[{"file_date_updated":"2024-04-10T09:18:38Z","_id":"15269","author":[{"last_name":"Daguerre","first_name":"Lucas","full_name":"Daguerre, Lucas"},{"full_name":"Medina Ramos, Raimel A","first_name":"Raimel A","orcid":"0000-0002-5383-2869","id":"CE680B90-D85A-11E9-B684-C920E6697425","last_name":"Medina Ramos"},{"first_name":"Mario","last_name":"Solís","full_name":"Solís, Mario"},{"last_name":"Torroba","first_name":"Gonzalo","full_name":"Torroba, Gonzalo"}],"scopus_import":"1","article_number":"79","quality_controlled":"1","has_accepted_license":"1","keyword":["Nuclear and High Energy Physics"],"citation":{"ieee":"L. Daguerre, R. A. Medina Ramos, M. Solís, and G. Torroba, “Aspects of quantum information in finite density field theory,” <i>Journal of High Energy Physics</i>, vol. 2021, no. 3. Springer Nature, 2021.","mla":"Daguerre, Lucas, et al. “Aspects of Quantum Information in Finite Density Field Theory.” <i>Journal of High Energy Physics</i>, vol. 2021, no. 3, 79, Springer Nature, 2021, doi:<a href=\"https://doi.org/10.1007/jhep03(2021)079\">10.1007/jhep03(2021)079</a>.","ista":"Daguerre L, Medina Ramos RA, Solís M, Torroba G. 2021. Aspects of quantum information in finite density field theory. Journal of High Energy Physics. 2021(3), 79.","ama":"Daguerre L, Medina Ramos RA, Solís M, Torroba G. Aspects of quantum information in finite density field theory. <i>Journal of High Energy Physics</i>. 2021;2021(3). doi:<a href=\"https://doi.org/10.1007/jhep03(2021)079\">10.1007/jhep03(2021)079</a>","short":"L. Daguerre, R.A. Medina Ramos, M. Solís, G. Torroba, Journal of High Energy Physics 2021 (2021).","apa":"Daguerre, L., Medina Ramos, R. A., Solís, M., &#38; Torroba, G. (2021). Aspects of quantum information in finite density field theory. <i>Journal of High Energy Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/jhep03(2021)079\">https://doi.org/10.1007/jhep03(2021)079</a>","chicago":"Daguerre, Lucas, Raimel A Medina Ramos, Mario Solís, and Gonzalo Torroba. “Aspects of Quantum Information in Finite Density Field Theory.” <i>Journal of High Energy Physics</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/jhep03(2021)079\">https://doi.org/10.1007/jhep03(2021)079</a>."},"isi":1,"type":"journal_article","intvolume":"      2021","publisher":"Springer Nature","volume":2021,"title":"Aspects of quantum information in finite density field theory","article_type":"original","external_id":{"arxiv":["2011.01252"],"isi":["000627376600004"]},"publication":"Journal of High Energy Physics","year":"2021","department":[{"_id":"MaSe"}],"article_processing_charge":"Yes","acknowledgement":"We thank H. Casini for many interesting discussions and comments on the manuscript.\r\nLD is supported by CNEA and UNCuyo, Inst. Balseiro. RM is supported by IST Austria.\r\nMS is supported by CONICET and UNCuyo, Inst. Balseiro. GT is supported by CONICET\r\n(PIP grant 11220150100299), ANPCyT (PICT 2018-2517), CNEA, and UNCuyo,\r\nInst. Balseiro.","date_created":"2024-04-03T07:51:06Z","publication_identifier":{"issn":["1029-8479"]},"oa":1,"language":[{"iso":"eng"}],"oa_version":"Published Version","date_updated":"2025-09-10T10:15:02Z","issue":"3","arxiv":1,"corr_author":"1","license":"https://creativecommons.org/licenses/by/4.0/","file":[{"file_size":5389195,"file_name":"2021_JourHighEnergyPhysics_Daguerre.pdf","success":1,"file_id":"15310","date_created":"2024-04-10T09:18:38Z","checksum":"4f540e63988ee87173e02f51a19a6672","relation":"main_file","content_type":"application/pdf","date_updated":"2024-04-10T09:18:38Z","access_level":"open_access","creator":"dernst"}],"day":"08","date_published":"2021-03-08T00:00:00Z","status":"public","ddc":["530"],"abstract":[{"text":"We study different aspects of quantum field theory at finite density using methods from quantum information theory. For simplicity we focus on massive Dirac fermions with nonzero chemical potential, and work in 1 + 1 space-time dimensions. Using the entanglement entropy on an interval, we construct an entropic <jats:italic>c</jats:italic>-function that is finite. Unlike what happens in Lorentz-invariant theories, this <jats:italic>c</jats:italic>-function exhibits a strong violation of monotonicity; it also encodes the creation of long-range entanglement from the Fermi surface. Motivated by previous works on lattice models, we next calculate numerically the Renyi entropies and find Friedel-type oscillations; these are understood in terms of a defect operator product expansion. Furthermore, we consider the mutual information as a measure of correlation functions between different regions. Using a long-distance expansion previously developed by Cardy, we argue that the mutual information detects Fermi surface correlations already at leading order in the expansion. We also analyze the relative entropy and its Renyi generalizations in order to distinguish states with different charge and/or mass. In particular, we show that states in different superselection sectors give rise to a super-extensive behavior in the relative entropy. Finally, we discuss possible extensions to interacting theories, and argue for the relevance of some of these measures for probing non-Fermi liquids.","lang":"eng"}],"publication_status":"published","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1007/jhep03(2021)079","month":"03","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"external_id":{"pmid":["34253054"]},"title":"Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria","article_type":"original","volume":12,"year":"2021","publication":"mBio","department":[{"_id":"CaGu"}],"date_created":"2024-04-03T07:51:57Z","article_processing_charge":"Yes","publication_identifier":{"issn":["2150-7511"]},"author":[{"first_name":"Dai","last_name":"Le","full_name":"Le, Dai"},{"full_name":"Krasnopeeva, Ekaterina","last_name":"Krasnopeeva","id":"1F1EE44A-BF83-11EA-B3C1-BB9CC619BF3A","first_name":"Ekaterina"},{"first_name":"Faris","last_name":"Sinjab","full_name":"Sinjab, Faris"},{"first_name":"Teuta","last_name":"Pilizota","full_name":"Pilizota, Teuta"},{"full_name":"Kim, Minsu","first_name":"Minsu","last_name":"Kim"}],"file_date_updated":"2024-04-10T09:05:49Z","_id":"15270","has_accepted_license":"1","quality_controlled":"1","article_number":"676","citation":{"mla":"Le, Dai, et al. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.” <i>MBio</i>, vol. 12, no. 4, 676, American Society for Microbiology, 2021, doi:<a href=\"https://doi.org/10.1128/mbio.00676-21\">10.1128/mbio.00676-21</a>.","ista":"Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. 2021. Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. mBio. 12(4), 676.","ieee":"D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, and M. Kim, “Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria,” <i>mBio</i>, vol. 12, no. 4. American Society for Microbiology, 2021.","ama":"Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. <i>mBio</i>. 2021;12(4). doi:<a href=\"https://doi.org/10.1128/mbio.00676-21\">10.1128/mbio.00676-21</a>","apa":"Le, D., Krasnopeeva, E., Sinjab, F., Pilizota, T., &#38; Kim, M. (2021). Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. <i>MBio</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/mbio.00676-21\">https://doi.org/10.1128/mbio.00676-21</a>","short":"D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, M. Kim, MBio 12 (2021).","chicago":"Le, Dai, Ekaterina Krasnopeeva, Faris Sinjab, Teuta Pilizota, and Minsu Kim. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.” <i>MBio</i>. American Society for Microbiology, 2021. <a href=\"https://doi.org/10.1128/mbio.00676-21\">https://doi.org/10.1128/mbio.00676-21</a>."},"keyword":["Virology","Microbiology"],"type":"journal_article","intvolume":"        12","publisher":"American Society for Microbiology","date_published":"2021-08-31T00:00:00Z","status":"public","abstract":[{"text":"Various toxic compounds disrupt bacterial physiology. While bacteria harbor defense mechanisms to mitigate the toxicity, these mechanisms are often coupled to the physiological state of the cells and become ineffective when the physiology is severely disrupted.","lang":"eng"}],"publication_status":"published","ddc":["570"],"doi":"10.1128/mbio.00676-21","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"08","language":[{"iso":"eng"}],"oa":1,"issue":"4","oa_version":"Published Version","date_updated":"2024-04-10T09:13:59Z","file":[{"checksum":"529e3f97ae5c5f5cc743c4fc130c9440","date_created":"2024-04-10T09:05:49Z","file_id":"15309","success":1,"file_size":1344204,"file_name":"2021_mBio_Le.pdf","creator":"dernst","access_level":"open_access","date_updated":"2024-04-10T09:05:49Z","content_type":"application/pdf","relation":"main_file"}],"day":"31"},{"issue":"5","date_updated":"2025-09-10T10:14:11Z","oa_version":"None","ec_funded":1,"language":[{"iso":"eng"}],"day":"01","publication_status":"published","abstract":[{"text":"We settle the complexity of the (∆ + 1)-coloring and (∆ + 1)-list coloring problems intheCONGESTED CLIQUEmodel by presenting a simpledeterministicalgorithm for both problemsrunning in a constant number of rounds.  This matches the complexity of the recent breakthroughrandomizedconstant-round (∆ + 1)-list coloring algorithm due to Chang et al.  [Proceedings of the38th  ACM  Symposium  on  Principles  of  Distributed  Computing,  2019]  and  significantly  improvesupon the state-of-the-artO(log ∆)-round deterministic (∆ + 1)-coloring bound of Parter [Proceed-ings of the 45th Annual International Colloquium on Automata, Languages and Programming].  Aremarkable property of our algorithm is its simplicity.  Whereas the state-of-the-artrandomizedal-gorithms for this problem are based on the quite involved local coloring algorithm of Chang, Li, andPettie [Proceedings of the 50th Annual ACM SIGACT Symposium on Theory of Computing, 2018],our algorithm can be described in just a few lines.  At a high level, it applies a careful derandomiza-tion of a recursive procedure which partitions the nodes and their respective palettes into separatebins.  We show that afterO(1) recursion steps, the remaining uncolored subgraph within each bin haslinear size and thus can be solved locally by collecting it to a single node.  This algorithm can alsobe implemented in the massively parallel computation (MPC) model provided that each machine haslinear (inn, the number of nodes in the input graph) space.  We also show an extension of our algo-rithm to theMPCregime, in which machines havesublinearspace:  we present the first deterministic(∆ + 1)-list coloring algorithm designed for sublinear-spaceMPC, which runs inO(log ∆ + log logn)rounds.","lang":"eng"}],"date_published":"2021-01-01T00:00:00Z","status":"public","month":"01","doi":"10.1137/20m1366502","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","quality_controlled":"1","citation":{"ieee":"A. Czumaj, P. Davies, and M. Parter, “Simple, deterministic, constant-round coloring in congested clique and MPC,” <i>SIAM Journal on Computing</i>, vol. 50, no. 5. Society for Industrial and Applied Mathematics, pp. 1603–1626, 2021.","mla":"Czumaj, Artur, et al. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” <i>SIAM Journal on Computing</i>, vol. 50, no. 5, Society for Industrial and Applied Mathematics, 2021, pp. 1603–26, doi:<a href=\"https://doi.org/10.1137/20m1366502\">10.1137/20m1366502</a>.","ista":"Czumaj A, Davies P, Parter M. 2021. Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. 50(5), 1603–1626.","ama":"Czumaj A, Davies P, Parter M. Simple, deterministic, constant-round coloring in congested clique and MPC. <i>SIAM Journal on Computing</i>. 2021;50(5):1603-1626. doi:<a href=\"https://doi.org/10.1137/20m1366502\">10.1137/20m1366502</a>","apa":"Czumaj, A., Davies, P., &#38; Parter, M. (2021). Simple, deterministic, constant-round coloring in congested clique and MPC. <i>SIAM Journal on Computing</i>. Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/20m1366502\">https://doi.org/10.1137/20m1366502</a>","short":"A. Czumaj, P. Davies, M. Parter, SIAM Journal on Computing 50 (2021) 1603–1626.","chicago":"Czumaj, Artur, Peter Davies, and Merav Parter. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” <i>SIAM Journal on Computing</i>. Society for Industrial and Applied Mathematics, 2021. <a href=\"https://doi.org/10.1137/20m1366502\">https://doi.org/10.1137/20m1366502</a>."},"keyword":["General Mathematics","General Computer Science"],"author":[{"full_name":"Czumaj, Artur","last_name":"Czumaj","first_name":"Artur"},{"first_name":"Peter","orcid":"0000-0002-5646-9524","id":"11396234-BB50-11E9-B24C-90FCE5697425","last_name":"Davies","full_name":"Davies, Peter"},{"last_name":"Parter","first_name":"Merav","full_name":"Parter, Merav"}],"_id":"15271","intvolume":"        50","publisher":"Society for Industrial and Applied Mathematics","type":"journal_article","isi":1,"page":"1603-1626","title":"Simple, deterministic, constant-round coloring in congested clique and MPC","article_type":"original","external_id":{"isi":["000713008600004"]},"volume":50,"year":"2021","project":[{"call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"publication":"SIAM Journal on Computing","date_created":"2024-04-03T07:53:22Z","acknowledgement":"The  first  author  was  partially  supported  by  the  Centre  for  Discrete  Mathematics and its Applications, by the IBM Faculty Award, and by the EPSRC award EP/N011163/1.  The second author was partially supported by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement 754411.  The first and third authors were partially supported by a Weizmann-UK Making Connections grant.","article_processing_charge":"No","publication_identifier":{"issn":["0097-5397"],"eissn":["1095-7111"]},"department":[{"_id":"DaAl"}]},{"type":"journal_article","publisher":"Public Library of Science","intvolume":"        17","file_date_updated":"2024-04-10T08:53:43Z","_id":"15272","author":[{"full_name":"Tang, Leo T. H.","last_name":"Tang","first_name":"Leo T. H."},{"full_name":"Trivedi, Meera","last_name":"Trivedi","first_name":"Meera"},{"full_name":"Freund, Jenna","first_name":"Jenna","last_name":"Freund"},{"last_name":"Salazar","first_name":"Christopher J.","full_name":"Salazar, Christopher J."},{"last_name":"Rahman","first_name":"Maisha","full_name":"Rahman, Maisha"},{"id":"39831956-E4FE-11E9-85DE-0DC7E5697425","last_name":"Ramirez","first_name":"Nelson","full_name":"Ramirez, Nelson"},{"full_name":"Lee, Garrett","last_name":"Lee","first_name":"Garrett"},{"first_name":"Yu","last_name":"Wang","full_name":"Wang, Yu"},{"last_name":"Grant","first_name":"Barth D.","full_name":"Grant, Barth D."},{"full_name":"Bülow, Hannes E.","first_name":"Hannes E.","last_name":"Bülow"}],"keyword":["Cancer Research","Genetics (clinical)","Genetics","Molecular Biology","Ecology","Evolution","Behavior and Systematics"],"citation":{"short":"L.T.H. Tang, M. Trivedi, J. Freund, C.J. Salazar, M. Rahman, N. Ramirez, G. Lee, Y. Wang, B.D. Grant, H.E. Bülow, PLOS Genetics 17 (2021).","apa":"Tang, L. T. H., Trivedi, M., Freund, J., Salazar, C. J., Rahman, M., Ramirez, N., … Bülow, H. E. (2021). The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. <i>PLOS Genetics</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1009475\">https://doi.org/10.1371/journal.pgen.1009475</a>","chicago":"Tang, Leo T. H., Meera Trivedi, Jenna Freund, Christopher J. Salazar, Maisha Rahman, Nelson Ramirez, Garrett Lee, Yu Wang, Barth D. Grant, and Hannes E. Bülow. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” <i>PLOS Genetics</i>. Public Library of Science, 2021. <a href=\"https://doi.org/10.1371/journal.pgen.1009475\">https://doi.org/10.1371/journal.pgen.1009475</a>.","ieee":"L. T. H. Tang <i>et al.</i>, “The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning,” <i>PLOS Genetics</i>, vol. 17, no. 7. Public Library of Science, 2021.","ista":"Tang LTH, Trivedi M, Freund J, Salazar CJ, Rahman M, Ramirez N, Lee G, Wang Y, Grant BD, Bülow HE. 2021. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. 17(7), e1009475.","mla":"Tang, Leo T. H., et al. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” <i>PLOS Genetics</i>, vol. 17, no. 7, e1009475, Public Library of Science, 2021, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1009475\">10.1371/journal.pgen.1009475</a>.","ama":"Tang LTH, Trivedi M, Freund J, et al. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. <i>PLOS Genetics</i>. 2021;17(7). doi:<a href=\"https://doi.org/10.1371/journal.pgen.1009475\">10.1371/journal.pgen.1009475</a>"},"quality_controlled":"1","article_number":"e1009475","has_accepted_license":"1","department":[{"_id":"MaDe"}],"publication_identifier":{"issn":["1553-7404"]},"article_processing_charge":"No","date_created":"2024-04-03T07:57:12Z","publication":"PLOS Genetics","year":"2021","volume":17,"title":"The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning","article_type":"original","external_id":{"pmid":["34197450"]},"file":[{"success":1,"file_size":4224934,"file_name":"2021_PlosGenetics_Tang.pdf","date_created":"2024-04-10T08:53:43Z","file_id":"15308","checksum":"7352b195e4db6d404f702fe6ad8b55ad","content_type":"application/pdf","relation":"main_file","date_updated":"2024-04-10T08:53:43Z","creator":"dernst","access_level":"open_access"}],"day":"01","oa":1,"language":[{"iso":"eng"}],"date_updated":"2024-04-10T08:57:16Z","oa_version":"Published Version","issue":"7","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"doi":"10.1371/journal.pgen.1009475","month":"07","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","date_published":"2021-07-01T00:00:00Z","ddc":["570"],"abstract":[{"lang":"eng","text":"The assembly of neuronal circuits involves the migrations of neurons from their place of birth to their final location in the nervous system, as well as the coordinated growth and patterning of axons and dendrites. In screens for genes required for patterning of the nervous system, we identified the <jats:italic>catp-8/P5A-ATPase</jats:italic> as an important regulator of neural patterning. P5A-ATPases are part of the P-type ATPases, a family of proteins known to serve a conserved function as transporters of ions, lipids and polyamines in unicellular eukaryotes, plants, and humans. While the function of many P-type ATPases is relatively well understood, the function of P5A-ATPases in metazoans remained elusive. We show here, that the <jats:italic>Caenorhabditis elegans</jats:italic> ortholog <jats:italic>catp-8/P5A-ATPase</jats:italic> is required for defined aspects of nervous system development. Specifically, the <jats:italic>catp-8/P5A-ATPase</jats:italic> serves functions in shaping the elaborately sculpted dendritic trees of somatosensory PVD neurons. Moreover, <jats:italic>catp-8/P5A-ATPase</jats:italic> is required for axonal guidance and repulsion at the midline, as well as embryonic and postembryonic neuronal migrations. Interestingly, not all axons at the midline require <jats:italic>catp-8/P5A-ATPase</jats:italic>, although the axons run in the same fascicles and navigate the same space. Similarly, not all neuronal migrations require <jats:italic>catp-8/P5A-ATPase</jats:italic>. A CATP-8/P5A-ATPase reporter is localized to the ER in most, if not all, tissues and <jats:italic>catp-8/P5A-ATPase</jats:italic> can function both cell-autonomously and non-autonomously to regulate neuronal development. Genetic analyses establish that <jats:italic>catp-8/P5A-ATPase</jats:italic> can function in multiple pathways, including the Menorin pathway, previously shown to control dendritic patterning in PVD, and Wnt signaling, which functions to control neuronal migrations. Lastly, we show that <jats:italic>catp-8/P5A-ATPase</jats:italic> is required for localizing select transmembrane proteins necessary for dendrite morphogenesis. Collectively, our studies suggest that <jats:italic>catp-8/P5A-ATPase</jats:italic> serves diverse, yet specific, roles in different genetic pathways and may be involved in the regulation or localization of transmembrane and secreted proteins to specific subcellular compartments."}],"publication_status":"published"},{"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"02","doi":"10.7554/elife.63819","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Synapses of glutamatergic mossy fibers (MFs) onto cerebellar unipolar brush cells (UBCs) generate slow excitatory (ON) or inhibitory (OFF) postsynaptic responses dependent on the complement of glutamate receptors expressed on the UBC’s large dendritic brush. Using mouse brain slice recording and computational modeling of synaptic transmission, we found that substantial glutamate is maintained in the UBC synaptic cleft, sufficient to modify spontaneous firing in OFF UBCs and tonically desensitize AMPARs of ON UBCs. The source of this ambient glutamate was spontaneous, spike-independent exocytosis from the MF terminal, and its level was dependent on activity of glutamate transporters EAAT1–2. Increasing levels of ambient glutamate shifted the polarity of evoked synaptic responses in ON UBCs and altered the phase of responses to in vivo-like synaptic activity. Unlike classical fast synapses, receptors at the UBC synapse are virtually always exposed to a significant level of glutamate, which varies in a graded manner during transmission."}],"publication_status":"published","ddc":["570"],"status":"public","date_published":"2021-02-22T00:00:00Z","day":"22","file":[{"date_updated":"2024-04-09T11:13:07Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf","relation":"main_file","date_created":"2024-04-09T11:13:07Z","file_id":"15307","checksum":"bbd4de2e54b7fbc11fba14f59e87fe3f","success":1,"file_size":6997954,"file_name":"2021_eLife_Balmer.pdf"}],"oa_version":"Published Version","date_updated":"2024-04-09T11:15:01Z","language":[{"iso":"eng"}],"oa":1,"publication_identifier":{"issn":["2050-084X"]},"date_created":"2024-04-03T07:58:11Z","article_processing_charge":"Yes","department":[{"_id":"PeJo"}],"year":"2021","publication":"eLife","article_type":"original","external_id":{"pmid":["33616036"]},"title":"Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse","volume":10,"publisher":"eLife Sciences Publications","intvolume":"        10","type":"journal_article","citation":{"short":"T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021).","apa":"Balmer, T. S., Borges Merjane, C., &#38; Trussell, L. O. (2021). Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.63819\">https://doi.org/10.7554/elife.63819</a>","chicago":"Balmer, Timothy S, Carolina Borges Merjane, and Laurence O Trussell. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” <i>ELife</i>. eLife Sciences Publications, 2021. <a href=\"https://doi.org/10.7554/elife.63819\">https://doi.org/10.7554/elife.63819</a>.","ieee":"T. S. Balmer, C. Borges Merjane, and L. O. Trussell, “Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse,” <i>eLife</i>, vol. 10. eLife Sciences Publications, 2021.","ista":"Balmer TS, Borges Merjane C, Trussell LO. 2021. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. eLife. 10, e63819.","mla":"Balmer, Timothy S., et al. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” <i>ELife</i>, vol. 10, e63819, eLife Sciences Publications, 2021, doi:<a href=\"https://doi.org/10.7554/elife.63819\">10.7554/elife.63819</a>.","ama":"Balmer TS, Borges Merjane C, Trussell LO. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. <i>eLife</i>. 2021;10. doi:<a href=\"https://doi.org/10.7554/elife.63819\">10.7554/elife.63819</a>"},"keyword":["General Immunology and Microbiology","General Biochemistry","Genetics and Molecular Biology","General Medicine","General Neuroscience"],"has_accepted_license":"1","article_number":"e63819","quality_controlled":"1","author":[{"full_name":"Balmer, Timothy S","first_name":"Timothy S","last_name":"Balmer"},{"full_name":"Borges Merjane, Carolina","last_name":"Borges Merjane","id":"4305C450-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0005-401X","first_name":"Carolina"},{"first_name":"Laurence O","last_name":"Trussell","full_name":"Trussell, Laurence O"}],"_id":"15273","file_date_updated":"2024-04-09T11:13:07Z"},{"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"08","doi":"10.1128/mbio.01567-21","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Copper (Cu) is a redox-active micronutrient that is both essential and toxic. Its cellular homeostasis is critical for supporting cuproprotein maturation while avoiding excessive oxidative stress. The Cu importer CcoA is the prototype of the widespread CalT subfamily of the MFS-type transporters. Hence, understanding its molecular mechanism of function is significant. Here, we show that CcoA undergoes a thiol:disulfide oxidoreduction cycle, which is important for its Cu import activity."}],"publication_status":"published","ddc":["570"],"date_published":"2021-08-31T00:00:00Z","status":"public","day":"31","file":[{"creator":"dernst","access_level":"open_access","date_updated":"2024-04-09T10:45:11Z","content_type":"application/pdf","relation":"main_file","checksum":"2f6a57637cb3162eaeeb155a5b031e76","date_created":"2024-04-09T10:45:11Z","file_id":"15306","success":1,"file_name":"2021_mBio_KhalfaouiHassani.pdf","file_size":3383398}],"issue":"4","oa_version":"Published Version","date_updated":"2024-04-09T10:47:16Z","oa":1,"language":[{"iso":"eng"}],"date_created":"2024-04-03T07:59:04Z","article_processing_charge":"No","publication_identifier":{"issn":["2150-7511"]},"department":[{"_id":"LeSa"}],"article_type":"original","title":"Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import","external_id":{"pmid":["34281385"]},"volume":12,"year":"2021","publication":"mBio","intvolume":"        12","publisher":"American Society for Microbiology","type":"journal_article","has_accepted_license":"1","article_number":"e01567","quality_controlled":"1","citation":{"ama":"Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. <i>mBio</i>. 2021;12(4). doi:<a href=\"https://doi.org/10.1128/mbio.01567-21\">10.1128/mbio.01567-21</a>","mla":"Khalfaoui-Hassani, Bahia, et al. “Cysteine Mutants of the Major Facilitator Superfamily-Type Transporter CcoA Provide Insight into Copper Import.” <i>MBio</i>, vol. 12, no. 4, e01567, American Society for Microbiology, 2021, doi:<a href=\"https://doi.org/10.1128/mbio.01567-21\">10.1128/mbio.01567-21</a>.","ieee":"B. Khalfaoui-Hassani, P. I. Trasnea, S. Steimle, H.-G. Koch, and F. Daldal, “Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import,” <i>mBio</i>, vol. 12, no. 4. American Society for Microbiology, 2021.","ista":"Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. 2021. Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. mBio. 12(4), e01567.","chicago":"Khalfaoui-Hassani, Bahia, Petru Iulian Trasnea, Stefan Steimle, Hans-Georg Koch, and Fevzi Daldal. “Cysteine Mutants of the Major Facilitator Superfamily-Type Transporter CcoA Provide Insight into Copper Import.” <i>MBio</i>. American Society for Microbiology, 2021. <a href=\"https://doi.org/10.1128/mbio.01567-21\">https://doi.org/10.1128/mbio.01567-21</a>.","short":"B. Khalfaoui-Hassani, P.I. Trasnea, S. Steimle, H.-G. Koch, F. Daldal, MBio 12 (2021).","apa":"Khalfaoui-Hassani, B., Trasnea, P. I., Steimle, S., Koch, H.-G., &#38; Daldal, F. (2021). Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. <i>MBio</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/mbio.01567-21\">https://doi.org/10.1128/mbio.01567-21</a>"},"keyword":["Virology","Microbiology"],"author":[{"full_name":"Khalfaoui-Hassani, Bahia","first_name":"Bahia","last_name":"Khalfaoui-Hassani"},{"full_name":"Trasnea, Petru Iulian","id":"D560034C-10C4-11EA-ABF4-A4B43DDC885E","last_name":"Trasnea","first_name":"Petru Iulian"},{"full_name":"Steimle, Stefan","last_name":"Steimle","first_name":"Stefan"},{"last_name":"Koch","first_name":"Hans-Georg","full_name":"Koch, Hans-Georg"},{"last_name":"Daldal","first_name":"Fevzi","full_name":"Daldal, Fevzi"}],"file_date_updated":"2024-04-09T10:45:11Z","_id":"15274"},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1912.02342"}],"month":"11","doi":"10.1007/s00493-021-4530-9","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"In 1916, Schur introduced the Ramsey number r(3; m), which is the minimum integer n > 1 such that for any m-coloring of the edges of the complete graph Kn, there is a monochromatic copy of K3. He showed that r(3; m) ≤ O(m!), and a simple construction demonstrates that r(3; m) ≥ 2Ω(m). An old conjecture of Erdős states that r(3; m) = 2Θ(m). In this note, we prove the conjecture for m-colorings with bounded VC-dimension, that is, for m-colorings with the property that the set system induced by the neighborhoods of the vertices with respect to each color class has bounded VC-dimension."}],"publication_status":"published","status":"public","date_published":"2021-11-20T00:00:00Z","day":"20","arxiv":1,"issue":"6","oa_version":"Preprint","date_updated":"2024-04-09T10:40:08Z","oa":1,"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0209-9683"],"eissn":["1439-6912"]},"date_created":"2024-04-03T07:59:57Z","article_processing_charge":"No","department":[{"_id":"HeEd"}],"page":"803-813","year":"2021","publication":"Combinatorica","external_id":{"arxiv":["1912.02342"]},"article_type":"original","title":"Bounded VC-dimension implies the Schur-Erdős conjecture","volume":41,"publisher":"Springer Nature","intvolume":"        41","type":"journal_article","citation":{"ama":"Fox J, Pach J, Suk A. Bounded VC-dimension implies the Schur-Erdős conjecture. <i>Combinatorica</i>. 2021;41(6):803-813. doi:<a href=\"https://doi.org/10.1007/s00493-021-4530-9\">10.1007/s00493-021-4530-9</a>","ista":"Fox J, Pach J, Suk A. 2021. Bounded VC-dimension implies the Schur-Erdős conjecture. Combinatorica. 41(6), 803–813.","ieee":"J. Fox, J. Pach, and A. Suk, “Bounded VC-dimension implies the Schur-Erdős conjecture,” <i>Combinatorica</i>, vol. 41, no. 6. Springer Nature, pp. 803–813, 2021.","mla":"Fox, Jacob, et al. “Bounded VC-Dimension Implies the Schur-Erdős Conjecture.” <i>Combinatorica</i>, vol. 41, no. 6, Springer Nature, 2021, pp. 803–13, doi:<a href=\"https://doi.org/10.1007/s00493-021-4530-9\">10.1007/s00493-021-4530-9</a>.","chicago":"Fox, Jacob, János Pach, and Andrew Suk. “Bounded VC-Dimension Implies the Schur-Erdős Conjecture.” <i>Combinatorica</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00493-021-4530-9\">https://doi.org/10.1007/s00493-021-4530-9</a>.","apa":"Fox, J., Pach, J., &#38; Suk, A. (2021). Bounded VC-dimension implies the Schur-Erdős conjecture. <i>Combinatorica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00493-021-4530-9\">https://doi.org/10.1007/s00493-021-4530-9</a>","short":"J. Fox, J. Pach, A. Suk, Combinatorica 41 (2021) 803–813."},"keyword":["Computational Mathematics","Discrete Mathematics and Combinatorics"],"quality_controlled":"1","author":[{"full_name":"Fox, Jacob","last_name":"Fox","first_name":"Jacob"},{"full_name":"Pach, János","first_name":"János","last_name":"Pach","id":"E62E3130-B088-11EA-B919-BF823C25FEA4"},{"full_name":"Suk, Andrew","first_name":"Andrew","last_name":"Suk"}],"_id":"15275"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1371/journal.ppat.1009641","pmid":1,"month":"06","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2021-06-24T00:00:00Z","status":"public","ddc":["580"],"abstract":[{"lang":"eng","text":"Biotrophic plant pathogens secrete effector proteins to manipulate the host physiology. Effectors suppress defenses and induce an environment favorable to disease development. Sequence-based prediction of effector function is impeded by their rapid evolution rate. In the maize pathogen <jats:italic>Ustilago maydis</jats:italic>, effector-coding genes frequently organize in clusters. Here we describe the functional characterization of the <jats:italic>pleiades</jats:italic>, a cluster of ten effector genes, by analyzing the micro- and macroscopic phenotype of the cluster deletion and expressing these proteins <jats:italic>in planta</jats:italic>. Deletion of the <jats:italic>pleiades</jats:italic> leads to strongly impaired virulence and accumulation of reactive oxygen species (ROS) in infected tissue. Eight of the Pleiades suppress the production of ROS upon perception of pathogen associated molecular patterns (PAMPs). Although functionally redundant, the Pleiades target different host components. The paralogs Taygeta1 and Merope1 suppress ROS production in either the cytoplasm or nucleus, respectively. Merope1 targets and promotes the auto-ubiquitination activity of RFI2, a conserved family of E3 ligases that regulates the production of PAMP-triggered ROS burst in plants."}],"publication_status":"published","file":[{"access_level":"open_access","creator":"dernst","date_updated":"2024-04-09T10:24:43Z","relation":"main_file","content_type":"application/pdf","checksum":"ab8428291a0c14607c4ea5656c029cff","file_id":"15305","date_created":"2024-04-09T10:24:43Z","file_name":"2021_PlosPathogens_Navarrete.pdf","file_size":2616563,"success":1}],"day":"24","oa":1,"language":[{"iso":"eng"}],"oa_version":"Published Version","date_updated":"2024-04-09T10:26:12Z","issue":"6","department":[{"_id":"JiFr"}],"article_processing_charge":"Yes","date_created":"2024-04-03T08:00:34Z","publication_identifier":{"issn":["1553-7374"]},"volume":17,"article_type":"original","title":"The Pleiades are a cluster of fungal effectors that inhibit host defenses","external_id":{"pmid":["34166468"]},"publication":"PLOS Pathogens","year":"2021","type":"journal_article","intvolume":"        17","publisher":"Public Library of Science","file_date_updated":"2024-04-09T10:24:43Z","_id":"15276","author":[{"first_name":"Fernando","last_name":"Navarrete","full_name":"Navarrete, Fernando"},{"full_name":"Grujic, Nenad","first_name":"Nenad","last_name":"Grujic"},{"first_name":"Alexandra","last_name":"Stirnberg","full_name":"Stirnberg, Alexandra"},{"first_name":"Indira","last_name":"Saado","full_name":"Saado, Indira"},{"first_name":"David","last_name":"Aleksza","full_name":"Aleksza, David"},{"full_name":"Gallei, Michelle C","first_name":"Michelle C","orcid":"0000-0003-1286-7368","last_name":"Gallei","id":"35A03822-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Adi, Hazem","last_name":"Adi","first_name":"Hazem"},{"full_name":"Alcântara, André","first_name":"André","last_name":"Alcântara"},{"full_name":"Khan, Mamoona","last_name":"Khan","first_name":"Mamoona"},{"full_name":"Bindics, Janos","first_name":"Janos","last_name":"Bindics"},{"full_name":"Trujillo, Marco","last_name":"Trujillo","first_name":"Marco"},{"last_name":"Djamei","first_name":"Armin","full_name":"Djamei, Armin"}],"article_number":"e1009641","quality_controlled":"1","has_accepted_license":"1","keyword":["Virology","Genetics","Molecular Biology","Immunology","Microbiology","Parasitology"],"citation":{"mla":"Navarrete, Fernando, et al. “The Pleiades Are a Cluster of Fungal Effectors That Inhibit Host Defenses.” <i>PLOS Pathogens</i>, vol. 17, no. 6, e1009641, Public Library of Science, 2021, doi:<a href=\"https://doi.org/10.1371/journal.ppat.1009641\">10.1371/journal.ppat.1009641</a>.","ieee":"F. Navarrete <i>et al.