[{"type":"journal_article","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","scopus_import":"1","volume":53,"quality_controlled":"1","date_updated":"2025-09-08T14:50:31Z","date_created":"2024-11-24T23:01:49Z","_id":"18587","oa_version":"Published Version","month":"12","doi":"10.1038/s41684-024-01476-2","department":[{"_id":"PreCl"}],"license":"https://creativecommons.org/licenses/by/4.0/","file_date_updated":"2024-12-03T14:07:04Z","publisher":"Springer Nature","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"        53","date_published":"2024-12-01T00:00:00Z","citation":{"ama":"Lauwereyns J, Bajramovic J, Bert B, et al. Toward a common interpretation of the 3Rs principles in animal research. <i>Lab Animal</i>. 2024;53:347-350. doi:<a href=\"https://doi.org/10.1038/s41684-024-01476-2\">10.1038/s41684-024-01476-2</a>","apa":"Lauwereyns, J., Bajramovic, J., Bert, B., Camenzind, S., De Kock, J., Elezović, A., … Ahluwalia, A. (2024). Toward a common interpretation of the 3Rs principles in animal research. <i>Lab Animal</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41684-024-01476-2\">https://doi.org/10.1038/s41684-024-01476-2</a>","ieee":"J. Lauwereyns <i>et al.</i>, “Toward a common interpretation of the 3Rs principles in animal research,” <i>Lab Animal</i>, vol. 53. Springer Nature, pp. 347–350, 2024.","ista":"Lauwereyns J, Bajramovic J, Bert B, Camenzind S, De Kock J, Elezović A, Erden S, Gonzalez-Uarquin F, Ulman YI, Hoffmann OI, Kitsara M, Kostomitsopoulos N, Neuhaus W, Petit-Demouliere B, Pollo S, Riso B, Schober S, Sotiropoulos A, Thomas A, Vitale A, Wilflingseder D, Ahluwalia A. 2024. Toward a common interpretation of the 3Rs principles in animal research. Lab Animal. 53, 347–350.","mla":"Lauwereyns, Jan, et al. “Toward a Common Interpretation of the 3Rs Principles in Animal Research.” <i>Lab Animal</i>, vol. 53, Springer Nature, 2024, pp. 347–50, doi:<a href=\"https://doi.org/10.1038/s41684-024-01476-2\">10.1038/s41684-024-01476-2</a>.","chicago":"Lauwereyns, Jan, Jeffrey Bajramovic, Bettina Bert, Samuel Camenzind, Joery De Kock, Alisa Elezović, Sevilay Erden, et al. “Toward a Common Interpretation of the 3Rs Principles in Animal Research.” <i>Lab Animal</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41684-024-01476-2\">https://doi.org/10.1038/s41684-024-01476-2</a>.","short":"J. Lauwereyns, J. Bajramovic, B. Bert, S. Camenzind, J. De Kock, A. Elezović, S. Erden, F. Gonzalez-Uarquin, Y.I. Ulman, O.I. Hoffmann, M. Kitsara, N. Kostomitsopoulos, W. Neuhaus, B. Petit-Demouliere, S. Pollo, B. Riso, S. Schober, A. Sotiropoulos, A. Thomas, A. Vitale, D. Wilflingseder, A. Ahluwalia, Lab Animal 53 (2024) 347–350."},"status":"public","article_processing_charge":"No","OA_type":"hybrid","OA_place":"publisher","oa":1,"day":"01","ddc":["570"],"author":[{"last_name":"Lauwereyns","first_name":"Jan","full_name":"Lauwereyns, Jan"},{"full_name":"Bajramovic, Jeffrey","first_name":"Jeffrey","last_name":"Bajramovic"},{"first_name":"Bettina","full_name":"Bert, Bettina","last_name":"Bert"},{"last_name":"Camenzind","first_name":"Samuel","full_name":"Camenzind, Samuel"},{"last_name":"De Kock","full_name":"De Kock, Joery","first_name":"Joery"},{"last_name":"Elezović","full_name":"Elezović, Alisa","first_name":"Alisa"},{"full_name":"Erden, Sevilay","first_name":"Sevilay","last_name":"Erden"},{"full_name":"Gonzalez-Uarquin, Fernando","first_name":"Fernando","last_name":"Gonzalez-Uarquin"},{"last_name":"Ulman","full_name":"Ulman, Yesim Isil","first_name":"Yesim Isil"},{"first_name":"Orsolya Ivett","full_name":"Hoffmann, Orsolya Ivett","last_name":"Hoffmann"},{"last_name":"Kitsara","first_name":"Maria","full_name":"Kitsara, Maria"},{"first_name":"Nikolaos","full_name":"Kostomitsopoulos, Nikolaos","last_name":"Kostomitsopoulos"},{"full_name":"Neuhaus, Winfried","first_name":"Winfried","last_name":"Neuhaus"},{"last_name":"Petit-Demouliere","full_name":"Petit-Demouliere, Benoit","first_name":"Benoit"},{"last_name":"Pollo","first_name":"Simone","full_name":"Pollo, Simone"},{"full_name":"Riso, Brígida","first_name":"Brígida","last_name":"Riso"},{"id":"80b0a0ef-4b9f-11ec-b119-8d9d94c4a1d8","last_name":"Schober","first_name":"Sophie","full_name":"Schober, Sophie"},{"last_name":"Sotiropoulos","full_name":"Sotiropoulos, Athanassia","first_name":"Athanassia"},{"first_name":"Aurélie","full_name":"Thomas, Aurélie","last_name":"Thomas"},{"last_name":"Vitale","full_name":"Vitale, Augusto","first_name":"Augusto"},{"last_name":"Wilflingseder","full_name":"Wilflingseder, Doris","first_name":"Doris"},{"last_name":"Ahluwalia","full_name":"Ahluwalia, Arti","first_name":"Arti"}],"title":"Toward a common interpretation of the 3Rs principles in animal research","abstract":[{"text":"Many scientific breakthroughs have depended on animal research, yet the ethical concerns surrounding the use of animals in experimentation have long prompted discussions about humane treatment and responsible scientific practice. First articulated by Russell and Burch, the 3Rs Principles of Replacement, Reduction, and Refinement have gained widespread recognition as basic guidelines for animal research. Over time, the 3Rs have transcended the research community, influencing policy decisions, animal welfare advocacy and public perception of animal experimentation. Despite their broad acceptance, interpretations of the 3Rs vary substantially, shaping statutory frameworks at various levels, with both technical and practical impacts.","lang":"eng"}],"acknowledgement":"This publication is based upon work from the Ethics Crossover Group within the COST Action IMPROVE (“3Rs concepts to improve the quality of biomedical science”), CA21139, supported by COST (European Cooperation in Science and Technology). We acknowledge the input and advice from Dr. Susanna Louhimies.","page":"347-350","publication_status":"published","publication":"Lab Animal","isi":1,"file":[{"checksum":"67fc140f761581a291591f075e49b88d","relation":"main_file","file_id":"18614","file_name":"2024_LabAnimal_Lauwereyns.pdf","access_level":"open_access","content_type":"application/pdf","file_size":967252,"date_created":"2024-12-03T14:07:04Z","date_updated":"2024-12-03T14:07:04Z","creator":"dernst","success":1}],"publication_identifier":{"issn":["0093-7355"],"eissn":["1548-4475"]},"language":[{"iso":"eng"}],"external_id":{"isi":["001355264100001"],"pmid":["39548348"]},"pmid":1,"article_type":"letter_note","year":"2024"},{"year":"2024","language":[{"iso":"eng"}],"file":[{"file_id":"18597","relation":"main_file","file_name":"Cecelia Mweka Master Thesis.pdf","checksum":"054ed7a5e5ae6e7220e6bb37ea57a3c3","date_updated":"2024-11-28T12:50:32Z","date_created":"2024-11-28T12:50:32Z","file_size":3836671,"creator":"cmweka","success":1,"content_type":"application/pdf","access_level":"open_access"},{"content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","access_level":"closed","file_size":7068210,"date_created":"2024-11-28T12:51:43Z","date_updated":"2024-12-13T11:30:53Z","creator":"cmweka","checksum":"7d7d9299f090d83e628d65d93116e8c2","file_id":"18598","relation":"source_file","file_name":"Cecelia Mweka Master Thesis.docx"}],"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}],"publication_identifier":{"issn":["2791-4585"]},"acknowledgement":"I would like to acknowledge Scott Waitukaitis and Jérémie Palacci, for their supervision, and their extensive support of my learning. \r\n\r\nFor the beautiful characterization images used in this work, I would like to thank Dr. Daniel Grober, Samuel Hajek and Felix Pertl.\r\n\r\nThe Palacci group, particularly Malina Strugaru and Dan Grober, for their continuous guidance in decoding and following my streams of thought.\r\n\r\nTo the Waitukaitis group, for helping me find my footing in science, and making me feel at\r\nhome.\r\n\r\nTo the Nanofabrication Facility (NFF) at ISTA, for training me in significant aspects of my research. The MIBA Facility, and particularly Todor Asenov for consistently picking up the phone for my machining and designing needs.\r\n\r\nTo my friends, Mariana, Lenka, Aaron, Rebecca, Eavan who provided an ear, wine, and a lot more when I needed to vent, talk through my crises as well as experiment. For the walks, for the coffees, for reading through my work and providing edits, for dinners to take me out of blocks and binds and for cheering me on when it felt insurmountable. \r\n\r\nFinally, I am grateful to Griff and Fletcher, whose music helped me through several blocks, especially with my writing.\r\n\r\nMy science would not have been possible without the guidance, support and contributions of\r\nall these people, and more.","publication_status":"published","page":"61","title":"Non equilibrium dynamics of driven individual particles and 3D printing across scales","abstract":[{"text":"This thesis is an experimental work about two distinct research projects that evolved from a single project: non-equilibrium dynamics of an acoustically vibrated particle and microfabrication of particles with nano-scale 3D printing. The first project explores non equilibrium dynamics of a particle driven by ultrasonic vibrations. We design an experimental system consisting of an electromechanical vibration scheme to drive the particle’s vibrations and an imaging scheme to track its trajectories. We study the trajectories to determine how the particle’s dynamics evolve under the driven conditions, considering out of equilibrium systems in the context of equilibrium statistical mechanics. Using a Langevin framework and the Boltzmann factor, we characterize the particle’s dynamics as complex; the particle motion\r\nis not purely diffusive. We extract physical parameters like spring constant, effective temperature, damping coefficient and resonance frequency.\r\n\r\nIn the second project, we explore and develop techniques in the design and microfabrication of particles across scales. Microfabrication involves building structures at the micron or submicron scale. These designed miniaturized patterns, objects, or devices are useful in biophysics, pharmacology, medical biology, and nanotechnology. We specifically apply two-photon polymerization, a form of 3D nano printing. We print millimetric particles, characterizing different designs to evaluate and showcase the resolution, aspect ratio integrity and print quality of the printing process. We also design and fabricate a microsensor to deflect under applicable force of order 0.1 pN. We present fundamental concepts needed to design the microsensor, showcasing 3D printing at considerably smaller scales down to the µm or below.","lang":"eng"}],"author":[{"full_name":"Mweka, Cecelia N","first_name":"Cecelia N","last_name":"Mweka","id":"2a69ab4b-896a-11ed-bdf8-cb8641cf2b21"}],"ddc":["530"],"day":"29","supervisor":[{"orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","full_name":"Waitukaitis, Scott R","first_name":"Scott R"},{"last_name":"Palacci","id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","orcid":"0000-0002-7253-9465","full_name":"Palacci, Jérémie A","first_name":"Jérémie A"}],"article_processing_charge":"No","degree_awarded":"MS","OA_place":"publisher","oa":1,"alternative_title":["ISTA Master's Thesis"],"status":"public","corr_author":"1","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_published":"2024-11-29T00:00:00Z","citation":{"ama":"Mweka CN. Non equilibrium dynamics of driven individual particles and 3D printing across scales. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:18588\">10.15479/at:ista:18588</a>","apa":"Mweka, C. N. (2024). <i>Non equilibrium dynamics of driven individual particles and 3D printing across scales</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:18588\">https://doi.org/10.15479/at:ista:18588</a>","ieee":"C. N. Mweka, “Non equilibrium dynamics of driven individual particles and 3D printing across scales,” Institute of Science and Technology Austria, 2024.","ista":"Mweka CN. 2024. Non equilibrium dynamics of driven individual particles and 3D printing across scales. Institute of Science and Technology Austria.","mla":"Mweka, Cecelia N. <i>Non Equilibrium Dynamics of Driven Individual Particles and 3D Printing across Scales</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:18588\">10.15479/at:ista:18588</a>.","short":"C.N. Mweka, Non Equilibrium Dynamics of Driven Individual Particles and 3D Printing across Scales, Institute of Science and Technology Austria, 2024.","chicago":"Mweka, Cecelia N. “Non Equilibrium Dynamics of Driven Individual Particles and 3D Printing across Scales.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:18588\">https://doi.org/10.15479/at:ista:18588</a>."