[{"article_number":"dev176297","ec_funded":1,"publication_identifier":{"eissn":["1477-9129"],"issn":["0950-1991"]},"article_type":"original","year":"2019","doi":"10.1242/dev.176297","day":"04","oa":1,"file":[{"file_id":"7177","date_updated":"2020-07-14T12:47:50Z","relation":"main_file","checksum":"b6533c37dc8fbd803ffeca216e0a8b8a","content_type":"application/pdf","file_name":"2019_Development_Guerrero.pdf","date_created":"2019-12-13T07:34:06Z","file_size":7797881,"creator":"dernst","access_level":"open_access"}],"intvolume":"       146","date_published":"2019-12-04T00:00:00Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"call_identifier":"H2020","grant_number":"680037","_id":"B6FC0238-B512-11E9-945C-1524E6697425","name":"Coordination of Patterning And Growth In the Spinal Cord"}],"ddc":["570"],"publication":"Development","isi":1,"oa_version":"Published Version","status":"public","language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:47:50Z","has_accepted_license":"1","article_processing_charge":"No","title":"Neuronal differentiation influences progenitor arrangement in the vertebrate neuroepithelium","author":[{"full_name":"Guerrero, Pilar","last_name":"Guerrero","first_name":"Pilar"},{"last_name":"Perez-Carrasco","full_name":"Perez-Carrasco, Ruben","first_name":"Ruben"},{"first_name":"Marcin P","id":"343DA0DC-F248-11E8-B48F-1D18A9856A87","full_name":"Zagórski, Marcin P","last_name":"Zagórski","orcid":"0000-0001-7896-7762"},{"first_name":"David","last_name":"Page","full_name":"Page, David"},{"orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","full_name":"Kicheva, Anna","last_name":"Kicheva","first_name":"Anna"},{"full_name":"Briscoe, James","last_name":"Briscoe","first_name":"James"},{"full_name":"Page, Karen M.","last_name":"Page","first_name":"Karen M."}],"date_updated":"2025-04-14T07:27:30Z","pmid":1,"type":"journal_article","abstract":[{"text":"Cell division, movement and differentiation contribute to pattern formation in developing tissues. This is the case in the vertebrate neural tube, in which neurons differentiate in a characteristic pattern from a highly dynamic proliferating pseudostratified epithelium. To investigate how progenitor proliferation and differentiation affect cell arrangement and growth of the neural tube, we used experimental measurements to develop a mechanical model of the apical surface of the neuroepithelium that incorporates the effect of interkinetic nuclear movement and spatially varying rates of neuronal differentiation. Simulations predict that tissue growth and the shape of lineage-related clones of cells differ with the rate of differentiation. Growth is isotropic in regions of high differentiation, but dorsoventrally biased in regions of low differentiation. This is consistent with experimental observations. The absence of directional signalling in the simulations indicates that global mechanical constraints are sufficient to explain the observed differences in anisotropy. This provides insight into how the tissue growth rate affects cell dynamics and growth anisotropy and opens up possibilities to study the coupling between mechanics, pattern formation and growth in the neural tube.","lang":"eng"}],"citation":{"short":"P. Guerrero, R. Perez-Carrasco, M.P. Zagórski, D. Page, A. Kicheva, J. Briscoe, K.M. Page, Development 146 (2019).","ama":"Guerrero P, Perez-Carrasco R, Zagórski MP, et al. Neuronal differentiation influences progenitor arrangement in the vertebrate neuroepithelium. <i>Development</i>. 2019;146(23). doi:<a href=\"https://doi.org/10.1242/dev.176297\">10.1242/dev.176297</a>","ieee":"P. Guerrero <i>et al.</i>, “Neuronal differentiation influences progenitor arrangement in the vertebrate neuroepithelium,” <i>Development</i>, vol. 146, no. 23. The Company of Biologists, 2019.","apa":"Guerrero, P., Perez-Carrasco, R., Zagórski, M. P., Page, D., Kicheva, A., Briscoe, J., &#38; Page, K. M. (2019). Neuronal differentiation influences progenitor arrangement in the vertebrate neuroepithelium. <i>Development</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/dev.176297\">https://doi.org/10.1242/dev.176297</a>","mla":"Guerrero, Pilar, et al. “Neuronal Differentiation Influences Progenitor Arrangement in the Vertebrate Neuroepithelium.” <i>Development</i>, vol. 146, no. 23, dev176297, The Company of Biologists, 2019, doi:<a href=\"https://doi.org/10.1242/dev.176297\">10.1242/dev.176297</a>.","chicago":"Guerrero, Pilar, Ruben Perez-Carrasco, Marcin P Zagórski, David Page, Anna Kicheva, James Briscoe, and Karen M. Page. “Neuronal Differentiation Influences Progenitor Arrangement in the Vertebrate Neuroepithelium.” <i>Development</i>. The Company of Biologists, 2019. <a href=\"https://doi.org/10.1242/dev.176297\">https://doi.org/10.1242/dev.176297</a>.","ista":"Guerrero P, Perez-Carrasco R, Zagórski MP, Page D, Kicheva A, Briscoe J, Page KM. 2019. Neuronal differentiation influences progenitor arrangement in the vertebrate neuroepithelium. Development. 146(23), dev176297."},"quality_controlled":"1","corr_author":"1","publisher":"The Company of Biologists","volume":146,"department":[{"_id":"AnKi"}],"external_id":{"isi":["000507575700004"],"pmid":["31784457"]},"publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_created":"2019-12-10T14:39:50Z","month":"12","issue":"23","scopus_import":"1","_id":"7165"},{"language":[{"iso":"ger"}],"status":"public","month":"10","article_processing_charge":"No","place":"Wiesbaden","title":"Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt","page":"XIV, 245","_id":"7171","related_material":{"link":[{"relation":"press_release","description":"News on IST Website","url":"https://ist.ac.at/en/news/book-release-how-machines-learn/"}]},"date_updated":"2021-12-22T14:40:58Z","edition":"1","editor":[{"full_name":"Kersting, Kristian","last_name":"Kersting","first_name":"Kristian"},{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887","first_name":"Christoph"},{"full_name":"Rothkopf, Constantin","last_name":"Rothkopf","first_name":"Constantin"}],"publication_status":"published","date_created":"2019-12-11T14:15:56Z","oa_version":"None","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publisher":"Springer Nature","department":[{"_id":"ChLa"}],"publication_identifier":{"eisbn":["978-3-658-26763-6"],"isbn":["978-3-658-26762-9"]},"year":"2019","doi":"10.1007/978-3-658-26763-6","abstract":[{"lang":"ger","text":"Wissen Sie, was sich hinter künstlicher Intelligenz und maschinellem Lernen verbirgt? \r\nDieses Sachbuch erklärt Ihnen leicht verständlich und ohne komplizierte Formeln die grundlegenden Methoden und Vorgehensweisen des maschinellen Lernens. Mathematisches Vorwissen ist dafür nicht nötig. Kurzweilig und informativ illustriert Lisa, die Protagonistin des Buches, diese anhand von Alltagssituationen. \r\nEin Buch für alle, die in Diskussionen über Chancen und Risiken der aktuellen Entwicklung der künstlichen Intelligenz und des maschinellen Lernens mit Faktenwissen punkten möchten. Auch für Schülerinnen und Schüler geeignet!"}],"day":"30","type":"book_editor","citation":{"short":"K. Kersting, C. Lampert, C. Rothkopf, eds., Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt, 1st ed., Springer Nature, Wiesbaden, 2019.","chicago":"Kersting, Kristian, Christoph Lampert, and Constantin Rothkopf, eds. <i>Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt</i>. 1st ed. Wiesbaden: Springer Nature, 2019. <a href=\"https://doi.org/10.1007/978-3-658-26763-6\">https://doi.org/10.1007/978-3-658-26763-6</a>.","ista":"Kersting K, Lampert C, Rothkopf C eds. 2019. Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt 1st ed., Wiesbaden: Springer Nature, XIV, 245p.","mla":"Kersting, Kristian, et al., editors. <i>Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt</i>. 