</i>, “The Pleiades are a cluster of fungal effectors that inhibit host defenses,” <i>PLOS Pathogens</i>, vol. 17, no. 6. Public Library of Science, 2021.","ista":"Navarrete F, Grujic N, Stirnberg A, Saado I, Aleksza D, Gallei MC, Adi H, Alcântara A, Khan M, Bindics J, Trujillo M, Djamei A. 2021. The Pleiades are a cluster of fungal effectors that inhibit host defenses. PLOS Pathogens. 17(6), e1009641.","ama":"Navarrete F, Grujic N, Stirnberg A, et al. The Pleiades are a cluster of fungal effectors that inhibit host defenses. <i>PLOS Pathogens</i>. 2021;17(6). doi:<a href=\"https://doi.org/10.1371/journal.ppat.1009641\">10.1371/journal.ppat.1009641</a>","short":"F. Navarrete, N. Grujic, A. Stirnberg, I. Saado, D. Aleksza, M.C. Gallei, H. Adi, A. Alcântara, M. Khan, J. Bindics, M. Trujillo, A. Djamei, PLOS Pathogens 17 (2021).","apa":"Navarrete, F., Grujic, N., Stirnberg, A., Saado, I., Aleksza, D., Gallei, M. C., … Djamei, A. (2021). The Pleiades are a cluster of fungal effectors that inhibit host defenses. <i>PLOS Pathogens</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.ppat.1009641\">https://doi.org/10.1371/journal.ppat.1009641</a>","chicago":"Navarrete, Fernando, Nenad Grujic, Alexandra Stirnberg, Indira Saado, David Aleksza, Michelle C Gallei, Hazem Adi, et al. “The Pleiades Are a Cluster of Fungal Effectors That Inhibit Host Defenses.” <i>PLOS Pathogens</i>. Public Library of Science, 2021. <a href=\"https://doi.org/10.1371/journal.ppat.1009641\">https://doi.org/10.1371/journal.ppat.1009641</a>."}},{"date_published":"2021-01-25T00:00:00Z","status":"public","abstract":[{"text":"Alternative splicing generates multiple transcript and protein isoforms from a single gene and controls transcript intracellular localization and stability by coupling to mRNA export and nonsense-mediated mRNA decay (NMD). RNA interference (RNAi) is a potent mechanism to modulate gene expression. However, its interactions with alternative splicing are poorly understood. We used artificial microRNAs (amiRNAs, also termed shRNAmiR) to knockdown all splice variants of selected target genes in Arabidopsis thaliana. We found that splice variants, which vary by their protein-coding capacity, subcellular localization and sensitivity to NMD, are affected differentially by an amiRNA, although all of them contain the target site. Particular transcript isoforms escape amiRNA-mediated degradation due to their nuclear localization. The nuclear and NMD-sensitive isoforms mask RNAi action in alternatively spliced genes. Interestingly, Arabidopsis SPL genes, which undergo alternative splicing and are targets of miR156, are regulated in the same manner. Moreover, similar results were obtained in mammalian cells using siRNAs, indicating cross-kingdom conservation of these interactions among RNAi and splicing isoforms. Furthermore, we report that amiRNA can trigger artificial alternative splicing, thus expanding the RNAi functional repertoire. Our findings unveil novel interactions between different post-transcriptional processes in defining transcript fates and regulating gene expression.","lang":"eng"}],"publication_status":"published","ddc":["570"],"pmid":1,"doi":"10.1093/nar/gkaa1260","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"01","language":[{"iso":"eng"}],"oa":1,"issue":"2","oa_version":"Published Version","date_updated":"2024-04-09T10:16:40Z","file":[{"checksum":"d3c90660759a5d34ad43ba1def130462","date_created":"2024-04-09T10:14:39Z","file_id":"15304","success":1,"file_name":"2021_NucleicAcidsRes_Fuchs.pdf","file_size":6539791,"creator":"dernst","access_level":"open_access","date_updated":"2024-04-09T10:14:39Z","content_type":"application/pdf","relation":"main_file"}],"day":"25","title":"Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing","article_type":"original","external_id":{"pmid":["33406240"]},"volume":49,"year":"2021","publication":"Nucleic Acids Research","page":"1133-1151","department":[{"_id":"EvBe"}],"date_created":"2024-04-03T08:02:09Z","article_processing_charge":"No","publication_identifier":{"issn":["0305-1048"],"eissn":["1362-4962"]},"author":[{"first_name":"Armin","last_name":"Fuchs","full_name":"Fuchs, Armin"},{"full_name":"Riegler, Stefan","last_name":"Riegler","first_name":"Stefan"},{"full_name":"Ayatollahi, Zahra","last_name":"Ayatollahi","first_name":"Zahra"},{"id":"457160E6-F248-11E8-B48F-1D18A9856A87","last_name":"Cavallari","first_name":"Nicola","full_name":"Cavallari, Nicola"},{"full_name":"Giono, Luciana E","last_name":"Giono","first_name":"Luciana E"},{"full_name":"Nimeth, Barbara A","first_name":"Barbara A","last_name":"Nimeth"},{"last_name":"Mutanwad","first_name":"Krishna V","full_name":"Mutanwad, Krishna V"},{"last_name":"Schweighofer","first_name":"Alois","full_name":"Schweighofer, Alois"},{"full_name":"Lucyshyn, Doris","first_name":"Doris","last_name":"Lucyshyn"},{"last_name":"Barta","first_name":"Andrea","full_name":"Barta, Andrea"},{"full_name":"Petrillo, Ezequiel","last_name":"Petrillo","first_name":"Ezequiel"},{"last_name":"Kalyna","first_name":"Maria","full_name":"Kalyna, Maria"}],"file_date_updated":"2024-04-09T10:14:39Z","_id":"15277","has_accepted_license":"1","quality_controlled":"1","citation":{"ama":"Fuchs A, Riegler S, Ayatollahi Z, et al. Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing. <i>Nucleic Acids Research</i>. 2021;49(2):1133-1151. doi:<a href=\"https://doi.org/10.1093/nar/gkaa1260\">10.1093/nar/gkaa1260</a>","mla":"Fuchs, Armin, et al. “Targeting Alternative Splicing by RNAi: From the Differential Impact on Splice Variants to Triggering Artificial Pre-MRNA Splicing.” <i>Nucleic Acids Research</i>, vol. 49, no. 2, Oxford University Press, 2021, pp. 1133–51, doi:<a href=\"https://doi.org/10.1093/nar/gkaa1260\">10.1093/nar/gkaa1260</a>.","ista":"Fuchs A, Riegler S, Ayatollahi Z, Cavallari N, Giono LE, Nimeth BA, Mutanwad KV, Schweighofer A, Lucyshyn D, Barta A, Petrillo E, Kalyna M. 2021. Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing. Nucleic Acids Research. 49(2), 1133–1151.","ieee":"A. Fuchs <i>et al.</i>, “Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing,” <i>Nucleic Acids Research</i>, vol. 49, no. 2. Oxford University Press, pp. 1133–1151, 2021.","chicago":"Fuchs, Armin, Stefan Riegler, Zahra Ayatollahi, Nicola Cavallari, Luciana E Giono, Barbara A Nimeth, Krishna V Mutanwad, et al. “Targeting Alternative Splicing by RNAi: From the Differential Impact on Splice Variants to Triggering Artificial Pre-MRNA Splicing.” <i>Nucleic Acids Research</i>. Oxford University Press, 2021. <a href=\"https://doi.org/10.1093/nar/gkaa1260\">https://doi.org/10.1093/nar/gkaa1260</a>.","short":"A. Fuchs, S. Riegler, Z. Ayatollahi, N. Cavallari, L.E. Giono, B.A. Nimeth, K.V. Mutanwad, A. Schweighofer, D. Lucyshyn, A. Barta, E. Petrillo, M. Kalyna, Nucleic Acids Research 49 (2021) 1133–1151.","apa":"Fuchs, A., Riegler, S., Ayatollahi, Z., Cavallari, N., Giono, L. E., Nimeth, B. A., … Kalyna, M. (2021). Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing. <i>Nucleic Acids Research</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/nar/gkaa1260\">https://doi.org/10.1093/nar/gkaa1260</a>"},"keyword":["Genetics"],"type":"journal_article","intvolume":"        49","publisher":"Oxford University Press"},{"file":[{"file_name":"2021_Cells_Cordella.pdf","file_size":2196672,"success":1,"file_id":"15303","date_created":"2024-04-09T08:51:22Z","checksum":"1a3b251ce82e2b9474b852d2abe5bb03","relation":"main_file","content_type":"application/pdf","date_updated":"2024-04-09T08:51:22Z","access_level":"open_access","creator":"dernst"}],"day":"04","language":[{"iso":"eng"}],"oa":1,"issue":"10","oa_version":"Published Version","date_updated":"2024-04-09T08:53:23Z","doi":"10.3390/cells10102648","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"10","status":"public","date_published":"2021-10-04T00:00:00Z","abstract":[{"text":"‘Dysbiosis’ of the adult gut microbiota, in response to challenges such as infection, altered diet, stress, and antibiotics treatment has been recently linked to pathological alteration of brain function and behavior. Moreover, gut microbiota composition constantly controls microglia maturation, as revealed by morphological observations and gene expression analysis. However, it is unclear whether microglia functional properties and crosstalk with neurons, known to shape and modulate synaptic development and function, are influenced by the gut microbiota. Here, we investigated how antibiotic-mediated alteration of the gut microbiota influences microglial and neuronal functions in adult mice hippocampus. Hippocampal microglia from adult mice treated with oral antibiotics exhibited increased microglia density, altered basal patrolling activity, and impaired process rearrangement in response to damage. Patch clamp recordings at CA3-CA1 synapses revealed that antibiotics treatment alters neuronal functions, reducing spontaneous postsynaptic glutamatergic currents and decreasing synaptic connectivity, without reducing dendritic spines density. Antibiotics treatment was unable to modulate synaptic function in CX3CR1-deficient mice, pointing to an involvement of microglia–neuron crosstalk through the CX3CL1/CX3CR1 axis in the effect of dysbiosis on neuronal functions. Together, our findings show that antibiotic alteration of gut microbiota impairs synaptic efficacy, suggesting that CX3CL1/CX3CR1 signaling supporting microglia is a major player in in the gut–brain axis, and in particular in the gut microbiota-to-neuron communication pathway.","lang":"eng"}],"publication_status":"published","ddc":["610"],"type":"journal_article","publisher":"MDPI","intvolume":"        10","author":[{"first_name":"Federica","last_name":"Cordella","full_name":"Cordella, Federica"},{"first_name":"Caterina","last_name":"Sanchini","full_name":"Sanchini, Caterina"},{"last_name":"Rosito","first_name":"Maria","full_name":"Rosito, Maria"},{"full_name":"Ferrucci, Laura","last_name":"Ferrucci","first_name":"Laura"},{"full_name":"Pediconi, Natalia","last_name":"Pediconi","first_name":"Natalia"},{"full_name":"Cortese, Barbara","first_name":"Barbara","last_name":"Cortese"},{"full_name":"Guerrieri, Francesca","first_name":"Francesca","last_name":"Guerrieri"},{"full_name":"Pascucci, Giuseppe Rubens","last_name":"Pascucci","first_name":"Giuseppe Rubens"},{"full_name":"Antonangeli, Fabrizio","last_name":"Antonangeli","first_name":"Fabrizio"},{"last_name":"Peruzzi","first_name":"Giovanna","full_name":"Peruzzi, Giovanna"},{"last_name":"Giubettini","first_name":"Maria","full_name":"Giubettini, Maria"},{"orcid":"0000-0003-1843-3173","last_name":"Basilico","id":"36035796-5ACA-11E9-A75E-7AF2E5697425","first_name":"Bernadette","full_name":"Basilico, Bernadette"},{"full_name":"Pagani, Francesca","last_name":"Pagani","first_name":"Francesca"},{"full_name":"Grimaldi, Alfonso","first_name":"Alfonso","last_name":"Grimaldi"},{"first_name":"Giuseppina","last_name":"D’Alessandro","full_name":"D’Alessandro, Giuseppina"},{"full_name":"Limatola, Cristina","last_name":"Limatola","first_name":"Cristina"},{"full_name":"Ragozzino, Davide","last_name":"Ragozzino","first_name":"Davide"},{"first_name":"Silvia","last_name":"Di Angelantonio","full_name":"Di Angelantonio, Silvia"}],"file_date_updated":"2024-04-09T08:51:22Z","_id":"15278","citation":{"ama":"Cordella F, Sanchini C, Rosito M, et al. Antibiotics treatment modulates microglia–synapses interaction. <i>Cells</i>. 