Cambridge University Press. https://doi.org/10.1017/fmp.2023.17","ieee":"M. A. Kwan, A. Sah, L. Sauermann, and M. Sawhney, “Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture,” Forum of Mathematics, Pi, vol. 11. Cambridge University Press, 2023.","ista":"Kwan MA, Sah A, Sauermann L, Sawhney M. 2023. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. 11, e21.","short":"M.A. Kwan, A. Sah, L. Sauermann, M. Sawhney, Forum of Mathematics, Pi 11 (2023).","mla":"Kwan, Matthew Alan, et al. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” Forum of Mathematics, Pi, vol. 11, e21, Cambridge University Press, 2023, doi:10.1017/fmp.2023.17.","chicago":"Kwan, Matthew Alan, Ashwin Sah, Lisa Sauermann, and Mehtaab Sawhney. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” Forum of Mathematics, Pi. Cambridge University Press, 2023. https://doi.org/10.1017/fmp.2023.17."},"publication":"Forum of Mathematics, Pi"},{"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14513","title":"Few-body Bose gases in low dimensions - A laboratory for quantum dynamics","status":"public","intvolume":" 1042","abstract":[{"lang":"eng","text":"Cold atomic gases have become a paradigmatic system for exploring fundamental physics, which at the same time allows for applications in quantum technologies. The accelerating developments in the field have led to a highly advanced set of engineering techniques that, for example, can tune interactions, shape the external geometry, select among a large set of atomic species with different properties, or control the number of atoms. In particular, it is possible to operate in lower dimensions and drive atomic systems into the strongly correlated regime. In this review, we discuss recent advances in few-body cold atom systems confined in low dimensions from a theoretical viewpoint. We mainly focus on bosonic systems in one dimension and provide an introduction to the static properties before we review the state-of-the-art research into quantum dynamical processes stimulated by the presence of correlations. Besides discussing the fundamental physical phenomena arising in these systems, we also provide an overview of the calculational and numerical tools and methods that are commonly used, thus delivering a balanced and comprehensive overview of the field. We conclude by giving an outlook on possible future directions that are interesting to explore in these correlated systems."}],"type":"journal_article","date_published":"2023-11-29T00:00:00Z","publication":"Physics Reports","citation":{"ista":"Mistakidis SI, Volosniev A, Barfknecht RE, Fogarty T, Busch T, Foerster A, Schmelcher P, Zinner NT. 2023. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. 1042, 1–108.","apa":"Mistakidis, S. I., Volosniev, A., Barfknecht, R. E., Fogarty, T., Busch, T., Foerster, A., … Zinner, N. T. (2023). Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. Elsevier. https://doi.org/10.1016/j.physrep.2023.10.004","ieee":"S. I. Mistakidis et al., “Few-body Bose gases in low dimensions - A laboratory for quantum dynamics,” Physics Reports, vol. 1042. Elsevier, pp. 1–108, 2023.","ama":"Mistakidis SI, Volosniev A, Barfknecht RE, et al. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. 2023;1042:1-108. doi:10.1016/j.physrep.2023.10.004","chicago":"Mistakidis, S. I., Artem Volosniev, R. E. Barfknecht, T. Fogarty, Th Busch, A. Foerster, P. Schmelcher, and N. T. Zinner. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” Physics Reports. Elsevier, 2023. https://doi.org/10.1016/j.physrep.2023.10.004.","mla":"Mistakidis, S. I., et al. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” Physics Reports, vol. 1042, Elsevier, 2023, pp. 1–108, doi:10.1016/j.physrep.2023.10.004.","short":"S.I. Mistakidis, A. Volosniev, R.E. Barfknecht, T. Fogarty, T. Busch, A. Foerster, P. Schmelcher, N.T. Zinner, Physics Reports 1042 (2023) 1–108."},"article_type":"original","page":"1-108","day":"29","article_processing_charge":"No","scopus_import":"1","author":[{"first_name":"S. I.","last_name":"Mistakidis","full_name":"Mistakidis, S. I."},{"full_name":"Volosniev, Artem","orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","last_name":"Volosniev","first_name":"Artem"},{"full_name":"Barfknecht, R. E.","last_name":"Barfknecht","first_name":"R. E."},{"full_name":"Fogarty, T.","first_name":"T.","last_name":"Fogarty"},{"full_name":"Busch, Th","first_name":"Th","last_name":"Busch"},{"full_name":"Foerster, A.","first_name":"A.","last_name":"Foerster"},{"full_name":"Schmelcher, P.","last_name":"Schmelcher","first_name":"P."},{"first_name":"N. T.","last_name":"Zinner","full_name":"Zinner, N. T."