[{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.4171/icm2022/164","OA_type":"gold","month":"07","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","date_published":"2022-07-15T00:00:00Z","ddc":["510"],"abstract":[{"text":"The first part of this paper is a survey of mathematical results on mirror symmetry phenomena between Hitchin systems for Langlands dual groups. The second part introduces\r\nand discusses multiplicity algebras of the Hitchin system on Lagrangians, and considers\r\ncorresponding conjectural structures on their mirror.","lang":"eng"}],"publication_status":"published","file":[{"file_size":655370,"file_name":"2022_ICM_Hausel.pdf","success":1,"checksum":"d2b9d4cf51c854f1082d8dc18c5853b1","file_id":"20387","date_created":"2025-09-24T09:05:05Z","relation":"main_file","content_type":"application/pdf","access_level":"open_access","creator":"dernst","date_updated":"2025-09-24T09:05:05Z"}],"corr_author":"1","day":"15","oa":1,"language":[{"iso":"eng"}],"arxiv":1,"date_updated":"2025-09-24T09:12:13Z","oa_version":"Published Version","department":[{"_id":"TaHa"}],"conference":{"name":"ICM: International Congress of Mathematicians","location":"virtuel","end_date":"2022-07-14","start_date":"2022-07-06"},"publication_identifier":{"isbn":["9783985470587"],"eisbn":["9783985475582"]},"article_processing_charge":"No","date_created":"2025-07-10T13:13:36Z","acknowledgement":"The author thanks Nigel Hitchin for introducing him to Higgs bundles during 1995–1998,\r\nsuggesting the SYZ picture for Langlands dual Hitchin systems in 1996, and for the\r\nmore recent collaborations [29, 30]. He also thanks David Ben-Zvi, Pierre-Henri Chaudouard, Pierre Deligne, Ron Donagi, Sergei Gukov, Jochen Heinloth, Vadim Kaloshin,\r\nJoel Kamnitzer, Gérard Laumon, Anton Mellit, David Nadler, Andy Neitzke, Ngô Bao\r\nChâu, Michael Thaddeus, Tony Pantev, Du Pei, Richárd Rimányi, Leonid Rybnikov, Vivek\r\nShende, Balázs Szendrői, András Szenes, Fernando Rodriguez-Villegas, Edward Witten,\r\nand Zhiwei Yun for discussions about the subjects in this paper over the years. Thanks are\r\nalso due to Hülya Argüz, Jakub Löwit, Balázs Szendrői, and Nigel Hitchin for the careful\r\nreading of the paper.","publication":"International Congress of Mathematicians","year":"2022","external_id":{"arxiv":["2112.09455"]},"title":"Enhanced mirror symmetry for Langlands dual Hitchin systems","page":"2228-2249","OA_place":"publisher","type":"book_chapter","publisher":"EMS Press","_id":"19984","file_date_updated":"2025-09-24T09:05:05Z","author":[{"full_name":"Hausel, Tamás","first_name":"Tamás","last_name":"Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9582-2634"}],"citation":{"ieee":"T. Hausel, “Enhanced mirror symmetry for Langlands dual Hitchin systems,” in <i>International Congress of Mathematicians</i>, EMS Press, 2022, pp. 2228–2249.","ista":"Hausel T. 2022.Enhanced mirror symmetry for Langlands dual Hitchin systems. In: International Congress of Mathematicians. , 2228–2249.","mla":"Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.” <i>International Congress of Mathematicians</i>, EMS Press, 2022, pp. 2228–49, doi:<a href=\"https://doi.org/10.4171/icm2022/164\">10.4171/icm2022/164</a>.","ama":"Hausel T. Enhanced mirror symmetry for Langlands dual Hitchin systems. In: <i>International Congress of Mathematicians</i>. EMS Press; 2022:2228-2249. doi:<a href=\"https://doi.org/10.4171/icm2022/164\">10.4171/icm2022/164</a>","apa":"Hausel, T. (2022). Enhanced mirror symmetry for Langlands dual Hitchin systems. In <i>International Congress of Mathematicians</i> (pp. 2228–2249). virtuel: EMS Press. <a href=\"https://doi.org/10.4171/icm2022/164\">https://doi.org/10.4171/icm2022/164</a>","short":"T. Hausel, in:, International Congress of Mathematicians, EMS Press, 2022, pp. 2228–2249.","chicago":"Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.” In <i>International Congress of Mathematicians</i>, 2228–49. EMS Press, 2022. <a href=\"https://doi.org/10.4171/icm2022/164\">https://doi.org/10.4171/icm2022/164</a>."},"quality_controlled":"1","has_accepted_license":"1"},{"title":"Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior","article_type":"original","external_id":{"pmid":["34414600"]},"volume":90,"year":"2022","publication":"Proteins: Structure, Function, and Bioinformatics","page":"258-269","department":[{"_id":"MaJö"}],"date_created":"2024-04-03T07:49:53Z","article_processing_charge":"No","publication_identifier":{"eissn":["1097-0134"],"issn":["0887-3585"]},"author":[{"first_name":"Romina A.","last_name":"Gisonno","full_name":"Gisonno, Romina A."},{"id":"93ac43e8-8599-11eb-9b86-f6efb0a4c207","last_name":"Masson","orcid":"0000-0002-2634-6283","first_name":"Tomas","full_name":"Masson, Tomas"},{"last_name":"Ramella","first_name":"Nahuel A.","full_name":"Ramella, Nahuel A."},{"full_name":"Barrera, Exequiel E.","first_name":"Exequiel E.","last_name":"Barrera"},{"full_name":"Romanowski, Víctor","first_name":"Víctor","last_name":"Romanowski"},{"full_name":"Tricerri, M. Alejandra","last_name":"Tricerri","first_name":"M. Alejandra"}],"_id":"15268","quality_controlled":"1","citation":{"ama":"Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA. Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. <i>Proteins: Structure, Function, and Bioinformatics</i>. 2022;90(1):258-269. doi:<a href=\"https://doi.org/10.1002/prot.26217\">10.1002/prot.26217</a>","ista":"Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA. 2022. Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. Proteins: Structure, Function, and Bioinformatics. 90(1), 258–269.","mla":"Gisonno, Romina A., et al. “Evolutionary and Structural Constraints Influencing Apolipoprotein A‐I Amyloid Behavior.” <i>Proteins: Structure, Function, and Bioinformatics</i>, vol. 90, no. 1, Wiley, 2022, pp. 258–69, doi:<a href=\"https://doi.org/10.1002/prot.26217\">10.1002/prot.26217</a>.","ieee":"R. A. Gisonno, T. Masson, N. A. Ramella, E. E. Barrera, V. Romanowski, and M. A. Tricerri, “Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior,” <i>Proteins: Structure, Function, and Bioinformatics</i>, vol. 90, no. 1. Wiley, pp. 258–269, 2022.","chicago":"Gisonno, Romina A., Tomas Masson, Nahuel A. Ramella, Exequiel E. Barrera, Víctor Romanowski, and M. Alejandra Tricerri. “Evolutionary and Structural Constraints Influencing Apolipoprotein A‐I Amyloid Behavior.” <i>Proteins: Structure, Function, and Bioinformatics</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/prot.26217\">https://doi.org/10.1002/prot.26217</a>.","apa":"Gisonno, R. A., Masson, T., Ramella, N. A., Barrera, E. E., Romanowski, V., &#38; Tricerri, M. A. (2022). Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. <i>Proteins: Structure, Function, and Bioinformatics</i>. Wiley. <a href=\"https://doi.org/10.1002/prot.26217\">https://doi.org/10.1002/prot.26217</a>","short":"R.A. Gisonno, T. Masson, N.A. Ramella, E.E. Barrera, V. Romanowski, M.A. Tricerri, Proteins: Structure, Function, and Bioinformatics 90 (2022) 258–269."},"keyword":["Molecular Biology","Biochemistry","Structural Biology"],"type":"journal_article","intvolume":"        90","publisher":"Wiley","date_published":"2022-01-01T00:00:00Z","status":"public","publication_status":"published","abstract":[{"lang":"eng","text":"Apolipoprotein A‐I (apoA‐I) has a key function in the reverse cholesterol transport. However, aggregation of apoA‐I single point mutants can lead to hereditary amyloid pathology. Although several studies have tackled the biophysical and structural consequences introduced by these mutations, there is little information addressing the relationship between the evolutionary and structural features that contribute to the amyloid behavior of apoA‐I. We combined evolutionary studies, in silico mutagenesis and molecular dynamics (MD) simulations to provide a comprehensive analysis of the conservation and pathogenic role of the aggregation‐prone regions (APRs) present in apoA‐I. Sequence analysis demonstrated that among the four amyloidogenic regions described for human apoA‐I, only two (APR1 and APR4) are evolutionary conserved across different species of Sarcopterygii. Moreover, stability analysis carried out with the FoldX engine showed that APR1 contributes to the marginal stability of apoA‐I. Structural properties of full‐length apoA‐I models suggest that aggregation is avoided by placing APRs into highly packed and rigid portions of its native fold. Compared to silent variants extracted from the gnomAD database, the thermodynamic and pathogenic impact of amyloid mutations showed evidence of a higher destabilizing effect. MD simulations of the amyloid variant G26R evidenced the partial unfolding of the alpha‐helix bundle with the concomitant exposure of APR1 to the solvent, suggesting an insight into the early steps involved in its aggregation. Our findings highlight APR1 as a relevant component for apoA‐I structural integrity and emphasize a destabilizing effect of amyloid variants that leads to the exposure of this region."}],"doi":"10.1002/prot.26217","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2020.09.18.304337"}],"language":[{"iso":"eng"}],"oa":1,"issue":"1","oa_version":"Preprint","date_updated":"2024-10-09T21:08:44Z","corr_author":"1","day":"01"},{"article_type":"original","external_id":{"isi":["000773425200006"]},"title":"Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application","volume":433,"year":"2022","publication":"Chemical Engineering Journal","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020"},{"_id":"9B8804FC-BA93-11EA-9121-9846C619BF3A","name":"Bottom-up Engineering for Thermoelectric Applications","grant_number":"M02889"},{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"acknowledgement":"This work was supported by the European Regional Development Funds. MYL, YZ, DWY and KX thank the China Scholarship Council for scholarship support. YL acknowledges funding from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411 and the funding for scientific research startup of Hefei University of Technology (No. 13020-03712021049). MI acknowledges funding from IST Austria and the Werner Siemens Foundation. CC acknowledges funding from the FWF “Lise Meitner Fellowship” grant agreement M 2889-N. TZ has received funding from the CSC-UAB PhD scholarship program. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327. ICN2 thanks support from the project NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/. ICN2 is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme / Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program.","date_created":"2021-12-19T23:01:33Z","article_processing_charge":"No","publication_identifier":{"issn":["1385-8947"]},"department":[{"_id":"MaIb"}],"article_number":"133837","quality_controlled":"1","scopus_import":"1","citation":{"ieee":"M. Li <i>et al.</i>, “Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application,” <i>Chemical Engineering Journal</i>, vol. 433. Elsevier, 2022.","mla":"Li, Mengyao, et al. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” <i>Chemical Engineering Journal</i>, vol. 433, 133837, Elsevier, 2022, doi:<a href=\"https://doi.org/10.1016/j.cej.2021.133837\">10.1016/j.cej.2021.133837</a>.","ista":"Li M, Liu Y, Zhang Y, Chang C, Zhang T, Yang D, Xiao K, Arbiol J, Ibáñez M, Cabot A. 2022. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. Chemical Engineering Journal. 433, 133837.","ama":"Li M, Liu Y, Zhang Y, et al. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. <i>Chemical Engineering Journal</i>. 2022;433. doi:<a href=\"https://doi.org/10.1016/j.cej.2021.133837\">10.1016/j.cej.2021.133837</a>","short":"M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol, M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).","apa":"Li, M., Liu, Y., Zhang, Y., Chang, C., Zhang, T., Yang, D., … Cabot, A. (2022). Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. <i>Chemical Engineering Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cej.2021.133837\">https://doi.org/10.1016/j.cej.2021.133837</a>","chicago":"Li, Mengyao, Yu Liu, Yu Zhang, Cheng Chang, Ting Zhang, Dawei Yang, Ke Xiao, Jordi Arbiol, Maria Ibáñez, and Andreu Cabot. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” <i>Chemical Engineering Journal</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.cej.2021.133837\">https://doi.org/10.1016/j.cej.2021.133837</a>."