},"publisher":"Institute of Science and Technology Austria","file_date_updated":"2024-12-13T11:30:53Z","department":[{"_id":"GradSch"}],"doi":"10.15479/at:ista:18588","month":"11","_id":"18588","oa_version":"Published Version","date_created":"2024-11-27T09:12:02Z","date_updated":"2026-04-07T12:42:13Z","type":"dissertation","has_accepted_license":"1"},{"publication":"Molecular Plant","file":[{"checksum":"a11feea4b1677df76b632eca04bfc1dd","file_name":"2024_MolecularPlant_Kralova.pdf","file_id":"18612","relation":"main_file","content_type":"application/pdf","access_level":"open_access","success":1,"creator":"dernst","date_created":"2024-12-03T11:08:09Z","file_size":3308945,"date_updated":"2024-12-03T11:08:09Z"}],"isi":1,"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"publication_identifier":{"issn":["1674-2052"]},"pmid":1,"external_id":{"isi":["001373778300001"],"pmid":["39501563"]},"language":[{"iso":"eng"}],"year":"2024","article_type":"original","OA_type":"hybrid","article_processing_charge":"Yes (in subscription journal)","OA_place":"publisher","oa":1,"author":[{"last_name":"Králová","full_name":"Králová, Michaela","first_name":"Michaela"},{"last_name":"Kubalová","first_name":"Ivona","full_name":"Kubalová, Ivona"},{"first_name":"Jakub","full_name":"Hajný, Jakub","last_name":"Hajný"},{"orcid":"0000-0001-5630-9419","id":"946011F4-3E71-11EA-860B-C7A73DDC885E","last_name":"Kubiasova","first_name":"Karolina","full_name":"Kubiasova, Karolina"},{"last_name":"Vagaská","first_name":"Karolína","full_name":"Vagaská, Karolína"},{"full_name":"Ge, Zengxiang","first_name":"Zengxiang","orcid":"0000-0001-9381-3577","id":"f43371a3-09ff-11eb-8013-bd0c6a2f6de8","last_name":"Ge"},{"last_name":"Gallei","id":"35A03822-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1286-7368","full_name":"Gallei, Michelle C","first_name":"Michelle C"},{"first_name":"Hana","full_name":"Semerádová, Hana","last_name":"Semerádová","id":"42FE702E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Kuchařová","first_name":"Anna","full_name":"Kuchařová, Anna"},{"last_name":"Hönig","full_name":"Hönig, Martin","first_name":"Martin"},{"last_name":"Monzer","id":"2DB5D88C-D7B3-11E9-B8FD-7907E6697425","full_name":"Monzer, Aline","first_name":"Aline"},{"first_name":"Martin","full_name":"Kovačik, Martin","last_name":"Kovačik"},{"orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","full_name":"Friml, Jiří"},{"first_name":"Ondřej","full_name":"Novák, Ondřej","last_name":"Novák"},{"first_name":"Eva","full_name":"Benková, Eva","orcid":"0000-0002-8510-9739","last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Ikeda","first_name":"Yoshihisa","full_name":"Ikeda, Yoshihisa"},{"full_name":"Zalabák, David","first_name":"David","last_name":"Zalabák"}],"ddc":["580"],"day":"02","issue":"12","title":"A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis","abstract":[{"text":"Hormone perception and signaling pathways have a fundamental regulatory function in the physiological processes of plants. Cytokinins, a class of plant hormones, regulate cell division and meristem maintenance. The cytokinin signaling pathway is well established in the model plant Arabidopsis thaliana. Several negative feedback mechanisms, tightly controlling cytokinin signaling output, have been described previously. In this study, we identified a new feedback mechanism executed through alternative splicing of the cytokinin receptor AHK4/CRE1. A novel splicing variant named CRE1int7 results from seventh intron retention, introducing a premature termination codon in the transcript. We showed that CRE1int7 is translated in planta into a truncated receptor lacking the C-terminal receiver domain essential for signal transduction. CRE1int7 can bind cytokinin but cannot activate the downstream cascade. We present a novel negative feedback mechanism of the cytokinin signaling pathway, facilitated by a decoy receptor that can inactivate canonical cytokinin receptors via dimerization and compete with them for ligand binding. Ensuring proper plant growth and development requires precise control of the cytokinin signaling pathway at several levels. CRE1int7 represents a so-far unknown mechanism for fine-tuning the cytokinin signaling pathway in Arabidopsis.","lang":"eng"}],"acknowledgement":"We dedicate this paper to the deceased Petr Galuszka for his inspiration and support of our project. We thank Prof. Peter Hedden for constructive criticism of the manuscript and English editing. No conflict of interest is declared.","publication_status":"published","page":"1850-1865","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","file_date_updated":"2024-12-03T11:08:09Z","department":[{"_id":"JiFr"},{"_id":"EvBe"}],"publisher":"Elsevier","intvolume":"        17","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2024-12-02T00:00:00Z","citation":{"short":"M. Králová, I. Kubalová, J. Hajný, K. Kubiasova, K. Vagaská, Z. Ge, M.C. Gallei, H. Semerádová, A. Kuchařová, M. Hönig, A. Monzer, M. Kovačik, J. Friml, O. Novák, E. Benková, Y. Ikeda, D. Zalabák, Molecular Plant 17 (2024) 1850–1865.","chicago":"Králová, Michaela, Ivona Kubalová, Jakub Hajný, Karolina Kubiasova, Karolína Vagaská, Zengxiang Ge, Michelle C Gallei, et al. “A Decoy Receptor Derived from Alternative Splicing Fine-Tunes Cytokinin Signaling in Arabidopsis.” <i>Molecular Plant</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.molp.2024.11.001\">https://doi.org/10.1016/j.molp.2024.11.001</a>.","mla":"Králová, Michaela, et al. “A Decoy Receptor Derived from Alternative Splicing Fine-Tunes Cytokinin Signaling in Arabidopsis.” <i>Molecular Plant</i>, vol. 17, no. 12, Elsevier, 2024, pp. 1850–65, doi:<a href=\"https://doi.org/10.1016/j.molp.2024.11.001\">10.1016/j.molp.2024.11.001</a>.","ista":"Králová M, Kubalová I, Hajný J, Kubiasova K, Vagaská K, Ge Z, Gallei MC, Semerádová H, Kuchařová A, Hönig M, Monzer A, Kovačik M, Friml J, Novák O, Benková E, Ikeda Y, Zalabák D. 2024. A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis. Molecular Plant. 17(12), 1850–1865.","ieee":"M. Králová <i>et al.</i>, “A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis,” <i>Molecular Plant</i>, vol. 17, no. 12. Elsevier, pp. 1850–1865, 2024.","apa":"Králová, M., Kubalová, I., Hajný, J., Kubiasova, K., Vagaská, K., Ge, Z., … Zalabák, D. (2024). A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis. <i>Molecular Plant</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.molp.2024.11.001\">https://doi.org/10.1016/j.molp.2024.11.001</a>","ama":"Králová M, Kubalová I, Hajný J, et al. A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis. <i>Molecular Plant</i>. 2024;17(12):1850-1865. doi:<a href=\"https://doi.org/10.1016/j.molp.2024.11.001\">10.1016/j.molp.2024.11.001</a>"},"status":"public","type":"journal_article","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"scopus_import":"1","_id":"18596","month":"12","oa_version":"Published Version","date_updated":"2025-09-08T14:46:45Z","volume":17,"quality_controlled":"1","date_created":"2024-11-28T11:13:35Z","doi":"10.1016/j.molp.2024.11.001"},{"alternative_title":["LNCS"],"status":"public","corr_author":"1","ec_funded":1,"intvolume":"     15234","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2024-11-13T00:00:00Z","citation":{"ama":"Chalupa M, Henzinger TA, Oliveira da Costa A. Monitoring extended hypernode logic. In: <i>Integrated Formal Methods</i>. Vol 15234. Springer Nature; 2024:151-171. doi:<a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">10.1007/978-3-031-76554-4_9</a>","apa":"Chalupa, M., Henzinger, T. A., &#38; Oliveira da Costa, A. (2024). Monitoring extended hypernode logic. In <i>Integrated Formal Methods</i> (Vol. 15234, pp. 151–171). Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">https://doi.org/10.1007/978-3-031-76554-4_9</a>","ieee":"M. Chalupa, T. A. Henzinger, and A. Oliveira da Costa, “Monitoring extended hypernode logic,” in <i>Integrated Formal Methods</i>, 2024, vol. 15234, pp. 151–171.","ista":"Chalupa M, Henzinger TA, Oliveira da Costa A. 2024. Monitoring extended hypernode logic. Integrated Formal Methods. , LNCS, vol. 15234, 151–171.","mla":"Chalupa, Marek, et al. “Monitoring Extended Hypernode Logic.” <i>Integrated Formal Methods</i>, vol. 15234, Springer Nature, 2024, pp. 151–71, doi:<a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">10.1007/978-3-031-76554-4_9</a>.","chicago":"Chalupa, Marek, Thomas A Henzinger, and Ana Oliveira da Costa. “Monitoring Extended Hypernode Logic.” In <i>Integrated Formal Methods</i>, 15234:151–71. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-76554-4_9\">https://doi.org/10.1007/978-3-031-76554-4_9</a>.","short":"M. Chalupa, T.A. Henzinger, A. Oliveira da Costa, in:, Integrated Formal Methods, Springer Nature, 2024, pp. 151–171."},"publisher":"Springer Nature","department":[{"_id":"ToHe"}],"doi":"10.1007/978-3-031-76554-4_9","scopus_import":"1","project":[{"grant_number":"101020093","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"},{"name":"Interface Theory for Security and Privacy","_id":"34a1b658-11ca-11ed-8bc3-c75229f0241e","grant_number":"F8502"}],"_id":"18599","oa_version":"None","month":"11","date_created":"2024-12-01T23:01:52Z","date_updated":"2025-09-08T14:47:22Z","volume":15234,"quality_controlled":"1","type":"conference","year":"2024","external_id":{"isi":["001416640500009"]},"language":[{"iso":"eng"}],"isi":1,"publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031765537"],"issn":["0302-9743"]},"publication":"Integrated Formal Methods","acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093, and by the Austrian Science Fund (FWF) SFB project SpyCoDe F8502.","publication_status":"published","page":"151-171","title":"Monitoring extended hypernode logic","abstract":[{"lang":"eng","text":"Hypernode logic can reason about the prefix relation on stutter-reduced finite traces through the stutter-reduced prefix predicate. We increase the expressiveness of hypernode logic in two ways. First, we split the stutter-reduced prefix predicate into an explicit stutter-reduction operator and the classical prefix predicate on words. This change gives hypernode logic the ability to combine synchronous and asynchronous reasoning by explicitly stating which parts of traces can stutter. Second, we allow the use of regular expressions in formulas to reason about the structure of traces. This change enables hypernode logic to describe a mixture of trace properties and hyperproperties.\r\n\r\nWe show how to translate extended hypernode logic formulas into multi-track automata, which are automata that read multiple input words. Then we describe a fully online monitoring algorithm for monitoring k-safety hyperproperties specified in the logic. We have implemented the monitoring algorithm, and evaluated it on monitoring synchronous and asynchronous versions of observational determinism, and on checking the privacy preservation by compiler optimizations."}],"author":[{"id":"87e34708-d6c6-11ec-9f5b-9391e7be2463","last_name":"Chalupa","first_name":"Marek","full_name":"Chalupa, Marek"},{"orcid":"0000-0002-2985-7724","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","first_name":"Thomas A"},{"full_name":"Oliveira da Costa, Ana","first_name":"Ana","last_name":"Oliveira da Costa","id":"f347ec37-6676-11ee-b395-a888cb7b4fb4","orcid":"0000-0002-8741-5799"}],"day":"13","OA_type":"closed access","article_processing_charge":"No"},{"type":"conference","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2405.13583"}],"doi":"10.1007/978-3-031-67695-6_4","_id":"18600","oa_version":"Preprint","month":"11","volume":14550,"date_updated":"2025-09-08T14:45:11Z","date_created":"2024-12-01T23:01:53Z","quality_controlled":"1","scopus_import":"1","publisher":"Springer Nature","department":[{"_id":"KrCh"}],"status":"public","arxiv":1,"alternative_title":["LNCS"],"date_published":"2024-11-01T00:00:00Z","citation":{"ama":"Andriushchenko R, Bork A, Budde CE, et al. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. In: <i>TOOLympics Challenge 2023</i>. Vol 14550. Springer Nature; 2024:90-146. doi:<a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">10.1007/978-3-031-67695-6_4</a>","apa":"Andriushchenko, R., Bork, A., Budde, C. E., Češka, M., Grover, K., Hahn, E. M., … Zhang, Z. (2024). Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. In <i>TOOLympics Challenge 2023</i> (Vol. 14550, pp. 90–146). Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">https://doi.org/10.1007/978-3-031-67695-6_4</a>","ieee":"R. Andriushchenko <i>et al.</i>, “Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report,” in <i>TOOLympics Challenge 2023</i>, 2024, vol. 14550, pp. 90–146.","ista":"Andriushchenko R, Bork A, Budde CE, Češka M, Grover K, Hahn EM, Hartmanns A, Israelsen B, Jansen N, Jeppson J, Junges S, Köhl MA, Könighofer B, Kretinsky J, Meggendorfer T, Parker D, Pranger S, Quatmann T, Ruijters E, Taylor L, Volk M, Weininger M, Zhang Z. 2024. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. TOOLympics Challenge 2023. , LNCS, vol. 14550, 90–146.","mla":"Andriushchenko, Roman, et al. “Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report.” <i>TOOLympics Challenge 2023</i>, vol. 14550, Springer Nature, 2024, pp. 90–146, doi:<a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">10.1007/978-3-031-67695-6_4</a>.","chicago":"Andriushchenko, Roman, Alexander Bork, Carlos E. Budde, Milan Češka, Kush Grover, Ernst Moritz Hahn, Arnd Hartmanns, et al. “Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report.” In <i>TOOLympics Challenge 2023</i>, 14550:90–146. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-67695-6_4\">https://doi.org/10.1007/978-3-031-67695-6_4</a>.","short":"R. Andriushchenko, A. Bork, C.E. Budde, M. Češka, K. Grover, E.M. Hahn, A. Hartmanns, B. Israelsen, N. Jansen, J. Jeppson, S. Junges, M.A. Köhl, B. Könighofer, J. Kretinsky, T. Meggendorfer, D. Parker, S. Pranger, T. Quatmann, E. Ruijters, L. Taylor, M. Volk, M. Weininger, Z. Zhang, in:, TOOLympics Challenge 2023, Springer Nature, 2024, pp. 90–146."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"     14550","author":[{"last_name":"Andriushchenko","full_name":"Andriushchenko, Roman","first_name":"Roman"},{"last_name":"Bork","full_name":"Bork, Alexander","first_name":"Alexander"},{"first_name":"Carlos E.","full_name":"Budde, Carlos E.","last_name":"Budde"},{"last_name":"Češka","first_name":"Milan","full_name":"Češka, Milan"},{"last_name":"Grover","first_name":"Kush","full_name":"Grover, Kush"},{"last_name":"Hahn","first_name":"Ernst Moritz","full_name":"Hahn, Ernst Moritz"},{"full_name":"Hartmanns, Arnd","first_name":"Arnd","last_name":"Hartmanns"},{"last_name":"Israelsen","full_name":"Israelsen, Bryant","first_name":"Bryant"},{"last_name":"Jansen","full_name":"Jansen, Nils","first_name":"Nils"},{"last_name":"Jeppson","first_name":"Joshua","full_name":"Jeppson, Joshua"},{"last_name":"Junges","full_name":"Junges, Sebastian","first_name":"Sebastian"},{"first_name":"Maximilian A.","full_name":"Köhl, Maximilian A.","last_name":"Köhl"},{"last_name":"Könighofer","full_name":"Könighofer, Bettina","first_name":"Bettina"},{"full_name":"Kretinsky, Jan","first_name":"Jan","last_name":"Kretinsky","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8122-2881"},{"first_name":"Tobias","full_name":"Meggendorfer, Tobias","orcid":"0000-0002-1712-2165","last_name":"Meggendorfer","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1"},{"last_name":"Parker","first_name":"David","full_name":"Parker, David"},{"last_name":"Pranger","first_name":"Stefan","full_name":"Pranger, Stefan"},{"first_name":"Tim","full_name":"Quatmann, Tim","last_name":"Quatmann"},{"last_name":"Ruijters","first_name":"Enno","full_name":"Ruijters, Enno"},{"full_name":"Taylor, Landon","first_name":"Landon","last_name":"Taylor"},{"last_name":"Volk","first_name":"Matthias","full_name":"Volk, Matthias"},{"id":"02ab0197-cc70-11ed-ab61-918e71f56881","last_name":"Weininger","full_name":"Weininger, Maximilian","first_name":"Maximilian"},{"last_name":"Zhang","first_name":"Zhen","full_name":"Zhang, Zhen"}],"day":"01","oa":1,"OA_place":"repository","OA_type":"green","article_processing_charge":"No","publication_status":"published","page":"90-146","acknowledgement":"The authors are ordered alphabetically. This work was supported by DFG RTG 2236/2 (UnRAVeL) and DFG project TRR 248 (CPEC, ID 389792660), by the EU under MSCA grant agreements 101008233 (MISSION), 101034413 (IST-BRIDGE), and 101067199 (ProSVED), by ERC Starting Grant 101077178 (DEUCE), ERC Consolidator Grant 864075 (CAESAR), and ERC Advanced Grant 834115 (FUN2MODEL), by GAČR grant GA23-06963S (VESCAA), by National Science Foundation grant 1856733, by NextGenerationEU project D53D23008400006 (SMARTITUDE), and by NWO VENI grant 639.021.754.","abstract":[{"lang":"eng","text":"The analysis of formal models that include quantitative aspects such as timing or probabilistic choices is performed by quantitative verification tools. Broad and mature tool support is available for computing basic properties such as expected rewards on basic models such as Markov chains. Previous editions of QComp, the comparison of tools for the analysis of quantitative formal models, focused on this setting. Many application scenarios, however, require more advanced property types such as LTL and parameter synthesis queries as well as advanced models like stochastic games and partially observable MDPs. For these, tool support is in its infancy today. This paper presents the outcomes of QComp 2023: a survey of the state of the art in quantitative verification tool support for advanced property types and models. With tools ranging from first research prototypes to well-supported integrations into established toolsets, this report highlights today’s active areas and tomorrow’s challenges in tool-focused research for quantitative verification."}],"title":"Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report","publication_identifier":{"eissn":["1611-3349"],"issn":["0302-9743"],"isbn":["9783031676949"]},"isi":1,"publication":"TOOLympics Challenge 2023","year":"2024","external_id":{"arxiv":["2405.13583"],"isi":["001434957500004"]},"language":[{"iso":"eng"}]},{"_id":"18602","month":"12","oa_version":"Published Version","date_created":"2024-12-01T23:01:53Z","quality_controlled":"1","date_updated":"2025-09-08T14:46:06Z","volume":15,"scopus_import":"1","project":[{"_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E","name":"Towards scalable hut wire quantum devices","call_identifier":"FWF","grant_number":"P32235"},{"name":"High impedance circuit quantum electrodynamics with hole spins","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1","grant_number":"I05060"}],"doi":"10.1038/s41467-024-54520-7","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","type":"journal_article","citation":{"ista":"De Palma F, Oppliger F, Jang W, Bosco S, Janik M, Calcaterra S, Katsaros G, Isella G, Loss D, Scarlino P. 2024. Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states. Nature Communications. 15, 10177.","chicago":"De Palma, Franco, Fabian Oppliger, Wonjin Jang, Stefano Bosco, Marian Janik, Stefano Calcaterra, Georgios Katsaros, Giovanni Isella, Daniel Loss, and Pasquale Scarlino. “Strong Hole-Photon Coupling in Planar Ge for Probing Charge Degree and Strongly Correlated States.” <i>Nature Communications</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41467-024-54520-7\">https://doi.org/10.1038/s41467-024-54520-7</a>.","short":"F. De Palma, F. Oppliger, W. Jang, S. Bosco, M. Janik, S. Calcaterra, G. Katsaros, G. Isella, D. Loss, P. Scarlino, Nature Communications 15 (2024).","mla":"De Palma, Franco, et al. “Strong Hole-Photon Coupling in Planar Ge for Probing Charge Degree and Strongly Correlated States.” <i>Nature Communications</i>, vol. 15, 10177, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1038/s41467-024-54520-7\">10.1038/s41467-024-54520-7</a>.","ama":"De Palma F, Oppliger F, Jang W, et al. Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states. <i>Nature Communications</i>. 2024;15. doi:<a href=\"https://doi.org/10.1038/s41467-024-54520-7\">10.1038/s41467-024-54520-7</a>","ieee":"F. De Palma <i>et al.</i>, “Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states,” <i>Nature Communications</i>, vol. 15. Springer Nature, 2024.","apa":"De Palma, F., Oppliger, F., Jang, W., Bosco, S., Janik, M., Calcaterra, S., … Scarlino, P. (2024). Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-024-54520-7\">https://doi.org/10.1038/s41467-024-54520-7</a>"},"date_published":"2024-12-01T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"        15","DOAJ_listed":"1","status":"public","article_number":"10177","file_date_updated":"2024-12-03T11:00:15Z","department":[{"_id":"GeKa"}],"publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Semiconductor quantum dots (QDs) in planar germanium (Ge) heterostructures have emerged as front-runners for future hole-based quantum processors. Here, we present strong coupling between a hole charge qubit, defined in a double quantum dot (DQD) in planar Ge, and microwave photons in a high-impedance (Zr = 1.3 kΩ) resonator based on an array of superconducting quantum interference devices (SQUIDs). Our investigation reveals vacuum-Rabi splittings with coupling strengths up to g0/2π = 260 MHz, and a cooperativity of C ~ 100, dependent on DQD tuning. Furthermore, utilizing the frequency tunability of our resonator, we explore the quenched energy splitting associated with strong Coulomb correlation effects in Ge QDs. The observed enhanced coherence of the strongly correlated excited state signals the presence of distinct symmetries within related spin functions, serving as a precursor to the strong coupling between photons and spin-charge hybrid qubits in planar Ge. This work paves the way towards coherent quantum connections between remote hole qubits in planar Ge, required to scale up hole-based quantum processors."}],"title":"Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states","publication_status":"published","acknowledgement":"The authors thank Simone Frasca, Vincent Jouanny, Guillaume Beaulieu, Camille Roy, Dominic Dahinden, Davide Lombardo, Daniel Chrastina, and Siddhart Gautam for contributing to some cleanroom fabrication steps, the measurement setup, device simulations, data analysis, and for the useful discussions. P.S. acknowledges support from the Swiss National Science Foundation (SNSF) through the grants Ref. No. 200021 200418 and Ref. No. 206021_205335, and from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number 01042765 SEFRI MB22.00081. W.J. acknowledges support from the EPFL QSE Postdoctoral Fellowship Grant. S.B., D.L., and P.S. acknowledge support from the NCCR Spin Qubit in Silicon (NCCR-SPIN) Grant No. 51NF40-180604. M.J., G.K., G.I., and S.C. acknowledge support from the Horizon Europe Project IGNITE ID 101070193. G.K. acknowledges support from the FWF via the P32235 and I05060 projects.","OA_place":"publisher","oa":1,"OA_type":"gold","article_processing_charge":"Yes","author":[{"full_name":"De Palma, Franco","first_name":"Franco","last_name":"De Palma"},{"first_name":"Fabian","full_name":"Oppliger, Fabian","last_name":"Oppliger"},{"last_name":"Jang","full_name":"Jang, Wonjin","first_name":"Wonjin"},{"first_name":"Stefano","full_name":"Bosco, Stefano","last_name":"Bosco"},{"last_name":"Janik","id":"396A1950-F248-11E8-B48F-1D18A9856A87","orcid":"0009-0003-9037-8831","first_name":"Marian","full_name":"Janik, Marian"},{"last_name":"Calcaterra","full_name":"Calcaterra, Stefano","first_name":"Stefano"},{"full_name":"Katsaros, Georgios","first_name":"Georgios","orcid":"0000-0001-8342-202X","last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Giovanni","full_name":"Isella, Giovanni","last_name":"Isella"},{"first_name":"Daniel","full_name":"Loss, Daniel","last_name":"Loss"},{"last_name":"Scarlino","full_name":"Scarlino, Pasquale","first_name":"Pasquale"}],"day":"01","ddc":["530"],"external_id":{"isi":["001362684200001"],"pmid":["39580488"]},"pmid":1,"language":[{"iso":"eng"}],"year":"2024","article_type":"original","publication":"Nature Communications","publication_identifier":{"eissn":["2041-1723"]},"file":[{"checksum":"ef9f99a84089c388904cc8aa8d89c55a","file_id":"18611","relation":"main_file","file_name":"2024_NatureComm_dePalma.pdf","content_type":"application/pdf","access_level":"open_access","file_size":5288092,"date_updated":"2024-12-03T11:00:15Z","date_created":"2024-12-03T11:00:15Z","creator":"dernst","success":1}],"isi":1},{"title":"Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons","abstract":[{"text":"It is widely believed that information storage in neuronal circuits involves nanoscopic structural changes at synapses, resulting in the formation of synaptic engrams. However, direct evidence for this hypothesis is lacking. To test this conjecture, we combined chemical potentiation, functional analysis by paired pre-postsynaptic recordings, and structural analysis by electron microscopy (EM) and freeze-fracture replica labeling (FRL) at the rodent hippocampal mossy fiber synapse, a key synapse in the trisynaptic circuit of the hippocampus. Biophysical analysis of synaptic transmission revealed that forskolin-induced chemical potentiation increased the readily releasable vesicle pool size and vesicular release probability by 146% and 49%, respectively. Structural analysis of mossy fiber synapses by EM and FRL demonstrated an increase in the number of vesicles close to the plasma membrane and the number of clusters of the priming protein Munc13-1, indicating an increase in the number of both docked and primed vesicles. Furthermore, FRL analysis revealed a significant reduction of the distance between Munc13-1 and CaV2.1 Ca2+ channels, suggesting reconfiguration of the channel-vesicle coupling nanotopography. Our results indicate that presynaptic plasticity is associated with structural reorganization of active zones. We propose that changes in potential nanoscopic organization at synaptic vesicle release sites may be correlates of learning and memory at a plastic central synapse.","lang":"eng"}],"APC_amount":"6248,82 EUR","acknowledgement":"We thank Carolina Borges-Merjane, Jing-Jing Chen, Katharina Lichter, and Samuel Young for critically reading the manuscript; the Electron Microscopy Facility of ISTA, in particular Vanessa Zheden, for extensive support, advice, and experimental assistance; the Preclinical Facility of ISTA, in particular Victoria Wimmer and Michael Schunn, for experimental assistance; Florian Marr and Christina Altmutter for technical support; Alois Schlögl for help with analysis; and Eleftheria Kralli-Beller for manuscript editing. We also thank Cordelia Imig for providing Munc13-1cKO-Munc13-2/3(−/−) mutant mice. Part of the work has been published in O.K.’s thesis in partial fulfillment of the requirements for the degree of Doctor of Philosophy.