[{"date_created":"2024-02-28T08:50:34Z","keyword":["Molecular Biology","Structural Biology"],"quality_controlled":"1","pmid":1,"external_id":{"pmid":["32910969"]},"issue":"21","ddc":["570"],"intvolume":" 432","language":[{"iso":"eng"}],"doi":"10.1016/j.jmb.2020.09.001","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.jmb.2020.09.001"}],"oa":1,"title":"Molecular recognition at septin interfaces: The switches hold the key","date_updated":"2026-06-18T17:44:49Z","publication":"Journal of Molecular Biology","citation":{"short":"H.V.D. Rosa, D.A. Leonardo, G. Brognara, J. Brandão-Neto, H. D’Muniz Pereira, A.P.U. Araújo, R.C. Garratt, Journal of Molecular Biology 432 (2020) 5784–5801.","ista":"Rosa HVD, Leonardo DA, Brognara G, Brandão-Neto J, D’Muniz Pereira H, Araújo APU, Garratt RC. 2020. Molecular recognition at septin interfaces: The switches hold the key. Journal of Molecular Biology. 432(21), 5784–5801.","ieee":"H. V. D. Rosa et al., “Molecular recognition at septin interfaces: The switches hold the key,” Journal of Molecular Biology, vol. 432, no. 21. Elsevier, pp. 5784–5801, 2020.","mla":"Rosa, Higor Vinícius Dias, et al. “Molecular Recognition at Septin Interfaces: The Switches Hold the Key.” Journal of Molecular Biology, vol. 432, no. 21, Elsevier, 2020, pp. 5784–801, doi:10.1016/j.jmb.2020.09.001.","ama":"Rosa HVD, Leonardo DA, Brognara G, et al. Molecular recognition at septin interfaces: The switches hold the key. Journal of Molecular Biology. 2020;432(21):5784-5801. doi:10.1016/j.jmb.2020.09.001","chicago":"Rosa, Higor Vinícius Dias, Diego Antonio Leonardo, Gabriel Brognara, José Brandão-Neto, Humberto D’Muniz Pereira, Ana Paula Ulian Araújo, and Richard Charles Garratt. “Molecular Recognition at Septin Interfaces: The Switches Hold the Key.” Journal of Molecular Biology. Elsevier, 2020. https://doi.org/10.1016/j.jmb.2020.09.001.","apa":"Rosa, H. V. D., Leonardo, D. A., Brognara, G., Brandão-Neto, J., D’Muniz Pereira, H., Araújo, A. P. U., & Garratt, R. C. (2020). Molecular recognition at septin interfaces: The switches hold the key. Journal of Molecular Biology. Elsevier. https://doi.org/10.1016/j.jmb.2020.09.001"},"volume":432,"_id":"15036","page":"5784-5801","month":"10","abstract":[{"text":"The assembly of a septin filament requires that homologous monomers must distinguish between one another in establishing appropriate interfaces with their neighbors. To understand this phenomenon at the molecular level, we present the first four crystal structures of heterodimeric septin complexes. We describe in detail the two distinct types of G-interface present within the octameric particles, which must polymerize to form filaments. These are formed between SEPT2 and SEPT6 and between SEPT7 and SEPT3, and their description permits an understanding of the structural basis for the selectivity necessary for correct filament assembly. By replacing SEPT6 by SEPT8 or SEPT11, it is possible to rationalize Kinoshita's postulate, which predicts the exchangeability of septins from within a subgroup. Switches I and II, which in classical small GTPases provide a mechanism for nucleotide-dependent conformational change, have been repurposed in septins to play a fundamental role in molecular recognition. Specifically, it is switch I which holds the key to discriminating between the two different G-interfaces. Moreover, residues which are characteristic for a given subgroup play subtle, but pivotal, roles in guaranteeing that the correct interfaces are formed.","lang":"eng"}],"article_processing_charge":"No","year":"2020","publisher":"Elsevier","publication_status":"published","status":"public","date_published":"2020-10-02T00:00:00Z","type":"journal_article","day":"02","publication_identifier":{"issn":["0022-2836"]},"oa_version":"Published Version","article_type":"original","department":[{"_id":"MaLo"}],"author":[{"last_name":"Rosa","full_name":"Rosa, Higor Vinícius Dias","first_name":"Higor Vinícius Dias"},{"last_name":"Leonardo","full_name":"Leonardo, Diego Antonio","first_name":"Diego Antonio"},{"id":"D96FFDA0-A884-11E9-9968-DC26E6697425","first_name":"Gabriel","last_name":"Brognara","full_name":"Brognara, Gabriel"},{"last_name":"Brandão-Neto","full_name":"Brandão-Neto, José","first_name":"José"},{"first_name":"Humberto","full_name":"D'Muniz Pereira, Humberto","last_name":"D'Muniz Pereira"},{"full_name":"Araújo, Ana Paula Ulian","last_name":"Araújo","first_name":"Ana Paula Ulian"},{"last_name":"Garratt","full_name":"Garratt, Richard Charles","first_name":"Richard Charles"}],"fulldoi":"https://doi.org/10.1016/j.jmb.2020.09.001"},{"doi":"10.1016/j.molp.2020.02.012","language":[{"iso":"eng"}],"intvolume":" 13","ddc":["580"],"issue":"5","pmid":1,"external_id":{"pmid":["32087370"]},"quality_controlled":"1","date_created":"2024-02-28T08:55:56Z","keyword":["Plant Science","Molecular Biology"],"page":"717-731","volume":13,"_id":"15037","citation":{"ama":"Moulinier-Anzola J, Schwihla M, De-Araújo L, et al. TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. 2020;13(5):717-731. doi:10.1016/j.molp.2020.02.012","chicago":"Moulinier-Anzola, Jeanette, Maximilian Schwihla, Lucinda De-Araújo, Christina Artner, Lisa Jörg, Nataliia Konstantinova, Christian Luschnig, and Barbara Korbei. “TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants.” Molecular Plant. Elsevier, 2020. https://doi.org/10.1016/j.molp.2020.02.012.","apa":"Moulinier-Anzola, J., Schwihla, M., De-Araújo, L., Artner, C., Jörg, L., Konstantinova, N., … Korbei, B. (2020). TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. Elsevier. https://doi.org/10.1016/j.molp.2020.02.012","short":"J. Moulinier-Anzola, M. Schwihla, L. De-Araújo, C. Artner, L. Jörg, N. Konstantinova, C. Luschnig, B. Korbei, Molecular Plant 13 (2020) 717–731.","ista":"Moulinier-Anzola J, Schwihla M, De-Araújo L, Artner C, Jörg L, Konstantinova N, Luschnig C, Korbei B. 2020. TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. 13(5), 717–731.","ieee":"J. Moulinier-Anzola et al., “TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants,” Molecular Plant, vol. 13, no. 5. Elsevier, pp. 717–731, 2020.","mla":"Moulinier-Anzola, Jeanette, et al. “TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants.” Molecular Plant, vol. 13, no. 5, Elsevier, 2020, pp. 717–31, doi:10.1016/j.molp.2020.02.012."},"file":[{"date_created":"2024-02-28T12:39:56Z","access_level":"open_access","date_updated":"2024-02-28T12:39:56Z","file_id":"15038","file_size":3089212,"file_name":"2020_MolecularPlant_MoulinierAnzola.pdf","relation":"main_file","content_type":"application/pdf","success":1,"creator":"dernst","checksum":"c538a5008f7827f62d17d40a3bfabe65"}],"publication":"Molecular Plant","date_updated":"2024-02-28T12:41:52Z","title":"TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","file_date_updated":"2024-02-28T12:39:56Z","date_published":"2020-05-04T00:00:00Z","status":"public","publication_status":"published","article_processing_charge":"No","year":"2020","publisher":"Elsevier","abstract":[{"lang":"eng","text":"Protein abundance and localization at the plasma membrane (PM) shapes plant development and mediates adaptation to changing environmental conditions. It is regulated by ubiquitination, a post-translational modification crucial for the proper sorting of endocytosed PM proteins to the vacuole for subsequent degradation. To understand the significance and the variety of roles played by this reversible modification, the function of ubiquitin receptors, which translate the ubiquitin signature into a cellular response, needs to be elucidated. In this study, we show that TOL (TOM1-like) proteins function in plants as multivalent ubiquitin receptors, governing ubiquitinated cargo delivery to the vacuole via the conserved Endosomal Sorting Complex Required for Transport (ESCRT) pathway. TOL2 and TOL6 interact with components of the ESCRT machinery and bind to K63-linked ubiquitin via two tandemly arranged conserved ubiquitin-binding domains. Mutation of these domains results not only in a loss of ubiquitin binding but also altered localization, abolishing TOL6 ubiquitin receptor activity. Function and localization of TOL6 is itself regulated by ubiquitination, whereby TOL6 ubiquitination potentially modulates degradation of PM-localized cargoes, assisting in the fine-tuning of the delicate interplay between protein recycling and downregulation. Taken together, our findings demonstrate the function and regulation of a ubiquitin receptor that mediates vacuolar degradation of PM proteins in higher plants."}],"month":"05","fulldoi":"https://doi.org/10.1016/j.molp.2020.02.012","author":[{"full_name":"Moulinier-Anzola, Jeanette","last_name":"Moulinier-Anzola","first_name":"Jeanette"},{"first_name":"Maximilian","full_name":"Schwihla, Maximilian","last_name":"Schwihla"},{"first_name":"Lucinda","last_name":"De-Araújo","full_name":"De-Araújo, Lucinda"},{"id":"45DF286A-F248-11E8-B48F-1D18A9856A87","first_name":"Christina","full_name":"Artner, Christina","last_name":"Artner"},{"full_name":"Jörg, Lisa","last_name":"Jörg","first_name":"Lisa"},{"last_name":"Konstantinova","full_name":"Konstantinova, Nataliia","first_name":"Nataliia"},{"full_name":"Luschnig, Christian","last_name":"Luschnig","first_name":"Christian"},{"first_name":"Barbara","last_name":"Korbei","full_name":"Korbei, Barbara"}],"department":[{"_id":"EvBe"}],"article_type":"original","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","publication_identifier":{"issn":["1674-2052"]},"has_accepted_license":"1","day":"04"},{"month":"04","conference":{"start_date":"2020-02-07","end_date":"2020-02-12","location":"New York, NY, United States","name":"AAAI: Conference on Artificial Intelligence"},"project":[{"call_identifier":"FWF","name":"Game Theory","_id":"25863FF4-B435-11E9-9278-68D0E5697425","grant_number":"S11407"}],"abstract":[{"lang":"eng","text":"Markov decision processes (MDPs) are the defacto framework for sequential decision making in the presence of stochastic uncertainty. A classical optimization criterion for MDPs is to maximize the expected discounted-sum payoff, which ignores low probability catastrophic events with highly negative impact on the system. On the other hand, risk-averse policies require the probability of undesirable events to be below a given threshold, but they do not account for optimization of the expected payoff. We consider MDPs with discounted-sum payoff with failure states which represent catastrophic outcomes. The objective of risk-constrained planning is to maximize the expected discounted-sum payoff among risk-averse policies that ensure the probability to encounter a failure state is below a desired threshold. Our main contribution is an efficient risk-constrained planning algorithm that combines UCT-like search with a predictor learned through interaction with the MDP (in the style of AlphaZero) and with a risk-constrained action selection via linear programming. We demonstrate the effectiveness of our approach with experiments on classical MDPs from the literature, including benchmarks with an order of 106 states."