1st ed., Springer Nature, 2019, doi:<a href=\"https://doi.org/10.1007/978-3-658-26763-6\">10.1007/978-3-658-26763-6</a>.","ama":"Kersting K, Lampert C, Rothkopf C, eds. <i>Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt</i>. 1st ed. Wiesbaden: Springer Nature; 2019. doi:<a href=\"https://doi.org/10.1007/978-3-658-26763-6\">10.1007/978-3-658-26763-6</a>","apa":"Kersting, K., Lampert, C., &#38; Rothkopf, C. (Eds.). (2019). <i>Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt</i> (1st ed.). Wiesbaden: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-658-26763-6\">https://doi.org/10.1007/978-3-658-26763-6</a>","ieee":"K. Kersting, C. Lampert, and C. Rothkopf, Eds., <i>Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt</i>, 1st ed. Wiesbaden: Springer Nature, 2019."},"quality_controlled":"1","date_published":"2019-10-30T00:00:00Z"},{"oa_version":"Submitted Version","language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","author":[{"full_name":"Garriga, Edgar","last_name":"Garriga","first_name":"Edgar"},{"full_name":"Di Tommaso, Paolo","last_name":"Di Tommaso","first_name":"Paolo"},{"last_name":"Magis","full_name":"Magis, Cedrik","first_name":"Cedrik"},{"last_name":"Erb","full_name":"Erb, Ionas","first_name":"Ionas"},{"first_name":"Leila","full_name":"Mansouri, Leila","last_name":"Mansouri"},{"first_name":"Athanasios","full_name":"Baltzis, Athanasios","last_name":"Baltzis"},{"first_name":"Hafid","full_name":"Laayouni, Hafid","last_name":"Laayouni"},{"first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","full_name":"Kondrashov, Fyodor","last_name":"Kondrashov","orcid":"0000-0001-8243-4694"},{"first_name":"Evan","full_name":"Floden, Evan","last_name":"Floden"},{"first_name":"Cedric","full_name":"Notredame, Cedric","last_name":"Notredame"}],"title":"Large multiple sequence alignments with a root-to-leaf regressive method","date_updated":"2025-07-10T11:54:19Z","related_material":{"record":[{"id":"13059","relation":"research_data","status":"public"}]},"page":"1466-1470","year":"2019","publication_identifier":{"eissn":["1546-1696"],"issn":["1087-0156"]},"article_type":"original","ec_funded":1,"oa":1,"day":"01","doi":"10.1038/s41587-019-0333-6","date_published":"2019-12-01T00:00:00Z","intvolume":"        37","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"grant_number":"771209","name":"Characterizing the fitness landscape on population and global scales","_id":"26580278-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"isi":1,"publication":"Nature Biotechnology","external_id":{"isi":["000500748900021"],"pmid":["31792410"]},"publication_status":"published","date_created":"2019-12-15T23:00:43Z","month":"12","scopus_import":"1","issue":"12","_id":"7181","citation":{"mla":"Garriga, Edgar, et al. “Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method.” <i>Nature Biotechnology</i>, vol. 37, no. 12, Springer Nature, 2019, pp. 1466–70, doi:<a href=\"https://doi.org/10.1038/s41587-019-0333-6\">10.1038/s41587-019-0333-6</a>.","chicago":"Garriga, Edgar, Paolo Di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, and Cedric Notredame. “Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method.” <i>Nature Biotechnology</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41587-019-0333-6\">https://doi.org/10.1038/s41587-019-0333-6</a>.","ista":"Garriga E, Di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Laayouni H, Kondrashov F, Floden E, Notredame C. 2019. Large multiple sequence alignments with a root-to-leaf regressive method. Nature Biotechnology. 37(12), 1466–1470.","ieee":"E. Garriga <i>et al.</i>, “Large multiple sequence alignments with a root-to-leaf regressive method,” <i>Nature Biotechnology</i>, vol. 37, no. 12. Springer Nature, pp. 1466–1470, 2019.","ama":"Garriga E, Di Tommaso P, Magis C, et al. Large multiple sequence alignments with a root-to-leaf regressive method. <i>Nature Biotechnology</i>. 2019;37(12):1466-1470. doi:<a href=\"https://doi.org/10.1038/s41587-019-0333-6\">10.1038/s41587-019-0333-6</a>","apa":"Garriga, E., Di Tommaso, P., Magis, C., Erb, I., Mansouri, L., Baltzis, A., … Notredame, C. (2019). Large multiple sequence alignments with a root-to-leaf regressive method. <i>Nature Biotechnology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41587-019-0333-6\">https://doi.org/10.1038/s41587-019-0333-6</a>","short":"E. Garriga, P. Di Tommaso, C. Magis, I. Erb, L. Mansouri, A. Baltzis, H. Laayouni, F. Kondrashov, E. Floden, C. Notredame, Nature Biotechnology 37 (2019) 1466–1470."},"type":"journal_article","pmid":1,"abstract":[{"text":"Multiple sequence alignments (MSAs) are used for structural1,2 and evolutionary predictions1,2, but the complexity of aligning large datasets requires the use of approximate solutions3, including the progressive algorithm4. Progressive MSA methods start by aligning the most similar sequences and subsequently incorporate the remaining sequences, from leaf-to-root, based on a guide-tree. Their accuracy declines substantially as the number of sequences is scaled up5. We introduce a regressive algorithm that enables MSA of up to 1.4 million sequences on a standard workstation and substantially improves accuracy on datasets larger than 10,000 sequences. Our regressive algorithm works the other way around to the progressive algorithm and begins by aligning the most dissimilar sequences. It uses an efficient divide-and-conquer strategy to run third-party alignment methods in linear time, regardless of their original complexity. Our approach will enable analyses of extremely large genomic datasets such as the recently announced Earth BioGenome Project, which comprises 1.5 million eukaryotic genomes6.","lang":"eng"}],"quality_controlled":"1","publisher":"Springer Nature","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6894943/"}],"volume":37,"department":[{"_id":"FyKo"}]},{"external_id":{"arxiv":["1908.02483"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","date_created":"2019-12-17T13:03:41Z","month":"12","issue":"3","scopus_import":"1","_id":"7190","citation":{"short":"D. Huber, H.-W. Hammer, A. Volosniev, Physical Review Research 1 (2019).","ista":"Huber D, Hammer H-W, Volosniev A. 2019. In-medium bound states of two bosonic impurities in a one-dimensional Fermi gas. Physical Review Research. 1(3), 033177.","chicago":"Huber, D., H.-W. Hammer, and Artem Volosniev. “In-Medium Bound States of Two Bosonic Impurities in a One-Dimensional Fermi Gas.” <i>Physical Review Research</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/physrevresearch.1.033177\">https://doi.org/10.1103/physrevresearch.1.033177</a>.","mla":"Huber, D., et al. “In-Medium Bound States of Two Bosonic Impurities in a One-Dimensional Fermi Gas.” <i>Physical Review Research</i>, vol. 1, no. 3, 033177, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/physrevresearch.1.033177\">10.1103/physrevresearch.1.033177</a>.","ieee":"D. Huber, H.-W. Hammer, and A. Volosniev, “In-medium bound states of two bosonic impurities in a one-dimensional Fermi gas,” <i>Physical Review Research</i>, vol. 1, no. 3. American Physical Society, 2019.","ama":"Huber D, Hammer H-W, Volosniev A. In-medium bound states of two bosonic impurities in a one-dimensional Fermi gas. <i>Physical Review Research</i>. 2019;1(3). doi:<a href=\"https://doi.org/10.1103/physrevresearch.1.033177\">10.1103/physrevresearch.1.033177</a>","apa":"Huber, D., Hammer, H.-W., &#38; Volosniev, A. (2019). In-medium bound states of two bosonic impurities in a one-dimensional Fermi gas. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevresearch.1.033177\">https://doi.org/10.1103/physrevresearch.1.033177</a>"},"abstract":[{"lang":"eng","text":"We investigate the ground-state energy of a one-dimensional Fermi gas with two bosonic impurities. We consider spinless fermions with no fermion-fermion interactions. The fermion-impurity and impurity-impurity interactions are modeled with Dirac delta functions. First, we study the case where impurity and fermion have equal masses, and the impurity-impurity two-body interaction is identical to the fermion-impurity interaction, such that the system is solvable with the Bethe ansatz. For attractive interactions, we find that the energy of the impurity-impurity subsystem is below the energy of the bound state that exists without the Fermi gas. We interpret this as a manifestation of attractive boson-boson interactions induced by the fermionic medium, and refer to the impurity-impurity subsystem as an in-medium bound state. For repulsive interactions, we find no in-medium bound states. Second, we construct an effective model to describe these interactions, and compare its predictions to the exact solution. We use this effective model to study nonintegrable systems with unequal masses and/or potentials. We discuss parameter regimes for which impurity-impurity attraction induced by the Fermi gas can lead to the formation of in-medium bound states made of bosons that repel each other in the absence of the Fermi gas."}],"type":"journal_article","quality_controlled":"1","corr_author":"1","publisher":"American Physical Society","volume":1,"department":[{"_id":"MiLe"}],"oa_version":"Published Version","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:52Z","title":"In-medium bound states of two bosonic impurities in a one-dimensional Fermi gas","author":[{"last_name":"Huber","full_name":"Huber, D.","first_name":"D."},{"full_name":"Hammer, H.-W.","last_name":"Hammer","first_name":"H.-W."},{"orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem","last_name":"Volosniev","first_name":"Artem"}],"date_updated":"2025-04-14T07:44:06Z","article_number":"033177","publication_identifier":{"issn":["2643-1564"]},"year":"2019","article_type":"original","ec_funded":1,"oa":1,"file":[{"file_id":"7193","date_updated":"2020-07-14T12:47:52Z","relation":"main_file","checksum":"382eb67e62a77052a23887332d363f96","content_type":"application/pdf","date_created":"2019-12-18T07:13:14Z","file_name":"2019_PhysRevResearch_Huber.pdf","file_size":1370022,"creator":"dernst","access_level":"open_access"}],"doi":"10.1103/physrevresearch.1.033177","day":"16","date_published":"2019-12-16T00:00:00Z","intvolume":"         1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020"}],"ddc":["530"],"publication":"Physical Review Research","arxiv":1},{"type":"journal_article","abstract":[{"text":"We consider the totally asymmetric simple exclusion process (TASEP) with non-random initial condition having density ρ on ℤ− and λ on ℤ+, and a second class particle initially at the origin. For ρ&lt;λ, there is a shock and the second class particle moves with speed 1−λ−ρ. For large time t, we show that the position of the second class particle fluctuates on a t1/3 scale and determine its limiting law. We also obtain the limiting distribution of the number of steps made by the second class particle until time t.","lang":"eng"}],"citation":{"apa":"Ferrari, P., Ghosal, P., &#38; Nejjar, P. (2019). Limit law of a second class particle in TASEP with non-random initial condition. <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/18-AIHP916\">https://doi.org/10.1214/18-AIHP916</a>","ieee":"P. Ferrari, P. Ghosal, and P. Nejjar, “Limit law of a second class particle in TASEP with non-random initial condition,” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>, vol. 55, no. 3. Institute of Mathematical Statistics, pp. 1203–1225, 2019.","ama":"Ferrari P, Ghosal P, Nejjar P. Limit law of a second class particle in TASEP with non-random initial condition. <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. 2019;55(3):1203-1225. doi:<a href=\"https://doi.org/10.1214/18-AIHP916\">10.1214/18-AIHP916</a>","mla":"Ferrari, Patrick, et al. “Limit Law of a Second Class Particle in TASEP with Non-Random Initial Condition.” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>, vol. 55, no. 3, Institute of Mathematical Statistics, 2019, pp. 1203–25, doi:<a href=\"https://doi.org/10.1214/18-AIHP916\">10.1214/18-AIHP916</a>.","chicago":"Ferrari, Patrick, Promit Ghosal, and Peter Nejjar. “Limit Law of a Second Class Particle in TASEP with Non-Random Initial Condition.” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. Institute of Mathematical Statistics, 2019. <a href=\"https://doi.org/10.1214/18-AIHP916\">https://doi.org/10.1214/18-AIHP916</a>.","ista":"Ferrari P, Ghosal P, Nejjar P. 2019. Limit law of a second class particle in TASEP with non-random initial condition. Annales de l’institut Henri Poincare (B) Probability and Statistics. 55(3), 1203–1225.","short":"P. Ferrari, P. Ghosal, P. Nejjar, Annales de l’institut Henri Poincare (B) Probability and Statistics 55 (2019) 1203–1225."},"quality_controlled":"1","volume":55,"department":[{"_id":"LaEr"},{"_id":"JaMa"}],"publisher":"Institute of Mathematical Statistics","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1710.02323"}],"publication_status":"published","date_created":"2018-12-11T11:44:29Z","external_id":{"isi":["000487763200001"],"arxiv":["1710.02323"]},"_id":"72","month":"09","issue":"3","scopus_import":"1","day":"25","doi":"10.1214/18-AIHP916","oa":1,"intvolume":"        55","date_published":"2019-09-25T00:00:00Z","ec_funded":1,"year":"2019","publication_identifier":{"issn":["0246-0203"]},"article_type":"original","arxiv":1,"publication":"Annales de l'institut Henri Poincare (B) Probability and Statistics","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"name":"Random matrices, universality and disordered quantum systems","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804","call_identifier":"FP7"},{"call_identifier":"H2020","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","name":"Optimal Transport and Stochastic Dynamics"}],"oa_version":"Preprint","title":"Limit law of a second class particle in TASEP with non-random initial condition","author":[{"first_name":"Patrick","last_name":"Ferrari","full_name":"Ferrari, Patrick"},{"last_name":"Ghosal","full_name":"Ghosal, Promit","first_name":"Promit"},{"first_name":"Peter","full_name":"Nejjar, Peter","last_name":"Nejjar","id":"4BF426E2-F248-11E8-B48F-1D18A9856A87"}],"page":"1203-1225","date_updated":"2025-04-14T07:27:49Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No"},{"_id":"7200","issue":"17","scopus_import":"1","month":"11","date_created":"2019-12-22T23:00:41Z","publication_status":"published","external_id":{"isi":["000498845700006"],"arxiv":["1907.13579"]},"department":[{"_id":"MaSe"}],"volume":100,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1907.13579"}],"publisher":"American Physical Society","quality_controlled":"1","citation":{"short":"P. Brighi, M. Grilli, B. Leridon, S. Caprara, Physical Review B 100 (2019).","ama":"Brighi P, Grilli M, Leridon B, Caprara S. Effect of anomalous diffusion of fluctuating Cooper pairs on the density of states of superconducting NbN thin films. <i>Physical Review B</i>. 2019;100(17). doi:<a href=\"https://doi.org/10.1103/PhysRevB.100.174518\">10.1103/PhysRevB.100.174518</a>","apa":"Brighi, P., Grilli, M., Leridon, B., &#38; Caprara, S. (2019). Effect of anomalous diffusion of fluctuating Cooper pairs on the density of states of superconducting NbN thin films. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.100.174518\">https://doi.org/10.1103/PhysRevB.100.174518</a>","ieee":"P. Brighi, M. Grilli, B. Leridon, and S. Caprara, “Effect of anomalous diffusion of fluctuating Cooper pairs on the density of states of superconducting NbN thin films,” <i>Physical Review B</i>, vol. 100, no. 17. American Physical Society, 2019.","chicago":"Brighi, Pietro, Marco Grilli, Brigitte Leridon, and Sergio Caprara. “Effect of Anomalous Diffusion of Fluctuating Cooper Pairs on the Density of States of Superconducting NbN Thin Films.” <i>Physical Review B</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/PhysRevB.100.174518\">https://doi.org/10.1103/PhysRevB.100.174518</a>.","ista":"Brighi P, Grilli M, Leridon B, Caprara S. 2019. Effect of anomalous diffusion of fluctuating Cooper pairs on the density of states of superconducting NbN thin films. Physical Review B. 100(17), 174518.","mla":"Brighi, Pietro, et al. “Effect of Anomalous Diffusion of Fluctuating Cooper Pairs on the Density of States of Superconducting NbN Thin Films.” <i>Physical Review B</i>, vol. 100, no. 17, 174518, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/PhysRevB.100.174518\">10.1103/PhysRevB.100.174518</a>."},"abstract":[{"text":"Recent scanning tunneling microscopy experiments in NbN thin disordered superconducting films found an emergent inhomogeneity at the scale of tens of nanometers. This inhomogeneity is mirrored by an apparent dimensional crossover in the paraconductivity measured in transport above the superconducting critical temperature Tc. This behavior was interpreted in terms of an anomalous diffusion of fluctuating Cooper pairs that display a quasiconfinement (i.e., a slowing down of their diffusive dynamics) on length scales shorter than the inhomogeneity identified by tunneling experiments. Here, we assume this anomalous diffusive behavior of fluctuating Cooper pairs and calculate the effect of these fluctuations on the electron density of states above Tc. We find that the density of states is substantially suppressed up to temperatures well above Tc. This behavior, which is closely reminiscent of a pseudogap, only arises from the anomalous diffusion of fluctuating Cooper pairs in the absence of stable preformed pairs, setting the stage for an intermediate behavior between the two common paradigms in the superconducting-insulator transition, namely, the localization of Cooper pairs (the so-called bosonic scenario) and the breaking of Cooper pairs into unpaired electrons due to strong disorder (the so-called fermionic scenario).","lang":"eng"}],"type":"journal_article","date_updated":"2024-02-28T13:14:08Z","title":"Effect of anomalous diffusion of fluctuating Cooper pairs on the density of states of superconducting NbN thin films","author":[{"orcid":"0000-0002-7969-2729","full_name":"Brighi, Pietro","last_name":"Brighi","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","first_name":"Pietro"},{"full_name":"Grilli, Marco","last_name":"Grilli","first_name":"Marco"},{"full_name":"Leridon, Brigitte","last_name":"Leridon","first_name":"Brigitte"},{"first_name":"Sergio","full_name":"Caprara, Sergio","last_name":"Caprara"}],"article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"oa_version":"Preprint","isi":1,"arxiv":1,"publication":"Physical Review B","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2019-11-25T00:00:00Z","intvolume":"       100","oa":1,"doi":"10.1103/PhysRevB.100.174518","day":"25","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"article_type":"original","year":"2019","article_number":"174518"},{"project":[{"call_identifier":"H2020","grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425","name":"Elastic Coordination for Scalable Machine Learning"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"arxiv":1,"publication":"International Conference for High Performance Computing, Networking, Storage and Analysis, SC","article_number":"a11","year":"2019","publication_identifier":{"issn":["2167-4329"],"isbn":["9781450362290"],"eissn":["2167-4337"]},"ec_funded":1,"oa":1,"doi":"10.1145/3295500.3356222","day":"17","date_published":"2019-11-17T00:00:00Z","language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","author":[{"first_name":"Cedric","last_name":"Renggli","full_name":"Renggli, Cedric"},{"id":"0D0A9058-257B-11EA-A937-9341C3D8BC8A","full_name":"Ashkboos, Saleh","last_name":"Ashkboos","first_name":"Saleh"},{"last_name":"Aghagolzadeh","full_name":"Aghagolzadeh, Mehdi","first_name":"Mehdi"},{"first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X"},{"full_name":"Hoefler, Torsten","last_name":"Hoefler","first_name":"Torsten"}],"title":"SparCML: High-performance sparse communication for machine learning","date_updated":"2025-07-10T11:54:21Z","oa_version":"Preprint","publisher":"ACM","main_file_link":[{"url":"https://arxiv.org/abs/1802.08021","open_access":"1"}],"department":[{"_id":"DaAl"}],"citation":{"short":"C. Renggli, S. Ashkboos, M. Aghagolzadeh, D.-A. Alistarh, T. Hoefler, in:, International Conference for High Performance Computing, Networking, Storage and Analysis, SC, ACM, 2019.","mla":"Renggli, Cedric, et al. “SparCML: High-Performance Sparse Communication for Machine Learning.” <i>International Conference for High Performance Computing, Networking, Storage and Analysis, SC</i>, a11, ACM, 2019, doi:<a href=\"https://doi.org/10.1145/3295500.3356222\">10.1145/3295500.3356222</a>.","chicago":"Renggli, Cedric, Saleh Ashkboos, Mehdi Aghagolzadeh, Dan-Adrian Alistarh, and Torsten Hoefler. “SparCML: High-Performance Sparse Communication for Machine Learning.” In <i>International Conference for High Performance Computing, Networking, Storage and Analysis, SC</i>. ACM, 2019. <a href=\"https://doi.org/10.1145/3295500.3356222\">https://doi.org/10.1145/3295500.3356222</a>.","ista":"Renggli C, Ashkboos S, Aghagolzadeh M, Alistarh D-A, Hoefler T. 2019. SparCML: High-performance sparse communication for machine learning. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. SC: Conference for High Performance Computing, Networking, Storage and Analysis, a11.","ieee":"C. Renggli, S. Ashkboos, M. Aghagolzadeh, D.-A. Alistarh, and T. Hoefler, “SparCML: High-performance sparse communication for machine learning,” in <i>International Conference for High Performance Computing, Networking, Storage and Analysis, SC</i>, Denver, CO, Unites States, 2019.","ama":"Renggli C, Ashkboos S, Aghagolzadeh M, Alistarh D-A, Hoefler T. SparCML: High-performance sparse communication for machine learning. In: <i>International Conference for High Performance Computing, Networking, Storage and Analysis, SC</i>. ACM; 2019. doi:<a href=\"https://doi.org/10.1145/3295500.3356222\">10.1145/3295500.3356222</a>","apa":"Renggli, C., Ashkboos, S., Aghagolzadeh, M., Alistarh, D.-A., &#38; Hoefler, T. (2019). SparCML: High-performance sparse communication for machine learning. In <i>International Conference for High Performance Computing, Networking, Storage and Analysis, SC</i>. Denver, CO, Unites States: ACM. <a href=\"https://doi.org/10.1145/3295500.3356222\">https://doi.org/10.1145/3295500.3356222</a>"},"abstract":[{"text":"Applying machine learning techniques to the quickly growing data in science and industry requires highly-scalable algorithms. Large datasets are most commonly processed \"data parallel\" distributed across many nodes. Each node's contribution to the overall gradient is summed using a global allreduce. This allreduce is the single communication and thus scalability bottleneck for most machine learning workloads. We observe that frequently, many gradient values are (close to) zero, leading to sparse of sparsifyable communications. To exploit this insight, we analyze, design, and implement a set of communication-efficient protocols for sparse input data, in conjunction with efficient machine learning algorithms which can leverage these primitives. Our communication protocols generalize standard collective operations, by allowing processes to contribute arbitrary sparse input data vectors. Our generic communication library, SparCML1, extends MPI to support additional features, such as non-blocking (asynchronous) operations and low-precision data representations. As such, SparCML and its techniques will form the basis of future highly-scalable machine learning