\r\nThis project received funding from the European Research Council and European Union’s Horizon 2020 research and innovation programme (ERC 692692 to P.J.; https://cordis.europa.eu/project/id/692692/de) and from the Fond zur Förderung der Wissenschaftlichen Forschung (Z312-B27 Wittgenstein award to P.J., https://www.fwf.ac.at/en/funding/portfolio/projects/fwf-wittgenstein-award; W1205-B09 and P36232-B to P.J., https://www.fwf.ac.at/en/funding; I6166-B to R.S.; https://www.fwf.ac.at/en/funding). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","publication_status":"published","article_processing_charge":"Yes","OA_type":"gold","OA_place":"publisher","oa":1,"ddc":["570"],"day":"18","author":[{"first_name":"Olena","full_name":"Kim, Olena","orcid":"0000-0003-2344-1039","id":"3F8ABDDA-F248-11E8-B48F-1D18A9856A87","last_name":"Kim"},{"full_name":"Okamoto, Yuji","first_name":"Yuji","orcid":"0000-0003-0408-6094","id":"3337E116-F248-11E8-B48F-1D18A9856A87","last_name":"Okamoto"},{"full_name":"Kaufmann, Walter","first_name":"Walter","id":"3F99E422-F248-11E8-B48F-1D18A9856A87","last_name":"Kaufmann","orcid":"0000-0001-9735-5315"},{"full_name":"Brose, Nils","first_name":"Nils","last_name":"Brose"},{"first_name":"Ryuichi","full_name":"Shigemoto, Ryuichi","last_name":"Shigemoto","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444"},{"first_name":"Peter M","full_name":"Jonas, Peter M","orcid":"0000-0001-5001-4804","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","last_name":"Jonas"}],"issue":"11","language":[{"iso":"eng"}],"external_id":{"isi":["001358568700003"],"pmid":["39556620"]},"pmid":1,"article_type":"original","year":"2024","publication":"PLoS Biology","isi":1,"acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"PreCl"}],"file":[{"content_type":"application/pdf","access_level":"open_access","creator":"dernst","success":1,"date_updated":"2024-12-03T08:56:53Z","file_size":3057631,"date_created":"2024-12-03T08:56:53Z","checksum":"7de2dcb50deb65dde05c80082bb85a82","file_name":"2024_PloSBio_Kim.pdf","file_id":"18608","relation":"main_file"}],"publication_identifier":{"issn":["1544-9173"],"eissn":["1545-7885"]},"project":[{"grant_number":"692692","call_identifier":"H2020","name":"Biophysics and circuit function of a giant cortical glutamatergic synapse","_id":"25B7EB9E-B435-11E9-9278-68D0E5697425"},{"_id":"25C5A090-B435-11E9-9278-68D0E5697425","name":"Synaptic communication in neuronal microcircuits","call_identifier":"FWF","grant_number":"Z00312"},{"grant_number":"P36232","_id":"bd88be38-d553-11ed-ba76-81d5a70a6ef5","name":"Mechanisms of GABA release in hippocampal circuits"},{"grant_number":"I06166","_id":"b1b85715-d554-11ed-a5ad-84a07fc9f18e","name":"Structural & functional basis of presynaptic plasticity"},{"_id":"25C3DBB6-B435-11E9-9278-68D0E5697425","name":"Zellkommunikation in Gesundheit und Krankheit","call_identifier":"FWF","grant_number":"W01205"},{"call_identifier":"FWF","_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1","name":"FWF Open Access Fund"}],"scopus_import":"1","date_created":"2024-12-01T23:01:54Z","date_updated":"2026-04-16T12:20:34Z","quality_controlled":"1","volume":22,"_id":"18603","month":"11","oa_version":"Published Version","doi":"10.1371/journal.pbio.3002879","type":"journal_article","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","related_material":{"record":[{"status":"public","id":"18296","relation":"research_data"}]},"DOAJ_listed":"1","intvolume":"        22","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","citation":{"ama":"Kim O, Okamoto Y, Kaufmann W, Brose N, Shigemoto R, Jonas PM. Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons. <i>PLoS Biology</i>. 2024;22(11). doi:<a href=\"https://doi.org/10.1371/journal.pbio.3002879\">10.1371/journal.pbio.3002879</a>","ieee":"O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, and P. M. Jonas, “Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons,” <i>PLoS Biology</i>, vol. 22, no. 11. Public Library of Science, 2024.","apa":"Kim, O., Okamoto, Y., Kaufmann, W., Brose, N., Shigemoto, R., &#38; Jonas, P. M. (2024). Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.3002879\">https://doi.org/10.1371/journal.pbio.3002879</a>","ista":"Kim O, Okamoto Y, Kaufmann W, Brose N, Shigemoto R, Jonas PM. 2024. Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons. PLoS Biology. 22(11), e3002879.","short":"O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, P.M. Jonas, PLoS Biology 22 (2024).","chicago":"Kim, Olena, Yuji Okamoto, Walter Kaufmann, Nils Brose, Ryuichi Shigemoto, and Peter M Jonas. “Presynaptic CAMP-PKA-Mediated Potentiation Induces Reconfiguration of Synaptic Vesicle Pools and Channel-Vesicle Coupling at Hippocampal Mossy Fiber Boutons.” <i>PLoS Biology</i>. Public Library of Science, 2024. <a href=\"https://doi.org/10.1371/journal.pbio.3002879\">https://doi.org/10.1371/journal.pbio.3002879</a>.","mla":"Kim, Olena, et al. “Presynaptic CAMP-PKA-Mediated Potentiation Induces Reconfiguration of Synaptic Vesicle Pools and Channel-Vesicle Coupling at Hippocampal Mossy Fiber Boutons.” <i>PLoS Biology</i>, vol. 22, no. 11, e3002879, Public Library of Science, 2024, doi:<a href=\"https://doi.org/10.1371/journal.pbio.3002879\">10.1371/journal.pbio.3002879</a>."},"date_published":"2024-11-18T00:00:00Z","article_number":"e3002879","ec_funded":1,"corr_author":"1","status":"public","department":[{"_id":"PeJo"},{"_id":"EM-Fac"},{"_id":"RySh"}],"file_date_updated":"2024-12-03T08:56:53Z","publisher":"Public Library of Science"},{"acknowledgement":"This work was initiated at the 16th European Research Week on Geometric Graphs in Strobl in 2019. A.W. has been supported by the Austrian Science Fund (FWF): W1230. S.T. has been funded by the Vienna Science and Technology Fund (WWTF) [10.47379/ICT19035] and by the NWO Gravitation project NETWORKS under grant no. 024.002.003. Part of the work was done while A.W. was emplyed at Graz University of Technology. Preliminary versions of this work have been presented at the 38th European Workshop on Computational Geometry (EuroCG\r\n2022) in Perugia [10] and at the 31st International Symposium on Graph Drawing and Network Visualization (GD 2023) in Isola delle Femmine [11].","publication_status":"published","page":"47-82","title":"Removing popular faces in curve arrangements","abstract":[{"lang":"eng","text":"A face in a curve arrangement is called popular if it is bounded by the same curve multiple times. Motivated by the automatic generation of curved nonogram puzzles, we investigate possibilities to eliminate the popular faces in an arrangement by inserting a single additional curve. This turns out to be NP-hard; however, it becomes tractable when the number of popular faces is small: We present a randomized FPT-time algorithm where the parameter is the number of popular faces."}],"author":[{"last_name":"De Nooijer","full_name":"De Nooijer, Phoebe","first_name":"Phoebe"},{"first_name":"Soeren","full_name":"Terziadis, Soeren","last_name":"Terziadis"},{"full_name":"Weinberger, Alexandra","first_name":"Alexandra","last_name":"Weinberger"},{"orcid":"0000-0002-6660-1322","id":"45CFE238-F248-11E8-B48F-1D18A9856A87","last_name":"Masárová","full_name":"Masárová, Zuzana","first_name":"Zuzana"},{"first_name":"Tamara","full_name":"Mchedlidze, Tamara","last_name":"Mchedlidze"},{"last_name":"Löffler","first_name":"Maarten","full_name":"Löffler, Maarten"},{"first_name":"Günter","full_name":"Rote, Günter","last_name":"Rote"}],"day":"03","ddc":["510"],"issue":"2","OA_type":"gold","article_processing_charge":"No","oa":1,"OA_place":"publisher","year":"2024","article_type":"original","external_id":{"arxiv":["2202.12175"]},"language":[{"iso":"eng"}],"file":[{"file_name":"2024_JourGraphAlgorithms_deNooijer.pdf","relation":"main_file","file_id":"18609","checksum":"be611da6f9d790dc980d6fb7283fe889","success":1,"creator":"dernst","date_updated":"2024-12-03T09:45:00Z","date_created":"2024-12-03T09:45:00Z","file_size":1582493,"access_level":"open_access","content_type":"application/pdf"}],"publication_identifier":{"issn":["1526-1719"]},"publication":"Journal of Graph Algorithms and Applications","doi":"10.7155/jgaa.v28i2.2988","scopus_import":"1","_id":"18604","month":"11","oa_version":"Published Version","volume":28,"date_created":"2024-12-01T23:01:54Z","date_updated":"2024-12-03T09:49:18Z","quality_controlled":"1","type":"journal_article","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"arxiv":1,"corr_author":"1","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"        28","DOAJ_listed":"1","date_published":"2024-11-03T00:00:00Z","citation":{"ama":"De Nooijer P, Terziadis S, Weinberger A, et al. Removing popular faces in curve arrangements. <i>Journal of Graph Algorithms and Applications</i>. 2024;28(2):47-82. doi:<a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">10.7155/jgaa.v28i2.2988</a>","ieee":"P. De Nooijer <i>et al.</i>, “Removing popular faces in curve arrangements,” <i>Journal of Graph Algorithms and Applications</i>, vol. 28, no. 2. Brown University, pp. 47–82, 2024.","apa":"De Nooijer, P., Terziadis, S., Weinberger, A., Masárová, Z., Mchedlidze, T., Löffler, M., &#38; Rote, G. (2024). Removing popular faces in curve arrangements. <i>Journal of Graph Algorithms and Applications</i>. Brown University. <a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">https://doi.org/10.7155/jgaa.v28i2.2988</a>","ista":"De Nooijer P, Terziadis S, Weinberger A, Masárová Z, Mchedlidze T, Löffler M, Rote G. 2024. Removing popular faces in curve arrangements. Journal of Graph Algorithms and Applications. 28(2), 47–82.","short":"P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M. Löffler, G. Rote, Journal of Graph Algorithms and Applications 28 (2024) 47–82.","chicago":"De Nooijer, Phoebe, Soeren Terziadis, Alexandra Weinberger, Zuzana Masárová, Tamara Mchedlidze, Maarten Löffler, and Günter Rote. “Removing Popular Faces in Curve Arrangements.” <i>Journal of Graph Algorithms and Applications</i>. Brown University, 2024. <a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">https://doi.org/10.7155/jgaa.v28i2.2988</a>.","mla":"De Nooijer, Phoebe, et al. “Removing Popular Faces in Curve Arrangements.” <i>Journal of Graph Algorithms and Applications</i>, vol. 28, no. 2, Brown University, 2024, pp. 47–82, doi:<a href=\"https://doi.org/10.7155/jgaa.v28i2.2988\">10.7155/jgaa.v28i2.2988</a>."},"publisher":"Brown University","file_date_updated":"2024-12-03T09:45:00Z","department":[{"_id":"UlWa"},{"_id":"HeEd"}]},{"date_published":"2024-11-27T00:00:00Z","citation":{"ista":"Abanin D, Serbyn M. 2024. Quantum scars make their mark in graphene. Nature. 635(8040), 825–826.","chicago":"Abanin, Dmitry, and Maksym Serbyn. “Quantum Scars Make Their Mark in Graphene.” <i>Nature</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/d41586-024-03649-y\">https://doi.org/10.1038/d41586-024-03649-y</a>.","short":"D. Abanin, M. Serbyn, Nature 635 (2024) 825–826.","mla":"Abanin, Dmitry, and Maksym Serbyn. “Quantum Scars Make Their Mark in Graphene.” <i>Nature</i>, vol. 635, no. 8040, Springer Nature, 2024, pp. 825–26, doi:<a href=\"https://doi.org/10.1038/d41586-024-03649-y\">10.1038/d41586-024-03649-y</a>.","ama":"Abanin D, Serbyn M. Quantum scars make their mark in graphene. <i>Nature</i>. 