}],"date_created":"2023-11-12T23:00:54Z","date_updated":"2023-11-13T08:01:57Z","volume":1042,"acknowledgement":"This review could not have been written without the many fruitful discussions and great collaborations with colleagues throughout the years, there are too many to mention. Here we acknowledge conversations regarding the context of the review with Joachim Brand, Fabian Brauneis, Adolfo del Campo, Alberto Cappellaro, Panagiotis Giannakeas, Tommaso Macrí, Oleksandr Marchukov, Lukas Rammelmüller and Manuel Valiente. S. I. M. acknowledges support from the NSF through a grant for ITAMP at Harvard University. T.F. acknowledges support from JSPS KAKENHI Grant Number JP23K03290 and T.F. and Th.B. acknowledge support from the Okinawa Institute for Science and Technology Graduate University, and JST Grant Number JPMJPF2221. A.F. and R. E. B. acknowledge support from CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico) - Edital Universal 406563/2021-7. A. G. V. acknowledges support by European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. P. S. is supported by the Cluster of Excellence ‘Advanced Imaging of Matter’ of the Deutsche Forschungsgemeinschaft (DFG) - EXC2056 - project ID 390715994. N. T. Z. is partially supported by the Independent Research Fund Denmark .","year":"2023","publication_status":"published","department":[{"_id":"MiLe"}],"publisher":"Elsevier","ec_funded":1,"doi":"10.1016/j.physrep.2023.10.004","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2202.11071","open_access":"1"}],"external_id":{"arxiv":["2202.11071"]},"oa":1,"quality_controlled":"1","project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"month":"11","publication_identifier":{"issn":["0370-1573"]}},{"has_accepted_license":"1","article_processing_charge":"No","day":"26","month":"04","date_published":"2023-04-26T00:00:00Z","doi":"10.15479/AT:ISTA:12869","citation":{"ama":"Klausen FR, Lauritsen AB. Research data for: A stochastic cellular automaton model of culture formation. 2023. doi:10.15479/AT:ISTA:12869","ista":"Klausen FR, Lauritsen AB. 2023. Research data for: A stochastic cellular automaton model of culture formation, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12869.","ieee":"F. R. Klausen and A. B. Lauritsen, “Research data for: A stochastic cellular automaton model of culture formation.” Institute of Science and Technology Austria, 2023.","apa":"Klausen, F. R., & Lauritsen, A. B. (2023). Research data for: A stochastic cellular automaton model of culture formation. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12869","mla":"Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. Research Data for: A Stochastic Cellular Automaton Model of Culture Formation. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12869.","short":"F.R. Klausen, A.B. Lauritsen, (2023).","chicago":"Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Research Data for: A Stochastic Cellular Automaton Model of Culture Formation.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12869."},"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"file_date_updated":"2023-04-26T12:30:06Z","abstract":[{"lang":"eng","text":"We introduce a stochastic cellular automaton as a model for culture and border formation. The model can be conceptualized as a game where the expansion rate of cultures is quantified in terms of their area and perimeter in such a way that approximately round cultures get a competitive advantage. We first analyse the model with periodic boundary conditions, where we study how the model can end up in a fixed state, i.e. freezes. Then we implement the model on the European geography with mountains and rivers. We see how the model reproduces some qualitative features of European culture formation, namely that rivers and mountains are more frequently borders between cultures, mountainous regions tend to have higher cultural diversity and the central European plain has less clear cultural borders. "}],"type":"research_data","oa_version":"Published Version","file":[{"creator":"alaurits","content_type":"application/octet-stream","file_size":4567,"file_name":"README.md","access_level":"open_access","date_updated":"2023-04-26T12:30:06Z","date_created":"2023-04-26T12:30:06Z","success":1,"checksum":"85ede12d38bb8d944022a8cba4d719f5","file_id":"12870","relation":"main_file"},{"file_name":"simulations_era=10_flux_varied_europe.zip","access_level":"open_access","creator":"alaurits","file_size":732586731,"content_type":"application/x-zip-compressed","file_id":"12871","relation":"main_file","date_created":"2023-04-26T12:27:34Z","date_updated":"2023-04-26T12:27:34Z","success":1,"checksum":"25bf79452ae895f9c8a20571a096b4c3"},{"relation":"main_file","file_id":"12872","date_created":"2023-04-26T12:29:53Z","date_updated":"2023-04-26T12:29:53Z","checksum":"bca48d80ece73eb169aee7211a4a751a","success":1,"file_name":"simulations_era=10_flux_varied_torus.zip","access_level":"open_access","file_size":1743893150,"content_type":"application/x-zip-compressed","creator":"alaurits"},{"relation":"main_file","file_id":"12873","checksum":"e77a655db15486a387a36362fbf0b665","success":1,"date_created":"2023-04-26T12:29:19Z","date_updated":"2023-04-26T12:29:19Z","access_level":"open_access","file_name":"simulations_era=10_R_varied_torus.zip","content_type":"application/x-zip-compressed","file_size":878391851,"creator":"alaurits"},{"checksum":"8556406513adc4aa2e0417f46680f627","success":1,"date_updated":"2023-04-26T12:30:05Z","date_created":"2023-04-26T12:30:05Z","relation":"main_file","file_id":"12874","content_type":"application/x-zip-compressed","file_size":201652478,"creator":"alaurits","access_level":"open_access","file_name":"simulations_era=100.zip"}],"date_updated":"2023-11-13T07:47:29Z","date_created":"2023-04-26T12:34:49Z","related_material":{"record":[{"relation":"used_in_publication","status":"for_moderation","id":"14505"},{"id":"12890","status":"public","relation":"used_in_publication"}]},"author":[{"full_name":"Klausen, Frederik