frameworks.","lang":"eng"}],"type":"conference","quality_controlled":"1","month":"11","scopus_import":"1","_id":"7201","conference":{"location":"Denver, CO, Unites States","name":"SC: Conference for High Performance Computing, Networking, Storage and Analysis","start_date":"2019-11-17","end_date":"2019-11-19"},"external_id":{"isi":["000545976800011"],"arxiv":["1802.08021"]},"publication_status":"published","date_created":"2019-12-22T23:00:42Z"},{"department":[{"_id":"HeEd"}],"isi":1,"publication":"2019 IEEE Intelligent Transportation Systems Conference","publisher":"IEEE","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_published":"2019-11-28T00:00:00Z","quality_controlled":"1","citation":{"short":"G.F. Osang, J. Cook, A. Fabrikant, M. Gruteser, in:, 2019 IEEE Intelligent Transportation Systems Conference, IEEE, 2019.","apa":"Osang, G. F., Cook, J., Fabrikant, A., &#38; Gruteser, M. (2019). LiveTraVeL: Real-time matching of transit vehicle trajectories to transit routes at scale. In <i>2019 IEEE Intelligent Transportation Systems Conference</i>. Auckland, New Zealand: IEEE. <a href=\"https://doi.org/10.1109/ITSC.2019.8917514\">https://doi.org/10.1109/ITSC.2019.8917514</a>","ama":"Osang GF, Cook J, Fabrikant A, Gruteser M. LiveTraVeL: Real-time matching of transit vehicle trajectories to transit routes at scale. In: <i>2019 IEEE Intelligent Transportation Systems Conference</i>. IEEE; 2019. doi:<a href=\"https://doi.org/10.1109/ITSC.2019.8917514\">10.1109/ITSC.2019.8917514</a>","ieee":"G. F. Osang, J. Cook, A. Fabrikant, and M. Gruteser, “LiveTraVeL: Real-time matching of transit vehicle trajectories to transit routes at scale,” in <i>2019 IEEE Intelligent Transportation Systems Conference</i>, Auckland, New Zealand, 2019.","mla":"Osang, Georg F., et al. “LiveTraVeL: Real-Time Matching of Transit Vehicle Trajectories to Transit Routes at Scale.” <i>2019 IEEE Intelligent Transportation Systems Conference</i>, 8917514, IEEE, 2019, doi:<a href=\"https://doi.org/10.1109/ITSC.2019.8917514\">10.1109/ITSC.2019.8917514</a>.","ista":"Osang GF, Cook J, Fabrikant A, Gruteser M. 2019. LiveTraVeL: Real-time matching of transit vehicle trajectories to transit routes at scale. 2019 IEEE Intelligent Transportation Systems Conference. ITSC: Intelligent Transportation Systems Conference, 8917514.","chicago":"Osang, Georg F, James Cook, Alex Fabrikant, and Marco Gruteser. “LiveTraVeL: Real-Time Matching of Transit Vehicle Trajectories to Transit Routes at Scale.” In <i>2019 IEEE Intelligent Transportation Systems Conference</i>. IEEE, 2019. <a href=\"https://doi.org/10.1109/ITSC.2019.8917514\">https://doi.org/10.1109/ITSC.2019.8917514</a>."},"day":"28","doi":"10.1109/ITSC.2019.8917514","abstract":[{"lang":"eng","text":"We present LiveTraVeL (Live Transit Vehicle Labeling), a real-time system to label a stream of noisy observations of transit vehicle trajectories with the transit routes they are serving (e.g., northbound bus #5). In order to scale efficiently to large transit networks, our system first retrieves a small set of candidate routes from a geometrically indexed data structure, then applies a fine-grained scoring step to choose the best match. Given that real-time data remains unavailable for the majority of the world’s transit agencies, these inferences can help feed a real-time map of a transit system’s trips, infer transit trip delays in real time, or measure and correct noisy transit tracking data. This system can run on vehicle observations from a variety of sources that don’t attach route information to vehicle observations, such as public imagery streams or user-contributed transit vehicle sightings.We abstract away the specifics of the sensing system and demonstrate the effectiveness of our system on a \"semisynthetic\" dataset of all New York City buses, where we simulate sensed trajectories by starting with fully labeled vehicle trajectories reported via the GTFS-Realtime protocol, removing the transit route IDs, and perturbing locations with synthetic noise. Using just the geometric shapes of the trajectories, we demonstrate that our system converges on the correct route ID within a few minutes, even after a vehicle switches from serving one trip to the next."}],"type":"conference","year":"2019","publication_identifier":{"isbn":["9781538670248"]},"article_number":"8917514","_id":"7216","date_updated":"2023-09-06T14:50:28Z","author":[{"full_name":"Osang, Georg F","last_name":"Osang","id":"464B40D6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8882-5116","first_name":"Georg F"},{"full_name":"Cook, James","last_name":"Cook","first_name":"James"},{"last_name":"Fabrikant","full_name":"Fabrikant, Alex","first_name":"Alex"},{"last_name":"Gruteser","full_name":"Gruteser, Marco","first_name":"Marco"}],"title":"LiveTraVeL: Real-time matching of transit vehicle trajectories to transit routes at scale","article_processing_charge":"No","scopus_import":"1","month":"11","language":[{"iso":"eng"}],"status":"public","oa_version":"None","date_created":"2019-12-29T23:00:47Z","publication_status":"published","external_id":{"isi":["000521238102050"]},"conference":{"end_date":"2019-10-30","name":"ITSC: Intelligent Transportation Systems Conference","location":"Auckland, New Zealand","start_date":"2019-10-27"}},{"oa_version":"Published Version","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:54Z","title":"Introduction to the Special Collection: International Congress on Mathematical Physics (ICMP) 2018","author":[{"full_name":"Jaksic, Vojkan","last_name":"Jaksic","first_name":"Vojkan"},{"first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","last_name":"Seiringer"}],"date_updated":"2025-07-10T11:54:25Z","article_number":"123504","year":"2019","article_type":"letter_note","publication_identifier":{"issn":["0022-2488"]},"file":[{"date_updated":"2020-07-14T12:47:54Z","file_id":"7244","checksum":"bbd12ad1999a9ad7ba4d3c6f2e579c22","content_type":"application/pdf","relation":"main_file","creator":"dernst","file_size":1025015,"file_name":"2019_JournalMathPhysics_Jaksic.pdf","date_created":"2020-01-07T14:59:13Z","access_level":"open_access"}],"oa":1,"doi":"10.1063/1.5138135","day":"01","date_published":"2019-12-01T00:00:00Z","intvolume":"        60","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["500"],"isi":1,"publication":"Journal of Mathematical Physics","external_id":{"isi":["000505529800002"]},"publication_status":"published","date_created":"2020-01-05T23:00:46Z","month":"12","scopus_import":"1","issue":"12","_id":"7226","citation":{"ista":"Jaksic V, Seiringer R. 2019. Introduction to the Special Collection: International Congress on Mathematical Physics (ICMP) 2018. Journal of Mathematical Physics. 60(12), 123504.","chicago":"Jaksic, Vojkan, and Robert Seiringer. “Introduction to the Special Collection: International Congress on Mathematical Physics (ICMP) 2018.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2019. <a href=\"https://doi.org/10.1063/1.5138135\">https://doi.org/10.1063/1.5138135</a>.","mla":"Jaksic, Vojkan, and Robert Seiringer. “Introduction to the Special Collection: International Congress on Mathematical Physics (ICMP) 2018.” <i>Journal of Mathematical Physics</i>, vol. 60, no. 12, 123504, AIP Publishing, 2019, doi:<a href=\"https://doi.org/10.1063/1.5138135\">10.1063/1.5138135</a>.","apa":"Jaksic, V., &#38; Seiringer, R. (2019). Introduction to the Special Collection: International Congress on Mathematical Physics (ICMP) 2018. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.5138135\">https://doi.org/10.1063/1.5138135</a>","ieee":"V. Jaksic and R. Seiringer, “Introduction to the Special Collection: International Congress on Mathematical Physics (ICMP) 2018,” <i>Journal of Mathematical Physics</i>, vol. 60, no. 12. AIP Publishing, 2019.","ama":"Jaksic V, Seiringer R. Introduction to the Special Collection: International Congress on Mathematical Physics (ICMP) 2018. <i>Journal of Mathematical Physics</i>. 