}],"year":"2020","article_processing_charge":"No","publisher":"Association for the Advancement of Artificial Intelligence","publication_status":"published","date_published":"2020-04-03T00:00:00Z","status":"public","type":"journal_article","day":"03","publication_identifier":{"issn":["2374-3468"]},"oa_version":"Preprint","article_type":"original","department":[{"_id":"KrCh"}],"author":[{"full_name":"Brázdil, Tomáš","last_name":"Brázdil","first_name":"Tomáš"},{"full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Petr","last_name":"Novotný","full_name":"Novotný, Petr"},{"first_name":"Jiří","last_name":"Vahala","full_name":"Vahala, Jiří"}],"fulldoi":"https://doi.org/10.1609/aaai.v34i06.6531","acknowledgement":"Krishnendu Chatterjee is supported by the Austrian Science Fund (FWF) NFN Grant No. S11407-N23 (RiSE/SHiNE), and COST Action GAMENET. Tomas Brazdil is supported by the Grant Agency of Masaryk University grant no. MUNI/G/0739/2017 and by the Czech Science Foundation grant No. 18-11193S. Petr Novotny and Jirı Vahala are supported by the Czech Science Foundation grant No. GJ19-15134Y.","date_created":"2024-03-04T08:07:22Z","keyword":["General Medicine"],"quality_controlled":"1","external_id":{"arxiv":["2002.12086"]},"issue":"06","intvolume":" 34","language":[{"iso":"eng"}],"doi":"10.1609/aaai.v34i06.6531","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2002.12086"}],"oa":1,"title":"Reinforcement learning of risk-constrained policies in Markov decision processes","date_updated":"2025-04-15T06:30:08Z","publication":"Proceedings of the 34th AAAI Conference on Artificial Intelligence","citation":{"ista":"Brázdil T, Chatterjee K, Novotný P, Vahala J. 2020. Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. 34(06), 9794–9801.","short":"T. Brázdil, K. Chatterjee, P. Novotný, J. Vahala, Proceedings of the 34th AAAI Conference on Artificial Intelligence 34 (2020) 9794–9801.","mla":"Brázdil, Tomáš, et al. “Reinforcement Learning of Risk-Constrained Policies in Markov Decision Processes.” Proceedings of the 34th AAAI Conference on Artificial Intelligence, vol. 34, no. 06, Association for the Advancement of Artificial Intelligence, 2020, pp. 9794–801, doi:10.1609/aaai.v34i06.6531.","ieee":"T. Brázdil, K. Chatterjee, P. Novotný, and J. Vahala, “Reinforcement learning of risk-constrained policies in Markov decision processes,” Proceedings of the 34th AAAI Conference on Artificial Intelligence, vol. 34, no. 06. Association for the Advancement of Artificial Intelligence, pp. 9794–9801, 2020.","chicago":"Brázdil, Tomáš, Krishnendu Chatterjee, Petr Novotný, and Jiří Vahala. “Reinforcement Learning of Risk-Constrained Policies in Markov Decision Processes.” Proceedings of the 34th AAAI Conference on Artificial Intelligence. Association for the Advancement of Artificial Intelligence, 2020. https://doi.org/10.1609/aaai.v34i06.6531.","ama":"Brázdil T, Chatterjee K, Novotný P, Vahala J. Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. 2020;34(06):9794-9801. doi:10.1609/aaai.v34i06.6531","apa":"Brázdil, T., Chatterjee, K., Novotný, P., & Vahala, J. (2020). Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. New York, NY, United States: Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v34i06.6531"},"arxiv":1,"volume":34,"_id":"15055","page":"9794-9801"},{"file_date_updated":"2024-03-04T09:46:41Z","type":"journal_article","publication_status":"published","date_published":"2020-07-01T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"Vaccinia virus–related kinase (VRK) is an evolutionarily conserved nuclear protein kinase. VRK-1, the single Caenorhabditis elegans VRK ortholog, functions in cell division and germline proliferation. However, the role of VRK-1 in postmitotic cells and adult life span remains unknown. Here, we show that VRK-1 increases organismal longevity by activating the cellular energy sensor, AMP-activated protein kinase (AMPK), via direct phosphorylation. We found that overexpression of vrk-1 in the soma of adult C. elegans increased life span and, conversely, inhibition of vrk-1 decreased life span. In addition, vrk-1 was required for longevity conferred by mutations that inhibit C. elegans mitochondrial respiration, which requires AMPK. VRK-1 directly phosphorylated and up-regulated AMPK in both C. elegans and cultured human cells. Thus, our data show that the somatic nuclear kinase, VRK-1, promotes longevity through AMPK activation, and this function appears to be conserved between C. elegans and humans."}],"year":"2020","article_processing_charge":"No","publisher":"American Association for the Advancement of Science","month":"07","fulldoi":"https://doi.org/10.1126/sciadv.aaw7824","article_type":"original","department":[{"_id":"MaDe"}],"author":[{"first_name":"Sangsoon","full_name":"Park, Sangsoon","last_name":"Park"},{"orcid":"0000-0001-8945-6992","first_name":"Murat","id":"C407B586-6052-11E9-B3AE-7006E6697425","last_name":"Artan","full_name":"Artan, Murat"},{"full_name":"Han, Seung Hyun","last_name":"Han","first_name":"Seung Hyun"},{"last_name":"Park","full_name":"Park, Hae-Eun H.","first_name":"Hae-Eun H."},{"first_name":"Yoonji","full_name":"Jung, Yoonji","last_name":"Jung"},{"last_name":"Hwang","full_name":"Hwang, Ara B.","first_name":"Ara B."},{"last_name":"Shin","full_name":"Shin, Won Sik","first_name":"Won Sik"},{"last_name":"Kim","full_name":"Kim, Kyong-Tai","first_name":"Kyong-Tai"},{"last_name":"Lee","full_name":"Lee, Seung-Jae V.","first_name":"Seung-Jae V."}],"publication_identifier":{"eissn":["2375-2548"]},"oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)"},"has_accepted_license":"1","day":"01","language":[{"iso":"eng"}],"doi":"10.1126/sciadv.aaw7824","ddc":["570"],"intvolume":" 6","article_number":"aaw7824","issue":"27","acknowledgement":"This research was supported by grants NRF-2019R1A3B2067745 and NRF-2017R1A5A1015366 funded by the Korean Government (MSIT) through the National Research Foundation (NRF) of Korea to S.-J.V.L. and by grant Basic Science Research Program (No. 2019R1A2C2009440) funded by the Korean Government (MSIT) through the NRF of Korea to K.-T.K. ","date_created":"2024-03-04T09:41:57Z","quality_controlled":"1","volume":6,"_id":"15057","publication":"Science Advances","citation":{"mla":"Park, Sangsoon, et al. “VRK-1 Extends Life Span by Activation of AMPK via Phosphorylation.” Science Advances, vol. 6, no. 27, aaw7824, American Association for the Advancement of Science, 2020, doi:10.1126/sciadv.aaw7824.","ieee":"S. Park et al., “VRK-1 extends life span by activation of AMPK via phosphorylation,” Science Advances, vol. 6, no. 27. American Association for the Advancement of Science, 2020.","ista":"Park S, Artan M, Han SH, Park H-EH, Jung Y, Hwang AB, Shin WS, Kim K-T, Lee S-JV. 2020. VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. 6(27), aaw7824.","short":"S. Park, M. Artan, S.H. Han, H.-E.H. Park, Y. Jung, A.B. Hwang, W.S. Shin, K.-T. Kim, S.-J.V. Lee, Science Advances 6 (2020).","apa":"Park, S., Artan, M., Han, S. H., Park, H.-E. H., Jung, Y., Hwang, A. B., … Lee, S.-J. V. (2020). VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.aaw7824","chicago":"Park, Sangsoon, Murat Artan, Seung Hyun Han, Hae-Eun H. Park, Yoonji Jung, Ara B. Hwang, Won Sik Shin, Kyong-Tai Kim, and Seung-Jae V. Lee. “VRK-1 Extends Life Span by Activation of AMPK via Phosphorylation.” Science Advances. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/sciadv.aaw7824.","ama":"Park S, Artan M, Han SH, et al. VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. 2020;6(27). doi:10.1126/sciadv.aaw7824"},"file":[{"date_created":"2024-03-04T09:46:41Z","access_level":"open_access","date_updated":"2024-03-04T09:46:41Z","file_size":1864415,"file_id":"15058","file_name":"2020_ScienceAdvances_Park.pdf","content_type":"application/pdf","relation":"main_file","success":1,"creator":"dernst","checksum":"a37157cd0de709dce5fe03f4a31cd0b6"}],"title":"VRK-1 extends life span by activation of AMPK via phosphorylation","oa":1,"date_updated":"2024-03-04T09:52:09Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"doi":"10.23919/eucap48036.2020.9135962","type":"conference","language":[{"iso":"eng"}],"date_published":"2020-07-08T00:00:00Z","status":"public","publication_status":"published","article_processing_charge":"No","year":"2020","publisher":"IEEE","conference":{"location":"Copenhagen, Denmark","end_date":"2020-03-20","start_date":"2020-03-15","name":"EuCAP: European Conference on Antennas and Propagation"},"abstract":[{"text":"In this paper we present a room temperature radiometer that can eliminate the need of using cryostats in satellite payload reducing its weight and improving reliability. The proposed radiometer is based on an electro-optic upconverter that boosts up microwave photons energy by upconverting them into an optical domain what makes them immune to thermal noise even if operating at room temperature. The converter uses a high-quality factor whispering gallery\r\nmode (WGM) resonator providing naturally narrow bandwidth and therefore might be useful for applications like microwave hyperspectral sensing. The upconversion process is explained by\r\nproviding essential information about photon conversion efficiency and sensitivity. To prove the concept, we describe an experiment which shows state-of-the-art photon conversion efficiency n=10-5 per mW of pump power at the frequency of 80 GHz.","lang":"eng"}],"month":"07","quality_controlled":"1","acknowledgement":"This work has been financially supported by Comunidad de Madrid S2018/NMT-4333 ARTINLARA-CM projects, and “FUNDACIÓN SENER” REFTA projects.","date_created":"2024-03-04T09:57:48Z","fulldoi":"https://doi.org/10.23919/eucap48036.2020.9135962","_id":"15059","citation":{"ista":"Wasiak M, Botello GS, Abdalmalak KA, Sedlmeir F, Rueda Sanchez AR, Segovia-Vargas D, Schwefel HGL, Munoz LEG. 2020. Compact millimeter and submillimeter-wave photonic radiometer for cubesats. 14th European Conference on Antennas and Propagation. EuCAP: European Conference on Antennas and Propagation.","short":"M. Wasiak, G.S. Botello, K.A. Abdalmalak, F. Sedlmeir, A.R. Rueda Sanchez, D. Segovia-Vargas, H.G.L. Schwefel, L.E.G. Munoz, in:, 14th European Conference on Antennas and Propagation, IEEE, 2020.","mla":"Wasiak, Michal, et al. “Compact Millimeter and Submillimeter-Wave Photonic Radiometer for Cubesats.” 