2024;635(8040):825-826. doi:<a href=\"https://doi.org/10.1038/d41586-024-03649-y\">10.1038/d41586-024-03649-y</a>","ieee":"D. Abanin and M. Serbyn, “Quantum scars make their mark in graphene,” <i>Nature</i>, vol. 635, no. 8040. Springer Nature, pp. 825–826, 2024.","apa":"Abanin, D., &#38; Serbyn, M. (2024). Quantum scars make their mark in graphene. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/d41586-024-03649-y\">https://doi.org/10.1038/d41586-024-03649-y</a>"},"intvolume":"       635","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","department":[{"_id":"MaSe"}],"publisher":"Springer Nature","_id":"18616","month":"11","oa_version":"None","volume":635,"quality_controlled":"1","date_created":"2024-12-03T18:08:16Z","date_updated":"2025-09-08T14:57:35Z","scopus_import":"1","doi":"10.1038/d41586-024-03649-y","type":"journal_article","external_id":{"pmid":["39604614"],"isi":["001367935000029"]},"pmid":1,"language":[{"iso":"eng"}],"year":"2024","article_type":"letter_note","publication":"Nature","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"isi":1,"abstract":[{"text":"By patterning an ultrathin layered structure with tiny wells, physicists have created and imaged peculiar states known as quantum scars — revealing behaviour that could be used to boost the performance of electronic devices.","lang":"eng"}],"title":"Quantum scars make their mark in graphene","publication_status":"published","page":"825-826","OA_type":"closed access","article_processing_charge":"No","issue":"8040","author":[{"last_name":"Abanin","full_name":"Abanin, Dmitry","first_name":"Dmitry"},{"first_name":"Maksym","full_name":"Serbyn, Maksym","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn"}],"day":"27"},{"department":[{"_id":"UlWa"}],"file_date_updated":"2024-12-09T13:56:26Z","publisher":"Elsevier","date_published":"2024-08-01T00:00:00Z","citation":{"ista":"Beďatš D. 2024. Separation of variables for scalar-valued polynomials in the non-stable range. Journal of Algebra. 651, 281–304.","short":"D. Beďatš, Journal of Algebra 651 (2024) 281–304.","chicago":"Beďatš, Daniel. “Separation of Variables for Scalar-Valued Polynomials in the Non-Stable Range.” <i>Journal of Algebra</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">https://doi.org/10.1016/j.jalgebra.2024.04.013</a>.","mla":"Beďatš, Daniel. “Separation of Variables for Scalar-Valued Polynomials in the Non-Stable Range.” <i>Journal of Algebra</i>, vol. 651, Elsevier, 2024, pp. 281–304, doi:<a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">10.1016/j.jalgebra.2024.04.013</a>.","ama":"Beďatš D. Separation of variables for scalar-valued polynomials in the non-stable range. <i>Journal of Algebra</i>. 2024;651:281-304. doi:<a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">10.1016/j.jalgebra.2024.04.013</a>","ieee":"D. Beďatš, “Separation of variables for scalar-valued polynomials in the non-stable range,” <i>Journal of Algebra</i>, vol. 651. Elsevier, pp. 281–304, 2024.","apa":"Beďatš, D. (2024). Separation of variables for scalar-valued polynomials in the non-stable range. <i>Journal of Algebra</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jalgebra.2024.04.013\">https://doi.org/10.1016/j.jalgebra.2024.04.013</a>"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"       651","corr_author":"1","status":"public","arxiv":1,"has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"type":"journal_article","date_updated":"2025-09-08T14:57:00Z","volume":651,"date_created":"2024-12-04T07:58:45Z","quality_controlled":"1","_id":"18617","month":"08","oa_version":"Published Version","scopus_import":"1","doi":"10.1016/j.jalgebra.2024.04.013","publication":"Journal of Algebra","publication_identifier":{"issn":["0021-8693"]},"isi":1,"file":[{"access_level":"open_access","content_type":"application/pdf","date_updated":"2024-12-09T13:56:26Z","file_size":486969,"date_created":"2024-12-09T13:56:26Z","success":1,"creator":"dernst","checksum":"7b01c89128ba16d5334dfab389a03878","relation":"main_file","file_id":"18638","file_name":"2024_JourAlgebra_Bedats.pdf"}],"language":[{"iso":"eng"}],"external_id":{"isi":["001232775600001"],"arxiv":["2309.11154"]},"article_type":"original","year":"2024","OA_place":"publisher","oa":1,"article_processing_charge":"Yes (via OA deal)","OA_type":"hybrid","ddc":["510"],"day":"01","author":[{"first_name":"Daniel","full_name":"Beďatš, Daniel","id":"78ea3cc9-31e7-11ee-aa02-a6169bbfe1f1","last_name":"Beďatš","orcid":"0009-0004-1828-0044"}],"abstract":[{"lang":"eng","text":"Any complex-valued polynomial on (Rn)k decomposes into an algebraic combination of O(n)-invariant polynomials and harmonic polynomials. This decomposition, separation of variables, is granted to be unique if n≥2k−1. We prove that the condition n≥2k−1 is not only sufficient, but also necessary for uniqueness of the separation. Moreover, we describe the structure of non-uniqueness of the separation in the boundary cases when n=2k−2 and n=2k−3.\r\nFormally, we study the kernel of a multiplication map ϕ carrying out separation of variables. We devise a general algorithmic procedure for describing Ker ϕ in the restricted non-stable range k≤n<2k−1. In the full non-stable range n<2k−1, we give formulas for highest weights of generators of the kernel as well as formulas for its Hilbert series. Using the developed methods, we obtain a list of highest weight vectors generating Ker ϕ."}],"title":"Separation of variables for scalar-valued polynomials in the non-stable range","page":"281-304","publication_status":"published","acknowledgement":"The author is sincerely grateful for guidance, advice and valuable feedback from Roman Lávička."},{"publication_status":"published","acknowledgement":"F. Q. and C. H. L. acknowledge support from the QEP2.0 Grant from the Singapore National Research Foundation (Grant No. NRF2021-QEP2-02-P09) and the Singapore MOE Tier-II Grant (Grant No. MOE-T2EP50222-0003). J.-Y. D. and Z. P. acknowledge support by the Leverhulme Trust Research Leadership Award RL-2019-015. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. This research was supported in part by Grant No. NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP). We acknowledge the use of IBM Quantum services for this work. The views expressed are those of the authors and do not reflect the official policy or position of IBM or the IBM Quantum team.","abstract":[{"lang":"eng","text":"In contrast with extended Bloch waves, a single particle can become spatially localized due to the so-called skin effect originating from non-Hermitian pumping. Here we show that in kinetically constrained many-body systems, the skin effect can instead manifest as dynamical amplification within the Fock space, beyond the intuitively expected and previously studied particle localization and clustering. We exemplify this non-Hermitian Fock skin effect in an asymmetric version of the PXP model and show that it gives rise to ergodicity-breaking eigenstates—the non-Hermitian analogs of quantum many-body scars. A distinguishing feature of these non-Hermitian scars is their enhanced robustness against external disorders. We propose an experimental realization of the non-Hermitian scar enhancement in a tilted Bose-Hubbard optical lattice with laser-induced loss. Additionally, we implement digital simulations of such scar enhancement on the IBM quantum processor. Our results show that the Fock skin effect provides a powerful tool for creating robust nonergodic states in generic open quantum systems."}],"title":"Enhanced many-body quantum scars from the non-hermitian fock skin effect","issue":"21","author":[{"last_name":"Shen","first_name":"Ruizhe","full_name":"Shen, Ruizhe"},{"first_name":"Fang","full_name":"Qin, Fang","last_name":"Qin"},{"id":"6c292945-a610-11ed-9eec-c3be1ad62a80","last_name":"Desaules","orcid":"0000-0002-3749-6375","first_name":"Jean-Yves Marc","full_name":"Desaules, Jean-Yves Marc"},{"first_name":"Zlatko","full_name":"Papić, Zlatko","last_name":"Papić"},{"last_name":"Lee","full_name":"Lee, Ching Hua","first_name":"Ching Hua"}],"day":"22","OA_place":"repository","oa":1,"OA_type":"green","article_processing_charge":"No","year":"2024","article_type":"original","external_id":{"isi":["001369697800005"],"arxiv":["2403.02395"],"pmid":["39642519"]},"pmid":1,"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"isi":1,"publication":"Physical Review Letters","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2403.02395","open_access":"1"}],"doi":"10.1103/PhysRevLett.133.216601","_id":"18627","month":"11","oa_version":"Preprint","quality_controlled":"1","date_created":"2024-12-08T23:01:55Z","volume":133,"date_updated":"2026-06-10T07:52:52Z","scopus_import":"1","project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413"}],"related_material":{"record":[{"status":"public","relation":"research_data","id":"17471"}]},"type":"journal_article","status":"public","ec_funded":1,"arxiv":1,"article_number":"216601","citation":{"ama":"Shen R, Qin F, Desaules J-YM, Papić Z, Lee CH. Enhanced many-body quantum scars from the non-hermitian fock skin effect. <i>Physical Review Letters</i>. 2024;133(21). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">10.1103/PhysRevLett.133.216601</a>","ieee":"R. Shen, F. Qin, J.-Y. M. Desaules, Z. Papić, and C. H. Lee, “Enhanced many-body quantum scars from the non-hermitian fock skin effect,” <i>Physical Review Letters</i>, vol. 133, no. 21. American Physical Society, 2024.","apa":"Shen, R., Qin, F., Desaules, J.-Y. M., Papić, Z., &#38; Lee, C. H. (2024). Enhanced many-body quantum scars from the non-hermitian fock skin effect. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">https://doi.org/10.1103/PhysRevLett.133.216601</a>","ista":"Shen R, Qin F, Desaules J-YM, Papić Z, Lee CH. 2024. Enhanced many-body quantum scars from the non-hermitian fock skin effect. Physical Review Letters. 133(21), 216601.","chicago":"Shen, Ruizhe, Fang Qin, Jean-Yves Marc Desaules, Zlatko Papić, and Ching Hua Lee. “Enhanced Many-Body Quantum Scars from the Non-Hermitian Fock Skin Effect.” <i>Physical Review Letters</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">https://doi.org/10.1103/PhysRevLett.133.216601</a>.","short":"R. Shen, F. Qin, J.-Y.M. Desaules, Z. Papić, C.H. Lee, Physical Review Letters 133 (2024).","mla":"Shen, Ruizhe, et al. “Enhanced Many-Body Quantum Scars from the Non-Hermitian Fock Skin Effect.” <i>Physical Review Letters</i>, vol. 133, no. 21, 216601, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.133.216601\">10.1103/PhysRevLett.133.216601</a>."},"date_published":"2024-11-22T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"       133","publisher":"American Physical Society","department":[{"_id":"MaSe"}]},{"publication":"Hydrology","publication_identifier":{"eissn":["2306-5338"]},"file":[{"file_id":"18635","relation":"main_file","file_name":"2024_Hydrology_deAndres.pdf","checksum":"0665c5bfca97782bf0b041f23dd7e8d7","file_size":5709093,"date_updated":"2024-12-09T09:43:33Z","date_created":"2024-12-09T09:43:33Z","creator":"dernst","success":1,"content_type":"application/pdf","access_level":"open_access"}],"language":[{"iso":"eng"}],"year":"2024","article_type":"original","OA_place":"publisher","oa":1,"OA_type":"gold","article_processing_charge":"Yes","issue":"11","author":[{"last_name":"De Andrés","first_name":"Eva","full_name":"De Andrés, Eva"},{"last_name":"Muñoz Hermosilla","id":"e1037a6d-646e-11ef-b402-e0ed9ab0901e","full_name":"Muñoz Hermosilla, José M","first_name":"José M"},{"first_name":"Kaian","full_name":"Shahateet, Kaian","last_name":"Shahateet"},{"full_name":"Otero, Jaime","first_name":"Jaime","last_name":"Otero"}],"day":"12","ddc":["550"],"abstract":[{"lang":"eng","text":"Arctic tidewater glaciers are retreating, serving as key indicators of global warming. This study aims to assess how subglacial hydrology affects glacier front retreat by comparing two glacier–fjord models of the Hansbreen glacier: one incorporating a detailed subglacial hydrology model and another simplifying the subglacial discharge to a single channel centered in the flow line. We first validate the subglacial hydrology model by comparing its discharge channels with observations of plume activity. Simulations conducted from April to December 2010 revealed that the glacier front position aligns more closely with the observations in the coupled model than in the simplified version. Furthermore, the mass loss due to calving and submarine melting is greater in the coupled model, with the calving mass loss reaching 6 Mt by the end of the simulation compared to 4 Mt in the simplified model. These findings highlight the critical role of subglacial hydrology in predicting glacier dynamics and emphasize the importance of detailed modeling in understanding the responses of Arctic tidewater glaciers to climate change."