2019;60(12). doi:<a href=\"https://doi.org/10.1063/1.5138135\">10.1063/1.5138135</a>","short":"V. Jaksic, R. Seiringer, Journal of Mathematical Physics 60 (2019)."},"type":"journal_article","quality_controlled":"1","publisher":"AIP Publishing","volume":60,"department":[{"_id":"RoSe"}]},{"_id":"7228","month":"08","scopus_import":"1","publication_status":"published","date_created":"2020-01-05T23:00:46Z","conference":{"end_date":"2019-08-30","start_date":"2019-08-26","location":"Göttingen, Germany","name":"Euro-Par: European Conference on Parallel Processing"},"external_id":{"isi":["000851061400023"]},"alternative_title":["LNCS"],"volume":11725,"department":[{"_id":"DaAl"}],"publisher":"Springer Nature","abstract":[{"text":"Traditional concurrent programming involves manipulating shared mutable state. Alternatives to this programming style are communicating sequential processes (CSP) and actor models, which share data via explicit communication. These models have been known for almost half a century, and have recently had started to gain significant traction among modern programming languages. The common abstraction for communication between several processes is the channel. Although channels are similar to producer-consumer data structures, they have different semantics and support additional operations, such as the select expression. Despite their growing popularity, most known implementations of channels use lock-based data structures and can be rather inefficient.\r\n\r\nIn this paper, we present the first efficient lock-free algorithm for implementing a communication channel for CSP programming. We provide implementations and experimental results in the Kotlin and Go programming languages. Our new algorithm outperforms existing implementations on many workloads, while providing non-blocking progress guarantee. Our design can serve as an example of how to construct general communication data structures for CSP and actor models. ","lang":"eng"}],"type":"conference","citation":{"short":"N. Koval, D.-A. Alistarh, R. Elizarov, in:, 25th Anniversary of Euro-Par, Springer Nature, 2019, pp. 317–333.","mla":"Koval, Nikita, et al. “Scalable FIFO Channels for Programming via Communicating Sequential Processes.” <i>25th Anniversary of Euro-Par</i>, vol. 11725, Springer Nature, 2019, pp. 317–33, doi:<a href=\"https://doi.org/10.1007/978-3-030-29400-7_23\">10.1007/978-3-030-29400-7_23</a>.","chicago":"Koval, Nikita, Dan-Adrian Alistarh, and Roman Elizarov. “Scalable FIFO Channels for Programming via Communicating Sequential Processes.” In <i>25th Anniversary of Euro-Par</i>, 11725:317–33. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/978-3-030-29400-7_23\">https://doi.org/10.1007/978-3-030-29400-7_23</a>.","ista":"Koval N, Alistarh D-A, Elizarov R. 2019. Scalable FIFO channels for programming via communicating sequential processes. 25th Anniversary of Euro-Par. Euro-Par: European Conference on Parallel Processing, LNCS, vol. 11725, 317–333.","ieee":"N. Koval, D.-A. Alistarh, and R. Elizarov, “Scalable FIFO channels for programming via communicating sequential processes,” in <i>25th Anniversary of Euro-Par</i>, Göttingen, Germany, 2019, vol. 11725, pp. 317–333.","ama":"Koval N, Alistarh D-A, Elizarov R. Scalable FIFO channels for programming via communicating sequential processes. In: <i>25th Anniversary of Euro-Par</i>. Vol 11725. Springer Nature; 2019:317-333. doi:<a href=\"https://doi.org/10.1007/978-3-030-29400-7_23\">10.1007/978-3-030-29400-7_23</a>","apa":"Koval, N., Alistarh, D.-A., &#38; Elizarov, R. (2019). Scalable FIFO channels for programming via communicating sequential processes. In <i>25th Anniversary of Euro-Par</i> (Vol. 11725, pp. 317–333). Göttingen, Germany: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-29400-7_23\">https://doi.org/10.1007/978-3-030-29400-7_23</a>"},"quality_controlled":"1","title":"Scalable FIFO channels for programming via communicating sequential processes","author":[{"id":"2F4DB10C-F248-11E8-B48F-1D18A9856A87","last_name":"Koval","full_name":"Koval, Nikita","first_name":"Nikita"},{"full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X","first_name":"Dan-Adrian"},{"full_name":"Elizarov, Roman","last_name":"Elizarov","first_name":"Roman"}],"page":"317-333","date_updated":"2023-09-06T14:53:59Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","oa_version":"None","publication":"25th Anniversary of Euro-Par","isi":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","doi":"10.1007/978-3-030-29400-7_23","day":"13","intvolume":"     11725","date_published":"2019-08-13T00:00:00Z","publication_identifier":{"isbn":["978-3-0302-9399-4"],"eissn":["1611-3349"],"issn":["0302-9743"]},"year":"2019"},{"oa":1,"day":"28","doi":"10.1007/978-3-030-35802-0_18","date_published":"2019-11-28T00:00:00Z","intvolume":"     11904","publication_identifier":{"eissn":["1611-3349"],"isbn":["978-3-0303-5801-3"],"issn":["0302-9743"]},"year":"2019","ec_funded":1,"isi":1,"arxiv":1,"publication":"27th International Symposium on Graph Drawing and Network Visualization","project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Preprint","title":"Extending simple drawings","author":[{"first_name":"Alan M","orcid":"0000-0003-2401-8670","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","last_name":"Arroyo Guevara","full_name":"Arroyo Guevara, Alan M"},{"first_name":"Martin","last_name":"Derka","full_name":"Derka, Martin"},{"first_name":"Irene","last_name":"Parada","full_name":"Parada, Irene"}],"date_updated":"2025-04-14T07:44:07Z","page":"230-243","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","citation":{"short":"A.M. Arroyo Guevara, M. Derka, I. Parada, in:, 27th International Symposium on Graph Drawing and Network Visualization, Springer Nature, 2019, pp. 230–243.","ieee":"A. M. Arroyo Guevara, M. Derka, and I. Parada, “Extending simple drawings,” in <i>27th International Symposium on Graph Drawing and Network Visualization</i>, Prague, Czech Republic, 2019, vol. 11904, pp. 230–243.","apa":"Arroyo Guevara, A. M., Derka, M., &#38; Parada, I. (2019). Extending simple drawings. In <i>27th International Symposium on Graph Drawing and Network Visualization</i> (Vol. 11904, pp. 230–243). Prague, Czech Republic: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-35802-0_18\">https://doi.org/10.1007/978-3-030-35802-0_18</a>","ama":"Arroyo Guevara AM, Derka M, Parada I. Extending simple drawings. In: <i>27th International Symposium on Graph Drawing and Network Visualization</i>. Vol 11904. Springer Nature; 2019:230-243. doi:<a href=\"https://doi.org/10.1007/978-3-030-35802-0_18\">10.1007/978-3-030-35802-0_18</a>","mla":"Arroyo Guevara, Alan M., et al. “Extending Simple Drawings.” <i>27th International Symposium on Graph Drawing and Network Visualization</i>, vol. 11904, Springer Nature, 2019, pp. 230–43, doi:<a href=\"https://doi.org/10.1007/978-3-030-35802-0_18\">10.1007/978-3-030-35802-0_18</a>.","ista":"Arroyo Guevara AM, Derka M, Parada I. 2019. Extending simple drawings. 27th International Symposium on Graph Drawing and Network Visualization. GD: Graph Drawing and Network Visualization, LNCS, vol. 11904, 230–243.","chicago":"Arroyo Guevara, Alan M, Martin Derka, and Irene Parada. “Extending Simple Drawings.” In <i>27th International Symposium on Graph Drawing and Network Visualization</i>, 11904:230–43. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/978-3-030-35802-0_18\">https://doi.org/10.1007/978-3-030-35802-0_18</a>."