},"author":[{"last_name":"Li","first_name":"Mengyao","full_name":"Li, Mengyao"},{"full_name":"Liu, Yu","first_name":"Yu","orcid":"0000-0001-7313-6740","last_name":"Liu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Zhang, Yu","last_name":"Zhang","first_name":"Yu"},{"full_name":"Chang, Cheng","orcid":"0000-0002-9515-4277","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","last_name":"Chang","first_name":"Cheng"},{"last_name":"Zhang","first_name":"Ting","full_name":"Zhang, Ting"},{"last_name":"Yang","first_name":"Dawei","full_name":"Yang, Dawei"},{"first_name":"Ke","last_name":"Xiao","full_name":"Xiao, Ke"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"_id":"10566","intvolume":"       433","publisher":"Elsevier","type":"journal_article","isi":1,"abstract":[{"text":"A versatile, scalable, room temperature and surfactant-free route for the synthesis of metal chalcogenide nanoparticles in aqueous solution is detailed here for the production of PbS and Cu-doped PbS nanoparticles. Subsequently, nanoparticles are annealed in a reducing atmosphere to remove surface oxide, and consolidated into dense polycrystalline materials by means of spark plasma sintering. By characterizing the transport properties of the sintered material, we observe the annealing step and the incorporation of Cu to play a key role in promoting the thermoelectric performance of PbS. The presence of Cu allows improving the electrical conductivity by increasing the charge carrier concentration and simultaneously maintaining a large charge carrier mobility, which overall translates into record power factors at ambient temperature, 2.3 mWm-1K−2. Simultaneously, the lattice thermal conductivity decreases with the introduction of Cu, leading to a record high ZT = 0.37 at room temperature and ZT = 1.22 at 773 K. Besides, a record average ZTave = 0.76 is demonstrated in the temperature range 320–773 K for n-type Pb0.955Cu0.045S.","lang":"eng"}],"publication_status":"published","date_published":"2022-04-01T00:00:00Z","status":"public","month":"04","main_file_link":[{"url":"https://ddd.uab.cat/pub/artpub/2022/270830/10.1016j.cej.2021.133837.pdf","open_access":"1"}],"doi":"10.1016/j.cej.2021.133837","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-04-14T07:43:48Z","oa_version":"Submitted Version","language":[{"iso":"eng"}],"ec_funded":1,"oa":1,"day":"01","corr_author":"1"},{"date_updated":"2023-08-02T13:40:43Z","oa_version":"Published Version","issue":"1","language":[{"iso":"eng"}],"oa":1,"day":"21","abstract":[{"lang":"eng","text":"The synthetic strigolactone (SL) analog, rac-GR24, has been instrumental in studying the role of SLs as well as karrikins because it activates the receptors DWARF14 (D14) and KARRIKIN INSENSITIVE 2 (KAI2) of their signaling pathways, respectively. Treatment with rac-GR24 modifies the root architecture at different levels, such as decreasing the lateral root density (LRD), while promoting root hair elongation or flavonol accumulation. Previously, we have shown that the flavonol biosynthesis is transcriptionally activated in the root by rac-GR24 treatment, but, thus far, the molecular players involved in that response have remained unknown. To get an in-depth insight into the changes that occur after the compound is perceived by the roots, we compared the root transcriptomes of the wild type and the more axillary growth2 (max2) mutant, affected in both SL and karrikin signaling pathways, with and without rac-GR24 treatment. Quantitative reverse transcription (qRT)-PCR, reporter line analysis and mutant phenotyping indicated that the flavonol response and the root hair elongation are controlled by the ELONGATED HYPOCOTYL 5 (HY5) and MYB12 transcription factors, but HY5, in contrast to MYB12, affects the LRD as well. Furthermore, we identified the transcription factors TARGET OF MONOPTEROS 5 (TMO5) and TMO5 LIKE1 as negative and the Mediator complex as positive regulators of the rac-GR24 effect on LRD. Altogether, hereby, we get closer toward understanding the molecular mechanisms that underlay the rac-GR24 responses in the root."}],"publication_status":"published","status":"public","date_published":"2022-01-21T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.1093/pcp/pcab149","open_access":"1"}],"month":"01","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1093/pcp/pcab149","pmid":1,"keyword":["flavonols","MAX2","rac-Gr24","RNA-seq","root development","transcriptional regulation"],"citation":{"ista":"Struk S, Braem L, Matthys C, Walton A, Vangheluwe N, Van Praet S, Jiang L, Baster P, De Cuyper C, Boyer F-D, Stes E, Beeckman T, Friml J, Gevaert K, Goormachtig S. 2022. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. Plant &#38; Cell Physiology. 63(1), 104–119.","mla":"Struk, Sylwia, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” <i>Plant &#38; Cell Physiology</i>, vol. 63, no. 1, Oxford University Press, 2022, pp. 104–19, doi:<a href=\"https://doi.org/10.1093/pcp/pcab149\">10.1093/pcp/pcab149</a>.","ieee":"S. Struk <i>et al.</i>, “Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density,” <i>Plant &#38; Cell Physiology</i>, vol. 63, no. 1. Oxford University Press, pp. 104–119, 2022.","ama":"Struk S, Braem L, Matthys C, et al. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. <i>Plant &#38; Cell Physiology</i>. 2022;63(1):104-119. doi:<a href=\"https://doi.org/10.1093/pcp/pcab149\">10.1093/pcp/pcab149</a>","apa":"Struk, S., Braem, L., Matthys, C., Walton, A., Vangheluwe, N., Van Praet, S., … Goormachtig, S. (2022). Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. <i>Plant &#38; Cell Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/pcp/pcab149\">https://doi.org/10.1093/pcp/pcab149</a>","short":"S. Struk, L. Braem, C. Matthys, A. Walton, N. Vangheluwe, S. Van Praet, L. Jiang, P. Baster, C. De Cuyper, F.-D. Boyer, E. Stes, T. Beeckman, J. Friml, K. Gevaert, S. Goormachtig, Plant &#38; Cell Physiology 63 (2022) 104–119.","chicago":"Struk, Sylwia, Lukas Braem, Cedrick Matthys, Alan Walton, Nick Vangheluwe, Stan Van Praet, Lingxiang Jiang, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” <i>Plant &#38; Cell Physiology</i>. Oxford University Press, 2022. <a href=\"https://doi.org/10.1093/pcp/pcab149\">https://doi.org/10.1093/pcp/pcab149</a>."},"quality_controlled":"1","scopus_import":"1","_id":"10583","author":[{"last_name":"Struk","first_name":"Sylwia","full_name":"Struk, Sylwia"},{"last_name":"Braem","first_name":"Lukas","full_name":"Braem, Lukas"},{"full_name":"Matthys, Cedrick","last_name":"Matthys","first_name":"Cedrick"},{"full_name":"Walton, Alan","last_name":"Walton","first_name":"Alan"},{"full_name":"Vangheluwe, Nick","first_name":"Nick","last_name":"Vangheluwe"},{"full_name":"Van Praet, Stan","first_name":"Stan","last_name":"Van Praet"},{"last_name":"Jiang","first_name":"Lingxiang","full_name":"Jiang, Lingxiang"},{"id":"3028BD74-F248-11E8-B48F-1D18A9856A87","last_name":"Baster","first_name":"Pawel","full_name":"Baster, Pawel"},{"first_name":"Carolien","last_name":"De Cuyper","full_name":"De Cuyper, Carolien"},{"last_name":"Boyer","first_name":"Francois-Didier","full_name":"Boyer, Francois-Didier"},{"first_name":"Elisabeth","last_name":"Stes","full_name":"Stes, Elisabeth"},{"full_name":"Beeckman, Tom","first_name":"Tom","last_name":"Beeckman"},{"first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří"},{"full_name":"Gevaert, Kris","first_name":"Kris","last_name":"Gevaert"},{"last_name":"Goormachtig","first_name":"Sofie","full_name":"Goormachtig, Sofie"}],"publisher":"Oxford University Press","intvolume":"        63","isi":1,"type":"journal_article","page":"104-119","publication":"Plant & Cell Physiology","year":"2022","volume":63,"external_id":{"isi":["000877899400009"],"pmid":["34791413"]},"title":"Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density","article_type":"original","publication_identifier":{"eissn":["1471-9053"],"issn":["0032-0781"]},"article_processing_charge":"No","acknowledgement":"The authors thank Ralf Stracke (Bielefeld University, Bielefeld, Germany) for providing the myb mutants and their colleagues Bert De Rybel for the tmo5t;mo5l1 double mutant, Boris Parizot for tips on the RNA-seq analysis, Veronique Storme for statistical help on both the RNA-seq and lateral root density, and Martine De Cock for help in preparing the manuscript.","date_created":"2021-12-28T11:44:18Z","department":[{"_id":"JiFr"}]},{"status":"public","date_published":"2022-01-01T00:00:00Z","ddc":["620"],"abstract":[{"lang":"eng","text":"Electrically tunable lenses (ETLs) are those with the ability to alter their optical power in response to an electric signal. This feature allows such systems to not only image the areas of interest but also obtain spatial depth perception (depth of field, DOF). The aim of the present study was to develop an ETL-based imaging system for quantitative surface analysis. Firstly, the system was calibrated to achieve high depth resolution, warranting the accurate measurement of the depth and to account for and correct any influences from external factors on the ETL. This was completed using the Tenengrad operator which effectively identified the plane of best focus as demonstrated by the linear relationship between the control current applied to the ETL and the height at which the optical system focuses. The system was then employed to measure amplitude, spatial, hybrid, and volume surface texture parameters of a model material (pharmaceutical dosage form) which were validated against the parameters obtained using a previously validated surface texture analysis technique, optical profilometry. There were no statistically significant differences between the surface texture parameters measured by the techniques, highlighting the potential application of ETL-based imaging systems as an easily adaptable and low-cost alternative surface texture analysis technique to conventional microscopy techniques"}],"publication_status":"published","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","doi":"10.3390/mi13010017","month":"01","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa":1,"language":[{"iso":"eng"}],"date_updated":"2023-08-09T10:16:10Z","oa_version":"Published Version","issue":"1","file":[{"relation":"main_file","content_type":"application/pdf","access_level":"open_access","creator":"alisjak","date_updated":"2022-01-03T13:43:01Z","file_size":5370675,"file_name":"2021_Micromachines_Singh.pdf","success":1,"checksum":"5d062cae3f1acb251cacb21021724c4e","file_id":"10601","date_created":"2022-01-03T13:43:01Z"}],"day":"01","publication":"Micromachines","year":"2022","volume":13,"external_id":{"isi":["000758547200001"]},"article_type":"original","title":"Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials","department":[{"_id":"KiMo"}],"publication_identifier":{"eissn":["2072-666X"]},"article_processing_charge":"Yes","acknowledgement":"The authors acknowledge the financial assistance provided by the University of Huddersfield.","date_created":"2022-01-02T23:01:33Z","_id":"10584","file_date_updated":"2022-01-03T13:43:01Z","author":[{"last_name":"Nirwan","first_name":"Jorabar Singh","full_name":"Nirwan, Jorabar Singh"},{"full_name":"Lou, Shan","last_name":"Lou","first_name":"Shan"},{"full_name":"Hussain, Saqib","first_name":"Saqib","last_name":"Hussain"},{"orcid":"0000-0002-2111-4846","last_name":"Nauman","id":"32c21954-2022-11eb-9d5f-af9f93c24e71","first_name":"Muhammad","full_name":"Nauman, Muhammad"},{"last_name":"Hussain","first_name":"Tariq","full_name":"Hussain, Tariq"},{"full_name":"Conway, Barbara R.","first_name":"Barbara R.","last_name":"Conway"},{"full_name":"Ghori, Muhammad Usman","first_name":"Muhammad Usman","last_name":"Ghori"}],"keyword":["surface texture","electrically tunable lens","materials","hypromellose","surface topography","surface roughness","pharmaceutical tablet","variable focus imaging"],"citation":{"chicago":"Nirwan, Jorabar Singh, Shan Lou, Saqib Hussain, Muhammad Nauman, Tariq Hussain, Barbara R. Conway, and Muhammad Usman Ghori. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” <i>Micromachines</i>. MDPI, 2022. <a href=\"https://doi.org/10.3390/mi13010017\">https://doi.org/10.3390/mi13010017</a>.","short":"J.S. Nirwan, S. Lou, S. Hussain, M. Nauman, T. Hussain, B.R. Conway, M.U. Ghori, Micromachines 13 (2022).","apa":"Nirwan, J. S., Lou, S., Hussain, S., Nauman, M., Hussain, T., Conway, B. R., &#38; Ghori, M. U. (2022). Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. <i>Micromachines</i>. MDPI. <a href=\"https://doi.org/10.3390/mi13010017\">https://doi.org/10.3390/mi13010017</a>","ama":"Nirwan JS, Lou S, Hussain S, et al. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. <i>Micromachines</i>. 2022;13(1). doi:<a href=\"https://doi.org/10.3390/mi13010017\">10.3390/mi13010017</a>","mla":"Nirwan, Jorabar Singh, et al. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” <i>Micromachines</i>, vol. 13, no. 1, 17, MDPI, 2022, doi:<a href=\"https://doi.org/10.3390/mi13010017\">10.3390/mi13010017</a>.","ieee":"J. S. Nirwan <i>et al.