14th European Conference on Antennas and Propagation, IEEE, 2020, doi:10.23919/eucap48036.2020.9135962.","ieee":"M. Wasiak et al., “Compact millimeter and submillimeter-wave photonic radiometer for cubesats,” in 14th European Conference on Antennas and Propagation, Copenhagen, Denmark, 2020.","chicago":"Wasiak, Michal, Gabriel Santamaria Botello, Kerlos Atia Abdalmalak, Florian Sedlmeir, Alfredo R Rueda Sanchez, Daniel Segovia-Vargas, Harald G. L. Schwefel, and Luis Enrique Garcia Munoz. “Compact Millimeter and Submillimeter-Wave Photonic Radiometer for Cubesats.” In 14th European Conference on Antennas and Propagation. IEEE, 2020. https://doi.org/10.23919/eucap48036.2020.9135962.","ama":"Wasiak M, Botello GS, Abdalmalak KA, et al. Compact millimeter and submillimeter-wave photonic radiometer for cubesats. In: 14th European Conference on Antennas and Propagation. IEEE; 2020. doi:10.23919/eucap48036.2020.9135962","apa":"Wasiak, M., Botello, G. S., Abdalmalak, K. A., Sedlmeir, F., Rueda Sanchez, A. R., Segovia-Vargas, D., … Munoz, L. E. G. (2020). Compact millimeter and submillimeter-wave photonic radiometer for cubesats. In 14th European Conference on Antennas and Propagation. Copenhagen, Denmark: IEEE. https://doi.org/10.23919/eucap48036.2020.9135962"},"department":[{"_id":"JoFi"}],"author":[{"first_name":"Michal","last_name":"Wasiak","full_name":"Wasiak, Michal"},{"last_name":"Botello","full_name":"Botello, Gabriel Santamaria","first_name":"Gabriel Santamaria"},{"full_name":"Abdalmalak, Kerlos Atia","last_name":"Abdalmalak","first_name":"Kerlos Atia"},{"first_name":"Florian","last_name":"Sedlmeir","full_name":"Sedlmeir, Florian"},{"last_name":"Rueda Sanchez","full_name":"Rueda Sanchez, Alfredo R","id":"3B82B0F8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6249-5860","first_name":"Alfredo R"},{"last_name":"Segovia-Vargas","full_name":"Segovia-Vargas, Daniel","first_name":"Daniel"},{"first_name":"Harald G. L.","last_name":"Schwefel","full_name":"Schwefel, Harald G. L."},{"first_name":"Luis Enrique Garcia","last_name":"Munoz","full_name":"Munoz, Luis Enrique Garcia"}],"publication":"14th European Conference on Antennas and Propagation","oa_version":"None","date_updated":"2024-03-04T10:02:49Z","title":"Compact millimeter and submillimeter-wave photonic radiometer for cubesats","publication_identifier":{"eisbn":["9788831299008"]},"day":"08","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"author":[{"first_name":"Nikos","last_name":"Pinotsis","full_name":"Pinotsis, Nikos"},{"full_name":"Zielinska, Karolina","last_name":"Zielinska","first_name":"Karolina"},{"first_name":"Mrigya","full_name":"Babuta, Mrigya","last_name":"Babuta"},{"full_name":"Arolas, Joan L.","last_name":"Arolas","first_name":"Joan L."},{"last_name":"Kostan","full_name":"Kostan, Julius","first_name":"Julius"},{"first_name":"Muhammad Bashir","full_name":"Khan, Muhammad Bashir","last_name":"Khan"},{"last_name":"Schreiner","full_name":"Schreiner, Claudia","first_name":"Claudia"},{"id":"41F1F098-F248-11E8-B48F-1D18A9856A87","first_name":"Anita P","last_name":"Testa Salmazo","full_name":"Testa Salmazo, Anita P"},{"first_name":"Luciano","last_name":"Ciccarelli","full_name":"Ciccarelli, Luciano"},{"first_name":"Martin","last_name":"Puchinger","full_name":"Puchinger, Martin"},{"first_name":"Eirini A.","last_name":"Gkougkoulia","full_name":"Gkougkoulia, Eirini A."},{"first_name":"Euripedes de Almeida","last_name":"Ribeiro","full_name":"Ribeiro, Euripedes de Almeida"},{"full_name":"Marlovits, Thomas C.","last_name":"Marlovits","first_name":"Thomas C."},{"first_name":"Alok","full_name":"Bhattacharya, Alok","last_name":"Bhattacharya"},{"first_name":"Kristina","last_name":"Djinovic-Carugo","full_name":"Djinovic-Carugo, Kristina"}],"department":[{"_id":"CaBe"}],"article_type":"original","fulldoi":"https://doi.org/10.1073/pnas.1917269117","day":"08","oa_version":"Published Version","publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"status":"public","date_published":"2020-09-08T00:00:00Z","publication_status":"published","type":"journal_article","month":"09","publisher":"National Academy of Sciences","year":"2020","article_processing_charge":"No","abstract":[{"text":"The actin cytoskeleton, a dynamic network of actin filaments and associated F-actin–binding proteins, is fundamentally important in eukaryotes. α-Actinins are major F-actin bundlers that are inhibited by Ca2+ in nonmuscle cells. Here we report the mechanism of Ca2+-mediated regulation of Entamoeba histolytica α-actinin-2 (EhActn2) with features expected for the common ancestor of Entamoeba and higher eukaryotic α-actinins. Crystal structures of Ca2+-free and Ca2+-bound EhActn2 reveal a calmodulin-like domain (CaMD) uniquely inserted within the rod domain. Integrative studies reveal an exceptionally high affinity of the EhActn2 CaMD for Ca2+, binding of which can only be regulated in the presence of physiological concentrations of Mg2+. Ca2+ binding triggers an increase in protein multidomain rigidity, reducing conformational flexibility of F-actin–binding domains via interdomain cross-talk and consequently inhibiting F-actin bundling. In vivo studies uncover that EhActn2 plays an important role in phagocytic cup formation and might constitute a new drug target for amoebic dysentery.","lang":"eng"}],"citation":{"ista":"Pinotsis N, Zielinska K, Babuta M, Arolas JL, Kostan J, Khan MB, Schreiner C, Testa Salmazo AP, Ciccarelli L, Puchinger M, Gkougkoulia EA, Ribeiro E de A, Marlovits TC, Bhattacharya A, Djinovic-Carugo K. 2020. Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin. Proceedings of the National Academy of Sciences of the United States of America. 117(36), 22101–22112.","short":"N. Pinotsis, K. Zielinska, M. Babuta, J.L. Arolas, J. Kostan, M.B. Khan, C. Schreiner, A.P. Testa Salmazo, L. Ciccarelli, M. Puchinger, E.A. Gkougkoulia, E. de A. Ribeiro, T.C. Marlovits, A. Bhattacharya, K. Djinovic-Carugo, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 22101–22112.","ieee":"N. Pinotsis et al., “Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin,” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 36. National Academy of Sciences, pp. 22101–22112, 2020.","mla":"Pinotsis, Nikos, et al. “Calcium Modulates the Domain Flexibility and Function of an α-Actinin Similar to the Ancestral α-Actinin.” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 36, National Academy of Sciences, 2020, pp. 22101–12, doi:10.1073/pnas.1917269117.","chicago":"Pinotsis, Nikos, Karolina Zielinska, Mrigya Babuta, Joan L. Arolas, Julius Kostan, Muhammad Bashir Khan, Claudia Schreiner, et al. “Calcium Modulates the Domain Flexibility and Function of an α-Actinin Similar to the Ancestral α-Actinin.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2020. https://doi.org/10.1073/pnas.1917269117.","ama":"Pinotsis N, Zielinska K, Babuta M, et al. Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin. Proceedings of the National Academy of Sciences of the United States of America. 2020;117(36):22101-22112. doi:10.1073/pnas.1917269117","apa":"Pinotsis, N., Zielinska, K., Babuta, M., Arolas, J. L., Kostan, J., Khan, M. B., … Djinovic-Carugo, K. (2020). Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.1917269117"},"publication":"Proceedings of the National Academy of Sciences of the United States of America","page":"22101-22112","_id":"15061","volume":117,"main_file_link":[{"url":"https://doi.org/10.1073/pnas.191726911","open_access":"1"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-06-18T17:45:21Z","acknowledged_ssus":[{"_id":"LifeSc"}],"title":"Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin","oa":1,"intvolume":" 117","ddc":["570"],"doi":"10.1073/pnas.1917269117","language":[{"iso":"eng"}],"quality_controlled":"1","date_created":"2024-03-04T10:03:52Z","acknowledgement":"We thank the staff of the macromolecular crystallography (MX) and SAXS beamlines at the European Synchrotron Radiation facility, Diamond, and Swiss Light Source for excellent support, and the Life Sciences Facility of the Institute of Science and Technology Austria for usage of the rheometer. We thank Life Sciences editors for editing assistance. EM data were\r\nrecorded at the EM Facility of the Vienna BioCenter Core Facilities (Austria). Confocal microscopy was carried out at the Advanced Instrument Research Facility, Jawaharlal Nehru University. K.D.-C.’s research was supported by the Initial Training Network MUZIC (ITN-MUZIC) (N°238423), Austrian Science Fund (FWF) Projects I525, I1593, P22276, P19060, and W1221, Laura Bassi Centre of Optimized Structural Studies (N°253275), a Wellcome Trust Collaborative Award (201543/Z/16/Z), COST Action BM1405, Vienna Science and Technology Fund (WWTF) Chemical Biology Project LS17-008, and Christian Doppler Laboratory for High-Content Structural Biology and Biotechnology. K.Z., J.L.A., C.S., E.A.G., and A.S. were supported by the University of Vienna, J.K. by a Wellcome Trust Collaborative Award and by the Centre of Optimized Structural Studies, M.P. by FWF Project I1593, E.d.A.R. ITN-MUZIC, and FWF Projects I525 and I1593, and T.C.M. and L.C. by FWF Project I 2408-B22. E.A.G. acknowledges the PhD program Structure and Interaction of Biological Macromolecules. M.B. acknowledges the University Grant Commission, India, for a senior research fellowship. A.B. acknowledges a JC Bose Fellowship from the Science Engineering Research Council. ","issue":"36","external_id":{"pmid":["32848067"]},"pmid":1},{"corr_author":"1","fulldoi":"https://doi.org/10.2140/pmp.2020.1.101","ec_funded":1,"author":[{"full_name":"Cipolloni, Giorgio","last_name":"Cipolloni","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","first_name":"Giorgio","orcid":"0000-0002-4901-7992"},{"id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László","orcid":"0000-0001-5366-9603","full_name":"Erdös, László","last_name":"Erdös"},{"first_name":"Dominik J","orcid":"0000-0002-2904-1856","id":"408ED176-F248-11E8-B48F-1D18A9856A87","full_name":"Schröder, Dominik J","last_name":"Schröder"}],"department":[{"_id":"LaEr"}],"article_type":"original","oa_version":"Preprint","publication_identifier":{"issn":["2690-0998"]},"day":"16","type":"journal_article","status":"public","date_published":"2020-11-16T00:00:00Z","publication_status":"published","year":"2020","article_processing_charge":"No","publisher":"Mathematical Sciences Publishers","project":[{"grant_number":"338804","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7","_id":"258DCDE6-B435-11E9-9278-68D0E5697425"},{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program"}],"abstract":[{"text":"We consider the least singular value of a large random matrix with real or complex i.i.d. Gaussian entries shifted by a constant z∈C. We prove an optimal lower tail estimate on this singular value in the critical regime where z is around the spectral edge, thus improving the classical bound of Sankar, Spielman and Teng (SIAM J. Matrix Anal. Appl. 28:2 (2006), 446–476) for the particular shift-perturbation in the edge regime. Lacking Brézin–Hikami formulas in the real case, we rely on the superbosonization formula (Comm. Math. Phys. 283:2 (2008), 343–395).","lang":"eng"}],"month":"11","page":"101-146","volume":1,"_id":"15063","arxiv":1,"citation":{"ama":"Cipolloni G, Erdös L, Schröder DJ. Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. 2020;1(1):101-146. doi:10.2140/pmp.2020.1.101","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Optimal Lower Bound on the Least Singular Value of the Shifted Ginibre Ensemble.” Probability and Mathematical Physics. Mathematical Sciences Publishers, 2020. https://doi.org/10.2140/pmp.2020.1.101.