}],"title":"The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard","publication_status":"published","acknowledgement":"E. De Andrés is supported by Margarita-Salas Grant No. UP2021-035 under the Next Generation-EU program. This research was also funded by grant PID2020-113051RB-C31 from MCIN/AEI/10.13039/501100011033/FEDER, UE.\r\nWe gratefully acknowledge Michal Cieply and Dariusz Ignatiuk from the Faculty of Natural Sciences, University of Silesia in Katowice, Poland, for their essential contributions to the Hansbreen data collection. We also extend our sincere thanks to Waldemar Walczowski from the Institute of Oceanology, Polish Academy of Sciences, Sopot, Poland, for providing Hansbuka data. Additionally, we would like to thank two anonymous reviewers for their constructive feedback, which helped to enhance the quality and clarity of this work.","file_date_updated":"2024-12-09T09:43:33Z","department":[{"_id":"FrPe"}],"publisher":"MDPI","citation":{"mla":"De Andrés, Eva, et al. “The Importance of Solving Subglaciar Hydrology in Modeling Glacier Retreat: A Case Study of Hansbreen, Svalbard.” <i>Hydrology</i>, vol. 11, no. 11, 193, MDPI, 2024, doi:<a href=\"https://doi.org/10.3390/hydrology11110193\">10.3390/hydrology11110193</a>.","chicago":"De Andrés, Eva, José M Muñoz Hermosilla, Kaian Shahateet, and Jaime Otero. “The Importance of Solving Subglaciar Hydrology in Modeling Glacier Retreat: A Case Study of Hansbreen, Svalbard.” <i>Hydrology</i>. MDPI, 2024. <a href=\"https://doi.org/10.3390/hydrology11110193\">https://doi.org/10.3390/hydrology11110193</a>.","short":"E. De Andrés, J.M. Muñoz Hermosilla, K. Shahateet, J. Otero, Hydrology 11 (2024).","ista":"De Andrés E, Muñoz Hermosilla JM, Shahateet K, Otero J. 2024. The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard. Hydrology. 11(11), 193.","apa":"De Andrés, E., Muñoz Hermosilla, J. M., Shahateet, K., &#38; Otero, J. (2024). The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard. <i>Hydrology</i>. MDPI. <a href=\"https://doi.org/10.3390/hydrology11110193\">https://doi.org/10.3390/hydrology11110193</a>","ieee":"E. De Andrés, J. M. Muñoz Hermosilla, K. Shahateet, and J. Otero, “The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard,” <i>Hydrology</i>, vol. 11, no. 11. MDPI, 2024.","ama":"De Andrés E, Muñoz Hermosilla JM, Shahateet K, Otero J. The importance of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen, Svalbard. <i>Hydrology</i>. 2024;11(11). doi:<a href=\"https://doi.org/10.3390/hydrology11110193\">10.3390/hydrology11110193</a>"},"date_published":"2024-11-12T00:00:00Z","intvolume":"        11","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","DOAJ_listed":"1","corr_author":"1","status":"public","article_number":"193","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"type":"journal_article","related_material":{"record":[{"id":"18634","relation":"used_in_publication","status":"public"}]},"oa_version":"Published Version","_id":"18628","month":"11","volume":11,"quality_controlled":"1","date_created":"2024-12-08T23:01:55Z","date_updated":"2024-12-09T09:43:48Z","scopus_import":"1","doi":"10.3390/hydrology11110193"},{"status":"public","article_number":"053317","arxiv":1,"citation":{"apa":"Shukla, N., Volosniev, A., &#38; Armstrong, J. R. (2024). Anisotropic potential immersed in a dipolar Bose-Einstein condensate. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">https://doi.org/10.1103/PhysRevA.110.053317</a>","ieee":"N. Shukla, A. Volosniev, and J. R. Armstrong, “Anisotropic potential immersed in a dipolar Bose-Einstein condensate,” <i>Physical Review A</i>, vol. 110, no. 5. American Physical Society, 2024.","ama":"Shukla N, Volosniev A, Armstrong JR. Anisotropic potential immersed in a dipolar Bose-Einstein condensate. <i>Physical Review A</i>. 2024;110(5). doi:<a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">10.1103/PhysRevA.110.053317</a>","mla":"Shukla, Neelam, et al. “Anisotropic Potential Immersed in a Dipolar Bose-Einstein Condensate.” <i>Physical Review A</i>, vol. 110, no. 5, 053317, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">10.1103/PhysRevA.110.053317</a>.","short":"N. Shukla, A. Volosniev, J.R. Armstrong, Physical Review A 110 (2024).","chicago":"Shukla, Neelam, Artem Volosniev, and Jeremy R. Armstrong. “Anisotropic Potential Immersed in a Dipolar Bose-Einstein Condensate.” <i>Physical Review A</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevA.110.053317\">https://doi.org/10.1103/PhysRevA.110.053317</a>.","ista":"Shukla N, Volosniev A, Armstrong JR. 2024. Anisotropic potential immersed in a dipolar Bose-Einstein condensate. Physical Review A. 110(5), 053317."},"date_published":"2024-11-18T00:00:00Z","intvolume":"       110","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"American Physical Society","department":[{"_id":"MiLe"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2406.00217"}],"doi":"10.1103/PhysRevA.110.053317","date_updated":"2025-09-08T14:56:22Z","quality_controlled":"1","date_created":"2024-12-08T23:01:55Z","volume":110,"_id":"18629","oa_version":"Preprint","month":"11","scopus_import":"1","type":"journal_article","article_type":"original","year":"2024","language":[{"iso":"eng"}],"external_id":{"arxiv":["2406.00217"],"isi":["001362623400019"]},"publication_identifier":{"eissn":["2469-9934"],"issn":["2469-9926"]},"isi":1,"publication":"Physical Review A","publication_status":"published","acknowledgement":"The authors acknowledge that this material is based upon work supported by the National Science Foundation/EPSCoR RII Track-1: Emergent Quantum Materials and Technologies (EQUATE), Award No. OIA-2044049.","abstract":[{"text":"We study a three-dimensional Gross-Pitaevskii equation that describes a static impurity in a dipolar Bose-Einstein condensate. Our focus is on the interplay between the shape of the impurity and the anisotropy of the medium manifested in the energy and the density of the system. Without external confinement, properties of the system are derived with basic analytical approaches. For a system in a harmonic trap, the model is investigated numerically, using the split-step Crank-Nicolson method. Our results demonstrate that the impurity self-energy is minimized when its shape more closely aligns with the anisotropic character of the bath; in particular a prolate deformed impurity aligned with the direction of the dipoles has the smallest self-energy for a repulsive impurity. Our work complements studies of impurities in Bose gases with zero-range interactions and paves the way for studies of dipolar polarons with a Gross-Pitaevskii equation.","lang":"eng"}],"title":"Anisotropic potential immersed in a dipolar Bose-Einstein condensate","issue":"5","day":"18","author":[{"last_name":"Shukla","full_name":"Shukla, Neelam","first_name":"Neelam"},{"last_name":"Volosniev","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0393-5525","first_name":"Artem","full_name":"Volosniev, Artem"},{"full_name":"Armstrong, Jeremy R.","first_name":"Jeremy R.","last_name":"Armstrong"}],"oa":1,"OA_place":"repository","article_processing_charge":"No","OA_type":"green"},{"publisher":"EPI Sciences","file_date_updated":"2024-12-09T08:38:48Z","department":[{"_id":"KrCh"}],"arxiv":1,"alternative_title":["LMCS"],"status":"public","corr_author":"1","ec_funded":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"        20","DOAJ_listed":"1","date_published":"2024-11-12T00:00:00Z","citation":{"apa":"Chatterjee, K., &#38; Doyen, L. (2024). Stochastic processes with expected stopping time. <i>Logical Methods in Computer Science</i>. EPI Sciences. <a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">https://doi.org/10.46298/lmcs-20(4:11)2024</a>","ieee":"K. Chatterjee and L. Doyen, “Stochastic processes with expected stopping time,” <i>Logical Methods in Computer Science</i>, vol. 20, no. 4. EPI Sciences, p. 11:1-11:34, 2024.","ama":"Chatterjee K, Doyen L. Stochastic processes with expected stopping time. <i>Logical Methods in Computer Science</i>. 2024;20(4):11:1-11:34. doi:<a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">10.46298/lmcs-20(4:11)2024</a>","mla":"Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected Stopping Time.” <i>Logical Methods in Computer Science</i>, vol. 20, no. 4, EPI Sciences, 2024, p. 11:1-11:34, doi:<a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">10.46298/lmcs-20(4:11)2024</a>.","short":"K. Chatterjee, L. Doyen, Logical Methods in Computer Science 20 (2024) 11:1-11:34.","chicago":"Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected Stopping Time.” <i>Logical Methods in Computer Science</i>. EPI Sciences, 2024. <a href=\"https://doi.org/10.46298/lmcs-20(4:11)2024\">https://doi.org/10.46298/lmcs-20(4:11)2024</a>.","ista":"Chatterjee K, Doyen L. 2024. Stochastic processes with expected stopping time. Logical Methods in Computer Science. 20(4), 11:1-11:34."},"related_material":{"record":[{"status":"public","id":"10004","relation":"earlier_version"}]},"type":"journal_article","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.46298/lmcs-20(4:11)2024","scopus_import":"1","project":[{"grant_number":"863818","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"}],"_id":"18630","oa_version":"Published Version","month":"11","date_updated":"2025-09-08T14:54:14Z","quality_controlled":"1","date_created":"2024-12-08T23:01:56Z","volume":20,"file":[{"file_name":"2024_LMCS_Chatterjee.pdf","file_id":"18633","relation":"main_file","checksum":"b3315c74ce18ce0a30ed33d8c9972992","creator":"dernst","success":1,"file_size":416814,"date_updated":"2024-12-09T08:38:48Z","date_created":"2024-12-09T08:38:48Z","content_type":"application/pdf","access_level":"open_access"}],"isi":1,"publication_identifier":{"eissn":["1860-5974"]},"publication":"Logical Methods in Computer Science","year":"2024","article_type":"original","external_id":{"arxiv":["2104.07278"],"isi":["001367316400002"]},"language":[{"iso":"eng"}],"author":[{"first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"full_name":"Doyen, Laurent","first_name":"Laurent","last_name":"Doyen"}],"day":"12","ddc":["000"],"issue":"4","OA_type":"gold","article_processing_charge":"Yes","oa":1,"OA_place":"publisher","acknowledgement":"The authors are grateful to the anonymous reviewers of LICS 2021 and of a previous version of this paper for insightful comments that helped improving the presentation. The research presented in this paper was partially supported by the grant ERC CoG 863818 (ForM-SMArt).","publication_status":"published","page":"11:1-11:34","title":"Stochastic processes with expected stopping time","abstract":[{"text":"Markov chains are the de facto finite-state model for stochastic dynamical systems, and Markov decision processes (MDPs) extend Markov chains by incorporating non-deterministic behaviors. Given an MDP and rewards on states, a classical optimization criterion is the maximal expected total reward where the MDP stops after T steps, which can be computed by a simple dynamic programming algorithm. We consider a natural generalization of the problem where the stopping times can be chosen according to a probability distribution, such that the expected stopping time is T, to optimize the expected total reward. Quite surprisingly we establish inter-reducibility of the expected stopping-time problem for Markov chains with the Positivity problem (which is related to the well-known Skolem problem), for which establishing either decidability or undecidability would be a major breakthrough. Given the hardness of the exact problem, we consider the approximate version of the problem: we show that it can be solved in exponential time for Markov chains and in exponential space for MDPs.","lang":"eng"}]},{"publisher":"Elsevier","department":[{"_id":"CaHe"}],"status":"public","corr_author":"1","date_published":"2024-12-16T00:00:00Z","citation":{"ista":"Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. 2024. Development: Turing mechanics. Current Biology. 34(24), R1230–R1232.","chicago":"Hino, Naoya, Carolina Santos Fernandes Lasbarrères Camelo, and Carl-Philipp J Heisenberg. “Development: Turing Mechanics.” <i>Current Biology</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">https://doi.org/10.1016/j.cub.2024.10.065</a>.","short":"N. Hino, C. Santos Fernandes Lasbarrères Camelo, C.