</i>, “Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials,” <i>Micromachines</i>, vol. 13, no. 1. MDPI, 2022.","ista":"Nirwan JS, Lou S, Hussain S, Nauman M, Hussain T, Conway BR, Ghori MU. 2022. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. Micromachines. 13(1), 17."},"scopus_import":"1","quality_controlled":"1","article_number":"17","has_accepted_license":"1","isi":1,"type":"journal_article","publisher":"MDPI","intvolume":"        13"},{"main_file_link":[{"open_access":"1","url":"https://www.osti.gov/biblio/1837946"}],"month":"05","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1007/s12274-021-4022-7","publication_status":"published","abstract":[{"lang":"eng","text":"Access to a blossoming library of colloidal nanomaterials provides building blocks for complex assembled materials. The journey to bring these prospects to fruition stands to benefit from the application of advanced processing methods. Epitaxially connected nanocrystal (or quantum dot) superlattices present a captivating model system for mesocrystals with intriguing emergent properties. The conventional processing approach to creating these materials involves assembling and attaching the constituent nanocrystals at the interface between two immiscible fluids. Processing small liquid volumes of the colloidal nanocrystal solution involves several complexities arising from the concurrent spreading, evaporation, assembly, and attachment. The ability of inkjet printers to deliver small (typically picoliter) liquid volumes with precise positioning is attractive to advance fundamental insights into the processing science, and thereby potentially enable new routes to incorporate the epitaxially connected superlattices into technology platforms. In this study, we identified the processing window of opportunity, including nanocrystal ink formulation and printing approach to enable delivery of colloidal nanocrystals from an inkjet nozzle onto the surface of a sessile droplet of the immiscible subphase. We demonstrate how inkjet printing can be scaled-down to enable the fabrication of epitaxially connected superlattices on patterned sub-millimeter droplets. We anticipate that insights from this work will spur on future advances to enable more mechanistic insights into the assembly processes and new avenues to create high-fidelity superlattices."}],"status":"public","date_published":"2022-05-01T00:00:00Z","day":"01","oa_version":"Submitted Version","date_updated":"2023-08-02T13:47:21Z","issue":"5","language":[{"iso":"eng"}],"oa":1,"publication_identifier":{"issn":["1998-0124"],"eissn":["1998-0000"]},"article_processing_charge":"No","acknowledgement":"This project was supported by the US Department of Energy through award (No. DE-SC0018026). The work was performed in part at the Cornell NanoScale Facility, a member of the National Nanotechnology Coordinated Infrastructure (NNCI), which is supported by the National Science Foundation (No. NNCI-1542081) and in part at the Cornell Center for Materials Research with funding from the NSF MRSEC program (No. DMR-1719875). The authors thank Beth Rhodes for the technical assistance with inkjet printing, and E. Peretz and Q. Wen for the early exploratory experiments.","date_created":"2022-01-02T23:01:34Z","department":[{"_id":"MaIb"}],"page":"4536–4543","publication":"Nano Research","year":"2022","volume":15,"article_type":"original","title":"Inkjet printing of epitaxially connected nanocrystal superlattices","external_id":{"isi":["000735340300001"]},"publisher":"Springer Nature","intvolume":"        15","isi":1,"type":"journal_article","keyword":["interfacial assembly","colloidal nanocrystal","superlattice","inkjet printing"],"citation":{"ama":"Balazs D, Erkan ND, Quien M, Hanrath T. Inkjet printing of epitaxially connected nanocrystal superlattices. <i>Nano Research</i>. 2022;15(5):4536–4543. doi:<a href=\"https://doi.org/10.1007/s12274-021-4022-7\">10.1007/s12274-021-4022-7</a>","mla":"Balazs, Daniel, et al. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” <i>Nano Research</i>, vol. 15, no. 5, Springer Nature, 2022, pp. 4536–4543, doi:<a href=\"https://doi.org/10.1007/s12274-021-4022-7\">10.1007/s12274-021-4022-7</a>.","ieee":"D. Balazs, N. D. Erkan, M. Quien, and T. Hanrath, “Inkjet printing of epitaxially connected nanocrystal superlattices,” <i>Nano Research</i>, vol. 15, no. 5. Springer Nature, pp. 4536–4543, 2022.","ista":"Balazs D, Erkan ND, Quien M, Hanrath T. 2022. Inkjet printing of epitaxially connected nanocrystal superlattices. Nano Research. 15(5), 4536–4543.","chicago":"Balazs, Daniel, N. Deniz Erkan, Michelle Quien, and Tobias Hanrath. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” <i>Nano Research</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s12274-021-4022-7\">https://doi.org/10.1007/s12274-021-4022-7</a>.","apa":"Balazs, D., Erkan, N. D., Quien, M., &#38; Hanrath, T. (2022). Inkjet printing of epitaxially connected nanocrystal superlattices. <i>Nano Research</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s12274-021-4022-7\">https://doi.org/10.1007/s12274-021-4022-7</a>","short":"D. Balazs, N.D. Erkan, M. Quien, T. Hanrath, Nano Research 15 (2022) 4536–4543."},"scopus_import":"1","quality_controlled":"1","_id":"10587","author":[{"first_name":"Daniel","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","last_name":"Balazs","orcid":"0000-0001-7597-043X","full_name":"Balazs, Daniel"},{"full_name":"Erkan, N. Deniz","first_name":"N. Deniz","last_name":"Erkan"},{"last_name":"Quien","first_name":"Michelle","full_name":"Quien, Michelle"},{"last_name":"Hanrath","first_name":"Tobias","full_name":"Hanrath, Tobias"}]},{"page":"1815-1832","volume":384,"external_id":{"arxiv":["2110.05137"],"isi":["000734150200001"]},"article_type":"original","title":"Sobolev-to-Lipschitz property on QCD- spaces and applications","project":[{"name":"Optimal Transport and Stochastic Dynamics","_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"716117"},{"grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publication":"Mathematische Annalen","year":"2022","article_processing_charge":"Yes (via OA deal)","date_created":"2022-01-02T23:01:35Z","acknowledgement":"The authors are grateful to Dr. Bang-Xian Han for helpful discussions on the Sobolev-to-Lipschitz property on metric measure spaces, and to Professor Kazuhiro Kuwae, Professor Emanuel Milman, Dr. Giorgio Stefani, and Dr. Gioacchino Antonelli for reading a preliminary version of this work and for their valuable comments and suggestions. Finally, they wish to express their gratitude to two anonymous Reviewers whose suggestions improved the presentation of this work.\r\n\r\nL.D.S. gratefully acknowledges funding of his position by the Austrian Science Fund (FWF) grant F65, and by the European Research Council (ERC, grant No. 716117, awarded to Prof. Dr. Jan Maas).\r\n\r\nK.S. gratefully acknowledges funding by: the JSPS Overseas Research Fellowships, Grant Nr. 290142; World Premier International Research Center Initiative (WPI), MEXT, Japan; JSPS Grant-in-Aid for Scientific Research on Innovative Areas “Discrete Geometric Analysis for Materials Design”, Grant Number 17H06465; and the Alexander von Humboldt Stiftung, Humboldt-Forschungsstipendium.","publication_identifier":{"eissn":["1432-1807"],"issn":["0025-5831"]},"department":[{"_id":"JaMa"}],"quality_controlled":"1","scopus_import":"1","has_accepted_license":"1","keyword":["quasi curvature-dimension condition","sub-riemannian geometry","Sobolev-to-Lipschitz property","Varadhan short-time asymptotics"],"citation":{"ama":"Dello Schiavo L, Suzuki K. Sobolev-to-Lipschitz property on QCD- spaces and applications. <i>Mathematische Annalen</i>. 2022;384:1815-1832. doi:<a href=\"https://doi.org/10.1007/s00208-021-02331-2\">10.1007/s00208-021-02331-2</a>","ieee":"L. Dello Schiavo and K. Suzuki, “Sobolev-to-Lipschitz property on QCD- spaces and applications,” <i>Mathematische Annalen</i>, vol. 384. Springer Nature, pp. 1815–1832, 2022.","mla":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” <i>Mathematische Annalen</i>, vol. 384, Springer Nature, 2022, pp. 1815–32, doi:<a href=\"https://doi.org/10.1007/s00208-021-02331-2\">10.1007/s00208-021-02331-2</a>.","ista":"Dello Schiavo L, Suzuki K. 2022. Sobolev-to-Lipschitz property on QCD- spaces and applications. Mathematische Annalen. 384, 1815–1832.","chicago":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” <i>Mathematische Annalen</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00208-021-02331-2\">https://doi.org/10.1007/s00208-021-02331-2</a>.","apa":"Dello Schiavo, L., &#38; Suzuki, K. (2022). Sobolev-to-Lipschitz property on QCD- spaces and applications. <i>Mathematische Annalen</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00208-021-02331-2\">https://doi.org/10.1007/s00208-021-02331-2</a>","short":"L. Dello Schiavo, K. Suzuki, Mathematische Annalen 384 (2022) 1815–1832."},"file_date_updated":"2022-01-03T11:08:31Z","_id":"10588","author":[{"full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","last_name":"Dello Schiavo","first_name":"Lorenzo"},{"last_name":"Suzuki","first_name":"Kohei","full_name":"Suzuki, Kohei"}],"intvolume":"       384","publisher":"Springer Nature","isi":1,"type":"journal_article","ddc":["510"],"abstract":[{"lang":"eng","text":"We prove the Sobolev-to-Lipschitz property for metric measure spaces satisfying the quasi curvature-dimension condition recently introduced in Milman (Commun Pure Appl Math, to appear). We provide several applications to properties of the corresponding heat semigroup. In particular, under the additional assumption of infinitesimal Hilbertianity, we show the Varadhan short-time asymptotics for the heat semigroup with respect to the distance, and prove the irreducibility of the heat semigroup. These results apply in particular to large classes of (ideal) sub-Riemannian manifolds."}],"publication_status":"published","date_published":"2022-12-01T00:00:00Z","status":"public","month":"12","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1007/s00208-021-02331-2","oa_version":"Published Version","date_updated":"2025-04-14T07:27:46Z","arxiv":1,"oa":1,"language":[{"iso":"eng"}],"ec_funded":1,"day":"01","corr_author":"1","file":[{"file_size":410090,"file_name":"2021_MathAnn_DelloSchiavo.pdf","success":1,"file_id":"10596","date_created":"2022-01-03T11:08:31Z","checksum":"2593abbf195e38efa93b6006b1e90eb1","relation":"main_file","content_type":"application/pdf","date_updated":"2022-01-03T11:08:31Z","access_level":"open_access","creator":"alisjak"}]},{"department":[{"_id":"AnHi"}],"article_processing_charge":"No","date_created":"2022-01-02T23:01:35Z","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"volume":18,"external_id":{"isi":["000733431000007"]},"article_type":"letter_note","title":"A secret source","publication":"Nature Physics","year":"2022","page":"126","isi":1,"type":"journal_article","intvolume":"        18","publisher":"Springer Nature","_id":"10589","author":[{"last_name":"Higginbotham","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2607-2363","first_name":"Andrew P","full_name":"Higginbotham, Andrew P"}],"scopus_import":"1","quality_controlled":"1","keyword":["superconducting devices","superconducting properties and materials"],"citation":{"ieee":"A. P. Higginbotham, “A secret source,” <i>Nature Physics</i>, vol. 18. Springer Nature, p. 126, 2022.","ista":"Higginbotham AP. 2022. A secret source. Nature Physics. 18, 126.","mla":"Higginbotham, Andrew P. “A Secret Source.” <i>Nature Physics</i>, vol. 18, Springer Nature, 2022, p. 126, doi:<a href=\"https://doi.org/10.1038/s41567-021-01459-x\">10.1038/s41567-021-01459-x</a>.","ama":"Higginbotham AP. A secret source. <i>Nature Physics</i>. 2022;18:126. doi:<a href=\"https://doi.org/10.1038/s41567-021-01459-x\">10.1038/s41567-021-01459-x</a>","short":"A.P. Higginbotham, Nature Physics 18 (2022) 126.","apa":"Higginbotham, A. P. (2022). A secret source. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-021-01459-x\">https://doi.org/10.1038/s41567-021-01459-x</a>","chicago":"Higginbotham, Andrew P. “A Secret Source.” <i>Nature Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41567-021-01459-x\">https://doi.org/10.1038/s41567-021-01459-x</a>."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1038/s41567-021-01459-x","month":"02","date_published":"2022-02-01T00:00:00Z","status":"public","publication_status":"published","abstract":[{"lang":"eng","text":"Superconducting devices ubiquitously have an excess of broken Cooper pairs, which can hamper their performance. It is widely believed that external radiation is responsible but a study now suggests there must be an additional, unknown source."