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2020). Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. Mathematical Sciences Publishers. https://doi.org/10.2140/pmp.2020.1.101","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Probability and Mathematical Physics 1 (2020) 101–146.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2020. Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. 1(1), 101–146.","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Optimal lower bound on the least singular value of the shifted Ginibre ensemble,” Probability and Mathematical Physics, vol. 1, no. 1. Mathematical Sciences Publishers, pp. 101–146, 2020.","mla":"Cipolloni, Giorgio, et al. “Optimal Lower Bound on the Least Singular Value of the Shifted Ginibre Ensemble.” Probability and Mathematical Physics, vol. 1, no. 1, Mathematical Sciences Publishers, 2020, pp. 101–46, doi:10.2140/pmp.2020.1.101."},"publication":"Probability and Mathematical Physics","scopus_import":"1","date_updated":"2025-07-10T11:51:06Z","oa":1,"title":"Optimal lower bound on the least singular value of the shifted Ginibre ensemble","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1908.01653"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.2140/pmp.2020.1.101","language":[{"iso":"eng"}],"intvolume":" 1","issue":"1","external_id":{"arxiv":["1908.01653"]},"quality_controlled":"1","date_created":"2024-03-04T10:27:57Z","acknowledgement":"Partially supported by ERC Advanced Grant No. 338804. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 66538","keyword":["General Medicine"]},{"publication":"Journal of Applied and Computational Topology","citation":{"ista":"Bauer U, Edelsbrunner H, Jablonski G, Mrozek M. 2020. Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. 4(4), 455–480.","short":"U. Bauer, H. Edelsbrunner, G. Jablonski, M. Mrozek, Journal of Applied and Computational Topology 4 (2020) 455–480.","mla":"Bauer, U., et al. “Čech-Delaunay Gradient Flow and Homology Inference for Self-Maps.” Journal of Applied and Computational Topology, vol. 4, no. 4, Springer Nature, 2020, pp. 455–80, doi:10.1007/s41468-020-00058-8.","ieee":"U. Bauer, H. Edelsbrunner, G. Jablonski, and M. Mrozek, “Čech-Delaunay gradient flow and homology inference for self-maps,” Journal of Applied and Computational Topology, vol. 4, no. 4. Springer Nature, pp. 455–480, 2020.","chicago":"Bauer, U., Herbert Edelsbrunner, Grzegorz Jablonski, and M. Mrozek. “Čech-Delaunay Gradient Flow and Homology Inference for Self-Maps.” Journal of Applied and Computational Topology. Springer Nature, 2020. https://doi.org/10.1007/s41468-020-00058-8.","ama":"Bauer U, Edelsbrunner H, Jablonski G, Mrozek M. Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. 2020;4(4):455-480. doi:10.1007/s41468-020-00058-8","apa":"Bauer, U., Edelsbrunner, H., Jablonski, G., & Mrozek, M. (2020). Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-020-00058-8"},"file":[{"date_created":"2024-03-04T10:52:42Z","access_level":"open_access","file_size":851190,"file_id":"15065","content_type":"application/pdf","relation":"main_file","file_name":"2020_JourApplCompTopology_Bauer.pdf","date_updated":"2024-03-04T10:52:42Z","success":1,"checksum":"eed1168b6e66cd55272c19bb7fca8a1c","creator":"dernst"}],"volume":4,"_id":"15064","page":"455-480","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Čech-Delaunay gradient flow and homology inference for self-maps","oa":1,"date_updated":"2024-03-04T10:54:04Z","scopus_import":"1","ddc":["500"],"intvolume":" 4","language":[{"iso":"eng"}],"doi":"10.1007/s41468-020-00058-8","date_created":"2024-03-04T10:47:49Z","acknowledgement":"This research has been supported by the DFG Collaborative Research Center SFB/TRR 109 “Discretization in Geometry and Dynamics”, by Polish MNiSzW Grant No. 2621/7.PR/12/2013/2, by the Polish National Science Center under Maestro Grant No. 2014/14/A/ST1/00453 and Grant No. DEC-2013/09/N/ST6/02995. Open Access funding provided by Projekt DEAL.","quality_controlled":"1","issue":"4","article_type":"original","author":[{"first_name":"U.","full_name":"Bauer, U.","last_name":"Bauer"},{"last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","first_name":"Herbert","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"id":"4483EF78-F248-11E8-B48F-1D18A9856A87","first_name":"Grzegorz","orcid":"0000-0002-3536-9866","last_name":"Jablonski","full_name":"Jablonski, Grzegorz"},{"last_name":"Mrozek","full_name":"Mrozek, M.","first_name":"M."}],"department":[{"_id":"HeEd"}],"fulldoi":"https://doi.org/10.1007/s41468-020-00058-8","day":"01","has_accepted_license":"1","publication_identifier":{"issn":["2367-1726"],"eissn":["2367-1734"]},"oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","status":"public","date_published":"2020-12-01T00:00:00Z","file_date_updated":"2024-03-04T10:52:42Z","type":"journal_article","month":"12","abstract":[{"lang":"eng","text":"We call a continuous self-map that reveals itself through a discrete set of point-value pairs a sampled dynamical system. Capturing the available information with chain maps on Delaunay complexes, we use persistent homology to quantify the evidence of recurrent behavior. We establish a sampling theorem to recover the eigenspaces of the endomorphism on homology induced by the self-map. Using a combinatorial gradient flow arising from the discrete Morse theory for Čech and Delaunay complexes, we construct a chain map to transform the problem from the natural but expensive Čech complexes to the computationally efficient Delaunay triangulations. The fast chain map algorithm has applications beyond dynamical systems."}],"publisher":"Springer Nature","article_processing_charge":"Yes (via OA deal)","year":"2020"},{"oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"day":"02","has_accepted_license":"1","fulldoi":"https://doi.org/10.3390/ecm2020-07116","department":[{"_id":"FyKo"}],"author":[{"full_name":"Oshurkova, Viktoriia","last_name":"Oshurkova","first_name":"Viktoriia"},{"first_name":"Olga","last_name":"Troshina","full_name":"Troshina, Olga"},{"first_name":"Vladimir","last_name":"Trubitsyn","full_name":"Trubitsyn, Vladimir"},{"last_name":"Ryzhmanova","full_name":"Ryzhmanova, Yana","first_name":"Yana"},{"first_name":"Olga","orcid":"0000-0003-1006-6639","id":"C4558D3C-6102-11E9-A62E-F418E6697425","last_name":"Bochkareva","full_name":"Bochkareva, Olga"},{"first_name":"Viktoria","full_name":"Shcherbakova, Viktoria","last_name":"Shcherbakova"}],"publisher":"MDPI","year":"2020","article_processing_charge":"Yes","abstract":[{"text":"A mesophilic methanogenic culture, designated JL01, was isolated from Holocene permafrost in the Russian Arctic [1]. After long-term extensive cultivation at 15°C it turned out to be a tied binary culture of archaeal (JL01) and bacterial (Sphaerochaeta associata GLS2) strains.\r\nStrain JL01 was a strict anaerobe and grew on methanol, acetate and methylamines as energy and carbon sources. Cells were irregular coccoid, non-motile, non-spore-forming, and Gram-stainpositive. Optimum conditions for growth were 24-28 oC, pH 6.8–7.3 and 0.075-0.1 M NaCl.\r\nPhylogenetic tree reconstructions based on 16S rRNA and concatenated alignment of broadly\r\nconserved protein-coding genes revealed its close relation to Methanosarcina mazei S-6\r\nT (similarity 99.5%). The comparison of whole genomic sequences (ANI) of the isolate and the type strain of M.mazei was 98.5%, which is higher than the values recommended for new species. Thus strain JL01 (=VKM B-2370=JCM 31898) represents the first M. mazei isolated from permanently subzero Arcticsediments. The long-term co-cultivation of JL01 with S. associata GLS2T showed the methane production without any additional carbon and energy sources. Genome analysis of S. associata GLS2T revealed putative genes involved in methanochondroithin catabolism.","lang":"eng"}],"conference":{"name":"ECM: Electronic Conference on Microbiology","location":"Virtual","start_date":"2020-11-02","end_date":"2020-11-30"},"month":"11","type":"conference","file_date_updated":"2024-03-20T08:05:46Z","status":"public","date_published":"2020-11-02T00:00:00Z","publication_status":"published","date_updated":"2024-03-20T08:06:22Z","title":"Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"15071","citation":{"mla":"Oshurkova, Viktoriia, et al. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” Proceedings of 1st International Electronic Conference on Microbiology, MDPI, 2020, doi:10.3390/ecm2020-07116.","ieee":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, and V. Shcherbakova, “Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T,” in Proceedings of 1st International Electronic Conference on Microbiology, Virtual, 2020.","short":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, V. Shcherbakova, in:, Proceedings of 1st International Electronic Conference on Microbiology, MDPI, 2020.","ista":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. 2020. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. Proceedings of 1st International Electronic Conference on Microbiology. ECM: Electronic Conference on Microbiology.","apa":"Oshurkova, V., Troshina, O., Trubitsyn, V., Ryzhmanova, Y., Bochkareva, O., & Shcherbakova, V. (2020). Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In Proceedings of 1st International Electronic Conference on Microbiology. Virtual: MDPI. https://doi.org/10.3390/ecm2020-07116","ama":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In: Proceedings of 1st International Electronic Conference on Microbiology. MDPI; 2020. doi:10.3390/ecm2020-07116","chicago":"Oshurkova, Viktoriia, Olga Troshina, Vladimir Trubitsyn, Yana Ryzhmanova, Olga Bochkareva, and Viktoria Shcherbakova. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” In Proceedings of 1st International Electronic Conference on Microbiology. MDPI, 2020. https://doi.org/10.3390/ecm2020-07116."},"file":[{"access_level":"open_access","date_created":"2024-03-20T08:05:46Z","date_updated":"2024-03-20T08:05:46Z","relation":"main_file","file_name":"2020_ECM_Oshurkova.pdf","content_type":"application/pdf","file_size":595543,"file_id":"15127","success":1,"creator":"dernst","checksum":"d1914af7811a21a4b2744eb51b5834e3"}],"publication":"Proceedings of 1st International Electronic Conference on Microbiology","quality_controlled":"1","acknowledgement":"The work was supported by of Russian Foundation of Basic Research: grant № 19-04-00831 for Viktoria Shcherbakova and Olga Troshina, grant № 18-34-00334 for Viktoriia Oshurkova and Vladimir Trubitsyn. \r\nWe thank Dr Natalia Suzina (IBPM RAS, Federal Research Center Pushchino Center for\r\nBiological Research RAS) for the help with the microscopic studies, respectively; Dr. Margarita Meyer (Division of Genetics, Department of Medicine, BWH and HMS, USA) and Dr Fedor Kondrashov (IST, Austria) for their help in obtaining the genomic sequence of strain JL01. ","date_created":"2024-03-04T11:41:31Z","doi":"10.3390/ecm2020-07116","language":[{"iso":"eng"}],"ddc":["570"]},{"publication":"47th International Colloquium on Automata, Languages, and Programming","file":[{"success":1,"creator":"dernst","checksum":"e5eb16199f4ccfd77a321977eb3f026f","access_level":"open_access","date_created":"2024-03-05T07:25:15Z","date_updated":"2024-03-05T07:25:15Z","file_name":"2020_LIPIcs_Alistarh.pdf","content_type":"application/pdf","relation":"main_file","file_size":782987,"file_id":"15078"}],"arxiv":1,"citation":{"apa":"Alistarh, D.