2021;10(10). doi:<a href=\"https://doi.org/10.3390/cells10102648\">10.3390/cells10102648</a>","mla":"Cordella, Federica, et al. “Antibiotics Treatment Modulates Microglia–Synapses Interaction.” <i>Cells</i>, vol. 10, no. 10, 2648, MDPI, 2021, doi:<a href=\"https://doi.org/10.3390/cells10102648\">10.3390/cells10102648</a>.","ista":"Cordella F, Sanchini C, Rosito M, Ferrucci L, Pediconi N, Cortese B, Guerrieri F, Pascucci GR, Antonangeli F, Peruzzi G, Giubettini M, Basilico B, Pagani F, Grimaldi A, D’Alessandro G, Limatola C, Ragozzino D, Di Angelantonio S. 2021. Antibiotics treatment modulates microglia–synapses interaction. Cells. 10(10), 2648.","ieee":"F. Cordella <i>et al.</i>, “Antibiotics treatment modulates microglia–synapses interaction,” <i>Cells</i>, vol. 10, no. 10. MDPI, 2021.","chicago":"Cordella, Federica, Caterina Sanchini, Maria Rosito, Laura Ferrucci, Natalia Pediconi, Barbara Cortese, Francesca Guerrieri, et al. “Antibiotics Treatment Modulates Microglia–Synapses Interaction.” <i>Cells</i>. MDPI, 2021. <a href=\"https://doi.org/10.3390/cells10102648\">https://doi.org/10.3390/cells10102648</a>.","short":"F. Cordella, C. Sanchini, M. Rosito, L. Ferrucci, N. Pediconi, B. Cortese, F. Guerrieri, G.R. Pascucci, F. Antonangeli, G. Peruzzi, M. Giubettini, B. Basilico, F. Pagani, A. Grimaldi, G. D’Alessandro, C. Limatola, D. Ragozzino, S. Di Angelantonio, Cells 10 (2021).","apa":"Cordella, F., Sanchini, C., Rosito, M., Ferrucci, L., Pediconi, N., Cortese, B., … Di Angelantonio, S. (2021). Antibiotics treatment modulates microglia–synapses interaction. <i>Cells</i>. MDPI. <a href=\"https://doi.org/10.3390/cells10102648\">https://doi.org/10.3390/cells10102648</a>"},"keyword":["General Medicine"],"has_accepted_license":"1","quality_controlled":"1","article_number":"2648","department":[{"_id":"GaNo"}],"publication_identifier":{"issn":["2073-4409"]},"date_created":"2024-04-03T08:02:52Z","article_processing_charge":"Yes","year":"2021","publication":"Cells","article_type":"original","external_id":{"pmid":["34685628"]},"title":"Antibiotics treatment modulates microglia–synapses interaction","volume":10},{"oa":1,"language":[{"iso":"eng"}],"issue":"9","oa_version":"Preprint","date_updated":"2024-10-21T06:02:15Z","arxiv":1,"corr_author":"1","day":"23","date_published":"2021-12-23T00:00:00Z","status":"public","publication_status":"published","abstract":[{"text":"We formulate and prove an analog of Poonen’s finite-field Bertini theorem with Taylor conditions that holds in the Grothendieck ring of varieties. This gives a broad generalization of the work of Vakil and Wood, who treated the case of smooth hypersurface sections, and is made possible by the use of motivic Euler products to write down candidate motivic probabilities. As applications, we give motivic analogs of many results in arithmetic statistics that have been proven using Poonen’s sieve, including work of Bucur and Kedlaya on complete intersections and Erman and Wood on semiample Bertini theorems.","lang":"eng"}],"doi":"10.2140/ant.2021.15.2195","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"12","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1910.05207"}],"author":[{"first_name":"Margaret","last_name":"Bilu","id":"98C47862-10D5-11EA-BEDD-0F6F3DDC885E","full_name":"Bilu, Margaret"},{"last_name":"Howe","first_name":"Sean","full_name":"Howe, Sean"}],"_id":"15279","scopus_import":"1","quality_controlled":"1","citation":{"ama":"Bilu M, Howe S. Motivic Euler products in motivic statistics. <i>Algebra &#38; Number Theory</i>. 2021;15(9):2195-2259. doi:<a href=\"https://doi.org/10.2140/ant.2021.15.2195\">10.2140/ant.2021.15.2195</a>","mla":"Bilu, Margaret, and Sean Howe. “Motivic Euler Products in Motivic Statistics.” <i>Algebra &#38; Number Theory</i>, vol. 15, no. 9, Mathematical Sciences Publishers, 2021, pp. 2195–259, doi:<a href=\"https://doi.org/10.2140/ant.2021.15.2195\">10.2140/ant.2021.15.2195</a>.","ieee":"M. Bilu and S. Howe, “Motivic Euler products in motivic statistics,” <i>Algebra &#38; Number Theory</i>, vol. 15, no. 9. Mathematical Sciences Publishers, pp. 2195–2259, 2021.","ista":"Bilu M, Howe S. 2021. Motivic Euler products in motivic statistics. Algebra &#38; Number Theory. 15(9), 2195–2259.","chicago":"Bilu, Margaret, and Sean Howe. “Motivic Euler Products in Motivic Statistics.” <i>Algebra &#38; Number Theory</i>. Mathematical Sciences Publishers, 2021. <a href=\"https://doi.org/10.2140/ant.2021.15.2195\">https://doi.org/10.2140/ant.2021.15.2195</a>.","apa":"Bilu, M., &#38; Howe, S. (2021). Motivic Euler products in motivic statistics. <i>Algebra &#38; Number Theory</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/ant.2021.15.2195\">https://doi.org/10.2140/ant.2021.15.2195</a>","short":"M. Bilu, S. Howe, Algebra &#38; Number Theory 15 (2021) 2195–2259."},"keyword":["Algebra and Number Theory"],"type":"journal_article","intvolume":"        15","publisher":"Mathematical Sciences Publishers","title":"Motivic Euler products in motivic statistics","article_type":"original","external_id":{"arxiv":["1910.05207"]},"volume":15,"year":"2021","publication":"Algebra & Number Theory","page":"2195-2259","department":[{"_id":"TiBr"}],"date_created":"2024-04-03T08:12:59Z","article_processing_charge":"No","publication_identifier":{"issn":["1937-0652"],"eissn":["1944-7833"]}},{"day":"08","publisher":"Fundació Scito","corr_author":"1","type":"conference_abstract","quality_controlled":"1","oa_version":"Published Version","article_number":"050","date_updated":"2024-10-09T21:08:49Z","citation":{"ama":"Balazs D, Cimada da Silva J, Dunbar T, Ibáñez M, Hanrath T. Controlled reactive assembly of colloidal nanocrystal superlattices: Mechanism and kinetics. In: <i>Proceedings of the Internet NanoGe Conference on Nanocrystals</i>. Fundació Scito; 2021. doi:<a href=\"https://doi.org/10.29363/nanoge.incnc.2021.050\">10.29363/nanoge.incnc.2021.050</a>","ieee":"D. Balazs, J. Cimada da Silva, T. Dunbar, M. Ibáñez, and T. Hanrath, “Controlled reactive assembly of colloidal nanocrystal superlattices: Mechanism and kinetics,” in <i>Proceedings of the Internet NanoGe Conference on Nanocrystals</i>, Virtual, 2021.","ista":"Balazs D, Cimada da Silva J, Dunbar T, Ibáñez M, Hanrath T. 2021. Controlled reactive assembly of colloidal nanocrystal superlattices: Mechanism and kinetics. Proceedings of the Internet NanoGe Conference on Nanocrystals. iNCNC: Internet nanoGe Conference on Nanocrystals, 050.","mla":"Balazs, Daniel, et al. “Controlled Reactive Assembly of Colloidal Nanocrystal Superlattices: Mechanism and Kinetics.” <i>Proceedings of the Internet NanoGe Conference on Nanocrystals</i>, 050, Fundació Scito, 2021, doi:<a href=\"https://doi.org/10.29363/nanoge.incnc.2021.050\">10.29363/nanoge.incnc.2021.050</a>.","chicago":"Balazs, Daniel, Jessica Cimada da Silva, Tyler Dunbar, Maria Ibáñez, and Tobias Hanrath. “Controlled Reactive Assembly of Colloidal Nanocrystal Superlattices: Mechanism and Kinetics.” In <i>Proceedings of the Internet NanoGe Conference on Nanocrystals</i>. Fundació Scito, 2021. <a href=\"https://doi.org/10.29363/nanoge.incnc.2021.050\">https://doi.org/10.29363/nanoge.incnc.2021.050</a>.","apa":"Balazs, D., Cimada da Silva, J., Dunbar, T., Ibáñez, M., &#38; Hanrath, T. (2021). Controlled reactive assembly of colloidal nanocrystal superlattices: Mechanism and kinetics. In <i>Proceedings of the Internet NanoGe Conference on Nanocrystals</i>. Virtual: Fundació Scito. <a href=\"https://doi.org/10.29363/nanoge.incnc.2021.050\">https://doi.org/10.29363/nanoge.incnc.2021.050</a>","short":"D. Balazs, J. Cimada da Silva, T. Dunbar, M. Ibáñez, T. Hanrath, in:, Proceedings of the Internet NanoGe Conference on Nanocrystals, Fundació Scito, 2021."},"_id":"15280","language":[{"iso":"eng"}],"oa":1,"author":[{"orcid":"0000-0001-7597-043X","last_name":"Balazs","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","first_name":"Daniel","full_name":"Balazs, Daniel"},{"last_name":"Cimada da Silva","first_name":"Jessica","full_name":"Cimada da Silva, Jessica"},{"first_name":"Tyler","last_name":"Dunbar","full_name":"Dunbar, Tyler"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","full_name":"Ibáñez, Maria"},{"full_name":"Hanrath, Tobias","last_name":"Hanrath","first_name":"Tobias"}],"article_processing_charge":"No","month":"06","date_created":"2024-04-03T08:28:26Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.29363/nanoge.incnc.2021.050"}],"conference":{"location":"Virtual","end_date":"2021-07-02","start_date":"2021-06-28","name":"iNCNC: Internet nanoGe Conference on Nanocrystals"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"MaIb"},{"_id":"LifeSc"}],"doi":"10.29363/nanoge.incnc.2021.050","publication_status":"published","date_published":"2021-06-08T00:00:00Z","title":"Controlled reactive assembly of colloidal nanocrystal superlattices: Mechanism and kinetics","publication":"Proceedings of the Internet NanoGe Conference on Nanocrystals","status":"public","year":"2021"},{"department":[{"_id":"FlSc"}],"doi":"10.1017/s1431927621010503","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-04-03T08:57:23Z","article_processing_charge":"No","month":"08","publication_identifier":{"eissn":["1435-8115"],"issn":["1431-9276"]},"article_type":"original","title":"Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography","date_published":"2021-08-01T00:00:00Z","volume":27,"year":"2021","status":"public","publication":"Microscopy and Microanalysis","page":"3024-3026","publication_status":"published","type":"journal_article","day":"01","intvolume":"        27","publisher":"Oxford University Press","author":[{"last_name":"Nicolas","first_name":"William","full_name":"Nicolas, William"},{"full_name":"Fäßler, Florian","first_name":"Florian","orcid":"0000-0001-7149-769X","id":"404F5528-F248-11E8-B48F-1D18A9856A87","last_name":"Fäßler"},{"last_name":"Meyerowitz","first_name":"Elliot","full_name":"Meyerowitz, Elliot"},{"full_name":"Jensen, Grant","last_name":"Jensen","first_name":"Grant"}],"_id":"15283","language":[{"iso":"eng"}],"issue":"S1","oa_version":"None","quality_controlled":"1","date_updated":"2024-04-09T07:55:56Z","citation":{"ista":"Nicolas W, Fäßler F, Meyerowitz E, Jensen G. 2021. Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography. Microscopy and Microanalysis. 27(S1), 3024–3026.","ieee":"W. Nicolas, F. Fäßler, E. Meyerowitz, and G. Jensen, “Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography,” <i>Microscopy and Microanalysis</i>, vol. 27, no. S1. Oxford University Press, pp. 3024–3026, 2021.","mla":"Nicolas, William, et al. “Peaking into the Plant Cell Wall Using Cryo-FIB Milling and Electron Cryo-Tomography.” <i>Microscopy and Microanalysis</i>, vol. 27, no. S1, Oxford University Press, 2021, pp. 3024–26, doi:<a href=\"https://doi.org/10.1017/s1431927621010503\">10.1017/s1431927621010503</a>.","ama":"Nicolas W, Fäßler F, Meyerowitz E, Jensen G. Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography. <i>Microscopy and Microanalysis</i>. 2021;27(S1):3024-3026. doi:<a href=\"https://doi.org/10.1017/s1431927621010503\">10.1017/s1431927621010503</a>","apa":"Nicolas, W., Fäßler, F., Meyerowitz, E., &#38; Jensen, G. (2021). Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography. <i>Microscopy and Microanalysis</i>. Oxford University Press. <a href=\"https://doi.org/10.1017/s1431927621010503\">https://doi.org/10.1017/s1431927621010503</a>","short":"W. Nicolas, F. Fäßler, E. Meyerowitz, G. Jensen, Microscopy and Microanalysis 27 (2021) 3024–3026.","chicago":"Nicolas, William, Florian Fäßler, Elliot Meyerowitz, and Grant Jensen. “Peaking into the Plant Cell Wall Using Cryo-FIB Milling and Electron Cryo-Tomography.” <i>Microscopy and Microanalysis</i>. Oxford University Press, 2021. <a href=\"https://doi.org/10.1017/s1431927621010503\">https://doi.org/10.1017/s1431927621010503</a>."},"keyword":["Instrumentation"]},{"status":"public","year":"2021","title":"RevTerm","date_published":"2021-06-01T00:00:00Z","related_material":{"record":[{"status":"public","id":"9644","relation":"used_in_publication"}]},"abstract":[{"text":"RevTerm is a static analysis tool for proving non-termination of integer C programs (possibly with non-determinism). RevTerm is an implementation of our method for non-termination proving presented in the paper “Proving Non-termination by Program Reversal”.\r\n\r\n","lang":"eng"}],"ddc":["000"],"department":[{"_id":"KrCh"}],"doi":"10.1145/3410304","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1145/3410304"}],"date_created":"2024-04-03T09:00:42Z","month":"06","article_processing_charge":"No","author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu"},{"first_name":"Ehsan Kafshdar","last_name":"Goharshady","full_name":"Goharshady, Ehsan Kafshdar"},{"first_name":"Petr","last_name":"Novotný","id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","full_name":"Novotný, Petr"},{"orcid":"0000-0002-4681-1699","last_name":"Zikelic","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","first_name":"Dorde","full_name":"Zikelic, Dorde"}],"oa":1,"_id":"15284","citation":{"mla":"Chatterjee, Krishnendu, et al. <i>RevTerm</i>. Association for Computing Machinery, 2021, doi:<a href=\"https://doi.org/10.1145/3410304\">10.1145/3410304</a>.","ista":"Chatterjee K, Goharshady EK, Novotný P, Zikelic D. 2021. RevTerm, Association for Computing Machinery, <a href=\"https://doi.org/10.1145/3410304\">10.1145/3410304</a>.","ieee":"K. Chatterjee, E. K. Goharshady, P. Novotný, and D. Zikelic, “RevTerm.” Association for Computing Machinery, 2021.","ama":"Chatterjee K, Goharshady EK, Novotný P, Zikelic D. RevTerm. 2021. doi:<a href=\"https://doi.org/10.1145/3410304\">10.1145/3410304</a>","short":"K. Chatterjee, E.K. Goharshady, P. Novotný, D. Zikelic, (2021).","apa":"Chatterjee, K., Goharshady, E. K., Novotný, P., &#38; Zikelic, D. (2021). RevTerm. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3410304\">https://doi.org/10.1145/3410304</a>","chicago":"Chatterjee, Krishnendu, Ehsan Kafshdar Goharshady, Petr Novotný, and Dorde Zikelic. “RevTerm.” Association for Computing Machinery, 2021. <a href=\"https://doi.org/10.1145/3410304\">https://doi.org/10.1145/3410304</a>."},"has_accepted_license":"1","date_updated":"2025-04-15T06:25:30Z","oa_version":"Published Version","type":"research_data_reference","corr_author":"1","publisher":"Association for Computing Machinery","day":"01"},{"language":[{"iso":"eng"}],"oa":1,"oa_version":"Published Version","date_updated":"2024-04-09T06:51:50Z","issue":"3","file":[{"creator":"dernst","access_level":"open_access","date_updated":"2024-04-09T06:49:47Z","content_type":"application/pdf","relation":"main_file","checksum":"f67142b1e1e8ca5cd7a6a6798f46375e","date_created":"2024-04-09T06:49:47Z","file_id":"15302","success":1,"file_name":"2021_Hearts_Rubel.pdf","file_size":3539897}],"day":"24","date_published":"2021-08-24T00:00:00Z","status":"public","ddc":["610"],"abstract":[{"lang":"eng","text":"Ever since the first publication of the standard communication protocol for computer-assisted electrocardiography (SCP-ECG), prENV 1064, in 1993, by the European Committee for Standardization (CEN), SCP-ECG has become a leading example in health informatics, enabling open, secure, and well-documented digital data exchange at a low cost, for quick and efficient cardiovascular disease detection and management. Based on the experiences gained, since the 1970s, in computerized electrocardiology, and on the results achieved by the pioneering, international cooperative research on common standards for quantitative electrocardiography (CSE), SCP-ECG was designed, from the beginning, to empower personalized medicine, thanks to serial ECG analysis. The fundamental concept behind SCP-ECG is to convey the necessary information for ECG re-analysis, serial comparison, and interpretation, and to structure the ECG data and metadata in sections that are mostly optional in order to fit all use cases. SCP-ECG is open to the storage of the ECG signal and ECG measurement data, whatever the ECG recording modality or computation method, and can store the over-reading trails and ECG annotations, as well as any computerized or medical interpretation reports. Only the encoding syntax and the semantics of the ECG descriptors and of the diagnosis codes are standardized. We present all of the landmarks in the development and publication of SCP-ECG, from the early 1990s to the 2009 International Organization for Standardization (ISO) SCP-ECG standards, including the latest version published by CEN in 2020, which now encompasses rest and stress ECGs, Holter recordings, and protocol-based trials."}],"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.3390/hearts2030031","month":"08","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"15285","file_date_updated":"2024-04-09T06:49:47Z","author":[{"full_name":"Rubel, Paul","first_name":"Paul","last_name":"Rubel"},{"full_name":"Fayn, Jocelyne","first_name":"Jocelyne","last_name":"Fayn"},{"full_name":"Macfarlane, Peter W.","first_name":"Peter W.","last_name":"Macfarlane"},{"full_name":"Pani, Danilo","first_name":"Danilo","last_name":"Pani"},{"last_name":"Schlögl","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5621-8100","first_name":"Alois","full_name":"Schlögl, Alois"},{"first_name":"Alpo","last_name":"Värri","full_name":"Värri, Alpo"}],"quality_controlled":"1","has_accepted_license":"1","keyword":["General Medicine"],"citation":{"chicago":"Rubel, Paul, Jocelyne Fayn, Peter W. Macfarlane, Danilo Pani, Alois Schlögl, and Alpo Värri. “The History and Challenges of SCP-ECG: The Standard Communication Protocol for Computer-Assisted Electrocardiography.” <i>Hearts</i>. MDPI, 2021. <a href=\"https://doi.org/10.3390/hearts2030031\">https://doi.org/10.3390/hearts2030031</a>.","short":"P. Rubel, J. Fayn, P.W. Macfarlane, D. Pani, A. Schlögl, A. Värri, Hearts 2 (2021) 384–409.","apa":"Rubel, P., Fayn, J., Macfarlane, P. W., Pani, D., Schlögl, A., &#38; Värri, A. (2021). The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography. <i>Hearts</i>. MDPI. <a href=\"https://doi.org/10.3390/hearts2030031\">https://doi.org/10.3390/hearts2030031</a>","ama":"Rubel P, Fayn J, Macfarlane PW, Pani D, Schlögl A, Värri A. The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography. <i>Hearts</i>. 2021;2(3):384-409. doi:<a href=\"https://doi.org/10.3390/hearts2030031\">10.3390/hearts2030031</a>","ista":"Rubel P, Fayn J, Macfarlane PW, Pani D, Schlögl A, Värri A. 2021. The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography. Hearts. 2(3), 384–409.","mla":"Rubel, Paul, et al. “The History and Challenges of SCP-ECG: The Standard Communication Protocol for Computer-Assisted Electrocardiography.” <i>Hearts</i>, vol. 2, no. 3, MDPI, 2021, pp. 384–409, doi:<a href=\"https://doi.org/10.3390/hearts2030031\">10.3390/hearts2030031</a>.","ieee":"P. Rubel, J. Fayn, P. W. Macfarlane, D. Pani, A. Schlögl, and A. Värri, “The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography,” <i>Hearts</i>, vol. 2, no. 3. MDPI, pp. 384–409, 2021."},"type":"journal_article","intvolume":"         2","publisher":"MDPI","volume":2,"title":"The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography","article_type":"review","publication":"Hearts","year":"2021","page":"384-409","department":[{"_id":"ScienComp"}],"article_processing_charge":"Yes","acknowledgement":"This research received no external funding. The authors thank the large number of researchers, engineers, cardiologists, and clinicians from academia, industry, and normalization organizations who contributed to the development and testing of the SCP-ECG standards.","date_created":"2024-04-03T09:03:31Z","publication_identifier":{"issn":["2673-3846"]}},{"corr_author":"1","day":"01","ec_funded":1,"oa":1,"language":[{"iso":"eng"}],"date_updated":"2025-07-16T08:04:23Z","oa_version":"Preprint","arxiv":1,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","month":"07","main_file_link":[{"url":"https://arxiv.org/abs/2101.12617","open_access":"1"}],"date_published":"2021-07-01T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"We study a class of convex-concave saddle-point problems of the form minxmaxy⟨Kx,y⟩+fP(x)−h∗(y) where K is a linear operator, fP is the sum of a convex function f with a Lipschitz-continuous gradient and the indicator function of a bounded convex polytope P, and h∗ is a convex (possibly nonsmooth) function. Such problem arises, for example, as a Lagrangian relaxation of various discrete optimization problems. Our main assumptions are the existence of an efficient linear minimization oracle (lmo) for fP and an efficient proximal map for h∗ which motivate the solution via a blend of proximal primal-dual algorithms and Frank-Wolfe algorithms. In case h∗ is the indicator function of a linear constraint and function f is quadratic, we show a O(1/n2) convergence rate on the dual objective, requiring O(nlogn) calls of lmo. If the problem comes from the constrained optimization problem minx∈Rd{fP(x)|Ax−b=0} then we additionally get bound O(1/n2) both on the primal gap and on the infeasibility gap. In the most general case, we show a O(1/n) convergence rate of the primal-dual gap again requiring O(nlogn) calls of lmo. To the best of our knowledge, this improves on the known convergence rates for the considered class of saddle-point problems. We show applications to labeling problems frequently appearing in machine learning and computer vision."