}],"corr_author":"1","day":"01","language":[{"iso":"eng"}],"oa_version":"None","date_updated":"2024-10-09T21:01:21Z"},{"publication_identifier":{"issn":["0022-2488"],"eissn":["1089-7658"]},"article_processing_charge":"No","date_created":"2022-01-03T12:19:48Z","acknowledgement":"J.H. acknowledges partial financial support from ERC Advanced Grant “RMTBeyond” No. 101020331.","department":[{"_id":"GradSch"},{"_id":"LaEr"}],"publication":"Journal of Mathematical Physics","project":[{"grant_number":"101020331","call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"year":"2022","volume":63,"external_id":{"isi":["000739446000009"],"arxiv":["2012.15238"]},"title":"Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap","article_type":"original","publisher":"AIP Publishing","intvolume":"        63","isi":1,"type":"journal_article","keyword":["mathematical physics","statistical and nonlinear physics"],"citation":{"ama":"Henheik SJ, Teufel S. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. <i>Journal of Mathematical Physics</i>. 2022;63(1). doi:<a href=\"https://doi.org/10.1063/5.0051632\">10.1063/5.0051632</a>","ieee":"S. J. Henheik and S. Teufel, “Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap,” <i>Journal of Mathematical Physics</i>, vol. 63, no. 1. AIP Publishing, 2022.","ista":"Henheik SJ, Teufel S. 2022. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. Journal of Mathematical Physics. 63(1), 011901.","mla":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” <i>Journal of Mathematical Physics</i>, vol. 63, no. 1, 011901, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0051632\">10.1063/5.0051632</a>.","chicago":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0051632\">https://doi.org/10.1063/5.0051632</a>.","short":"S.J. Henheik, S. Teufel, Journal of Mathematical Physics 63 (2022).","apa":"Henheik, S. J., &#38; Teufel, S. (2022). Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0051632\">https://doi.org/10.1063/5.0051632</a>"},"article_number":"011901","quality_controlled":"1","scopus_import":"1","_id":"10600","author":[{"first_name":"Sven Joscha","orcid":"0000-0003-1106-327X","last_name":"Henheik","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","full_name":"Henheik, Sven Joscha"},{"last_name":"Teufel","first_name":"Stefan","full_name":"Teufel, Stefan"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2012.15238"}],"month":"01","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1063/5.0051632","publication_status":"published","abstract":[{"lang":"eng","text":"We show that recent results on adiabatic theory for interacting gapped many-body systems on finite lattices remain valid in the thermodynamic limit. More precisely, we prove a generalized super-adiabatic theorem for the automorphism group describing the infinite volume dynamics on the quasi-local algebra of observables. The key assumption is the existence of a sequence of gapped finite volume Hamiltonians, which generates the same infinite volume dynamics in the thermodynamic limit. Our adiabatic theorem also holds for certain perturbations of gapped ground states that close the spectral gap (so it is also an adiabatic theorem for resonances and, in this sense, “generalized”), and it provides an adiabatic approximation to all orders in the adiabatic parameter (a property often called “super-adiabatic”). In addition to the existing results for finite lattices, we also perform a resummation of the adiabatic expansion and allow for observables that are not strictly local. Finally, as an application, we prove the validity of linear and higher order response theory for our class of perturbations for infinite systems. While we consider the result and its proof as new and interesting in itself, we also lay the foundation for the proof of an adiabatic theorem for systems with a gap only in the bulk, which will be presented in a follow-up article."}],"status":"public","date_published":"2022-01-03T00:00:00Z","day":"03","arxiv":1,"oa_version":"Preprint","date_updated":"2025-04-14T07:57:17Z","issue":"1","ec_funded":1,"oa":1,"language":[{"iso":"eng"}]},{"department":[{"_id":"KrCh"}],"publication_identifier":{"issn":["0001-5903"],"eissn":["1432-0525"]},"article_processing_charge":"Yes (via OA deal)","date_created":"2022-01-06T12:37:27Z","acknowledgement":"This work is partially funded by the German Research Foundation (DFG) projects Verified Model Checkers (No. 317422601) and Statistical Unbounded Verification (No. 383882557), and the Alexander von Humboldt Foundation with funds from the German Federal Ministry of Education and Research. It is an extended version of [21], including all proofs together with further explanations and examples. Moreover, we provide a new, more efficient construction based on (total) preorders, unifying previous optimizations. Experiments are performed with a new, performant implementation, comparing our approach to the current state of the art.","project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"publication":"Acta Informatica","year":"2022","volume":59,"article_type":"original","title":"Index appearance record with preorders","external_id":{"isi":["000735765500001"]},"page":"585-618","isi":1,"type":"journal_article","publisher":"Springer Nature","intvolume":"        59","_id":"10602","file_date_updated":"2022-01-07T07:50:31Z","author":[{"full_name":"Kretinsky, Jan","last_name":"Kretinsky","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8122-2881","first_name":"Jan"},{"full_name":"Meggendorfer, Tobias","orcid":"0000-0002-1712-2165","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","last_name":"Meggendorfer","first_name":"Tobias"},{"full_name":"Waldmann, Clara","last_name":"Waldmann","first_name":"Clara"},{"first_name":"Maximilian","last_name":"Weininger","full_name":"Weininger, Maximilian"}],"keyword":["computer networks and communications","information systems","software"],"citation":{"chicago":"Kretinsky, Jan, Tobias Meggendorfer, Clara Waldmann, and Maximilian Weininger. “Index Appearance Record with Preorders.” <i>Acta Informatica</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00236-021-00412-y\">https://doi.org/10.1007/s00236-021-00412-y</a>.","apa":"Kretinsky, J., Meggendorfer, T., Waldmann, C., &#38; Weininger, M. (2022). Index appearance record with preorders. <i>Acta Informatica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00236-021-00412-y\">https://doi.org/10.1007/s00236-021-00412-y</a>","short":"J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, Acta Informatica 59 (2022) 585–618.","ama":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. Index appearance record with preorders. <i>Acta Informatica</i>. 2022;59:585-618. doi:<a href=\"https://doi.org/10.1007/s00236-021-00412-y\">10.1007/s00236-021-00412-y</a>","mla":"Kretinsky, Jan, et al. “Index Appearance Record with Preorders.” <i>Acta Informatica</i>, vol. 59, Springer Nature, 2022, pp. 585–618, doi:<a href=\"https://doi.org/10.1007/s00236-021-00412-y\">10.1007/s00236-021-00412-y</a>.","ieee":"J. Kretinsky, T. Meggendorfer, C. Waldmann, and M. Weininger, “Index appearance record with preorders,” <i>Acta Informatica</i>, vol. 59. Springer Nature, pp. 585–618, 2022.","ista":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. 2022. Index appearance record with preorders. Acta Informatica. 59, 585–618."},"scopus_import":"1","quality_controlled":"1","has_accepted_license":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1007/s00236-021-00412-y","month":"10","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","date_published":"2022-10-01T00:00:00Z","ddc":["000"],"publication_status":"published","abstract":[{"lang":"eng","text":"Transforming ω-automata into parity automata is traditionally done using appearance records. We present an efficient variant of this idea, tailored to Rabin automata, and several optimizations applicable to all appearance records. We compare the methods experimentally and show that our method produces significantly smaller automata than previous approaches."}],"file":[{"creator":"cchlebak","access_level":"open_access","date_updated":"2022-01-07T07:50:31Z","content_type":"application/pdf","relation":"main_file","checksum":"bf1c195b6aaf59e8530cf9e3a9d731f7","date_created":"2022-01-07T07:50:31Z","file_id":"10603","success":1,"file_size":1066082,"file_name":"2021_ActaInfor_Křetínský.pdf"}],"corr_author":"1","day":"01","oa":1,"language":[{"iso":"eng"}],"oa_version":"Published Version","date_updated":"2025-04-15T06:53:08Z"},{"language":[{"iso":"eng"}],"oa":1,"issue":"1","oa_version":"Published Version","date_updated":"2025-06-11T13:45:56Z","file":[{"date_updated":"2022-07-29T06:59:10Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf","relation":"main_file","date_created":"2022-07-29T06:59:10Z","file_id":"11689","checksum":"7e9a37e3b65b480cd7014a6a4a7e460a","success":1,"file_size":2435185,"file_name":"2022_EvolutionLetters_Turelli.pdf"}],"day":"01","status":"public","date_published":"2022-02-01T00:00:00Z","publication_status":"published","abstract":[{"text":"Maternally inherited Wolbachia transinfections are being introduced into natural mosquito populations to reduce the transmission of dengue, Zika, and other arboviruses. Wolbachia-induced cytoplasmic incompatibility provides a frequency-dependent reproductive advantage to infected females that can spread transinfections within and among populations. However, because transinfections generally reduce host fitness, they tend to spread within populations only after their frequency exceeds a critical threshold. This produces bistability with stable equilibrium frequencies at both 0 and 1, analogous to the bistability produced by underdominance between alleles or karyotypes and by population dynamics under Allee effects. Here, we analyze how stochastic frequency variation produced by finite population size can facilitate the local spread of variants with bistable dynamics into areas where invasion is unexpected from deterministic models. Our exemplar is the establishment of wMel Wolbachia in the Aedes aegypti population of Pyramid Estates (PE), a small community in far north Queensland, Australia. In 2011, wMel was stably introduced into Gordonvale, separated from PE by barriers to A. aegypti dispersal. After nearly 6 years during which wMel was observed only at low frequencies in PE, corresponding to an apparent equilibrium between immigration and selection, wMel rose to fixation by 2018. Using analytic approximations and statistical analyses, we demonstrate that the observed fixation of wMel at PE is consistent with both stochastic transition past an unstable threshold frequency and deterministic transformation produced by steady immigration at a rate just above the threshold required for deterministic invasion. The indeterminacy results from a delicate balance of parameters needed to produce the delayed transition observed. Our analyses suggest that once Wolbachia transinfections are established locally through systematic introductions, stochastic “threshold crossing” is likely to only minimally enhance spatial spread, providing a local ratchet that slightly—but systematically—aids area-wide transformation of disease-vector populations in heterogeneous landscapes.","lang":"eng"}],"ddc":["570"],"pmid":1,"doi":"10.1002/evl3.270","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","author":[{"full_name":"Turelli, Michael","last_name":"Turelli","first_name":"Michael"},{"first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","orcid":"0000-0002-8548-5240","full_name":"Barton, Nicholas H"}],"file_date_updated":"2022-07-29T06:59:10Z","_id":"10604","citation":{"ieee":"M. Turelli and N. H. Barton, “Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control,” <i>Evolution Letters</i>, vol. 6, no. 1. Wiley, pp. 92–105, 2022.","ista":"Turelli M, Barton NH. 2022. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. Evolution Letters. 6(1), 92–105.","mla":"Turelli, Michael, and Nicholas H. Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” <i>Evolution Letters</i>, vol. 6, no. 1, Wiley, 2022, pp. 92–105, doi:<a href=\"https://doi.org/10.1002/evl3.270\">10.1002/evl3.270</a>.","ama":"Turelli M, Barton NH. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. <i>Evolution Letters</i>. 2022;6(1):92-105. doi:<a href=\"https://doi.org/10.1002/evl3.270\">10.1002/evl3.270</a>","apa":"Turelli, M., &#38; Barton, N. H. (2022). Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. <i>Evolution Letters</i>. Wiley. <a href=\"https://doi.org/10.1002/evl3.270\">https://doi.org/10.1002/evl3.270</a>","short":"M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.","chicago":"Turelli, Michael, and Nicholas H Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” <i>Evolution Letters</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/evl3.270\">https://doi.org/10.1002/evl3.270</a>."