-A., Nadiradze, G., & Sabour, A. (2020). Dynamic averaging load balancing on cycles. In 47th International Colloquium on Automata, Languages, and Programming (Vol. 168). Saarbrücken, Germany, Virtual: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.ICALP.2020.7","ama":"Alistarh D-A, Nadiradze G, Sabour A. Dynamic averaging load balancing on cycles. In: 47th International Colloquium on Automata, Languages, and Programming. Vol 168. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020. doi:10.4230/LIPIcs.ICALP.2020.7","chicago":"Alistarh, Dan-Adrian, Giorgi Nadiradze, and Amirmojtaba Sabour. “Dynamic Averaging Load Balancing on Cycles.” In 47th International Colloquium on Automata, Languages, and Programming, Vol. 168. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. https://doi.org/10.4230/LIPIcs.ICALP.2020.7.","ieee":"D.-A. Alistarh, G. Nadiradze, and A. Sabour, “Dynamic averaging load balancing on cycles,” in 47th International Colloquium on Automata, Languages, and Programming, Saarbrücken, Germany, Virtual, 2020, vol. 168.","mla":"Alistarh, Dan-Adrian, et al. “Dynamic Averaging Load Balancing on Cycles.” 47th International Colloquium on Automata, Languages, and Programming, vol. 168, 7, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, doi:10.4230/LIPIcs.ICALP.2020.7.","short":"D.-A. Alistarh, G. Nadiradze, A. Sabour, in:, 47th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020.","ista":"Alistarh D-A, Nadiradze G, Sabour A. 2020. Dynamic averaging load balancing on cycles. 47th International Colloquium on Automata, Languages, and Programming. ICALP: Automata, Languages and Programming, LIPIcs, vol. 168, 7."},"volume":168,"_id":"15077","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"Dynamic averaging load balancing on cycles","license":"https://creativecommons.org/licenses/by/3.0/","scopus_import":"1","date_updated":"2025-07-10T11:55:11Z","ddc":["000"],"intvolume":" 168","language":[{"iso":"eng"}],"doi":"10.4230/LIPIcs.ICALP.2020.7","date_created":"2024-03-05T07:25:37Z","acknowledgement":"The authors sincerely thank Thomas Sauerwald and George Giakkoupis for insightful discussions, and Mohsen Ghaffari, Yuval Peres, and Udi Wieder for feedback on earlier\r\nversions of this draft. We also thank the ICALP anonymous reviewers for their very useful comments.\r\nFunding: European Research Council funding award PR1042ERC01","quality_controlled":"1","external_id":{"arxiv":["2003.09297"]},"article_number":"7","alternative_title":["LIPIcs"],"related_material":{"record":[{"relation":"later_version","id":"8286","status":"public"}]},"author":[{"last_name":"Alistarh","full_name":"Alistarh, Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X","first_name":"Dan-Adrian"},{"last_name":"Nadiradze","full_name":"Nadiradze, Giorgi","orcid":"0000-0001-5634-0731","first_name":"Giorgi","id":"3279A00C-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Amirmojtaba","id":"bcc145fd-e77f-11ea-ae8b-80d661dbff67","full_name":"Sabour, Amirmojtaba","last_name":"Sabour"}],"department":[{"_id":"DaAl"}],"ec_funded":1,"corr_author":"1","fulldoi":"https://doi.org/10.4230/LIPIcs.ICALP.2020.7","day":"29","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","short":"CC BY (3.0)","legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode"},"oa_version":"Published Version","publication_status":"published","status":"public","date_published":"2020-06-29T00:00:00Z","file_date_updated":"2024-03-05T07:25:15Z","type":"conference","month":"06","conference":{"location":"Saarbrücken, Germany, Virtual","end_date":"2020-07-11","start_date":"2020-07-08","name":"ICALP: Automata, Languages and Programming"},"project":[{"grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425","name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020"}],"abstract":[{"text":"We consider the following dynamic load-balancing process: given an underlying graph G with n nodes, in each step t≥ 0, one unit of load is created, and placed at a randomly chosen graph node. In the same step, the chosen node picks a random neighbor, and the two nodes balance their loads by averaging them. We are interested in the expected gap between the minimum and maximum loads at nodes as the process progresses, and its dependence on n and on the graph structure. Variants of the above graphical balanced allocation process have been studied previously by Peres, Talwar, and Wieder [Peres et al., 2015], and by Sauerwald and Sun [Sauerwald and Sun, 2015]. These authors left as open the question of characterizing the gap in the case of cycle graphs in the dynamic case, where weights are created during the algorithm’s execution. For this case, the only known upper bound is of 𝒪(n log n), following from a majorization argument due to [Peres et al., 2015], which analyzes a related graphical allocation process. In this paper, we provide an upper bound of 𝒪 (√n log n) on the expected gap of the above process for cycles of length n. We introduce a new potential analysis technique, which enables us to bound the difference in load between k-hop neighbors on the cycle, for any k ≤ n/2. We complement this with a \"gap covering\" argument, which bounds the maximum value of the gap by bounding its value across all possible subsets of a certain structure, and recursively bounding the gaps within each subset. We provide analytical and experimental evidence that our upper bound on the gap is tight up to a logarithmic factor.","lang":"eng"}],"year":"2020","article_processing_charge":"No","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik"},{"publication":"36th European Workshop on Computational Geometry","citation":{"apa":"Aichholzer, O., Obmann, J., Patak, P., Perz, D., & Tkadlec, J. (2020). Disjoint tree-compatible plane perfect matchings. In 36th European Workshop on Computational Geometry. Würzburg, Germany, Virtual.","ama":"Aichholzer O, Obmann J, Patak P, Perz D, Tkadlec J. Disjoint tree-compatible plane perfect matchings. In: 36th European Workshop on Computational Geometry. ; 2020.","chicago":"Aichholzer, Oswin, Julia Obmann, Pavel Patak, Daniel Perz, and Josef Tkadlec. “Disjoint Tree-Compatible Plane Perfect Matchings.” In 36th European Workshop on Computational Geometry, 2020.","mla":"Aichholzer, Oswin, et al. “Disjoint Tree-Compatible Plane Perfect Matchings.” 36th European Workshop on Computational Geometry, 56, 2020.","ieee":"O. Aichholzer, J. Obmann, P. Patak, D. Perz, and J. Tkadlec, “Disjoint tree-compatible plane perfect matchings,” in 36th European Workshop on Computational Geometry, Würzburg, Germany, Virtual, 2020.","short":"O. Aichholzer, J. Obmann, P. Patak, D. Perz, J. Tkadlec, in:, 36th European Workshop on Computational Geometry, 2020.","ista":"Aichholzer O, Obmann J, Patak P, Perz D, Tkadlec J. 2020. Disjoint tree-compatible plane perfect matchings. 36th European Workshop on Computational Geometry. EuroCG: European Workshop on Computational Geometry, 56."},"department":[{"_id":"KrCh"},{"_id":"UlWa"}],"author":[{"full_name":"Aichholzer, Oswin","last_name":"Aichholzer","first_name":"Oswin"},{"last_name":"Obmann","full_name":"Obmann, Julia","first_name":"Julia"},{"first_name":"Pavel","id":"B593B804-1035-11EA-B4F1-947645A5BB83","full_name":"Patak, Pavel","last_name":"Patak"},{"first_name":"Daniel","last_name":"Perz","full_name":"Perz, Daniel"},{"full_name":"Tkadlec, Josef","last_name":"Tkadlec","orcid":"0000-0002-1097-9684","first_name":"Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"}],"_id":"15082","corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","main_file_link":[{"open_access":"1","url":"https://www1.pub.informatik.uni-wuerzburg.de/eurocg2020/data/uploads/papers/eurocg20_paper_56.pdf"}],"oa":1,"title":"Disjoint tree-compatible plane perfect matchings","date_updated":"2026-06-18T17:45:52Z","oa_version":"Published Version","publication_status":"published","ddc":["000"],"date_published":"2020-04-01T00:00:00Z","status":"public","language":[{"iso":"eng"}],"type":"conference","date_created":"2024-03-05T08:57:17Z","acknowledgement":"Research on this work was initiated at the 6th Austrian-Japanese-Mexican-Spanish Workshop on Discrete Geometry and continued during the 16th European Geometric Graph-Week, both held near Strobl, Austria. We are grateful to the participants for the inspiring atmosphere. We especially thank Alexander Pilz for bringing this class of problems to our attention and Birgit Vogtenhuber for inspiring discussions. D.P. is partially supported by the FWF grant I 3340-N35 (Collaborative DACH project Arrangements and Drawings). The research stay of P.P. at IST Austria is funded by the project CZ.02.2.69/0.0/0.0/17_050/0008466 Improvement of internationalization in the field of research and development at Charles University, through the support of quality projects MSCA-IF. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 734922.","quality_controlled":"1","month":"04","conference":{"end_date":"2020-03-18","start_date":"2020-03-16","location":"Würzburg, Germany, Virtual","name":"EuroCG: European Workshop on Computational Geometry"},"abstract":[{"text":"Two plane drawings of geometric graphs on the same set of points are called disjoint compatible if their union is plane and they do not have an edge in common. For a given set S of 2n points two plane drawings of perfect matchings M1 and M2 (which do not need to be disjoint nor compatible) are disjoint tree-compatible if there exists a plane drawing of a spanning tree T on S which is disjoint compatible to both M1 and M2.\r\nWe show that the graph of all disjoint tree-compatible perfect geometric matchings on 2n points in convex position is connected if and only if 2n ≥ 10. Moreover, in that case the diameter\r\nof this graph is either 4 or 5, independent of n.","lang":"eng"}],"year":"2020","article_number":"56","article_processing_charge":"No"},{"external_id":{"arxiv":["2010.12460"]},"acknowledgement":"The authors would like to thank Blair Bilodeau, David Fleet, Mufan Li, and Jeffrey Negrea for\r\nhelpful discussions. FF was supported by OGS Scholarship. DA and IM were supported the\r\nEuropean Research Council (ERC) under the European Union’s Horizon 2020 research and innovation\r\nprogramme (grant agreement No 805223 ScaleML). DMR was supported by an NSERC Discovery\r\nGrant. ARK was supported by NSERC Postdoctoral Fellowship. Resources used in preparing this research were provided, in part, by the Province of Ontario, the Government of Canada through CIFAR, and companies sponsoring the Vector Institute.","date_created":"2024-03-06T08:35:58Z","quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":" 33","oa":1,"title":"Adaptive gradient quantization for data-parallel SGD","date_updated":"2025-04-14T07:49:16Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2010.12460"}],"_id":"15086","volume":33,"publication":"Advances in Neural Information Processing Systems","arxiv":1,"citation":{"apa":"Faghri, F., Tabrizian, I., Markov, I., Alistarh, D.