-P.J. Heisenberg, Current Biology 34 (2024) R1230–R1232.","mla":"Hino, Naoya, et al. “Development: Turing Mechanics.” <i>Current Biology</i>, vol. 34, no. 24, Elsevier, 2024, pp. R1230–32, doi:<a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">10.1016/j.cub.2024.10.065</a>.","ama":"Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. Development: Turing mechanics. <i>Current Biology</i>. 2024;34(24):R1230-R1232. doi:<a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">10.1016/j.cub.2024.10.065</a>","ieee":"N. Hino, C. Santos Fernandes Lasbarrères Camelo, and C.-P. J. Heisenberg, “Development: Turing mechanics,” <i>Current Biology</i>, vol. 34, no. 24. Elsevier, pp. R1230–R1232, 2024.","apa":"Hino, N., Santos Fernandes Lasbarrères Camelo, C., &#38; Heisenberg, C.-P. J. (2024). Development: Turing mechanics. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2024.10.065\">https://doi.org/10.1016/j.cub.2024.10.065</a>"},"intvolume":"        34","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","doi":"10.1016/j.cub.2024.10.065","date_created":"2024-12-15T23:01:49Z","date_updated":"2025-09-09T11:51:15Z","volume":34,"quality_controlled":"1","month":"12","_id":"18651","oa_version":"None","scopus_import":"1","publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"isi":1,"publication":"Current Biology","article_type":"letter_note","year":"2024","language":[{"iso":"eng"}],"external_id":{"isi":["001392077000001"],"pmid":["39689690"]},"pmid":1,"issue":"24","day":"16","author":[{"last_name":"Hino","id":"5299a9ce-7679-11eb-a7bc-d1e62b936307","full_name":"Hino, Naoya","first_name":"Naoya"},{"full_name":"Santos Fernandes Lasbarrères Camelo, Carolina","first_name":"Carolina","id":"6347dca5-074c-11ed-af92-a80f860d9d5b","last_name":"Santos Fernandes Lasbarrères Camelo"},{"orcid":"0000-0002-0912-4566","last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","full_name":"Heisenberg, Carl-Philipp J"}],"article_processing_charge":"No","OA_type":"closed access","page":"R1230-R1232","publication_status":"published","abstract":[{"lang":"eng","text":"Embryo axis formation begins with the localized expression of biochemical signals, which organize cell movements and determine cell fate. A quail study finds that tissue contraction and resulting long-range changes in tissue tension restrict the area where these biochemical signals are expressed."}],"title":"Development: Turing mechanics"},{"publisher":"Now Publishers","department":[{"_id":"MaMo"}],"status":"public","corr_author":"1","date_published":"2024-12-03T00:00:00Z","citation":{"chicago":"Dey, Bikash Kumar, Sidharth Jaggi, Michael Langberg, Anand D. Sarwate, and Yihan Zhang. “Codes for Adversaries: Between Worst-Case and Average-Case Jamming.” <i>Foundations and Trends in Communications and Information Theory</i>. Now Publishers, 2024. <a href=\"https://doi.org/10.1561/0100000112\">https://doi.org/10.1561/0100000112</a>.","short":"B.K. Dey, S. Jaggi, M. Langberg, A.D. Sarwate, Y. Zhang, Foundations and Trends in Communications and Information Theory 21 (2024) 300–588.","mla":"Dey, Bikash Kumar, et al. “Codes for Adversaries: Between Worst-Case and Average-Case Jamming.” <i>Foundations and Trends in Communications and Information Theory</i>, vol. 21, no. 3–4, Now Publishers, 2024, pp. 300–588, doi:<a href=\"https://doi.org/10.1561/0100000112\">10.1561/0100000112</a>.","ista":"Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. 2024. Codes for adversaries: Between worst-case and average-case jamming. Foundations and Trends in Communications and Information Theory. 21(3–4), 300–588.","ieee":"B. K. Dey, S. Jaggi, M. Langberg, A. D. Sarwate, and Y. Zhang, “Codes for adversaries: Between worst-case and average-case jamming,” <i>Foundations and Trends in Communications and Information Theory</i>, vol. 21, no. 3–4. Now Publishers, pp. 300–588, 2024.","apa":"Dey, B. K., Jaggi, S., Langberg, M., Sarwate, A. D., &#38; Zhang, Y. (2024). Codes for adversaries: Between worst-case and average-case jamming. <i>Foundations and Trends in Communications and Information Theory</i>. Now Publishers. <a href=\"https://doi.org/10.1561/0100000112\">https://doi.org/10.1561/0100000112</a>","ama":"Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. Codes for adversaries: Between worst-case and average-case jamming. <i>Foundations and Trends in Communications and Information Theory</i>. 2024;21(3-4):300-588. doi:<a href=\"https://doi.org/10.1561/0100000112\">10.1561/0100000112</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"        21","type":"journal_article","doi":"10.1561/0100000112","volume":21,"date_updated":"2024-12-16T10:38:44Z","date_created":"2024-12-15T23:01:50Z","quality_controlled":"1","_id":"18652","oa_version":"None","month":"12","scopus_import":"1","publication_identifier":{"eissn":["1567-2328"],"issn":["1567-2190"]},"publication":"Foundations and Trends in Communications and Information Theory","article_type":"original","year":"2024","language":[{"iso":"eng"}],"issue":"3-4","day":"03","author":[{"full_name":"Dey, Bikash Kumar","first_name":"Bikash Kumar","last_name":"Dey"},{"last_name":"Jaggi","full_name":"Jaggi, Sidharth","first_name":"Sidharth"},{"first_name":"Michael","full_name":"Langberg, Michael","last_name":"Langberg"},{"last_name":"Sarwate","full_name":"Sarwate, Anand D.","first_name":"Anand D."},{"orcid":"0000-0002-6465-6258","id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c","last_name":"Zhang","full_name":"Zhang, Yihan","first_name":"Yihan"}],"article_processing_charge":"No","OA_type":"closed access","page":"300-588","publication_status":"published","abstract":[{"lang":"eng","text":"Over the last 70 years, information theory and coding has enabled communication technologies that have had an astounding impact on our lives. This is possible due to the match between encoding/decoding strategies and corresponding channel models. Traditional studies of channels have taken one of two extremes: Shannon-theoretic models are inherently average-case in which channel noise is governed by a memoryless stochastic process, whereas coding-theoretic (referred to as “Hamming”) models take a worst-case, adversarial, view of the noise. However, for several existing and emerging communication systems the Shannon/average-case view may be too optimistic, whereas the Hamming/worstcase view may be too pessimistic. This monograph takes up the challenge of studying adversarial channel models that lie between the Shannon and Hamming extremes."}],"title":"Codes for adversaries: Between worst-case and average-case jamming"},{"publication":"Physical Review Applied","acknowledged_ssus":[{"_id":"NanoFab"}],"isi":1,"file":[{"file_id":"18662","relation":"main_file","file_name":"2024_PhysicalReviewApplied_Hickie.pdf","checksum":"bc29a40819abc4969867b6cd6563f7ad","file_size":3560132,"date_updated":"2024-12-16T11:13:48Z","date_created":"2024-12-16T11:13:48Z","success":1,"creator":"dernst","content_type":"application/pdf","access_level":"open_access"}],"publication_identifier":{"eissn":["2331-7019"]},"language":[{"iso":"eng"}],"external_id":{"isi":["001379155900003"]},"article_type":"original","year":"2024","article_processing_charge":"No","OA_type":"hybrid","OA_place":"publisher","oa":1,"day":"01","ddc":["530"],"author":[{"last_name":"Hickie","full_name":"Hickie, Joseph","first_name":"Joseph"},{"full_name":"Van Straaten, Barnaby","first_name":"Barnaby","last_name":"Van Straaten"},{"last_name":"Fedele","full_name":"Fedele, Federico","first_name":"Federico"},{"id":"4C473F58-F248-11E8-B48F-1D18A9856A87","last_name":"Jirovec","orcid":"0000-0002-7197-4801","first_name":"Daniel","full_name":"Jirovec, Daniel"},{"full_name":"Ballabio, Andrea","first_name":"Andrea","last_name":"Ballabio"},{"full_name":"Chrastina, Daniel","first_name":"Daniel","last_name":"Chrastina"},{"full_name":"Isella, Giovanni","first_name":"Giovanni","last_name":"Isella"},{"orcid":"0000-0001-8342-202X","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros","full_name":"Katsaros, Georgios","first_name":"Georgios"},{"last_name":"Ares","first_name":"Natalia","full_name":"Ares, Natalia"}],"issue":"6","title":"Automated long-range compensation of an rf quantum dot sensor","abstract":[{"text":"Charge sensing is a sensitive technique for probing quantum devices, of particular importance for spin-qubit readout. To achieve good readout sensitivities, the proximity of the charge sensor to the device to be measured is a necessity. However, this proximity also means that the operation of the device affects, in turn, the sensor tuning and ultimately the readout sensitivity. We present an approach for compensating for this crosstalk effect allowing for the gate voltages of the measured device to be swept in a 1-V × 1-V window while maintaining a sensor configuration chosen by a Bayesian optimizer. Our algorithm will hopefully be a major contribution to the suite of fully automated solutions required for the operation of large quantum device architectures.","lang":"eng"}],"acknowledgement":"We thank Nicholas Sim for providing help with the experiment and Sebastian Orbell for helpful discussions. This work was supported by the Royal Society, the Engineering and Physical Sciences Research Council (EPSRC) National Quantum Technology Hub in Networked Quantum Information Technology (Grant No. EP/M013243/1), Quantum Technology Capital (Grant No. EP/N014995/1), the EPSRC Platform Grant (Grant No. EP/R029229/1), the European Research Council (Grant Agreement No. 948932), the Scientific Service Units of the Institute of Science and Technology Austria through resources provided by the nanofabrication facility and, the FWF-I 05060 and HORIZON-RIA 101069515 projects.","publication_status":"published","department":[{"_id":"GeKa"}],"file_date_updated":"2024-12-16T11:13:48Z","publisher":"American Physical Society","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"        22","citation":{"short":"J. Hickie, B. Van Straaten, F. Fedele, D. Jirovec, A. Ballabio, D. Chrastina, G. Isella, G. Katsaros, N. Ares, Physical Review Applied 22 (2024).","chicago":"Hickie, Joseph, Barnaby Van Straaten, Federico Fedele, Daniel Jirovec, Andrea Ballabio, Daniel Chrastina, Giovanni Isella, Georgios Katsaros, and Natalia Ares. “Automated Long-Range Compensation of an Rf Quantum Dot Sensor.” <i>Physical Review Applied</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">https://doi.org/10.1103/PhysRevApplied.22.064026</a>.","mla":"Hickie, Joseph, et al. “Automated Long-Range Compensation of an Rf Quantum Dot Sensor.” <i>Physical Review Applied</i>, vol. 22, no. 6, 064026, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">10.1103/PhysRevApplied.22.064026</a>.","ista":"Hickie J, Van Straaten B, Fedele F, Jirovec D, Ballabio A, Chrastina D, Isella G, Katsaros G, Ares N. 2024. Automated long-range compensation of an rf quantum dot sensor. Physical Review Applied. 22(6), 064026.","ieee":"J. Hickie <i>et al.</i>, “Automated long-range compensation of an rf quantum dot sensor,” <i>Physical Review Applied</i>, vol. 22, no. 6. American Physical Society, 2024.","apa":"Hickie, J., Van Straaten, B., Fedele, F., Jirovec, D., Ballabio, A., Chrastina, D., … Ares, N. (2024). Automated long-range compensation of an rf quantum dot sensor. <i>Physical Review Applied</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">https://doi.org/10.1103/PhysRevApplied.22.064026</a>","ama":"Hickie J, Van Straaten B, Fedele F, et al. Automated long-range compensation of an rf quantum dot sensor. <i>Physical Review Applied</i>. 