},"keyword":["genetics","ecology","evolution","behavior and systematics"],"has_accepted_license":"1","scopus_import":"1","quality_controlled":"1","type":"journal_article","isi":1,"publisher":"Wiley","intvolume":"         6","year":"2022","publication":"Evolution Letters","external_id":{"isi":["000754412600008"],"pmid":["35127140"]},"title":"Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control","article_type":"original","volume":6,"related_material":{"record":[{"status":"public","id":"11686","relation":"research_data"}]},"page":"92-105","department":[{"_id":"NiBa"}],"publication_identifier":{"eissn":["2056-3744"]},"acknowledgement":"We thank S. O'Neill, C. Simmons, and the World Mosquito Project for providing access to unpublished data. S. Ritchie provided valuable insights into Aedes aegypti biology and the literature describing A. aegypti populations near Cairns. We thank B. Cooper for help with the figures and D. Shropshire, S. O'Neill, S. Ritchie, A. Hoffmann, B. Cooper, and members of the Cooper lab for comments on an earlier draft. Comments from three reviewers greatly improved our presentation.","date_created":"2022-01-09T09:45:17Z","article_processing_charge":"No"},{"citation":{"apa":"Weighill, T., Yamauchi, T., &#38; Zava, N. (2022). Coarse infinite-dimensionality of hyperspaces of finite subsets. <i>European Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40879-021-00515-3\">https://doi.org/10.1007/s40879-021-00515-3</a>","short":"T. Weighill, T. Yamauchi, N. Zava, European Journal of Mathematics 8 (2022) 335–355.","chicago":"Weighill, Thomas, Takamitsu Yamauchi, and Nicolò Zava. “Coarse Infinite-Dimensionality of Hyperspaces of Finite Subsets.” <i>European Journal of Mathematics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s40879-021-00515-3\">https://doi.org/10.1007/s40879-021-00515-3</a>.","ista":"Weighill T, Yamauchi T, Zava N. 2022. Coarse infinite-dimensionality of hyperspaces of finite subsets. European Journal of Mathematics. 8(1), 335–355.","ieee":"T. Weighill, T. Yamauchi, and N. Zava, “Coarse infinite-dimensionality of hyperspaces of finite subsets,” <i>European Journal of Mathematics</i>, vol. 8, no. 1. Springer Nature, pp. 335–355, 2022.","mla":"Weighill, Thomas, et al. “Coarse Infinite-Dimensionality of Hyperspaces of Finite Subsets.” <i>European Journal of Mathematics</i>, vol. 8, no. 1, Springer Nature, 2022, pp. 335–55, doi:<a href=\"https://doi.org/10.1007/s40879-021-00515-3\">10.1007/s40879-021-00515-3</a>.","ama":"Weighill T, Yamauchi T, Zava N. Coarse infinite-dimensionality of hyperspaces of finite subsets. <i>European Journal of Mathematics</i>. 2022;8(1):335-355. doi:<a href=\"https://doi.org/10.1007/s40879-021-00515-3\">10.1007/s40879-021-00515-3</a>"},"quality_controlled":"1","scopus_import":"1","has_accepted_license":"1","file_date_updated":"2024-05-22T11:10:10Z","_id":"10608","author":[{"first_name":"Thomas","last_name":"Weighill","full_name":"Weighill, Thomas"},{"last_name":"Yamauchi","first_name":"Takamitsu","full_name":"Yamauchi, Takamitsu"},{"full_name":"Zava, Nicolò","orcid":"0000-0001-8686-1888","id":"c8b3499c-7a77-11eb-b046-aa368cbbf2ad","last_name":"Zava","first_name":"Nicolò"}],"publisher":"Springer Nature","intvolume":"         8","type":"journal_article","page":"335-355","publication":"European Journal of Mathematics","year":"2022","volume":8,"article_type":"original","title":"Coarse infinite-dimensionality of hyperspaces of finite subsets","publication_identifier":{"eissn":["2199-6768"],"issn":["2199-675X"]},"article_processing_charge":"Yes (via OA deal)","acknowledgement":"We would like to thank the referees for their careful reading and the comments that improved our work. The third named author would like to thank the Division of Mathematics, Physics and Earth Sciences of the Graduate School of Science and Engineering of Ehime University and the second named author for hosting his visit in June 2018. Open access funding provided by Institute of Science and Technology (IST Austria).","date_created":"2022-01-09T23:01:27Z","department":[{"_id":"HeEd"}],"date_updated":"2024-05-22T11:10:22Z","oa_version":"Published Version","issue":"1","language":[{"iso":"eng"}],"oa":1,"day":"01","file":[{"creator":"kschuh","access_level":"open_access","date_updated":"2024-05-22T11:10:10Z","content_type":"application/pdf","relation":"main_file","checksum":"ce35cbb2d8c889dc7750719972634ed4","date_created":"2024-05-22T11:10:10Z","file_id":"17036","success":1,"file_name":"2022_EuJournalMath_Weighill.pdf","file_size":371515}],"ddc":["500"],"publication_status":"published","abstract":[{"text":"We consider infinite-dimensional properties in coarse geometry for hyperspaces consisting of finite subsets of metric spaces with the Hausdorff metric. We see that several infinite-dimensional properties are preserved by taking the hyperspace of subsets with at most n points. On the other hand, we prove that, if a metric space contains a sequence of long intervals coarsely, then its hyperspace of finite subsets is not coarsely embeddable into any uniformly convex Banach space. As a corollary, the hyperspace of finite subsets of the real line is not coarsely embeddable into any uniformly convex Banach space. It is also shown that every (not necessarily bounded geometry) metric space with straight finite decomposition complexity has metric sparsification property.","lang":"eng"}],"status":"public","date_published":"2022-03-01T00:00:00Z","month":"03","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","doi":"10.1007/s40879-021-00515-3"},{"intvolume":"        96","publisher":"American Society for Microbiology","type":"journal_article","isi":1,"scopus_import":"1","quality_controlled":"1","article_number":"e02146-21","citation":{"apa":"Windhaber, S., Xin, Q., Uckeley, Z. M., Koch, J., Obr, M., Garnier, C., … Lozach, P.-Y. (2022). The Orthobunyavirus Germiston enters host cells from late endosomes. <i>Journal of Virology</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/jvi.02146-21\">https://doi.org/10.1128/jvi.02146-21</a>","short":"S. Windhaber, Q. Xin, Z.M. Uckeley, J. Koch, M. Obr, C. Garnier, C. Luengo-Guyonnot, M. Duboeuf, F.K. Schur, P.-Y. Lozach, Journal of Virology 96 (2022).","chicago":"Windhaber, Stefan, Qilin Xin, Zina M. Uckeley, Jana Koch, Martin Obr, Céline Garnier, Catherine Luengo-Guyonnot, Maëva Duboeuf, Florian KM Schur, and Pierre-Yves Lozach. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” <i>Journal of Virology</i>. American Society for Microbiology, 2022. <a href=\"https://doi.org/10.1128/jvi.02146-21\">https://doi.org/10.1128/jvi.02146-21</a>.","ieee":"S. Windhaber <i>et al.</i>, “The Orthobunyavirus Germiston enters host cells from late endosomes,” <i>Journal of Virology</i>, vol. 96, no. 5. American Society for Microbiology, 2022.","ista":"Windhaber S, Xin Q, Uckeley ZM, Koch J, Obr M, Garnier C, Luengo-Guyonnot C, Duboeuf M, Schur FK, Lozach P-Y. 2022. The Orthobunyavirus Germiston enters host cells from late endosomes. Journal of Virology. 96(5), e02146-21.","mla":"Windhaber, Stefan, et al. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” <i>Journal of Virology</i>, vol. 96, no. 5, e02146-21, American Society for Microbiology, 2022, doi:<a href=\"https://doi.org/10.1128/jvi.02146-21\">10.1128/jvi.02146-21</a>.","ama":"Windhaber S, Xin Q, Uckeley ZM, et al. The Orthobunyavirus Germiston enters host cells from late endosomes. <i>Journal of Virology</i>. 2022;96(5). doi:<a href=\"https://doi.org/10.1128/jvi.02146-21\">10.1128/jvi.02146-21</a>"},"keyword":["virology","insect science","immunology","microbiology"],"author":[{"last_name":"Windhaber","first_name":"Stefan","full_name":"Windhaber, Stefan"},{"last_name":"Xin","first_name":"Qilin","full_name":"Xin, Qilin"},{"full_name":"Uckeley, Zina M.","last_name":"Uckeley","first_name":"Zina M."},{"last_name":"Koch","first_name":"Jana","full_name":"Koch, Jana"},{"full_name":"Obr, Martin","orcid":"0000-0003-1756-6564","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87","last_name":"Obr","first_name":"Martin"},{"full_name":"Garnier, Céline","first_name":"Céline","last_name":"Garnier"},{"full_name":"Luengo-Guyonnot, Catherine","last_name":"Luengo-Guyonnot","first_name":"Catherine"},{"first_name":"Maëva","last_name":"Duboeuf","full_name":"Duboeuf, Maëva"},{"full_name":"Schur, Florian KM","first_name":"Florian KM","orcid":"0000-0003-4790-8078","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","last_name":"Schur"},{"last_name":"Lozach","first_name":"Pierre-Yves","full_name":"Lozach, Pierre-Yves"}],"_id":"10639","date_created":"2022-01-18T10:04:18Z","acknowledgement":"This work  was  supported  by  INRAE  starter  funds, Project IDEXLYON  (University  of  Lyon) within  the  Programme  Investissements  d’Avenir  (ANR-16-IDEX-0005),  and  FINOVIAO14 (Fondation  pour  l’Université  de  Lyon),  all  to  P.Y.L.  This  work  was  also  supported  by CellNetworks  Research  Group  funds  and  Deutsche  Forschungsgemeinschaft  (DFG)  funding (grant  numbers  LO-2338/1-1  and  LO-2338/3-1)  awarded  to  P.Y.L., Austrian  Science  Fund (FWF)  grant  P31445  to  F.K.M.S., a  Chinese  Scholarship  Council (CSC;no.  201904910701) fellowship  to   Q.X.,  and  a  ministére  de  l’enseignement  supérieur,  de  la  recherche  et  de l’innovation (MESRI) doctoral thesis grant to M.D.","article_processing_charge":"No","acknowledged_ssus":[{"_id":"EM-Fac"}],"publication_identifier":{"issn":["0022-538X"],"eissn":["1098-5514"]},"department":[{"_id":"FlSc"}],"external_id":{"isi":["000779305000033"],"pmid":["35019710"]},"title":"The Orthobunyavirus Germiston enters host cells from late endosomes","article_type":"original","volume":96,"year":"2022","publication":"Journal of Virology","project":[{"_id":"26736D6A-B435-11E9-9278-68D0E5697425","name":"Structural conservation and diversity in retroviral capsid","grant_number":"P31445","call_identifier":"FWF"}],"day":"01","issue":"5","oa_version":"Published Version","date_updated":"2025-04-15T08:24:49Z","oa":1,"language":[{"iso":"eng"}],"month":"03","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8906410","open_access":"1"}],"pmid":1,"doi":"10.1128/jvi.02146-21","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"lang":"eng","text":"With more than 80 members worldwide, the Orthobunyavirus genus in the Peribunyaviridae family is a large genus of enveloped RNA viruses, many of which are emerging pathogens in humans and livestock. How orthobunyaviruses (OBVs) penetrate and infect mammalian host cells remains poorly characterized. Here, we investigated the entry mechanisms of the OBV Germiston (GERV). Viral particles were visualized by cryo-electron microscopy and appeared roughly spherical with an average diameter of 98 nm. Labeling of the virus with fluorescent dyes did not adversely affect its infectivity and allowed the monitoring of single particles in fixed and live cells. Using this approach, we found that endocytic internalization of bound viruses was asynchronous and occurred within 30-40 min. The virus entered Rab5a+ early endosomes and, subsequently, late endosomal vacuoles containing Rab7a but not LAMP-1. Infectious entry did not require proteolytic cleavage, and endosomal acidification was sufficient and necessary for viral fusion. Acid-activated penetration began 15-25 min after initiation of virus internalization and relied on maturation of early endosomes to late endosomes. The optimal pH for viral membrane fusion was slightly below 6.0, and penetration was hampered when the potassium influx was abolished. Overall, our study provides real-time visualization of GERV entry into host cells and demonstrates the importance of late endosomal maturation in facilitating OBV penetration."}],"publication_status":"published","date_published":"2022-03-01T00:00:00Z","status":"public"},{"department":[{"_id":"GradSch"},{"_id":"LaEr"}],"publication_identifier":{"eissn":["2050-5094"]},"acknowledgement":"J.H. acknowledges partial financial support by the ERC Advanced Grant ‘RMTBeyond’ No. 101020331. Support for publication costs from the Deutsche Forschungsgemeinschaft and the Open Access Publishing Fund of the University of Tübingen is gratefully acknowledged.","date_created":"2022-01-18T16:18:51Z","article_processing_charge":"Yes","year":"2022","project":[{"grant_number":"101020331","call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"publication":"Forum of Mathematics, Sigma","article_type":"original","title":"Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk","external_id":{"arxiv":["2012.15239"],"isi":["000743615000001"]},"volume":10,"type":"journal_article","isi":1,"publisher":"Cambridge University Press","intvolume":"        10","author":[{"full_name":"Henheik, Sven Joscha","last_name":"Henheik","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","orcid":"0000-0003-1106-327X","first_name":"Sven Joscha"},{"last_name":"Teufel","first_name":"Stefan","full_name":"Teufel, Stefan"}],"file_date_updated":"2022-01-19T09:27:43Z","_id":"10643","citation":{"ama":"Henheik SJ, Teufel S. Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk. <i>Forum of Mathematics, Sigma</i>. 2022;10. doi:<a href=\"https://doi.org/10.1017/fms.2021.80\">10.1017/fms.2021.80</a>","ieee":"S. J. Henheik and S. Teufel, “Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk,” <i>Forum of Mathematics, Sigma</i>, vol. 10. Cambridge University Press, 2022.","ista":"Henheik SJ, Teufel S. 2022. Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk. Forum of Mathematics, Sigma. 10, e4.","mla":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Gap in the Bulk.” <i>Forum of Mathematics, Sigma</i>, vol. 10, e4, Cambridge University Press, 2022, doi:<a href=\"https://doi.org/10.1017/fms.2021.80\">10.1017/fms.2021.80</a>.","chicago":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Gap in the Bulk.” <i>Forum of Mathematics, Sigma</i>. Cambridge University Press, 2022. <a href=\"https://doi.org/10.1017/fms.2021.80\">https://doi.org/10.1017/fms.2021.80</a>.","apa":"Henheik, S. J., &#38; Teufel, S. (2022). Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk. <i>Forum of Mathematics, Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2021.80\">https://doi.org/10.1017/fms.2021.80</a>","short":"S.J. Henheik, S. Teufel, Forum of Mathematics, Sigma 10 (2022)."},"keyword":["computational mathematics","discrete mathematics and combinatorics","geometry and topology","mathematical physics","statistics and probability","algebra and number theory","theoretical computer science","analysis"],"has_accepted_license":"1","scopus_import":"1","quality_controlled":"1","article_number":"e4","doi":"10.1017/fms.2021.80","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"01","status":"public","date_published":"2022-01-18T00:00:00Z","abstract":[{"text":"We prove a generalised super-adiabatic theorem for extended fermionic systems assuming a spectral gap only in the bulk. More precisely, we assume that the infinite system has a unique ground state and that the corresponding Gelfand–Naimark–Segal Hamiltonian has a spectral gap above its eigenvalue zero. Moreover, we show that a similar adiabatic theorem also holds in the bulk of finite systems up to errors that vanish faster than any inverse power of the system size, although the corresponding finite-volume Hamiltonians need not have a spectral gap.\r\n\r\n","lang":"eng"}],"publication_status":"published","ddc":["510"],"file":[{"checksum":"87592a755adcef22ea590a99dc728dd3","file_id":"10646","date_created":"2022-01-19T09:27:43Z","file_size":705323,"file_name":"2022_ForumMathSigma_Henheik.pdf","success":1,"access_level":"open_access","creator":"cchlebak","date_updated":"2022-01-19T09:27:43Z","relation":"main_file","content_type":"application/pdf"}],"corr_author":"1","day":"18","language":[{"iso":"eng"}],"oa":1,"ec_funded":1,"arxiv":1,"date_updated":"2025-04-14T07:57:17Z","oa_version":"Published Version"},{"publication_identifier":{"issn":["2643-1564"]},"article_processing_charge":"Yes (via OA deal)","acknowledgement":"O.H. is supported by Institute of Science and Technology Austria. The author thanks Jess Riedel for discussions.","date_created":"2022-01-23T23:01:27Z","department":[{"_id":"OnHo"}],"publication":"Physical Review Research","year":"2022","volume":4,"title":"Constraints on probing quantum coherence to infer gravitational entanglement","article_type":"original","publisher":"American Physical Society","intvolume":"         4","type":"journal_article","citation":{"ieee":"O. Hosten, “Constraints on probing quantum coherence to infer gravitational entanglement,” <i>Physical Review Research</i>, vol. 4, no. 1. American Physical Society, 2022.","ista":"Hosten O. 2022. Constraints on probing quantum coherence to infer gravitational entanglement. Physical Review Research. 4(1), 013023.","mla":"Hosten, Onur. “Constraints on Probing Quantum Coherence to Infer Gravitational Entanglement.” <i>Physical Review Research</i>, vol. 4, no. 1, 013023, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">10.1103/PhysRevResearch.4.013023</a>.","ama":"Hosten O. Constraints on probing quantum coherence to infer gravitational entanglement. <i>Physical Review Research</i>. 2022;4(1). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">10.1103/PhysRevResearch.4.013023</a>","apa":"Hosten, O. (2022). Constraints on probing quantum coherence to infer gravitational entanglement. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">https://doi.org/10.1103/PhysRevResearch.4.013023</a>","short":"O. Hosten, Physical Review Research 4 (2022).","chicago":"Hosten, Onur. “Constraints on Probing Quantum Coherence to Infer Gravitational Entanglement.” <i>Physical Review Research</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">https://doi.org/10.1103/PhysRevResearch.4.013023</a>."},"article_number":"013023","scopus_import":"1","quality_controlled":"1","has_accepted_license":"1","_id":"10652","file_date_updated":"2022-01-24T11:12:44Z","author":[{"last_name":"Hosten","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2031-204X","first_name":"Onur","full_name":"Hosten, Onur"}],"month":"01","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1103/PhysRevResearch.4.013023","ddc":["530"],"publication_status":"published","abstract":[{"lang":"eng","text":"Finding a feasible scheme for testing the quantum mechanical nature of the gravitational interaction has been attracting an increasing level of attention. Gravity mediated entanglement generation so far appears to be the key ingredient for a potential experiment. In a recent proposal [D. Carney et al., PRX Quantum 2, 030330 (2021)] combining an atom interferometer with a low-frequency mechanical oscillator, a coherence revival test is proposed for verifying this entanglement generation. With measurements performed only on the atoms, this protocol bypasses the need for correlation measurements. Here, we explore formulations of such a protocol, and specifically find that in the envisioned regime of operation with high thermal excitation, semiclassical models, where there is no concept of entanglement, also give the same experimental signatures. We elucidate in a fully quantum mechanical calculation that entanglement is not the source of the revivals in the relevant parameter regime. We argue that, in its current form, the suggested test is only relevant if the oscillator is nearly in a pure quantum state, and in this regime the effects are too small to be measurable. We further discuss potential open ends. The results highlight the importance and subtleties of explicitly considering how the quantum case differs from the classical expectations when testing for the quantum mechanical nature of a physical system."}],"status":"public","date_published":"2022-01-10T00:00:00Z","day":"10","file":[{"content_type":"application/pdf","relation":"main_file","creator":"cchlebak","access_level":"open_access","date_updated":"2022-01-24T11:12:44Z","success":1,"file_size":236329,"file_name":"2022_PhysRevResearch_Hosten.pdf","checksum":"7254d267a0633ca5d63131d345e58686","date_created":"2022-01-24T11:12:44Z","file_id":"10660"}],"corr_author":"1","oa_version":"Published Version","date_updated":"2024-10-09T21:01:26Z","issue":"1","language":[{"iso":"eng"}],"oa":1},{"day":"16","file":[{"success":1,"file_size":1117408,"file_name":"2022_GeophysResearchLet_Abramian.pdf","date_created":"2022-01-24T12:14:41Z","file_id":"10662","checksum":"08f88b57b8e409b42e382452cd5f297b","content_type":"application/pdf","relation":"main_file","date_updated":"2022-01-24T12:14:41Z","creator":"cchlebak","access_level":"open_access"}],"issue":"1","oa_version":"Published Version","date_updated":"2025-04-14T07:58:00Z","ec_funded":1,"oa":1,"language":[{"iso":"eng"}],"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"01","doi":"10.1029/2021GL095184","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"lang":"eng","text":"Squall lines are known to be the consequence of the interaction of low-level shear with cold pools associated with convective downdrafts. Also, as the magnitude of the shear increases beyond a critical shear, squall lines tend to orient themselves. The existing literature suggests that this orientation reduces incoming wind shear to the squall line, and maintains equilibrium between wind shear and cold pool spreading. Although this theory is widely accepted, very few quantitative studies have been conducted on supercritical regime especially. Here, we test this hypothesis with tropical squall lines obtained by imposing a vertical wind shear in cloud resolving simulations in radiative convective equilibrium. In the sub-critical regime, squall lines are perpendicular to the shear. In the super-critical regime, their orientation maintain the equilibrium, supporting existing theories. We also find that as shear increases, cold pools become more intense. However, this intensification has little impact on squall line orientation."}],"ddc":["550"],"date_published":"2022-01-16T00:00:00Z","status":"public","intvolume":"        49","publisher":"Wiley","type":"journal_article","isi":1,"has_accepted_license":"1","article_number":"e2021GL095184","scopus_import":"1","quality_controlled":"1","citation":{"chicago":"Abramian, Sophie, Caroline J Muller, and Camille Risi. “Shear-Convection Interactions and Orientation of Tropical Squall Lines.” <i>Geophysical Research Letters</i>. Wiley, 2022. <a href=\"https://doi.org/10.1029/2021GL095184\">https://doi.org/10.1029/2021GL095184</a>.","short":"S. Abramian, C.J. Muller, C. Risi, Geophysical Research Letters 49 (2022).","apa":"Abramian, S., Muller, C. J., &#38; Risi, C. (2022). Shear-convection interactions and orientation of tropical squall lines. <i>Geophysical Research Letters</i>. Wiley. <a href=\"https://doi.org/10.1029/2021GL095184\">https://doi.org/10.1029/2021GL095184</a>","ama":"Abramian S, Muller CJ, Risi C. Shear-convection interactions and orientation of tropical squall lines. <i>Geophysical Research Letters</i>. 2022;49(1). doi:<a href=\"https://doi.org/10.1029/2021GL095184\">10.1029/2021GL095184</a>","ista":"Abramian S, Muller CJ, Risi C. 2022. Shear-convection interactions and orientation of tropical squall lines. Geophysical Research Letters. 49(1), e2021GL095184.","mla":"Abramian, Sophie, et al. “Shear-Convection Interactions and Orientation of Tropical Squall Lines.” <i>Geophysical Research Letters</i>, vol. 49, no. 1, e2021GL095184, Wiley, 2022, doi:<a href=\"https://doi.org/10.1029/2021GL095184\">10.1029/2021GL095184</a>.","ieee":"S. Abramian, C. J. Muller, and C. Risi, “Shear-convection interactions and orientation of tropical squall lines,” <i>Geophysical Research Letters</i>, vol. 49, no. 1. Wiley, 2022."},"author":[{"full_name":"Abramian, Sophie","first_name":"Sophie","last_name":"Abramian"},{"full_name":"Muller, Caroline J","orcid":"0000-0001-5836-5350","last_name":"Muller","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","first_name":"Caroline J"},{"last_name":"Risi","first_name":"Camille","full_name":"Risi, Camille"}],"_id":"10653","file_date_updated":"2022-01-24T12:14:41Z","date_created":"2022-01-23T23:01:27Z","acknowledgement":"The authors gratefully acknowledge funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041), and from the PhD fellowship of Ecole Normale Supérieure de Paris-Saclay. Two supplementary movies are also provided showing the angle detection method and the squall line of the Usfc = 10 m s−1 simulation.","article_processing_charge":"No","publication_identifier":{"eissn":["1944-8007"],"issn":["0094-8276"]},"department":[{"_id":"CaMu"}],"related_material":{"link":[{"url":"https://doi.org/10.1002/essoar.10507697.1","relation":"earlier_version"}]},"title":"Shear-convection interactions and orientation of tropical squall lines","article_type":"original","external_id":{"pmid":["35865077"],"isi":["000743989800040"]},"volume":49,"year":"2022","project":[{"grant_number":"805041","call_identifier":"H2020","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576"}],"publication":"Geophysical Research Letters"},{"volume":128,"title":"Phase transition to turbulence in spatially extended shear flows","article_type":"original","external_id":{"arxiv":["2111.14894"],"isi":["000748271700010"],"pmid":["35061458"]},"publication":"Physical Review Letters","project":[{"grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FP7","grant_number":"306589","_id":"25152F3A-B435-11E9-9278-68D0E5697425","name":"Decoding the complexity of turbulence at its origin"},{"grant_number":"662960","_id":"238598C6-32DE-11EA-91FC-C7463DDC885E","name":"Revisiting the Turbulence Problem Using Statistical Mechanics"}],"year":"2022","department":[{"_id":"BjHo"}],"article_processing_charge":"No","acknowledgement":"We thank T.Menner, T.Asenov, P. Maier and the Miba machine shop of IST Austria for their valuable support in all technical aspects. We thank Marc Avila for comments on the manuscript. This work was supported by a grant from the Simons Foundation (662960, B.H.). We acknowledge the European Research Council under the European Union’s Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement 306589 for financial support. K.A.