-A., Roy, D., & Ramezani-Kebrya, A. (2020). Adaptive gradient quantization for data-parallel SGD. In Advances in Neural Information Processing Systems (Vol. 33). Vancouver, Canada: Neural Information Processing Systems Foundation.","ama":"Faghri F, Tabrizian I, Markov I, Alistarh D-A, Roy D, Ramezani-Kebrya A. Adaptive gradient quantization for data-parallel SGD. In: Advances in Neural Information Processing Systems. Vol 33. Neural Information Processing Systems Foundation; 2020.","chicago":"Faghri, Fartash , Iman Tabrizian, Ilia Markov, Dan-Adrian Alistarh, Daniel Roy, and Ali Ramezani-Kebrya. “Adaptive Gradient Quantization for Data-Parallel SGD.” In Advances in Neural Information Processing Systems, Vol. 33. Neural Information Processing Systems Foundation, 2020.","ieee":"F. Faghri, I. Tabrizian, I. Markov, D.-A. Alistarh, D. Roy, and A. Ramezani-Kebrya, “Adaptive gradient quantization for data-parallel SGD,” in Advances in Neural Information Processing Systems, Vancouver, Canada, 2020, vol. 33.","mla":"Faghri, Fartash, et al. “Adaptive Gradient Quantization for Data-Parallel SGD.” Advances in Neural Information Processing Systems, vol. 33, Neural Information Processing Systems Foundation, 2020.","short":"F. Faghri, I. Tabrizian, I. Markov, D.-A. Alistarh, D. Roy, A. Ramezani-Kebrya, in:, Advances in Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2020.","ista":"Faghri F, Tabrizian I, Markov I, Alistarh D-A, Roy D, Ramezani-Kebrya A. 2020. Adaptive gradient quantization for data-parallel SGD. Advances in Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems, NeurIPS, vol. 33."},"abstract":[{"lang":"eng","text":"Many communication-efficient variants of SGD use gradient quantization schemes. These schemes are often heuristic and fixed over the course of training. We empirically observe that the statistics of gradients of deep models change during the training. Motivated by this observation, we introduce two adaptive quantization schemes, ALQ and AMQ. In both schemes, processors update their compression schemes in parallel by efficiently computing sufficient statistics of a parametric distribution. We improve the validation accuracy by almost 2% on CIFAR-10 and 1% on ImageNet in challenging low-cost communication setups. Our adaptive methods are also significantly more robust to the choice of hyperparameters.\r\n\r\n"}],"conference":{"name":"NeurIPS: Neural Information Processing Systems","start_date":"2020-12-06","end_date":"2020-12-12","location":"Vancouver, Canada"},"project":[{"name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020","_id":"268A44D6-B435-11E9-9278-68D0E5697425","grant_number":"805223"}],"publisher":"Neural Information Processing Systems Foundation","year":"2020","article_processing_charge":"No","month":"12","type":"conference","publication_status":"published","status":"public","date_published":"2020-12-10T00:00:00Z","publication_identifier":{"isbn":["9781713829546"]},"oa_version":"Preprint","day":"10","ec_funded":1,"alternative_title":["NeurIPS"],"author":[{"first_name":"Fartash ","full_name":"Faghri, Fartash ","last_name":"Faghri"},{"first_name":"Iman ","last_name":"Tabrizian","full_name":"Tabrizian, Iman "},{"id":"D0CF4148-C985-11E9-8066-0BDEE5697425","first_name":"Ilia","last_name":"Markov","full_name":"Markov, Ilia"},{"full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Daniel ","last_name":"Roy","full_name":"Roy, Daniel "},{"full_name":"Ramezani-Kebrya, Ali ","last_name":"Ramezani-Kebrya","first_name":"Ali "}],"department":[{"_id":"DaAl"}]},{"issue":"S2","date_created":"2024-04-03T09:40:11Z","keyword":["Instrumentation"],"quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1017/s1431927620021881","intvolume":" 26","title":"Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration","date_updated":"2024-10-09T21:08:43Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"15286","volume":26,"page":"2518-2519","publication":"Microscopy and Microanalysis","citation":{"apa":"Fäßler, F., Dimchev, G. A., Hodirnau, V.-V., Zens, B., Möhl, C., Bradke, F., & Schur, F. K. (2020). Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration. Microscopy and Microanalysis. Oxford University Press. https://doi.org/10.1017/s1431927620021881","ama":"Fäßler F, Dimchev GA, Hodirnau V-V, et al. Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration. Microscopy and Microanalysis. 2020;26(S2):2518-2519. doi:10.1017/s1431927620021881","chicago":"Fäßler, Florian, Georgi A Dimchev, Victor-Valentin Hodirnau, Bettina Zens, Christoph Möhl, Frank Bradke, and Florian KM Schur. “Cryo-Electron Tomography Workflows for Quantitative Analysis of Actin Networks Involved in Cell Migration.” Microscopy and Microanalysis. Oxford University Press, 2020. https://doi.org/10.1017/s1431927620021881.","mla":"Fäßler, Florian, et al. “Cryo-Electron Tomography Workflows for Quantitative Analysis of Actin Networks Involved in Cell Migration.” Microscopy and Microanalysis, vol. 26, no. S2, Oxford University Press, 2020, pp. 2518–19, doi:10.1017/s1431927620021881.","ieee":"F. Fäßler et al., “Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration,” Microscopy and Microanalysis, vol. 26, no. S2. Oxford University Press, pp. 2518–2519, 2020.","short":"F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, B. Zens, C. Möhl, F. Bradke, F.K. Schur, Microscopy and Microanalysis 26 (2020) 2518–2519.","ista":"Fäßler F, Dimchev GA, Hodirnau V-V, Zens B, Möhl C, Bradke F, Schur FK. 2020. Cryo-electron tomography workflows for quantitative analysis of actin networks involved in cell migration. Microscopy and Microanalysis. 26(S2), 2518–2519."},"article_processing_charge":"No","year":"2020","publisher":"Oxford University Press","month":"08","type":"journal_article","publication_status":"published","date_published":"2020-08-01T00:00:00Z","status":"public","publication_identifier":{"issn":["1431-9276"],"eissn":["1435-8115"]},"oa_version":"None","day":"01","corr_author":"1","fulldoi":"https://doi.org/10.1017/s1431927620021881","article_type":"original","department":[{"_id":"FlSc"},{"_id":"EM-Fac"}],"author":[{"last_name":"Fäßler","full_name":"Fäßler, Florian","first_name":"Florian","orcid":"0000-0001-7149-769X","id":"404F5528-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Dimchev, Georgi A","last_name":"Dimchev","id":"38C393BE-F248-11E8-B48F-1D18A9856A87","first_name":"Georgi A","orcid":"0000-0001-8370-6161"},{"orcid":"0000-0003-3904-947X","first_name":"Victor-Valentin","id":"3661B498-F248-11E8-B48F-1D18A9856A87","full_name":"Hodirnau, Victor-Valentin","last_name":"Hodirnau"},{"id":"45FD126C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9561-1239","first_name":"Bettina","last_name":"Zens","full_name":"Zens, Bettina"},{"first_name":"Christoph","full_name":"Möhl, Christoph","last_name":"Möhl"},{"first_name":"Frank","full_name":"Bradke, Frank","last_name":"Bradke"},{"last_name":"Schur","full_name":"Schur, Florian KM","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4790-8078","first_name":"Florian KM"}]},{"publication_identifier":{"eissn":["2578-9430"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","has_accepted_license":"1","day":"20","OA_place":"publisher","fulldoi":"https://doi.org/10.17912/MICROPUB.BIOLOGY.000303","article_type":"original","author":[{"first_name":"Anna","full_name":"Kazatskaya, Anna","last_name":"Kazatskaya"},{"first_name":"Lisa","last_name":"Yuan","full_name":"Yuan, Lisa"},{"first_name":"Niko Paresh","id":"E95D3014-9D8C-11E9-9C80-D2F8E5697425","full_name":"Amin-Wetzel, Niko Paresh","last_name":"Amin-Wetzel"},{"full_name":"Philbrook, Alison","last_name":"Philbrook","first_name":"Alison"},{"last_name":"de Bono","full_name":"de Bono, Mario","orcid":"0000-0001-8347-0443","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sengupta, Piali","last_name":"Sengupta","first_name":"Piali"}],"department":[{"_id":"MaDe"}],"publisher":"Caltech Library","year":"2020","article_processing_charge":"Yes","month":"09","file_date_updated":"2025-03-11T08:27:40Z","type":"journal_article","publication_status":"published","status":"public","date_published":"2020-09-20T00:00:00Z","DOAJ_listed":"1","title":"The URX oxygen-sensing neurons in C. elegans are ciliated","OA_type":"gold","oa":1,"date_updated":"2025-03-11T08:30:41Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"19306","volume":2020,"publication":"microPublication Biology","file":[{"file_id":"19383","file_size":1486239,"file_name":"2020_MicroPublBio_Kazatskaya.pdf","content_type":"application/pdf","relation":"main_file","date_updated":"2025-03-11T08:27:40Z","date_created":"2025-03-11T08:27:40Z","access_level":"open_access","checksum":"14a7cad20775521ce85e0e3c77aa7936","creator":"dernst","success":1}],"citation":{"chicago":"Kazatskaya, Anna, Lisa Yuan, Niko Paresh Amin-Wetzel, Alison Philbrook, Mario de Bono, and Piali Sengupta. “The URX Oxygen-Sensing Neurons in C. Elegans Are Ciliated.” MicroPublication Biology. Caltech Library, 2020. https://doi.org/10.17912/MICROPUB.BIOLOGY.000303.","ama":"Kazatskaya A, Yuan L, Amin-Wetzel NP, Philbrook A, de Bono M, Sengupta P. The URX oxygen-sensing neurons in C. elegans are ciliated. microPublication Biology. 2020;2020(9). doi:10.17912/MICROPUB.BIOLOGY.000303","apa":"Kazatskaya, A., Yuan, L., Amin-Wetzel, N. P., Philbrook, A., de Bono, M., & Sengupta, P. (2020). The URX oxygen-sensing neurons in C. elegans are ciliated. MicroPublication Biology. Caltech Library. https://doi.org/10.17912/MICROPUB.BIOLOGY.000303","ista":"Kazatskaya A, Yuan L, Amin-Wetzel NP, Philbrook A, de Bono M, Sengupta P. 2020. The URX oxygen-sensing neurons in C. elegans are ciliated. microPublication Biology. 2020(9), 303.","short":"A. Kazatskaya, L. Yuan, N.P. Amin-Wetzel, A. Philbrook, M. de Bono, P. Sengupta, MicroPublication Biology 2020 (2020).","ieee":"A. Kazatskaya, L. Yuan, N. P. Amin-Wetzel, A. Philbrook, M. de Bono, and P. Sengupta, “The URX oxygen-sensing neurons in C. elegans are ciliated,” microPublication Biology, vol. 2020, no. 9. Caltech Library, 2020.","mla":"Kazatskaya, Anna, et al. “The URX Oxygen-Sensing Neurons in C. Elegans Are Ciliated.” MicroPublication Biology, vol. 2020, no. 9, 303, Caltech Library, 2020, doi:10.17912/MICROPUB.BIOLOGY.000303."},"external_id":{"pmid":["33005885"]},"pmid":1,"article_number":"303","issue":"9","date_created":"2025-03-07T08:21:51Z","acknowledgement":"We thank Maureen Barr, Martin Harterink, Max Heiman and Inna Nechipurenko for reagents, the Caenorhabditis Genetics Center for strains, and the Sengupta lab for comments and advice.