},"type":"conference","abstract":[{"text":"Simple drawings of graphs are those in which each pair of edges share at most one point, either a common endpoint or a proper crossing. In this paper we study the problem of extending a simple drawing D(G) of a graph G by inserting a set of edges from the complement of G into D(G) such that the result is a simple drawing. In the context of rectilinear drawings, the problem is trivial. For pseudolinear drawings, the existence of such an extension follows from Levi’s enlargement lemma. In contrast, we prove that deciding if a given set of edges can be inserted into a simple drawing is NP-complete. Moreover, we show that the maximization version of the problem is APX-hard. We also present a polynomial-time algorithm for deciding whether one edge uv can be inserted into D(G) when {u,v} is a dominating set for the graph G.","lang":"eng"}],"quality_controlled":"1","volume":11904,"department":[{"_id":"UlWa"}],"publisher":"Springer Nature","main_file_link":[{"url":"https://arxiv.org/abs/1908.08129","open_access":"1"}],"publication_status":"published","date_created":"2020-01-05T23:00:47Z","conference":{"end_date":"2019-09-20","location":"Prague, Czech Republic","name":"GD: Graph Drawing and Network Visualization","start_date":"2019-09-17"},"alternative_title":["LNCS"],"external_id":{"isi":["000612918800018"],"arxiv":["1908.08129"]},"_id":"7230","month":"11","scopus_import":"1"},{"month":"08","scopus_import":"1","_id":"7231","conference":{"end_date":"2019-08-29","start_date":"2019-08-27","name":"FORMATS: Formal Modeling and Analysis of Timed Systems","location":"Amsterdam, The Netherlands"},"external_id":{"arxiv":["1907.11514"],"isi":["000611677700008"]},"alternative_title":["LNCS"],"publication_status":"published","date_created":"2020-01-05T23:00:47Z","publisher":"Springer Nature","main_file_link":[{"url":"https://arxiv.org/abs/1907.11514","open_access":"1"}],"volume":11750,"department":[{"_id":"ToHe"}],"citation":{"short":"H. Kong, E. Bartocci, Y. Jiang, T.A. Henzinger, in:, 17th International Conference on Formal Modeling and Analysis of Timed Systems, Springer Nature, 2019, pp. 123–141.","mla":"Kong, Hui, et al. “Piecewise Robust Barrier Tubes for Nonlinear Hybrid Systems with Uncertainty.” <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>, vol. 11750, Springer Nature, 2019, pp. 123–41, doi:<a href=\"https://doi.org/10.1007/978-3-030-29662-9_8\">10.1007/978-3-030-29662-9_8</a>.","ista":"Kong H, Bartocci E, Jiang Y, Henzinger TA. 2019. Piecewise robust barrier tubes for nonlinear hybrid systems with uncertainty. 17th International Conference on Formal Modeling and Analysis of Timed Systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 11750, 123–141.","chicago":"Kong, Hui, Ezio Bartocci, Yu Jiang, and Thomas A Henzinger. “Piecewise Robust Barrier Tubes for Nonlinear Hybrid Systems with Uncertainty.” In <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>, 11750:123–41. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/978-3-030-29662-9_8\">https://doi.org/10.1007/978-3-030-29662-9_8</a>.","ieee":"H. Kong, E. Bartocci, Y. Jiang, and T. A. Henzinger, “Piecewise robust barrier tubes for nonlinear hybrid systems with uncertainty,” in <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>, Amsterdam, The Netherlands, 2019, vol. 11750, pp. 123–141.","ama":"Kong H, Bartocci E, Jiang Y, Henzinger TA. Piecewise robust barrier tubes for nonlinear hybrid systems with uncertainty. In: <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>. Vol 11750. Springer Nature; 2019:123-141. doi:<a href=\"https://doi.org/10.1007/978-3-030-29662-9_8\">10.1007/978-3-030-29662-9_8</a>","apa":"Kong, H., Bartocci, E., Jiang, Y., &#38; Henzinger, T. A. (2019). Piecewise robust barrier tubes for nonlinear hybrid systems with uncertainty. In <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i> (Vol. 11750, pp. 123–141). Amsterdam, The Netherlands: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-29662-9_8\">https://doi.org/10.1007/978-3-030-29662-9_8</a>"},"type":"conference","abstract":[{"lang":"eng","text":"Piecewise Barrier Tubes (PBT) is a new technique for flowpipe overapproximation for nonlinear systems with polynomial dynamics, which leverages a combination of barrier certificates. PBT has advantages over traditional time-step based methods in dealing with those nonlinear dynamical systems in which there is a large difference in speed between trajectories, producing an overapproximation that is time independent. However, the existing approach for PBT is not efficient due to the application of interval methods for enclosure-box computation, and it can only deal with continuous dynamical systems without uncertainty. In this paper, we extend the approach with the ability to handle both continuous and hybrid dynamical systems with uncertainty that can reside in parameters and/or noise. We also improve the efficiency of the method significantly, by avoiding the use of interval-based methods for the enclosure-box computation without loosing soundness. We have developed a C++ prototype implementing the proposed approach and we evaluate it on several benchmarks. The experiments show that our approach is more efficient and precise than other methods in the literature."}],"quality_controlled":"1","language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","title":"Piecewise robust barrier tubes for nonlinear hybrid systems with uncertainty","author":[{"first_name":"Hui","id":"3BDE25AA-F248-11E8-B48F-1D18A9856A87","last_name":"Kong","full_name":"Kong, Hui","orcid":"0000-0002-3066-6941"},{"first_name":"Ezio","full_name":"Bartocci, Ezio","last_name":"Bartocci"},{"first_name":"Yu","full_name":"Jiang, Yu","last_name":"Jiang"},{"first_name":"Thomas A","orcid":"0000−0002−2985−7724","full_name":"Henzinger, Thomas A","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"}],"date_updated":"2025-04-15T06:26:06Z","page":"123-141","oa_version":"Preprint","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"call_identifier":"FWF","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23"},{"grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory","call_identifier":"FWF"},{"grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425","name":"Formal methods for the design and analysis of complex systems","call_identifier":"FWF"}],"isi":1,"publication":"17th International Conference on Formal Modeling and Analysis of Timed Systems","arxiv":1,"publication_identifier":{"issn":["0302-9743"],"isbn":["978-3-0302-9661-2"],"eissn":["1611-3349"]},"year":"2019","oa":1,"doi":"10.1007/978-3-030-29662-9_8","day":"13","date_published":"2019-08-13T00:00:00Z","intvolume":"     11750"},{"language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","title":"Mixed-time signal temporal logic","author":[{"first_name":"Thomas","id":"40960E6E-F248-11E8-B48F-1D18A9856A87","last_name":"Ferrere","full_name":"Ferrere, Thomas","orcid":"0000-0001-5199-3143"},{"full_name":"Maler, Oded","last_name":"Maler","first_name":"Oded"},{"last_name":"Nickovic","full_name":"Nickovic, Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","first_name":"Dejan"}],"page":"59-75","date_updated":"2025-04-15T06:26:06Z","oa_version":"None","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","call_identifier":"FWF"},{"_id":"25F42A32-B435-11E9-9278-68D0E5697425","name":"Formal methods for the design and analysis of complex systems","grant_number":"Z211","call_identifier":"FWF"}],"publication":"17th International Conference on Formal Modeling and Analysis of Timed Systems","isi":1,"year":"2019","publication_identifier":{"issn":["0302-9743"],"isbn":["978-3-0302-9661-2"],"eissn":["1611-3349"]},"day":"13","doi":"10.1007/978-3-030-29662-9_4","intvolume":"     11750","date_published":"2019-08-13T00:00:00Z","month":"08","scopus_import":"1","_id":"7232","conference":{"end_date":"2019-08-29","start_date":"2019-08-27","name":"FORMATS: Formal Modeling and Anaysis of Timed Systems","location":"Amsterdam, The Netherlands"},"external_id":{"isi":["000611677700004"]},"alternative_title":["LNCS"],"publication_status":"published","date_created":"2020-01-05T23:00:48Z","publisher":"Springer