\r\nacknowledges funding from the Central Research Development Fund of the University of Bremen, grant number ZF04B /2019/FB04 Avila Kerstin (”Independent Project for Postdocs”). L.K. was supported by the European Union’s Horizon 2020 Research and innovation programme under the Marie Sklodowska-Curie grant agreement  No. 754411.\r\n","date_created":"2022-01-23T23:01:28Z","publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"acknowledged_ssus":[{"_id":"M-Shop"}],"_id":"10654","author":[{"full_name":"Klotz, Lukasz","orcid":"0000-0003-1740-7635","id":"2C9AF1C2-F248-11E8-B48F-1D18A9856A87","last_name":"Klotz","first_name":"Lukasz"},{"id":"4787FE80-F248-11E8-B48F-1D18A9856A87","last_name":"Lemoult","first_name":"Grégoire M","full_name":"Lemoult, Grégoire M"},{"last_name":"Avila","first_name":"Kerstin","full_name":"Avila, Kerstin"},{"full_name":"Hof, Björn","orcid":"0000-0003-2057-2754","id":"3A374330-F248-11E8-B48F-1D18A9856A87","last_name":"Hof","first_name":"Björn"}],"quality_controlled":"1","article_number":"014502","scopus_import":"1","citation":{"chicago":"Klotz, Lukasz, Grégoire M Lemoult, Kerstin Avila, and Björn Hof. “Phase Transition to Turbulence in Spatially Extended Shear Flows.” <i>Physical Review Letters</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">https://doi.org/10.1103/PhysRevLett.128.014502</a>.","short":"L. Klotz, G.M. Lemoult, K. Avila, B. Hof, Physical Review Letters 128 (2022).","apa":"Klotz, L., Lemoult, G. M., Avila, K., &#38; Hof, B. (2022). Phase transition to turbulence in spatially extended shear flows. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">https://doi.org/10.1103/PhysRevLett.128.014502</a>","ama":"Klotz L, Lemoult GM, Avila K, Hof B. Phase transition to turbulence in spatially extended shear flows. <i>Physical Review Letters</i>. 2022;128(1). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">10.1103/PhysRevLett.128.014502</a>","mla":"Klotz, Lukasz, et al. “Phase Transition to Turbulence in Spatially Extended Shear Flows.” <i>Physical Review Letters</i>, vol. 128, no. 1, 014502, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">10.1103/PhysRevLett.128.014502</a>.","ista":"Klotz L, Lemoult GM, Avila K, Hof B. 2022. Phase transition to turbulence in spatially extended shear flows. Physical Review Letters. 128(1), 014502.","ieee":"L. Klotz, G. M. Lemoult, K. Avila, and B. Hof, “Phase transition to turbulence in spatially extended shear flows,” <i>Physical Review Letters</i>, vol. 128, no. 1. American Physical Society, 2022."},"isi":1,"type":"journal_article","intvolume":"       128","publisher":"American Physical Society","date_published":"2022-01-05T00:00:00Z","status":"public","publication_status":"published","abstract":[{"text":"Directed percolation (DP) has recently emerged as a possible solution to the century old puzzle surrounding the transition to turbulence. Multiple model studies reported DP exponents, however, experimental evidence is limited since the largest possible observation times are orders of magnitude shorter than the flows’ characteristic timescales. An exception is cylindrical Couette flow where the limit is not temporal, but rather the realizable system size. We present experiments in a Couette setup of unprecedented azimuthal and axial aspect ratios. Approaching the critical point to within less than 0.1% we determine five critical exponents, all of which are in excellent agreement with the 2+1D DP universality class. The complex dynamics encountered at \r\nthe onset of turbulence can hence be fully rationalized within the framework of statistical mechanics.","lang":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1103/PhysRevLett.128.014502","pmid":1,"month":"01","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2111.14894"}],"ec_funded":1,"oa":1,"language":[{"iso":"eng"}],"oa_version":"Preprint","date_updated":"2024-10-22T11:08:41Z","issue":"1","arxiv":1,"corr_author":"1","day":"05"},{"intvolume":"        54","publisher":"Annual Reviews","type":"journal_article","isi":1,"scopus_import":"1","quality_controlled":"1","citation":{"apa":"Muller, C. J., Yang, D., Craig, G., Cronin, T., Fildier, B., Haerter, J. O., … Sherwood, S. C. (2022). Spontaneous aggregation of convective storms. <i>Annual Review of Fluid Mechanics</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev-fluid-022421-011319\">https://doi.org/10.1146/annurev-fluid-022421-011319</a>","short":"C.J. Muller, D. Yang, G. Craig, T. Cronin, B. Fildier, J.O. Haerter, C. Hohenegger, B. Mapes, D. Randall, S. Shamekh, S.C. Sherwood, Annual Review of Fluid Mechanics 54 (2022) 133–157.","chicago":"Muller, Caroline J, Da Yang, George Craig, Timothy Cronin, Benjamin Fildier, Jan O. Haerter, Cathy Hohenegger, et al. “Spontaneous Aggregation of Convective Storms.” <i>Annual Review of Fluid Mechanics</i>. Annual Reviews, 2022. <a href=\"https://doi.org/10.1146/annurev-fluid-022421-011319\">https://doi.org/10.1146/annurev-fluid-022421-011319</a>.","mla":"Muller, Caroline J., et al. “Spontaneous Aggregation of Convective Storms.” <i>Annual Review of Fluid Mechanics</i>, vol. 54, Annual Reviews, 2022, pp. 133–57, doi:<a href=\"https://doi.org/10.1146/annurev-fluid-022421-011319\">10.1146/annurev-fluid-022421-011319</a>.","ista":"Muller CJ, Yang D, Craig G, Cronin T, Fildier B, Haerter JO, Hohenegger C, Mapes B, Randall D, Shamekh S, Sherwood SC. 2022. Spontaneous aggregation of convective storms. Annual Review of Fluid Mechanics. 54, 133–157.","ieee":"C. J. Muller <i>et al.</i>, “Spontaneous aggregation of convective storms,” <i>Annual Review of Fluid Mechanics</i>, vol. 54. Annual Reviews, pp. 133–157, 2022.","ama":"Muller CJ, Yang D, Craig G, et al. Spontaneous aggregation of convective storms. <i>Annual Review of Fluid Mechanics</i>. 2022;54:133-157. doi:<a href=\"https://doi.org/10.1146/annurev-fluid-022421-011319\">10.1146/annurev-fluid-022421-011319</a>"},"author":[{"orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller","first_name":"Caroline J","full_name":"Muller, Caroline J"},{"last_name":"Yang","first_name":"Da","full_name":"Yang, Da"},{"full_name":"Craig, George","last_name":"Craig","first_name":"George"},{"first_name":"Timothy","last_name":"Cronin","full_name":"Cronin, Timothy"},{"first_name":"Benjamin","last_name":"Fildier","full_name":"Fildier, Benjamin"},{"full_name":"Haerter, Jan O.","last_name":"Haerter","first_name":"Jan O."},{"full_name":"Hohenegger, Cathy","first_name":"Cathy","last_name":"Hohenegger"},{"first_name":"Brian","last_name":"Mapes","full_name":"Mapes, Brian"},{"full_name":"Randall, David","first_name":"David","last_name":"Randall"},{"last_name":"Shamekh","first_name":"Sara","full_name":"Shamekh, Sara"},{"last_name":"Sherwood","first_name":"Steven C.","full_name":"Sherwood, Steven C."}],"_id":"10656","date_created":"2022-01-23T23:01:29Z","acknowledgement":"C.M. gratefully acknowledges funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, grant agreement 805041). She also thanks Grand Équipement National de Calcul Intensif (GENCI), France, for providing access to their computing platforms at Très Grand Centre de Calcul (TGCC). J.O.H. gratefully acknowledges funding from the Villum Foundation (grant 13168), the ERC under the Horizon 2020 research and innovation program (grant 771859), and the Novo Nordisk Foundation's Interdisciplinary Synergy Program (grant NNF19OC0057374). G.C. gratefully acknowledges the support of the transregional collaborative research center (SFB/TRR 165) “Waves to Weather” (http://www.wavestoweather.de) funded by the German Research Foundation (DFG). D.Y. is supported by a Packard Fellowship in Science and Engineering, the France–Berkeley Fund, Laboratory Directed Research and Development (LDRD) funding from the Lawrence Berkeley National Laboratory, and the US Department of Energy, Office of Science, Office of Biological and Environmental Research, Climate and Environmental Sciences Division, Regional and Global Climate Modeling Program under award DE-AC02-05CH11231.","article_processing_charge":"No","publication_identifier":{"issn":["0066-4189"],"eissn":["1545-4479"]},"department":[{"_id":"CaMu"}],"page":"133-157","external_id":{"isi":["000794152800006"]},"title":"Spontaneous aggregation of convective storms","article_type":"original","volume":54,"year":"2022","publication":"Annual Review of Fluid Mechanics","project":[{"_id":"629205d8-2b32-11ec-9570-e1356ff73576","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","call_identifier":"H2020","grant_number":"805041"}],"day":"01","corr_author":"1","oa_version":"Published Version","date_updated":"2024-11-05T09:00:40Z","language":[{"iso":"eng"}],"ec_funded":1,"oa":1,"month":"01","main_file_link":[{"url":"https://doi.org/10.1146/annurev-fluid-022421-011319","open_access":"1"}],"doi":"10.1146/annurev-fluid-022421-011319","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Idealized simulations of the tropical atmosphere have predicted that clouds can spontaneously clump together in space, despite perfectly homogeneous settings. This phenomenon has been called self-aggregation, and it results in a state where a moist cloudy region with intense deep convective storms is surrounded by extremely dry subsiding air devoid of deep clouds. We review here the main findings from theoretical work and idealized models of this phenomenon, highlighting the physical processes believed to play a key role in convective self-aggregation. We also review the growing literature on the importance and implications of this phenomenon for the tropical atmosphere, notably, for the hydrological cycle and for precipitation extremes, in our current and in a warming climate."}],"publication_status":"published","date_published":"2022-01-01T00:00:00Z","status":"public"},{"citation":{"ama":"McCartney DL, Hillary RF, Conole ELS, et al. Blood-based epigenome-wide analyses of cognitive abilities. <i>Genome Biology</i>. 2022;23(1). doi:<a href=\"https://doi.org/10.1186/s13059-021-02596-5\">10.1186/s13059-021-02596-5</a>","ista":"McCartney DL, Hillary RF, Conole ELS, Banos DT, Gadd DA, Walker RM, Nangle C, Flaig R, Campbell A, Murray AD, Maniega SM, Valdés-Hernández MDC, Harris MA, Bastin ME, Wardlaw JM, Harris SE, Porteous DJ, Tucker-Drob EM, McIntosh AM, Evans KL, Deary IJ, Cox SR, Robinson MR, Marioni RE. 2022. Blood-based epigenome-wide analyses of cognitive abilities. Genome Biology. 23(1), 26.","mla":"McCartney, Daniel L., et al. “Blood-Based Epigenome-Wide Analyses of Cognitive Abilities.” <i>Genome Biology</i>, vol. 23, no. 1, 26, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1186/s13059-021-02596-5\">10.1186/s13059-021-02596-5</a>.","ieee":"D. L. McCartney <i>et al.</i>, “Blood-based epigenome-wide analyses of cognitive abilities,” <i>Genome Biology</i>, vol. 23, no. 1. Springer Nature, 2022.","chicago":"McCartney, Daniel L., Robert F. Hillary, Eleanor L.S. Conole, Daniel Trejo Banos, Danni A. Gadd, Rosie M. Walker, Cliff Nangle, et al. “Blood-Based Epigenome-Wide Analyses of Cognitive Abilities.” <i>Genome Biology</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1186/s13059-021-02596-5\">https://doi.org/10.1186/s13059-021-02596-5</a>.","apa":"McCartney, D. L., Hillary, R. F., Conole, E. L. S., Banos, D. T., Gadd, D. A., Walker, R. M., … Marioni, R. E. (2022). Blood-based epigenome-wide analyses of cognitive abilities. <i>Genome Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1186/s13059-021-02596-5\">https://doi.org/10.1186/s13059-021-02596-5</a>","short":"D.L. McCartney, R.F. Hillary, E.L.S. Conole, D.T. Banos, D.A. Gadd, R.M. Walker, C. Nangle, R. Flaig, A. Campbell, A.D. Murray, S.M. Maniega, M.D.C. Valdés-Hernández, M.A. Harris, M.E. Bastin, J.M. Wardlaw, S.E. Harris, D.J. Porteous, E.M. Tucker-Drob, A.M. McIntosh, K.L. Evans, I.J. Deary, S.R. Cox, M.R. Robinson, R.E. Marioni, Genome Biology 23 (2022)."},"has_accepted_license":"1","article_number":"26","scopus_import":"1","quality_controlled":"1","author":[{"first_name":"Daniel L.","last_name":"McCartney","full_name":"McCartney, Daniel L."