\r\nThis work was funded in part by the NIH (R35 GM122463 – P.S., and F32 DC018453 – A.P.), and the EMBO (ALTF 302-2019 – N.A-W.).","quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.17912/MICROPUB.BIOLOGY.000303","ddc":["570"],"intvolume":" 2020"},{"language":[{"iso":"eng"}],"doi":"10.1109/TVCG.2018.2883628","ddc":["006"],"intvolume":" 26","isi":1,"pmid":1,"external_id":{"pmid":["30507534"],"isi":["000532295600014"]},"issue":"6","date_created":"2018-12-16T22:59:21Z","acknowledgement":"This work was partially supported by JSPS Grant-in-Aid forYoung Scientists (Start-up) 16H07410, the ERC StartingGrantsrealFlow(StG-2015-637014) andBigSplash(StG-2014-638176). This research was supported by the Scientific Ser-vice Units (SSU) of IST Austria through resources providedby Scientific Computing. We would like to express my grati-tude to Nobuyuki Umetani and Tomas Skrivan for insight-ful discussion.","quality_controlled":"1","volume":26,"_id":"5681","page":"2288-2302","publication":"IEEE Transactions on Visualization and Computer Graphics","file":[{"date_created":"2020-10-08T08:34:53Z","access_level":"open_access","date_updated":"2020-10-08T08:34:53Z","file_size":21910098,"file_id":"8626","relation":"main_file","file_name":"preprint.pdf","content_type":"application/pdf","success":1,"creator":"wojtan","checksum":"8d4c55443a0ee335bb5bb652de503042"}],"citation":{"mla":"Hikaru, Ibayashi, et al. “Simulating Liquids on Dynamically Warping Grids.” IEEE Transactions on Visualization and Computer Graphics, vol. 26, no. 6, IEEE, 2020, pp. 2288–302, doi:10.1109/TVCG.2018.2883628.","ieee":"I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, and R. Ando, “Simulating liquids on dynamically warping grids,” IEEE Transactions on Visualization and Computer Graphics, vol. 26, no. 6. IEEE, pp. 2288–2302, 2020.","ista":"Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. 2020. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 26(6), 2288–2302.","short":"I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, R. Ando, IEEE Transactions on Visualization and Computer Graphics 26 (2020) 2288–2302.","apa":"Hikaru, I., Wojtan, C., Thuerey, N., Igarashi, T., & Ando, R. (2020). Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. IEEE. https://doi.org/10.1109/TVCG.2018.2883628","chicago":"Hikaru, Ibayashi, Chris Wojtan, Nils Thuerey, Takeo Igarashi, and Ryoichi Ando. “Simulating Liquids on Dynamically Warping Grids.” IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020. https://doi.org/10.1109/TVCG.2018.2883628.","ama":"Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 2020;26(6):2288-2302. doi:10.1109/TVCG.2018.2883628"},"oa":1,"title":"Simulating liquids on dynamically warping grids","scopus_import":"1","acknowledged_ssus":[{"_id":"ScienComp"}],"date_updated":"2025-07-10T11:52:55Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2020-10-08T08:34:53Z","type":"journal_article","publication_status":"published","date_published":"2020-06-01T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"We introduce dynamically warping grids for adaptive liquid simulation. Our primary contributions are a strategy for dynamically deforming regular grids over the course of a simulation and a method for efficiently utilizing these deforming grids for liquid simulation. Prior work has shown that unstructured grids are very effective for adaptive fluid simulations. However, unstructured grids often lead to complicated implementations and a poor cache hit rate due to inconsistent memory access. Regular grids, on the other hand, provide a fast, fixed memory access pattern and straightforward implementation. Our method combines the advantages of both: we leverage the simplicity of regular grids while still achieving practical and controllable spatial adaptivity. We demonstrate that our method enables adaptive simulations that are fast, flexible, and robust to null-space issues. At the same time, our method is simple to implement and takes advantage of existing highly-tuned algorithms."}],"article_processing_charge":"No","year":"2020","publisher":"IEEE","month":"06","fulldoi":"https://doi.org/10.1109/TVCG.2018.2883628","article_type":"original","author":[{"first_name":"Ibayashi","full_name":"Hikaru, Ibayashi","last_name":"Hikaru"},{"id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","first_name":"Christopher J","orcid":"0000-0001-6646-5546","full_name":"Wojtan, Christopher J","last_name":"Wojtan"},{"last_name":"Thuerey","full_name":"Thuerey, Nils","first_name":"Nils"},{"full_name":"Igarashi, Takeo","last_name":"Igarashi","first_name":"Takeo"},{"first_name":"Ryoichi","last_name":"Ando","full_name":"Ando, Ryoichi"}],"department":[{"_id":"ChWo"}],"publication_identifier":{"issn":["1077-2626"],"eissn":["1941-0506"]},"oa_version":"Submitted Version","day":"01","has_accepted_license":"1"},{"article_type":"original","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1007/s10955-020-02671-4"}]},"department":[{"_id":"JaMa"}],"author":[{"first_name":"Eric A.","full_name":"Carlen, Eric A.","last_name":"Carlen"},{"full_name":"Maas, Jan","last_name":"Maas","first_name":"Jan","orcid":"0000-0002-0845-1338","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87"}],"ec_funded":1,"corr_author":"1","fulldoi":"https://doi.org/10.1007/s10955-019-02434-w","has_accepted_license":"1","day":"01","publication_identifier":{"eissn":["1572-9613"],"issn":["0022-4715"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","publication_status":"published","status":"public","date_published":"2020-01-01T00:00:00Z","file_date_updated":"2020-07-14T12:47:28Z","type":"journal_article","month":"01","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"},{"call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics","_id":"256E75B8-B435-11E9-9278-68D0E5697425","grant_number":"716117"},{"name":"Taming Complexity in Partial Differential Systems","call_identifier":"FWF","_id":"260482E2-B435-11E9-9278-68D0E5697425","grant_number":"F06504"}],"abstract":[{"lang":"eng","text":"We study dynamical optimal transport metrics between density matricesassociated to symmetric Dirichlet forms on finite-dimensional C∗-algebras. Our settingcovers arbitrary skew-derivations and it provides a unified framework that simultaneously generalizes recently constructed transport metrics for Markov chains, Lindblad equations, and the Fermi Ornstein–Uhlenbeck semigroup. We develop a non-nommutative differential calculus that allows us to obtain non-commutative Ricci curvature bounds, logarithmic Sobolev inequalities, transport-entropy inequalities, andspectral gap estimates."}],"article_processing_charge":"Yes (via OA deal)","year":"2020","publisher":"Springer Nature","publication":"Journal of Statistical Physics","arxiv":1,"file":[{"checksum":"7b04befbdc0d4982c0ee945d25d19872","creator":"dernst","relation":"main_file","content_type":"application/pdf","file_name":"2019_JourStatistPhysics_Carlen.pdf","file_size":905538,"file_id":"7209","date_updated":"2020-07-14T12:47:28Z","access_level":"open_access","date_created":"2019-12-23T12:03:09Z"}],"citation":{"chicago":"Carlen, Eric A., and Jan Maas. “Non-Commutative Calculus, Optimal Transport and Functional Inequalities in Dissipative Quantum Systems.” Journal of Statistical Physics. Springer Nature, 2020. https://doi.org/10.1007/s10955-019-02434-w.","ama":"Carlen EA, Maas J. Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems. Journal of Statistical Physics. 2020;178(2):319-378. doi:10.1007/s10955-019-02434-w","apa":"Carlen, E. A., & Maas, J. (2020). Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems. Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-019-02434-w","ista":"Carlen EA, Maas J. 2020. Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems. Journal of Statistical Physics. 178(2), 319–378.","short":"E.A. Carlen, J. Maas, Journal of Statistical Physics 178 (2020) 319–378.","ieee":"E. A. Carlen and J. Maas, “Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems,” Journal of Statistical Physics, vol. 178, no. 2. Springer Nature, pp. 319–378, 2020.","mla":"Carlen, Eric A., and Jan Maas. “Non-Commutative Calculus, Optimal Transport and Functional Inequalities in Dissipative Quantum Systems.” Journal of Statistical Physics, vol. 178, no. 2, Springer Nature, 2020, pp. 319–78, doi:10.1007/s10955-019-02434-w."},"volume":178,"_id":"6358","page":"319-378","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems","oa":1,"scopus_import":"1","date_updated":"2025-06-12T07:27:20Z","ddc":["500"],"intvolume":" 178","isi":1,"language":[{"iso":"eng"}],"doi":"10.1007/s10955-019-02434-w","date_created":"2019-04-30T07:34:18Z","quality_controlled":"1","pmid":1,"external_id":{"pmid":["33223567"],"isi":["000498933300001"],"arxiv":["1811.04572"]},"issue":"2"},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","publication_identifier":{"eissn":["1083-6489"]},"day":"16","has_accepted_license":"1","fulldoi":"https://doi.org/10.1214/20-EJP479","author":[{"first_name":"Konstantinos","last_name":"Dareiotis","full_name":"Dareiotis, Konstantinos"},{"id":"44ECEDF2-F248-11E8-B48F-1D18A9856A87","first_name":"Mate","last_name":"Gerencser","full_name":"Gerencser, Mate"}],"department":[{"_id":"JaMa"}],"article_type":"original","publisher":"Institute of Mathematical Statistics","year":"2020","article_processing_charge":"No","abstract":[{"text":"The strong rate of convergence of the Euler-Maruyama scheme for nondegenerate SDEs with irregular drift coefficients is considered. In the case of α-Hölder drift in the recent literature the rate α/2 was proved in many related situations. By exploiting the regularising effect of the noise more efficiently, we show that the rate is in fact arbitrarily close to 1/2 for all α>0. The result extends to Dini continuous coefficients, while in d=1 also to all bounded measurable coefficients.","lang":"eng"}],"month":"07","type":"journal_article","file_date_updated":"2020-09-21T13:15:02Z","status":"public","date_published":"2020-07-16T00:00:00Z","publication_status":"published","date_updated":"2023-10-16T09:22:50Z","scopus_import":"1","title":"On the regularisation of the noise for the Euler-Maruyama scheme with irregular drift","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"6359","volume":25,"file":[{"date_created":"2020-09-21T13:15:02Z","access_level":"open_access","file_id":"8549","file_size":273042,"file_name":"2020_EJournProbab_Dareiotis.pdf","content_type":"application/pdf","relation":"main_file","date_updated":"2020-09-21T13:15:02Z","success":1,"checksum":"8e7c42e72596f6889d786e8e8b89994f","creator":"dernst"}],"arxiv":1,"citation":{"mla":"Dareiotis, Konstantinos, and Mate Gerencser. “On the Regularisation of the Noise for the Euler-Maruyama Scheme with Irregular Drift.” Electronic Journal of Probability, vol. 25, 82, Institute of Mathematical Statistics, 2020, doi:10.1214/20-EJP479.","ieee":"K. Dareiotis and M. Gerencser, “On the regularisation of the noise for the Euler-Maruyama scheme with irregular drift,” Electronic Journal of Probability, vol. 25. Institute of Mathematical Statistics, 2020.","short":"K. Dareiotis, M. Gerencser, Electronic Journal of Probability 25 (2020).","ista":"Dareiotis K, Gerencser M. 2020. On the regularisation of the noise for the Euler-Maruyama scheme with irregular drift. Electronic Journal of Probability. 