}],"publication_status":"published","type":"conference","author":[{"full_name":"Kolmogorov, Vladimir","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir"},{"full_name":"Pock, Thomas","first_name":"Thomas","last_name":"Pock"}],"_id":"10552","scopus_import":"1","quality_controlled":"1","citation":{"mla":"Kolmogorov, Vladimir, and Thomas Pock. “One-Sided Frank-Wolfe Algorithms for Saddle Problems.” <i>38th International Conference on Machine Learning</i>, 2021.","ista":"Kolmogorov V, Pock T. 2021. One-sided Frank-Wolfe algorithms for saddle problems. 38th International Conference on Machine Learning. ICML: International Conference on Machine Learning.","ieee":"V. Kolmogorov and T. Pock, “One-sided Frank-Wolfe algorithms for saddle problems,” in <i>38th International Conference on Machine Learning</i>, Virtual, 2021.","ama":"Kolmogorov V, Pock T. One-sided Frank-Wolfe algorithms for saddle problems. In: <i>38th International Conference on Machine Learning</i>. ; 2021.","short":"V. Kolmogorov, T. Pock, in:, 38th International Conference on Machine Learning, 2021.","apa":"Kolmogorov, V., &#38; Pock, T. (2021). One-sided Frank-Wolfe algorithms for saddle problems. In <i>38th International Conference on Machine Learning</i>. Virtual.","chicago":"Kolmogorov, Vladimir, and Thomas Pock. “One-Sided Frank-Wolfe Algorithms for Saddle Problems.” In <i>38th International Conference on Machine Learning</i>, 2021."},"conference":{"end_date":"2021-07-24","start_date":"2021-07-18","location":"Virtual","name":"ICML: International Conference on Machine Learning"},"department":[{"_id":"VlKo"}],"date_created":"2021-12-16T12:41:20Z","acknowledgement":"Vladimir Kolmogorov was supported by the European Research Council under the European Unions Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no 616160. Thomas Pock acknowledges support by an ERC grant HOMOVIS, no 640156.","article_processing_charge":"No","title":"One-sided Frank-Wolfe algorithms for saddle problems","external_id":{"arxiv":["2101.12617"]},"year":"2021","publication":"38th International Conference on Machine Learning","project":[{"grant_number":"616160","call_identifier":"FP7","_id":"25FBA906-B435-11E9-9278-68D0E5697425","name":"Discrete Optimization in Computer Vision: Theory and Practice"}]},{"type":"conference","isi":1,"publisher":"Association for Computing Machinery","author":[{"full_name":"Gelashvili, Rati","last_name":"Gelashvili","first_name":"Rati"},{"last_name":"Kokoris Kogias","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","first_name":"Eleftherios","full_name":"Kokoris Kogias, Eleftherios"},{"full_name":"Spiegelman, Alexander","first_name":"Alexander","last_name":"Spiegelman"},{"full_name":"Xiang, Zhuolun","last_name":"Xiang","first_name":"Zhuolun"}],"_id":"10553","quality_controlled":"1","scopus_import":"1","citation":{"short":"R. Gelashvili, E. Kokoris Kogias, A. Spiegelman, Z. Xiang, in:, Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2021, pp. 187–190.","apa":"Gelashvili, R., Kokoris Kogias, E., Spiegelman, A., &#38; Xiang, Z. (2021). Brief announcement: Be prepared when network goes bad: An asynchronous view-change protocol. In <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i> (pp. 187–190). Virtual, Italy: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3465084.3467941\">https://doi.org/10.1145/3465084.3467941</a>","chicago":"Gelashvili, Rati, Eleftherios Kokoris Kogias, Alexander Spiegelman, and Zhuolun Xiang. “Brief Announcement: Be Prepared When Network Goes Bad: An Asynchronous View-Change Protocol.” In <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>, 187–90. Association for Computing Machinery, 2021. <a href=\"https://doi.org/10.1145/3465084.3467941\">https://doi.org/10.1145/3465084.3467941</a>.","ista":"Gelashvili R, Kokoris Kogias E, Spiegelman A, Xiang Z. 2021. Brief announcement: Be prepared when network goes bad: An asynchronous view-change protocol. Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing. PODC: Principles of Distributed Computing, 187–190.","mla":"Gelashvili, Rati, et al. “Brief Announcement: Be Prepared When Network Goes Bad: An Asynchronous View-Change Protocol.” <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2021, pp. 187–90, doi:<a href=\"https://doi.org/10.1145/3465084.3467941\">10.1145/3465084.3467941</a>.","ieee":"R. Gelashvili, E. Kokoris Kogias, A. Spiegelman, and Z. Xiang, “Brief announcement: Be prepared when network goes bad: An asynchronous view-change protocol,” in <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>, Virtual, Italy, 2021, pp. 187–190.","ama":"Gelashvili R, Kokoris Kogias E, Spiegelman A, Xiang Z. Brief announcement: Be prepared when network goes bad: An asynchronous view-change protocol. In: <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2021:187-190. doi:<a href=\"https://doi.org/10.1145/3465084.3467941\">10.1145/3465084.3467941</a>"},"keyword":["optimal","state machine replication","fallback","asynchrony","byzantine faults"],"conference":{"name":"PODC: Principles of Distributed Computing","start_date":"2021-07-26","end_date":"2021-07-30","location":"Virtual, Italy"},"department":[{"_id":"ElKo"}],"date_created":"2021-12-16T13:20:19Z","article_processing_charge":"No","publication_identifier":{"isbn":["9-781-4503-8548-0"]},"title":"Brief announcement: Be prepared when network goes bad: An asynchronous view-change protocol","external_id":{"isi":["000744439800018"],"arxiv":["2103.03181"]},"year":"2021","publication":"Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing","page":"187-190","day":"21","language":[{"iso":"eng"}],"oa":1,"date_updated":"2023-09-04T11:42:10Z","oa_version":"Preprint","arxiv":1,"doi":"10.1145/3465084.3467941","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"07","main_file_link":[{"url":"https://arxiv.org/abs/2103.03181","open_access":"1"}],"date_published":"2021-07-21T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"The popularity of permissioned blockchain systems demands BFT SMR protocols that are efficient under good network conditions (synchrony) and robust under bad network conditions (asynchrony). The state-of-the-art partially synchronous BFT SMR protocols provide optimal linear communication cost per decision under synchrony and good leaders, but lose liveness under asynchrony. On the other hand, the state-of-the-art asynchronous BFT SMR protocols are live even under asynchrony, but always pay quadratic cost even under synchrony. In this paper, we propose a BFT SMR protocol that achieves the best of both worlds -- optimal linear cost per decision under good networks and leaders, optimal quadratic cost per decision under bad networks, and remains always live."}],"publication_status":"published"},{"author":[{"last_name":"Keidar","first_name":"Idit","full_name":"Keidar, Idit"},{"last_name":"Kokoris Kogias","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","first_name":"Eleftherios","full_name":"Kokoris Kogias, Eleftherios"},{"first_name":"Oded","last_name":"Naor","full_name":"Naor, Oded"},{"first_name":"Alexander","last_name":"Spiegelman","full_name":"Spiegelman, Alexander"}],"_id":"10554","quality_controlled":"1","scopus_import":"1","citation":{"chicago":"Keidar, Idit, Eleftherios Kokoris Kogias, Oded Naor, and Alexander Spiegelman. “All You Need Is DAG.” In <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>, 165–75. Association for Computing Machinery, 2021. <a href=\"https://doi.org/10.1145/3465084.3467905\">https://doi.org/10.1145/3465084.3467905</a>.","short":"I. Keidar, E. Kokoris Kogias, O. Naor, A. Spiegelman, in:, Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2021, pp. 165–175.","apa":"Keidar, I., Kokoris Kogias, E., Naor, O., &#38; Spiegelman, A. (2021). All You Need is DAG. In <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i> (pp. 165–175). Virtual, Italy: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3465084.3467905\">https://doi.org/10.1145/3465084.3467905</a>","ama":"Keidar I, Kokoris Kogias E, Naor O, Spiegelman A. All You Need is DAG. In: <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2021:165-175. doi:<a href=\"https://doi.org/10.1145/3465084.3467905\">10.1145/3465084.3467905</a>","ista":"Keidar I, Kokoris Kogias E, Naor O, Spiegelman A. 2021. All You Need is DAG. Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing. PODC: Principles of Distributed Computing, 165–175.","mla":"Keidar, Idit, et al. “All You Need Is DAG.” <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2021, pp. 165–75, doi:<a href=\"https://doi.org/10.1145/3465084.3467905\">10.1145/3465084.3467905</a>.","ieee":"I. Keidar, E. Kokoris Kogias, O. Naor, and A. Spiegelman, “All You Need is DAG,” in <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>, Virtual, Italy, 2021, pp. 165–175."},"type":"conference","isi":1,"publisher":"Association for Computing Machinery","external_id":{"arxiv":["2102.08325"],"isi":["000744439800016"]},"title":"All You Need is DAG","year":"2021","publication":"Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing","page":"165-175","conference":{"location":"Virtual, Italy","end_date":"2021-07-30","start_date":"2021-07-26","name":"PODC: Principles of Distributed Computing"},"department":[{"_id":"ElKo"}],"acknowledgement":"Oded Naor is grateful to the Technion Hiroshi Fujiwara Cyber-Security Research Center for providing a research grant. Part of Oded’s work was done while at Novi Research. This work was funded by the Novi team at Facebook. We also wish to thank the Novi Research team for valuable feedback, and in particular George Danezis, Alberto Sonnino, and Dahlia Malkhi.\r\n","date_created":"2021-12-16T13:21:13Z","article_processing_charge":"No","publication_identifier":{"isbn":["978-1-4503-8548-0"]},"language":[{"iso":"eng"}],"oa":1,"oa_version":"Preprint","date_updated":"2023-08-17T06:24:44Z","arxiv":1,"day":"21","date_published":"2021-07-21T00:00:00Z","status":"public","publication_status":"published","abstract":[{"lang":"eng","text":"We present DAG-Rider, the first asynchronous Byzantine Atomic Broadcast protocol that achieves optimal resilience, optimal amortized communication complexity, and optimal time complexity. DAG-Rider is post-quantum safe and ensures that all values proposed by correct processes eventually get delivered. We construct DAG-Rider in two layers: In the first layer, processes reliably broadcast their proposals and build a structured Directed Acyclic Graph (DAG) of the communication among them. In the second layer, processes locally observe their DAGs and totally order all proposals with no extra communication."