Ravn","first_name":"Frederik Ravn","last_name":"Klausen"},{"id":"e1a2682f-dc8d-11ea-abe3-81da9ac728f1","orcid":"0000-0003-4476-2288","first_name":"Asbjørn Bækgaard","last_name":"Lauritsen","full_name":"Lauritsen, Asbjørn Bækgaard"}],"department":[{"_id":"GradSch"},{"_id":"RoSe"}],"publisher":"Institute of Science and Technology Austria","title":"Research data for: A stochastic cellular automaton model of culture formation","status":"public","ddc":["000"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12869","acknowledgement":"FRK acknowledges support from the Villum Foundation for support through the QMATH center of Excellence (Grant No. 10059) and the Villum Young Investigator (Grant No. 25452) programs. ","year":"2023"},{"article_number":"054307","year":"2023","acknowledgement":"Thanks to Kim Sneppen, Svend Krøjer, Peter Wildemann, Peter Rasmussen and Kent Bækgaard Lauritsen for discussions and suggestions. FRK acknowledges support from the Villum Foundation for support through the QMATH center of Excellence (Grant No. 10059) and the Villum Young Investigator (Grant No. 25452) programs.","publication_status":"published","department":[{"_id":"GradSch"},{"_id":"RoSe"}],"publisher":"American Physical Society","author":[{"first_name":"Frederik Ravn","last_name":"Klausen","full_name":"Klausen, Frederik Ravn"},{"full_name":"Lauritsen, Asbjørn Bækgaard","id":"e1a2682f-dc8d-11ea-abe3-81da9ac728f1","orcid":"0000-0003-4476-2288","first_name":"Asbjørn Bækgaard","last_name":"Lauritsen"}],"related_material":{"link":[{"url":"https://github.com/FrederikRavnKlausen/model-for-culture-formation","relation":"software"}],"record":[{"id":"12869","status":"public","relation":"research_data"}]},"date_created":"2023-05-04T08:35:01Z","date_updated":"2023-11-13T07:47:30Z","volume":108,"month":"11","publication_identifier":{"issn":["2470-0045"],"eissn":["2470-0053"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2305.02153","open_access":"1"}],"external_id":{"arxiv":["2305.02153"]},"oa":1,"quality_controlled":"1","doi":"10.1103/PhysRevE.108.054307","language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"lang":"eng","text":"We introduce a stochastic cellular automaton as a model for culture and border formation. The model can be conceptualized as a game where the expansion rate of cultures is quantified in terms of their area and perimeter in such a way that approximately geometrically round cultures get a competitive advantage. We first analyze the model with periodic boundary conditions, where we study how the model can end up in a fixed state, i.e., freezes. Then we implement the model on the European geography with mountains and rivers. We see how the model reproduces some qualitative features of European culture formation, namely, that rivers and mountains are more frequently borders between cultures, mountainous regions tend to have higher cultural diversity, and the central European plain has less clear cultural borders."}],"issue":"5","_id":"12890","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Stochastic cellular automaton model of culture formation","intvolume":" 108","oa_version":"Preprint","scopus_import":"1","day":"08","article_processing_charge":"No","publication":"Physical Review E","citation":{"chicago":"Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Stochastic Cellular Automaton Model of Culture Formation.” Physical Review E. American Physical Society, 2023. https://doi.org/10.1103/PhysRevE.108.054307.","mla":"Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Stochastic Cellular Automaton Model of Culture Formation.” Physical Review E, vol. 108, no. 5, 054307, American Physical Society, 2023, doi:10.1103/PhysRevE.108.054307.","short":"F.R. Klausen, A.B. Lauritsen, Physical Review E 108 (2023).","ista":"Klausen FR, Lauritsen AB. 2023. Stochastic cellular automaton model of culture formation. Physical Review E. 108(5), 054307.","ieee":"F. R. Klausen and A. B. Lauritsen, “Stochastic cellular automaton model of culture formation,” Physical Review E, vol. 108, no. 5. American Physical Society, 2023.","apa":"Klausen, F. R., & Lauritsen, A. B. (2023). Stochastic cellular automaton model of culture formation. Physical Review E. American Physical Society. https://doi.org/10.1103/PhysRevE.108.054307","ama":"Klausen FR, Lauritsen AB. Stochastic cellular automaton model of culture formation. Physical Review E. 2023;108(5). doi:10.1103/PhysRevE.108.054307"},"article_type":"original","date_published":"2023-11-08T00:00:00Z"}]