25, 82.","apa":"Dareiotis, K., & Gerencser, M. (2020). On the regularisation of the noise for the Euler-Maruyama scheme with irregular drift. Electronic Journal of Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/20-EJP479","ama":"Dareiotis K, Gerencser M. On the regularisation of the noise for the Euler-Maruyama scheme with irregular drift. 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Petr Novotný is supported by the Czech Science Foundation grant\r\nNo. GJ19-15134Y.","date_created":"2025-07-10T13:28:51Z","page":"221-258","_id":"19986","citation":{"ista":"Chatterjee K, Fu H, Novotný P. 2020.Termination Analysis of Probabilistic Programs with Martingales. In: Foundations of Probabilistic Programming. , 221–258.","short":"K. Chatterjee, H. Fu, P. Novotný, in:, Foundations of Probabilistic Programming, Cambridge University Press, 2020, pp. 221–258.","ieee":"K. Chatterjee, H. Fu, and P. Novotný, “Termination Analysis of Probabilistic Programs with Martingales,” in Foundations of Probabilistic Programming, Cambridge University Press, 2020, pp. 221–258.","mla":"Chatterjee, Krishnendu, et al. “Termination Analysis of Probabilistic Programs with Martingales.” Foundations of Probabilistic Programming, Cambridge University Press, 2020, pp. 221–58, doi:10.1017/9781108770750.008.","chicago":"Chatterjee, Krishnendu, Hongfei Fu, and Petr Novotný. “Termination Analysis of Probabilistic Programs with Martingales.” In Foundations of Probabilistic Programming, 221–58. Cambridge University Press, 2020. https://doi.org/10.1017/9781108770750.008.","ama":"Chatterjee K, Fu H, Novotný P. Termination Analysis of Probabilistic Programs with Martingales. In: Foundations of Probabilistic Programming. Cambridge University Press; 2020:221-258. doi:10.1017/9781108770750.008","apa":"Chatterjee, K., Fu, H., & Novotný, P. (2020). Termination Analysis of Probabilistic Programs with Martingales. In Foundations of Probabilistic Programming (pp. 221–258). 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In the presence of probabilistic behaviour, there are two fundamental extensions of the termination question: (a) the almost-sure termination question, which asks whether the termination probability is 1; and (b) the bounded-time termination question, which asks whether the expected termination time is bounded. There are many active research directions to address these two questions; one important such direction is the use of martingale theory for termination analysis. In this chapter, we survey the main techniques of the martingale-based approach to the termination analysis of probabilistic programs."}],"month":"11","corr_author":"1","fulldoi":"https://doi.org/10.1017/9781108770750.008","OA_place":"publisher","author":[{"last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Fu, Hongfei","last_name":"Fu","first_name":"Hongfei","id":"3AAD03D6-F248-11E8-B48F-1D18A9856A87"},{"id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","first_name":"Petr","full_name":"Novotný, Petr","last_name":"Novotný"}],"department":[{"_id":"KrCh"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","publication_identifier":{"eisbn":["9781108770750"],"isbn":["9781108488518"]},"has_accepted_license":"1","day":"18"},{"abstract":[{"text":"We prove that in the absence of topological changes, the notion of BV solutions to planar multiphase mean curvature flow does not allow for a mechanism for (unphysical) non-uniqueness. Our approach is based on the local structure of the energy landscape near a classical evolution by mean curvature. Mean curvature flow being the gradient flow of the surface energy functional, we develop a gradient-flow analogue of the notion of calibrations. Just like the existence of a calibration guarantees that one has reached a global minimum in the energy landscape, the existence of a \"gradient flow calibration\" ensures that the route of steepest descent in the energy landscape is unique and stable.","lang":"eng"}],"project":[{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","call_identifier":"H2020"}],"year":"2020","article_processing_charge":"No","month":"03","type":"preprint","publication_status":"draft","date_published":"2020-03-11T00:00:00Z","status":"public","oa_version":"Preprint","day":"11","ec_funded":1,"fulldoi":"https://doi.org/10.48550/arXiv.2003.05478","department":[{"_id":"JuFi"}],"author":[{"orcid":"0000-0002-0479-558X","first_name":"Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","last_name":"Fischer","full_name":"Fischer, Julian L"},{"orcid":"0000-0001-7252-8072","first_name":"Sebastian","id":"4D23B7DA-F248-11E8-B48F-1D18A9856A87","last_name":"Hensel","full_name":"Hensel, Sebastian"},{"first_name":"Tim","last_name":"Laux","full_name":"Laux, Tim"},{"full_name":"Simon, Thilo","last_name":"Simon","first_name":"Thilo"}],"related_material":{"record":[{"status":"public","id":"10007","relation":"dissertation_contains"}]},"external_id":{"arxiv":["2003.05478"]},"article_number":"2003.05478","acknowledgement":"Parts of the paper were written during the visit of the authors to the Hausdorff Research Institute for Mathematics (HIM), University of Bonn, in the framework of the trimester program “Evolution of Interfaces”. The support and the hospitality of HIM are gratefully acknowledged. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 665385.","date_created":"2021-09-13T12:17:11Z","language":[{"iso":"eng"}],"doi":"10.48550/arXiv.2003.05478","oa":1,"title":"The local structure of the energy landscape in multiphase mean curvature flow: weak-strong uniqueness and stability of evolutions","date_updated":"2026-04-08T07:01:01Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2003.05478"}],"_id":"10012","publication":"arXiv","citation":{"apa":"Fischer, J. L., Hensel, S., Laux, T., & Simon, T. (n.d.). The local structure of the energy landscape in multiphase mean curvature flow: weak-strong uniqueness and stability of evolutions. arXiv. https://doi.org/10.48550/arXiv.2003.05478","chicago":"Fischer, Julian L, Sebastian Hensel, Tim Laux, and Thilo Simon. “The Local Structure of the Energy Landscape in Multiphase Mean Curvature Flow: Weak-Strong Uniqueness and Stability of Evolutions.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2003.05478.","ama":"Fischer JL, Hensel S, Laux T, Simon T. The local structure of the energy landscape in multiphase mean curvature flow: weak-strong uniqueness and stability of evolutions. arXiv. doi:10.48550/arXiv.2003.05478","ieee":"J. L. Fischer, S. Hensel, T. Laux, and T. Simon, “The local structure of the energy landscape in multiphase mean curvature flow: weak-strong uniqueness and stability of evolutions,” arXiv. .","mla":"Fischer, Julian L., et al. “The Local Structure of the Energy Landscape in Multiphase Mean Curvature Flow: Weak-Strong Uniqueness and Stability of Evolutions.” ArXiv, 2003.05478, doi:10.48550/arXiv.2003.05478.","ista":"Fischer JL, Hensel S, Laux T, Simon T. The local structure of the energy landscape in multiphase mean curvature flow: weak-strong uniqueness and stability of evolutions. arXiv, 2003.05478.","short":"J.L. Fischer, S. Hensel, T. Laux, T. Simon, ArXiv (n.d.)."},"arxiv":1},{"day":"25","oa_version":"Preprint","department":[{"_id":"JaMa"}],"author":[{"id":"35C79D68-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik L","full_name":"Forkert, Dominik L","last_name":"Forkert"},{"orcid":"0000-0002-0845-1338","first_name":"Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","last_name":"Maas","full_name":"Maas, Jan"},{"full_name":"Portinale, Lorenzo","last_name":"Portinale","first_name":"Lorenzo","id":"30AD2CBC-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"status":"public","id":"11739","relation":"later_version"},{"status":"public","id":"10030","relation":"dissertation_contains"}]},"fulldoi":"https://doi.org/10.48550/arXiv.2008.10962","corr_author":"1","ec_funded":1,"month":"08","year":"2020","article_processing_charge":"No","abstract":[{"lang":"eng","text":"We consider finite-volume approximations of Fokker-Planck equations on bounded convex domains in R^d and study the corresponding gradient flow structures. We reprove the convergence of the discrete to continuous Fokker-Planck equation via the method of Evolutionary Γ-convergence, i.e., we pass to the limit at the level of the gradient flow structures, generalising the one-dimensional result obtained by Disser and Liero. The proof is of variational nature and relies on a Mosco convergence result for functionals in the discrete-to-continuum limit that is of independent interest. Our results apply to arbitrary regular meshes, even though the associated discrete transport distances may fail to converge to the Wasserstein distance in this generality."}],"project":[{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117"},{"name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504"}],"date_published":"2020-08-25T00:00:00Z","status":"public","publication_status":"draft","type":"preprint","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2008.10962"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-04-08T07:00:03Z","title":"Evolutionary Γ-convergence of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions","oa":1,"citation":{"mla":"Forkert, Dominik L., et al. “Evolutionary Γ-Convergence of Entropic Gradient Flow Structures for Fokker-Planck Equations in Multiple Dimensions.” ArXiv, 2008.10962, doi:10.48550/arXiv.2008.10962.","ieee":"D. L. Forkert, J. Maas, and L. Portinale, “Evolutionary Γ-convergence of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions,” arXiv. .","ista":"Forkert DL, Maas J, Portinale L. Evolutionary Γ-convergence of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions. arXiv, 2008.10962.","short":"D.L. Forkert, J. Maas, L. Portinale, ArXiv (n.d.).","apa":"Forkert, D. L., Maas, J., & Portinale, L. (n.d.). Evolutionary Γ-convergence of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions. arXiv. https://doi.org/10.48550/arXiv.2008.10962","chicago":"Forkert, Dominik L, Jan Maas, and Lorenzo Portinale. “Evolutionary Γ-Convergence of Entropic Gradient Flow Structures for Fokker-Planck Equations in Multiple Dimensions.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2008.10962.","ama":"Forkert DL, Maas J, Portinale L. Evolutionary Γ-convergence of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions. arXiv. doi:10.48550/arXiv.2008.10962"},"arxiv":1,"publication":"arXiv","_id":"10022","acknowledgement":"This work is supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 716117) and by the Austrian Science Fund (FWF), grants No F65 and W1245.","date_created":"2021-09-17T10:57:27Z","article_number":"2008.10962","external_id":{"arxiv":["2008.10962"]},"doi":"10.48550/arXiv.2008.10962","language":[{"iso":"eng"}]}]