}],"doi":"10.1145/3465084.3467905","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"07","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2102.08325"}]},{"language":[{"iso":"eng"}],"oa":1,"ec_funded":1,"date_updated":"2025-04-15T08:38:16Z","oa_version":"Published Version","issue":"2","arxiv":1,"corr_author":"1","file":[{"date_updated":"2021-12-17T08:12:37Z","access_level":"open_access","creator":"cchlebak","relation":"main_file","content_type":"application/pdf","file_id":"10561","date_created":"2021-12-17T08:12:37Z","checksum":"60a1bc9c9b616b1b155044bb8cfc6484","file_size":1917512,"file_name":"2021_PhysRevResearch_Aggarwal.pdf","success":1}],"day":"15","date_published":"2021-04-15T00:00:00Z","status":"public","ddc":["620"],"abstract":[{"lang":"eng","text":"Hole gases in planar germanium can have high mobilities in combination with strong spin-orbit interaction and electrically tunable g factors, and are therefore emerging as a promising platform for creating hybrid superconductor-semiconductor devices. A key challenge towards hybrid Ge-based quantum technologies is the design of high-quality interfaces and superconducting contacts that are robust against magnetic fields. In this work, by combining the assets of aluminum, which provides good contact to the Ge, and niobium, which has a significant superconducting gap, we demonstrate highly transparent low-disordered JoFETs with relatively large ICRN products that are capable of withstanding high magnetic fields. We furthermore demonstrate the ability of phase-biasing individual JoFETs, opening up an avenue to explore topological superconductivity in planar Ge. The persistence of superconductivity in the reported hybrid devices beyond 1.8 T paves the way towards integrating spin qubits and proximity-induced superconductivity on the same chip."}],"publication_status":"published","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","doi":"10.1103/physrevresearch.3.l022005","month":"04","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2021-12-17T08:12:37Z","_id":"10559","author":[{"first_name":"Kushagra","id":"b22ab905-3539-11eb-84c3-fc159dcd79cb","last_name":"Aggarwal","orcid":"0000-0001-9985-9293","full_name":"Aggarwal, Kushagra"},{"full_name":"Hofmann, Andrea C","last_name":"Hofmann","id":"340F461A-F248-11E8-B48F-1D18A9856A87","first_name":"Andrea C"},{"full_name":"Jirovec, Daniel","orcid":"0000-0002-7197-4801","last_name":"Jirovec","id":"4C473F58-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel"},{"first_name":"Ivan","orcid":"0000-0002-7370-5357","id":"2A307FE2-F248-11E8-B48F-1D18A9856A87","last_name":"Prieto Gonzalez","full_name":"Prieto Gonzalez, Ivan"},{"full_name":"Sammak, Amir","first_name":"Amir","last_name":"Sammak"},{"first_name":"Marc","last_name":"Botifoll","full_name":"Botifoll, Marc"},{"first_name":"Sara","last_name":"Martí-Sánchez","full_name":"Martí-Sánchez, Sara"},{"full_name":"Veldhorst, Menno","last_name":"Veldhorst","first_name":"Menno"},{"last_name":"Arbiol","first_name":"Jordi","full_name":"Arbiol, Jordi"},{"full_name":"Scappucci, Giordano","last_name":"Scappucci","first_name":"Giordano"},{"first_name":"Jeroen","last_name":"Danon","full_name":"Danon, Jeroen"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros","orcid":"0000-0001-8342-202X","first_name":"Georgios","full_name":"Katsaros, Georgios"}],"quality_controlled":"1","scopus_import":"1","article_number":"L022005","has_accepted_license":"1","keyword":["general engineering"],"citation":{"chicago":"Aggarwal, Kushagra, Andrea C Hofmann, Daniel Jirovec, Ivan Prieto Gonzalez, Amir Sammak, Marc Botifoll, Sara Martí-Sánchez, et al. “Enhancement of Proximity-Induced Superconductivity in a Planar Ge Hole Gas.” <i>Physical Review Research</i>. American Physical Society, 2021. <a href=\"https://doi.org/10.1103/physrevresearch.3.l022005\">https://doi.org/10.1103/physrevresearch.3.l022005</a>.","apa":"Aggarwal, K., Hofmann, A. C., Jirovec, D., Prieto Gonzalez, I., Sammak, A., Botifoll, M., … Katsaros, G. (2021). Enhancement of proximity-induced superconductivity in a planar Ge hole gas. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevresearch.3.l022005\">https://doi.org/10.1103/physrevresearch.3.l022005</a>","short":"K. Aggarwal, A.C. Hofmann, D. Jirovec, I. Prieto Gonzalez, A. Sammak, M. Botifoll, S. Martí-Sánchez, M. Veldhorst, J. Arbiol, G. Scappucci, J. Danon, G. Katsaros, Physical Review Research 3 (2021).","ama":"Aggarwal K, Hofmann AC, Jirovec D, et al. Enhancement of proximity-induced superconductivity in a planar Ge hole gas. <i>Physical Review Research</i>. 2021;3(2). doi:<a href=\"https://doi.org/10.1103/physrevresearch.3.l022005\">10.1103/physrevresearch.3.l022005</a>","ista":"Aggarwal K, Hofmann AC, Jirovec D, Prieto Gonzalez I, Sammak A, Botifoll M, Martí-Sánchez S, Veldhorst M, Arbiol J, Scappucci G, Danon J, Katsaros G. 2021. Enhancement of proximity-induced superconductivity in a planar Ge hole gas. Physical Review Research. 3(2), L022005.","ieee":"K. Aggarwal <i>et al.</i>, “Enhancement of proximity-induced superconductivity in a planar Ge hole gas,” <i>Physical Review Research</i>, vol. 3, no. 2. American Physical Society, 2021.","mla":"Aggarwal, Kushagra, et al. “Enhancement of Proximity-Induced Superconductivity in a Planar Ge Hole Gas.” <i>Physical Review Research</i>, vol. 3, no. 2, L022005, American Physical Society, 2021, doi:<a href=\"https://doi.org/10.1103/physrevresearch.3.l022005\">10.1103/physrevresearch.3.l022005</a>."},"type":"journal_article","intvolume":"         3","publisher":"American Physical Society","volume":3,"title":"Enhancement of proximity-induced superconductivity in a planar Ge hole gas","article_type":"original","external_id":{"arxiv":["2012.00322"]},"publication":"Physical Review Research","project":[{"grant_number":"844511","call_identifier":"H2020","_id":"26A151DA-B435-11E9-9278-68D0E5697425","name":"Majorana bound states in Ge/SiGe heterostructures"},{"name":"TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS","_id":"237E5020-32DE-11EA-91FC-C7463DDC885E","grant_number":"862046","call_identifier":"H2020"}],"year":"2021","related_material":{"record":[{"relation":"research_data","status":"public","id":"8834"},{"status":"public","id":"8831","relation":"earlier_version"}]},"department":[{"_id":"GeKa"}],"article_processing_charge":"No","acknowledgement":"This research and related results were made possible with the support of the NOMIS Foundation. This research was supported by the Scientific Service Units of IST Austria through resources provided by the MIBA Machine Shop and the nanofabrication facility, the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant agreement No. 844511 Grant Agreement No. 862046. ICN2 acknowledge funding from Generalitat de Catalunya 2017 SGR 327. ICN2 is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autnoma de Barcelona Materials Science PhD program. The HAADF-STEM microscopy was conducted in the Laboratorio de Microscopias Avanzadas at Instituto de Nanociencia de Aragon-Universidad de Zaragoza. Authors acknowledge the LMA-INA for offering access to their instruments and expertise. We acknowledge support from CSIC Research Platform on Quantum Technologies PTI-001. This project has received funding from the European Union's Horizon 2020 research and innovation programme under Grant Agreement No. 823717 ESTEEM3. M.B. acknowledges support from SUR Generalitat de Catalunya and the EU Social Fund; project ref. 2020 FI 00103. G.S. and M.V. acknowledge support through a projectruimte grant associated with the Netherlands Organization of Scientific Research (NWO). J.D. acknowledges support through FRIPRO-project 274853, which is funded by the Research Council of Norway.","date_created":"2021-12-16T18:50:57Z","publication_identifier":{"issn":["2643-1564"]},"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}]},{"citation":{"ama":"Venturino A, Siegert S. Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain. <i>STAR Protocols</i>. 2021;2(4). doi:<a href=\"https://doi.org/10.1016/j.xpro.2021.101012\">10.1016/j.xpro.2021.101012</a>","ista":"Venturino A, Siegert S. 2021. Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain. STAR Protocols. 2(4), 101012.","ieee":"A. Venturino and S. Siegert, “Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain,” <i>STAR Protocols</i>, vol. 2, no. 4. Elsevier, 2021.","mla":"Venturino, Alessandro, and Sandra Siegert. “Minimally Invasive Protocols and Quantification for Microglia-Mediated Perineuronal Net Disassembly in Mouse Brain.” <i>STAR Protocols</i>, vol. 2, no. 4, 101012, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.xpro.2021.101012\">10.1016/j.xpro.2021.101012</a>.","chicago":"Venturino, Alessandro, and Sandra Siegert. “Minimally Invasive Protocols and Quantification for Microglia-Mediated Perineuronal Net Disassembly in Mouse Brain.” <i>STAR Protocols</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.xpro.2021.101012\">https://doi.org/10.1016/j.xpro.2021.101012</a>.","apa":"Venturino, A., &#38; Siegert, S. (2021). Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain. <i>STAR Protocols</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.xpro.2021.101012\">https://doi.org/10.1016/j.xpro.2021.101012</a>","short":"A. Venturino, S. Siegert, STAR Protocols 2 (2021)."},"has_accepted_license":"1","quality_controlled":"1","scopus_import":"1","article_number":"101012","author":[{"first_name":"Alessandro","orcid":"0000-0003-2356-9403","last_name":"Venturino","id":"41CB84B2-F248-11E8-B48F-1D18A9856A87","full_name":"Venturino, Alessandro"},{"id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","last_name":"Siegert","orcid":"0000-0001-8635-0877","first_name":"Sandra","full_name":"Siegert, Sandra"}],"_id":"10565","file_date_updated":"2021-12-20T08:58:40Z","publisher":"Elsevier","intvolume":"         2","type":"journal_article","year":"2021","publication":"STAR Protocols","project":[{"name":"Microglia action towards neuronal circuit formation and function in health and disease","_id":"25D4A630-B435-11E9-9278-68D0E5697425","grant_number":"715571","call_identifier":"H2020"}],"title":"Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain","article_type":"original","volume":2,"publication_identifier":{"eissn":["2666-1667"]},"acknowledged_ssus":[{"_id":"Bio"}],"acknowledgement":"This research was supported by the European Research Council (grant 715571 to S.S.). We thank Rouven Schulz, Michael Schunn, Claudia Gold, Gabriel Krens, Sarah Gorkiewicz, Margaret Maes, Jürgen Siegert, Marco Benevento, and Sara Oakeley for comments on the manuscript and the IST Austria Bioimaging Facility for the technical support.","date_created":"2021-12-19T23:01:32Z","article_processing_charge":"Yes","department":[{"_id":"SaSi"}],"issue":"4","date_updated":"2025-05-14T11:26:30Z","oa_version":"Published Version","oa":1,"language":[{"iso":"eng"}],"ec_funded":1,"day":"17","file":[{"file_name":"2021_STARProt_Venturino.pdf","file_size":6207060,"success":1,"file_id":"10570","date_created":"2021-12-20T08:58:40Z","checksum":"9ea2501056c5df99e84726b845e9b976","relation":"main_file","content_type":"application/pdf","date_updated":"2021-12-20T08:58:40Z","access_level":"open_access","creator":"cchlebak"}],"publication_status":"published","abstract":[{"lang":"eng","text":"Enzymatic digestion of the extracellular matrix with chondroitinase-ABC reinstates juvenile-like plasticity in the adult cortex as it also disassembles the perineuronal nets (PNNs). The disadvantage of the enzyme is that it must be applied intracerebrally and it degrades the ECM for several weeks. Here, we provide two minimally invasive and transient protocols for microglia-enabled PNN disassembly in mouse cortex: repeated treatment with ketamine-xylazine-acepromazine (KXA) anesthesia and 60-Hz light entrainment. We also discuss how to analyze PNNs within microglial endosomes-lysosomes. For complete details on the use and execution of this protocol, please refer to Venturino et al. (2021)."}],"ddc":["573"],"status":"public","date_published":"2021-12-17T00:00:00Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"12","doi":"10.1016/j.xpro.2021.101012","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"}]