2024;22(6). doi:<a href=\"https://doi.org/10.1103/PhysRevApplied.22.064026\">10.1103/PhysRevApplied.22.064026</a>"},"date_published":"2024-12-01T00:00:00Z","article_number":"064026","status":"public","type":"journal_article","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"project":[{"_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1","name":"High impedance circuit quantum electrodynamics with hole spins","grant_number":"I05060"},{"name":"Integrated Germanium Quantum Technology","_id":"34c0acea-11ca-11ed-8bc3-8775e10fd452","grant_number":"101069515"}],"scopus_import":"1","date_updated":"2025-09-09T11:47:52Z","quality_controlled":"1","date_created":"2024-12-15T23:01:50Z","volume":22,"_id":"18653","month":"12","oa_version":"Published Version","doi":"10.1103/PhysRevApplied.22.064026"},{"OA_place":"repository","oa":1,"article_processing_charge":"No","OA_type":"green","issue":"20","day":"15","author":[{"last_name":"Sato","full_name":"Sato, Toshihiro","first_name":"Toshihiro"},{"full_name":"Ramshaw, B. J.","first_name":"B. J.","last_name":"Ramshaw"},{"orcid":"0000-0001-9760-3147","last_name":"Modic","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","full_name":"Modic, Kimberly A","first_name":"Kimberly A"},{"first_name":"Fakher F.","full_name":"Assaad, Fakher F.","last_name":"Assaad"}],"abstract":[{"text":"We compute the rotational anisotropy of the free energy of 𝛼−RuCl3 in an external magnetic field. This quantity, known as the magnetotropic susceptibility, 𝑘, relates to the second derivative of the free energy with respect to the angle of rotation. We have used approximation-free, auxiliary-field quantum Monte Carlo simulations for a realistic model of 𝛼−RuCl3 and optimized the path integral to alleviate the negative sign problem. This allows us to reach temperatures down to 30K—an energy scale below the dominant Kitaev coupling. We demonstrate that the magnetotropic spin susceptibility in this model of 𝛼−RuCl3 displays scaling behavior 𝑘=𝑇⁢𝑓⁡(𝐵/𝑇) at high temperatures. Once the uniform susceptibility departs from the Curie law (i.e., at the energy scale of the exchange interactions), it appears to transition to an emergent scalinglike behavior, characterized by a different function 𝑓 at lower temperatures, stemming from the locality of torque fluctuations. We observe a remarkable numerical match between experiment and simulations and we also find qualitative agreement with the pure Kitaev model. In comparison, for the XXZ Heisenberg Hamiltonian, the scaling 𝑘=𝑇⁢𝑓⁡(𝐵/𝑇) breaks down at a temperature scale where the uniform spin susceptibility deviates from the Curie law and never reemerges at low temperatures.","lang":"eng"}],"title":"Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study","publication_status":"published","acknowledgement":"We gratefully acknowledge the Gauss Centre for Supercomputing e.V. for funding this project by providing computing time on the GCS Supercomputer SUPERMUC-NG at the Leibniz Supercomputing Centre (Project No. pn73xu) as well as the scientific support and HPC resources provided by the Erlangen National High Performance Computing Center (NHR@FAU) of the Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU) under the NHR Project b133ae. NHR funding is provided by federal and Bavarian state authorities. NHR@FAU hardware is partially funded by the German Research Foundation (DFG) – 440719683. T.S. thanks funding from the Deutsche Forschungsgemeinschaft under Grant No. SA 3986/1-1 as well as the Würzburg-Dresden Cluster of Excellence on Complexity and Topology in Quantum Matter ct.qmat (EXC 2147, Project ID 390858490). F.F.A. acknowledges financial support from the German Research Foundation (DFG) under the Grant AS 120/16-1 (Project No. 493886309) that is part of the collaborative research project SFB Q-M&S funded by the Austrian Science Fund (FWF) F 86. K.A.M. thanks financial support from the Austrian Science Fund, SFB F 86, Q-M&S.","publication":"Physical Review B","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"isi":1,"language":[{"iso":"eng"}],"external_id":{"isi":["001447562900001"],"arxiv":["2312.03080"]},"article_type":"letter_note","year":"2024","type":"journal_article","date_created":"2024-12-15T23:01:50Z","date_updated":"2025-09-09T11:48:35Z","volume":110,"quality_controlled":"1","_id":"18654","oa_version":"Preprint","month":"11","project":[{"grant_number":"F8607","_id":"34ac8b51-11ca-11ed-8bc3-86c15daa9f8f","name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Scale- invariance in entangled quantum spin systems"}],"scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2312.03080","open_access":"1"}],"doi":"10.1103/PhysRevB.110.L201114","department":[{"_id":"KiMo"}],"publisher":"American Physical Society","date_published":"2024-11-15T00:00:00Z","citation":{"ista":"Sato T, Ramshaw BJ, Modic KA, Assaad FF. 2024. Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study. Physical Review B. 110(20), L201114.","mla":"Sato, Toshihiro, et al. “Scale-Invariant Magnetic Anisotropy in α-RuCl3: A Quantum Monte Carlo Study.” <i>Physical Review B</i>, vol. 110, no. 20, L201114, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">10.1103/PhysRevB.110.L201114</a>.","chicago":"Sato, Toshihiro, B. J. Ramshaw, Kimberly A Modic, and Fakher F. Assaad. “Scale-Invariant Magnetic Anisotropy in α-RuCl3: A Quantum Monte Carlo Study.” <i>Physical Review B</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">https://doi.org/10.1103/PhysRevB.110.L201114</a>.","short":"T. Sato, B.J. Ramshaw, K.A. Modic, F.F. Assaad, Physical Review B 110 (2024).","ama":"Sato T, Ramshaw BJ, Modic KA, Assaad FF. Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study. <i>Physical Review B</i>. 2024;110(20). doi:<a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">10.1103/PhysRevB.110.L201114</a>","apa":"Sato, T., Ramshaw, B. J., Modic, K. A., &#38; Assaad, F. F. (2024). Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.110.L201114\">https://doi.org/10.1103/PhysRevB.110.L201114</a>","ieee":"T. Sato, B. J. Ramshaw, K. A. Modic, and F. F. Assaad, “Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study,” <i>Physical Review B</i>, vol. 110, no. 20. American Physical Society, 2024."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"       110","status":"public","arxiv":1,"article_number":"L201114"},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2311.16631"}],"doi":"10.1214/24-ECP639","date_updated":"2025-09-09T11:46:53Z","volume":29,"date_created":"2024-12-15T23:01:51Z","quality_controlled":"1","oa_version":"Published Version","_id":"18655","month":"11","project":[{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"scopus_import":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","type":"journal_article","ec_funded":1,"corr_author":"1","status":"public","arxiv":1,"article_number":"70","date_published":"2024-11-24T00:00:00Z","citation":{"ieee":"M. Anastos, S. Diskin, D. Elboim, and M. Krivelevich, “Climbing up a random subgraph of the hypercube,” <i>Electronic Communications in Probability</i>, vol. 29. Duke University Press, 2024.","apa":"Anastos, M., Diskin, S., Elboim, D., &#38; Krivelevich, M. (2024). Climbing up a random subgraph of the hypercube. <i>Electronic Communications in Probability</i>. Duke University Press. <a href=\"https://doi.org/10.1214/24-ECP639\">https://doi.org/10.1214/24-ECP639</a>","ama":"Anastos M, Diskin S, Elboim D, Krivelevich M. Climbing up a random subgraph of the hypercube. <i>Electronic Communications in Probability</i>. 2024;29. doi:<a href=\"https://doi.org/10.1214/24-ECP639\">10.1214/24-ECP639</a>","short":"M. Anastos, S. Diskin, D. Elboim, M. Krivelevich, Electronic Communications in Probability 29 (2024).","chicago":"Anastos, Michael, Sahar Diskin, Dor Elboim, and Michael Krivelevich. “Climbing up a Random Subgraph of the Hypercube.” <i>Electronic Communications in Probability</i>. Duke University Press, 2024. <a href=\"https://doi.org/10.1214/24-ECP639\">https://doi.org/10.1214/24-ECP639</a>.","mla":"Anastos, Michael, et al. “Climbing up a Random Subgraph of the Hypercube.” <i>Electronic Communications in Probability</i>, vol. 29, 70, Duke University Press, 2024, doi:<a href=\"https://doi.org/10.1214/24-ECP639\">10.1214/24-ECP639</a>.","ista":"Anastos M, Diskin S, Elboim D, Krivelevich M. 2024. Climbing up a random subgraph of the hypercube. Electronic Communications in Probability. 29, 70."},"DOAJ_listed":"1","intvolume":"        29","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Duke University Press","department":[{"_id":"MaKw"}],"file_date_updated":"2024-12-16T07:33:34Z","publication_status":"published","acknowledgement":"Research supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413.\r\nThe authors wish to thank Ross Pinsky for his comments on an earlier version of the paper, and for bringing reference [12] to our attention. The authors are grateful to the anonymous referees for their helpful comments and suggestions.","abstract":[{"text":"Let Qd be the d-dimensional binary hypercube. We say that P={v1,…,vk} is an increasing path of length k−1 in Qd, if for every i∈[k−1] the edge vivi+1 is obtained by switching some zero coordinate in vi to a one coordinate in vi+1.\r\nForm a random subgraph Qdp by retaining each edge in E(Qd) independently with probability p. We show that there is a phase transition with respect to the length of a longest increasing path around p=ed. Let α be a constant and let p=αd. When α<e, then there exists a δ∈[0,1) such that whp a longest increasing path in Qdp is of length at most δd. On the other hand, when α>e, whp there is a path of length d−2 in Qdp, and in fact, whether it is of length d−2,d−1, or d depends on whether the all-zero and all-one vertices percolate or not.","lang":"eng"}],"title":"Climbing up a random subgraph of the hypercube","day":"24","ddc":["510"],"author":[{"first_name":"Michael","full_name":"Anastos, Michael","last_name":"Anastos","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb"},{"full_name":"Diskin, Sahar","first_name":"Sahar","last_name":"Diskin"},{"full_name":"Elboim, Dor","first_name":"Dor","last_name":"Elboim"},{"first_name":"Michael","full_name":"Krivelevich, Michael","last_name":"Krivelevich"}],"OA_place":"repository","oa":1,"article_processing_charge":"Yes","OA_type":"gold","article_type":"original","year":"2024","language":[{"iso":"eng"}],"external_id":{"arxiv":["2311.16631"],"isi":["001356019700001"]},"publication_identifier":{"eissn":["1083-589X"]},"isi":1,"file":[{"date_updated":"2024-12-16T07:33:34Z","file_size":530169,"date_created":"2024-12-16T07:33:34Z","success":1,"creator":"dernst","content_type":"application/pdf","access_level":"open_access","file_id":"18657","relation":"main_file","file_name":"2024_ElectrCommProbability_Anastos.pdf","checksum":"307a9d049325e6ca9bfe8b4a1f275983"}],"publication":"Electronic Communications in Probability"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2024-08-29T00:00:00Z","citation":{"ama":"Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2408.16575\">10.48550/arXiv.2408.16575</a>","ieee":"H. Edelsbrunner and T. Heiss, “Merge trees of periodic filtrations,” <i>arXiv</i>. .","apa":"Edelsbrunner, H., &#38; Heiss, T. (n.d.). Merge trees of periodic filtrations. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2408.16575\">https://doi.org/10.48550/arXiv.2408.16575</a>","ista":"Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. arXiv, <a href=\"https://doi.org/10.48550/arXiv.2408.16575\">10.48550/arXiv.2408.16575</a>.","chicago":"Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2408.16575\">https://doi.org/10.48550/arXiv.2408.16575</a>.","short":"H. Edelsbrunner, T. Heiss, ArXiv (n.d.).","mla":"Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.” <i>ArXiv</i>, doi:<a href=\"https://doi.org/10.48550/arXiv.2408.16575\">10.48550/arXiv.2408.16575</a>."},"arxiv":1,"ec_funded":1,"status":"public","corr_author":"1","department":[{"_id":"HeEd"}],"project":[{"name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","grant_number":"788183","call_identifier":"H2020"},{"call_identifier":"FWF","grant_number":"I02979-N35","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes"}],"date_updated":"2026-04-07T12:54:09Z","date_created":"2024-12-18T14:06:57Z","oa_version":"Preprint","_id":"18673","month":"08","doi":"10.48550/arXiv.2408.16575","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2408.16575"}],"type":"preprint","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"related_material":{"record":[{"relation":"dissertation_contains","id":"18667","status":"public"}]},"language":[{"iso":"eng"}],"external_id":{"arxiv":["2408.16575"]},"year":"2024","publication":"arXiv","title":"Merge trees of periodic filtrations","abstract":[{"text":"Motivated by applications to crystalline materials, we generalize the merge tree and the related barcode of a filtered complex to the periodic setting in Euclidean space. They are invariant under isometries, changing bases, and indeed changing lattices. In addition, we prove stability under perturbations and provide an algorithm that under mild geometric conditions typically satisfied by crystalline materials takes O((n+m)logn) time, in which n and m are the numbers of vertices and edges in the quotient complex, respectively.\r\n","lang":"eng"}],"acknowledgement":"Both authors are partially supported by the European Research Council (ERC) Horizon 2020 project\r\n‘Alpha Shape Theory Extended’, grant no. 788183. The first author is also partially supported by the DFG\r\nCollaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund\r\n(FWF), grant no. I 02979-N35.","publication_status":"draft","article_processing_charge":"No","OA_place":"repository","oa":1,"day":"29","author":[{"first_name":"Herbert","full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833"},{"first_name":"Teresa","full_name":"Heiss, Teresa","id":"4879BB4E-F248-11E8-B48F-1D18A9856A87","last_name":"Heiss","orcid":"0000-0002-1780-2689"}]}]