},{"full_name":"Hillary, Robert F.","first_name":"Robert F.","last_name":"Hillary"},{"full_name":"Conole, Eleanor L.S.","first_name":"Eleanor L.S.","last_name":"Conole"},{"first_name":"Daniel Trejo","last_name":"Banos","full_name":"Banos, Daniel Trejo"},{"first_name":"Danni A.","last_name":"Gadd","full_name":"Gadd, Danni A."},{"full_name":"Walker, Rosie M.","first_name":"Rosie M.","last_name":"Walker"},{"first_name":"Cliff","last_name":"Nangle","full_name":"Nangle, Cliff"},{"full_name":"Flaig, Robin","first_name":"Robin","last_name":"Flaig"},{"last_name":"Campbell","first_name":"Archie","full_name":"Campbell, Archie"},{"first_name":"Alison D.","last_name":"Murray","full_name":"Murray, Alison D."},{"last_name":"Maniega","first_name":"Susana Muñoz","full_name":"Maniega, Susana Muñoz"},{"full_name":"Valdés-Hernández, María Del C.","first_name":"María Del C.","last_name":"Valdés-Hernández"},{"last_name":"Harris","first_name":"Mathew A.","full_name":"Harris, Mathew A."},{"first_name":"Mark E.","last_name":"Bastin","full_name":"Bastin, Mark E."},{"full_name":"Wardlaw, Joanna M.","last_name":"Wardlaw","first_name":"Joanna M."},{"last_name":"Harris","first_name":"Sarah E.","full_name":"Harris, Sarah E."},{"first_name":"David J.","last_name":"Porteous","full_name":"Porteous, David J."},{"first_name":"Elliot M.","last_name":"Tucker-Drob","full_name":"Tucker-Drob, Elliot M."},{"full_name":"McIntosh, Andrew M.","last_name":"McIntosh","first_name":"Andrew M."},{"last_name":"Evans","first_name":"Kathryn L.","full_name":"Evans, Kathryn L."},{"last_name":"Deary","first_name":"Ian J.","full_name":"Deary, Ian J."},{"first_name":"Simon R.","last_name":"Cox","full_name":"Cox, Simon R."},{"full_name":"Robinson, Matthew Richard","first_name":"Matthew Richard","orcid":"0000-0001-8982-8813","last_name":"Robinson","id":"E5D42276-F5DA-11E9-8E24-6303E6697425"},{"first_name":"Riccardo E.","last_name":"Marioni","full_name":"Marioni, Riccardo E."}],"file_date_updated":"2022-01-31T13:16:05Z","_id":"10702","publisher":"Springer Nature","intvolume":"        23","type":"journal_article","isi":1,"related_material":{"link":[{"relation":"earlier_version","url":"https://doi.org/10.1101/2021.05.24.21257698"}],"record":[{"relation":"research_data","status":"public","id":"13072"}]},"year":"2022","publication":"Genome Biology","project":[{"grant_number":"PCEGP3_181181","name":"Improving estimation and prediction of common complex disease risk","_id":"9B8D11D6-BA93-11EA-9121-9846C619BF3A"}],"article_type":"original","title":"Blood-based epigenome-wide analyses of cognitive abilities","external_id":{"pmid":["35039062"],"isi":["000744358300002"]},"volume":23,"publication_identifier":{"issn":["1474-7596"],"eissn":["1474-760X"]},"date_created":"2022-01-30T23:01:33Z","acknowledgement":"GS received core support from the Chief Scientist Office of the Scottish Government Health Directorates (CZD/16/6) and the Scottish Funding Council (HR03006). Genotyping and DNA methylation profiling of the GS samples was carried out by the Genetics Core Laboratory at the Edinburgh Clinical Research Facility, Edinburgh, Scotland, and was funded by the Medical Research Council UK and the Wellcome Trust (Wellcome Trust Strategic Award STratifying Resilience and Depression Longitudinally (STRADL; Reference 104036/Z/14/Z). The DNA methylation data assayed for Generation Scotland was partially funded by a 2018 NARSAD Young Investigator Grant from the Brain & Behavior Research Foundation (Ref: 27404; awardee: Dr David M Howard) and by a JMAS SIM fellowship from the Royal College of Physicians of Edinburgh (Awardee: Dr Heather C Whalley). LBC1936 MRI brain imaging was supported by Medical Research Council (MRC) grants [G0701120], [G1001245], [MR/M013111/1] and [MR/R024065/1]. Magnetic resonance image acquisition and analyses were conducted at the Brain Research Imaging Centre, Neuroimaging Sciences, University of Edinburgh (www.bric.ed.ac.uk) which is part of SINAPSE (Scottish Imaging Network: A Platform for Scientific Excellence) collaboration (www.sinapse.ac.uk) funded by the Scottish Funding Council and the Chief Scientist Office. This work was supported by the European Union Horizon 2020 (PHC.03.15, project No 666881), SVDs@Target, the Fondation Leducq Transatlantic Network of Excellence for the Study of Perivascular Spaces in Small Vessel Disease [ref no. 16 CVD 05]. We thank the LBC1936 participants and team members who contributed to these studies. The LBC1936 is supported by Age UK (Disconnected Mind project, which supports S.E.H.), the Medical Research Council (G0701120, G1001245, MR/M013111/1, MR/R024065/1) and the University of Edinburgh. Methylation typing of LBC1936 was supported by the Centre for Cognitive Ageing and Cognitive Epidemiology (Pilot Fund award), Age UK, The Wellcome Trust Institutional Strategic Support Fund, The University of Edinburgh, and The University of Queensland. Genotyping was funded by the Biotechnology and Biological Sciences Research Council (BB/F019394/1). Proteomic analyses in LBC1936 were supported by the Age UK grant and NIH Grants R01AG054628 and R01AG05462802S1. M.V.H. is funded by the Row Fogo Charitable Trust (Grant no. BROD.FID3668413). J.M.W is supported by the UK Dementia Research Institute which receives its funding from DRI Ltd, funded by the UK Medical Research Council, Alzheimers Society and Alzheimers Research UK. R.F.H., E.L.S.C and D.A.G. are supported by funding from the Wellcome Trust 4 year PhD in Translational Neuroscience: training the next generation of basic neuroscientists to embrace clinical research [108890/Z/15/Z]. E.M.T.D. was supported by the National Institutes of Health (NIH) grants R01AG054628, R01MH120219, R01HD083613, P2CHD042849 and P30AG066614. S.R.C. was also supported by a National Institutes of Health (NIH) research grant R01AG054628 and is supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant Number 221890/Z/20/Z). D.L.Mc.C. and R.E.M. are supported by Alzheimers Research UK major project grant ARUK/PG2017B/10. R.E.M. is supported by Alzheimer’s Society major project grant AS-PG-19b-010. This research was funded in whole, or in part, by Wellcome [104036/Z/14/Z and 108890/Z/15/Z]. For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission.","article_processing_charge":"No","department":[{"_id":"MaRo"}],"issue":"1","oa_version":"Published Version","date_updated":"2025-06-11T13:54:53Z","oa":1,"language":[{"iso":"eng"}],"day":"17","file":[{"relation":"main_file","content_type":"application/pdf","access_level":"open_access","creator":"cchlebak","date_updated":"2022-01-31T13:16:05Z","file_name":"2022_GenomeBio_McCartney.pdf","file_size":1540606,"success":1,"checksum":"34f10bb2b0594189dcac24d13b691d52","file_id":"10708","date_created":"2022-01-31T13:16:05Z"}],"corr_author":"1","publication_status":"published","abstract":[{"lang":"eng","text":"Background: Blood-based markers of cognitive functioning might provide an accessible way to track neurodegeneration years prior to clinical manifestation of cognitive impairment and dementia. Results: Using blood-based epigenome-wide analyses of general cognitive function, we show that individual differences in DNA methylation (DNAm) explain 35.0% of the variance in general cognitive function (g). A DNAm predictor explains ~4% of the variance, independently of a polygenic score, in two external cohorts. It also associates with circulating levels of neurology- and inflammation-related proteins, global brain imaging metrics, and regional cortical volumes. Conclusions: As sample sizes increase, the ability to assess cognitive function from DNAm data may be informative in settings where cognitive testing is unreliable or unavailable."}],"ddc":["570"],"status":"public","date_published":"2022-01-17T00:00:00Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"01","doi":"10.1186/s13059-021-02596-5","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"author":[{"last_name":"Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9582-2634","first_name":"Tamás","full_name":"Hausel, Tamás"},{"first_name":"Nigel","last_name":"Hitchin","full_name":"Hitchin, Nigel"}],"file_date_updated":"2023-02-27T07:30:47Z","_id":"10704","citation":{"mla":"Hausel, Tamás, and Nigel Hitchin. “Very Stable Higgs Bundles, Equivariant Multiplicity and Mirror Symmetry.” <i>Inventiones Mathematicae</i>, vol. 228, Springer Nature, 2022, pp. 893–989, doi:<a href=\"https://doi.org/10.1007/s00222-021-01093-7\">10.1007/s00222-021-01093-7</a>.","ieee":"T. Hausel and N. Hitchin, “Very stable Higgs bundles, equivariant multiplicity and mirror symmetry,” <i>Inventiones Mathematicae</i>, vol. 228. Springer Nature, pp. 893–989, 2022.","ista":"Hausel T, Hitchin N. 2022. Very stable Higgs bundles, equivariant multiplicity and mirror symmetry. Inventiones Mathematicae. 228, 893–989.","ama":"Hausel T, Hitchin N. Very stable Higgs bundles, equivariant multiplicity and mirror symmetry. <i>Inventiones Mathematicae</i>. 2022;228:893-989. doi:<a href=\"https://doi.org/10.1007/s00222-021-01093-7\">10.1007/s00222-021-01093-7</a>","apa":"Hausel, T., &#38; Hitchin, N. (2022). Very stable Higgs bundles, equivariant multiplicity and mirror symmetry. <i>Inventiones Mathematicae</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00222-021-01093-7\">https://doi.org/10.1007/s00222-021-01093-7</a>","short":"T. Hausel, N. Hitchin, Inventiones Mathematicae 228 (2022) 893–989.","chicago":"Hausel, Tamás, and Nigel Hitchin. “Very Stable Higgs Bundles, Equivariant Multiplicity and Mirror Symmetry.” <i>Inventiones Mathematicae</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00222-021-01093-7\">https://doi.org/10.1007/s00222-021-01093-7</a>."},"has_accepted_license":"1","scopus_import":"1","quality_controlled":"1","type":"journal_article","isi":1,"publisher":"Springer Nature","intvolume":"       228","year":"2022","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publication":"Inventiones Mathematicae","external_id":{"isi":["000745495400001"],"arxiv":["2101.08583"]},"article_type":"original","title":"Very stable Higgs bundles, equivariant multiplicity and mirror symmetry","volume":228,"related_material":{"link":[{"relation":"press_release","url":"https://ista.ac.at/en/news/the-tip-of-the-mathematical-iceberg/","description":"News on the ISTA Website"}]},"page":"893-989","department":[{"_id":"TaHa"}],"publication_identifier":{"issn":["0020-9910"],"eissn":["1432-1297"]},"date_created":"2022-01-30T23:01:34Z","acknowledgement":"We would like to thank Brian Collier, Davide Gaiotto, Peter Gothen, Jochen Heinloth, Daniel Huybrechts, Quoc Ho, Joel Kamnitzer, Gérard Laumon, Luca Migliorini, Alexander Minets, Brent Pym, Peng Shan, Carlos Simpson, András Szenes, Fernando R. Villegas, Richard Wentworth, Edward Witten and Kōta Yoshioka for interesting comments and discussions. Most of all we are grateful for a long list of very helpful comments by the referee. We would also like to thank the organizers of the Summer School on Higgs bundles in Hamburg in September 2018, where the authors and Richard Wentworth were giving lectures and where the work in this paper started by considering the mirror of the Lagrangian upward flows W+E investigated in [17]. The second author wishes to thank EPSRC and ICMAT for support. Open access funding provided by Institute of Science and Technology (IST Austria).","article_processing_charge":"Yes (via OA deal)","oa":1,"language":[{"iso":"eng"}],"arxiv":1,"date_updated":"2025-04-15T06:53:08Z","oa_version":"Published Version","file":[{"success":1,"file_name":"2022_InventionesMahtematicae_Hausel.pdf","file_size":1069538,"checksum":"a382ba75acebc9adfb8fe56247cb410e","date_created":"2023-02-27T07:30:47Z","file_id":"12687","content_type":"application/pdf","relation":"main_file","creator":"dernst","access_level":"open_access","date_updated":"2023-02-27T07:30:47Z"}],"corr_author":"1","day":"01","status":"public","date_published":"2022-05-01T00:00:00Z","abstract":[{"text":"We define and study the existence of very stable Higgs bundles on Riemann surfaces, how it implies a precise formula for the multiplicity of the very stable components of the global nilpotent cone and its relationship to mirror symmetry. The main ingredients are the Bialynicki-Birula theory of C∗-actions on semiprojective varieties, C∗ characters of indices of C∗-equivariant coherent sheaves, Hecke transformation for Higgs bundles, relative Fourier–Mukai transform along the Hitchin fibration, hyperholomorphic structures on universal bundles and cominuscule Higgs bundles.","lang":"eng"}],"publication_status":"published","ddc":["510"],"doi":"10.1007/s00222-021-01093-7","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"05"}]