Nature","volume":11750,"department":[{"_id":"ToHe"}],"abstract":[{"text":"We present Mixed-time Signal Temporal Logic (STL−MX), a specification formalism which extends STL by capturing the discrete/ continuous time duality found in many cyber-physical systems (CPS), as well as mixed-signal electronic designs. In STL−MX, properties of components with continuous dynamics are expressed in STL, while specifications of components with discrete dynamics are written in LTL. To combine the two layers, we evaluate formulas on two traces, discrete- and continuous-time, and introduce two interface operators that map signals, properties and their satisfaction signals across the two time domains. We show that STL-mx has the expressive power of STL supplemented with an implicit T-periodic clock signal. We develop and implement an algorithm for monitoring STL-mx formulas and illustrate the approach using a mixed-signal example. ","lang":"eng"}],"type":"conference","citation":{"short":"T. Ferrere, O. Maler, D. Nickovic, in:, 17th International Conference on Formal Modeling and Analysis of Timed Systems, Springer Nature, 2019, pp. 59–75.","chicago":"Ferrere, Thomas, Oded Maler, and Dejan Nickovic. “Mixed-Time Signal Temporal Logic.” In <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>, 11750:59–75. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/978-3-030-29662-9_4\">https://doi.org/10.1007/978-3-030-29662-9_4</a>.","ista":"Ferrere T, Maler O, Nickovic D. 2019. Mixed-time signal temporal logic. 17th International Conference on Formal Modeling and Analysis of Timed Systems. FORMATS: Formal Modeling and Anaysis of Timed Systems, LNCS, vol. 11750, 59–75.","mla":"Ferrere, Thomas, et al. “Mixed-Time Signal Temporal Logic.” <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>, vol. 11750, Springer Nature, 2019, pp. 59–75, doi:<a href=\"https://doi.org/10.1007/978-3-030-29662-9_4\">10.1007/978-3-030-29662-9_4</a>.","apa":"Ferrere, T., Maler, O., &#38; Nickovic, D. (2019). Mixed-time signal temporal logic. In <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i> (Vol. 11750, pp. 59–75). Amsterdam, The Netherlands: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-29662-9_4\">https://doi.org/10.1007/978-3-030-29662-9_4</a>","ama":"Ferrere T, Maler O, Nickovic D. Mixed-time signal temporal logic. In: <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>. Vol 11750. Springer Nature; 2019:59-75. doi:<a href=\"https://doi.org/10.1007/978-3-030-29662-9_4\">10.1007/978-3-030-29662-9_4</a>","ieee":"T. Ferrere, O. Maler, and D. Nickovic, “Mixed-time signal temporal logic,” in <i>17th International Conference on Formal Modeling and Analysis of Timed Systems</i>, Amsterdam, The Netherlands, 2019, vol. 11750, pp. 59–75."},"quality_controlled":"1"},{"publication":"Nonlinear Optics, OSA Technical Digest","department":[{"_id":"JoFi"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Optica Publishing Group","quality_controlled":"1","date_published":"2019-07-15T00:00:00Z","doi":"10.1364/NLO.2019.NM2A.5","abstract":[{"lang":"eng","text":"We demonstrate electro-optic frequency comb generation using a doubly resonant system comprising a whispering gallery mode disk resonator made of lithium niobate mounted inside a three dimensional copper cavity. We observe 180 sidebands centred at 1550 nm."}],"day":"15","type":"conference","citation":{"ista":"Rueda Sanchez AR, Sedlmeir F, Leuchs G, Kumari M, Schwefel HGL. 2019. Resonant electro-optic frequency comb generation in lithium niobate disk resonator inside a microwave cavity. Nonlinear Optics, OSA Technical Digest. NLO: Nonlinear Optics, NM2A.5.","chicago":"Rueda Sanchez, Alfredo R, Florian Sedlmeir, Gerd Leuchs, Madhuri Kumari, and Harald G.L. Schwefel. “Resonant Electro-Optic Frequency Comb Generation in Lithium Niobate Disk Resonator inside a Microwave Cavity.” In <i>Nonlinear Optics, OSA Technical Digest</i>. Optica Publishing Group, 2019. <a href=\"https://doi.org/10.1364/NLO.2019.NM2A.5\">https://doi.org/10.1364/NLO.2019.NM2A.5</a>.","mla":"Rueda Sanchez, Alfredo R., et al. “Resonant Electro-Optic Frequency Comb Generation in Lithium Niobate Disk Resonator inside a Microwave Cavity.” <i>Nonlinear Optics, OSA Technical Digest</i>, NM2A.5, Optica Publishing Group, 2019, doi:<a href=\"https://doi.org/10.1364/NLO.2019.NM2A.5\">10.1364/NLO.2019.NM2A.5</a>.","ieee":"A. R. Rueda Sanchez, F. Sedlmeir, G. Leuchs, M. Kumari, and H. G. L. Schwefel, “Resonant electro-optic frequency comb generation in lithium niobate disk resonator inside a microwave cavity,” in <i>Nonlinear Optics, OSA Technical Digest</i>, Waikoloa Beach, Hawaii (HI), United States, 2019.","ama":"Rueda Sanchez AR, Sedlmeir F, Leuchs G, Kumari M, Schwefel HGL. Resonant electro-optic frequency comb generation in lithium niobate disk resonator inside a microwave cavity. In: <i>Nonlinear Optics, OSA Technical Digest</i>. Optica Publishing Group; 2019. doi:<a href=\"https://doi.org/10.1364/NLO.2019.NM2A.5\">10.1364/NLO.2019.NM2A.5</a>","apa":"Rueda Sanchez, A. R., Sedlmeir, F., Leuchs, G., Kumari, M., &#38; Schwefel, H. G. L. (2019). Resonant electro-optic frequency comb generation in lithium niobate disk resonator inside a microwave cavity. In <i>Nonlinear Optics, OSA Technical Digest</i>. Waikoloa Beach, Hawaii (HI), United States: Optica Publishing Group. <a href=\"https://doi.org/10.1364/NLO.2019.NM2A.5\">https://doi.org/10.1364/NLO.2019.NM2A.5</a>","short":"A.R. Rueda Sanchez, F. Sedlmeir, G. Leuchs, M. Kumari, H.G.L. Schwefel, in:, Nonlinear Optics, OSA Technical Digest, Optica Publishing Group, 2019."},"year":"2019","publication_identifier":{"isbn":["9781557528209"]},"article_number":"NM2A.5","_id":"7233","date_updated":"2025-05-14T11:09:22Z","title":"Resonant electro-optic frequency comb generation in lithium niobate disk resonator inside a microwave cavity","author":[{"first_name":"Alfredo R","orcid":"0000-0001-6249-5860","id":"3B82B0F8-F248-11E8-B48F-1D18A9856A87","last_name":"Rueda Sanchez","full_name":"Rueda Sanchez, Alfredo R"},{"first_name":"Florian","last_name":"Sedlmeir","full_name":"Sedlmeir, Florian"},{"full_name":"Leuchs, Gerd","last_name":"Leuchs","first_name":"Gerd"},{"last_name":"Kumari","full_name":"Kumari, Madhuri","first_name":"Madhuri"},{"first_name":"Harald G.L.","last_name":"Schwefel","full_name":"Schwefel, Harald G.L."}],"scopus_import":"1","article_processing_charge":"No","month":"07","status":"public","language":[{"iso":"eng"}],"date_created":"2020-01-05T23:00:48Z","oa_version":"None","publication_status":"published","conference":{"end_date":"2019-07-19","location":"Waikoloa Beach, Hawaii (HI), United States","name":"NLO: Nonlinear Optics","start_date":"2019-07-15"}},{"quality_controlled":"1","type":"journal_article","abstract":[{"lang":"eng","text":"The study of parallel ecological divergence provides important clues to the operation of natural selection. Parallel divergence often occurs in heterogeneous environments with different kinds of environmental gradients in different locations, but the genomic basis underlying this process is unknown. We investigated the genomics of rapid parallel adaptation in the marine snail Littorina saxatilis in response to two independent environmental axes (crab-predation versus wave-action and low-shore versus high-shore). Using pooled whole-genome resequencing, we show that sharing of genomic regions of high differentiation between environments is generally low but increases at smaller spatial scales. We identify different shared genomic regions of divergence for each environmental axis and show that most of these regions overlap with candidate chromosomal inversions. Several inversion regions are divergent and polymorphic across many localities. We argue that chromosomal inversions could store shared variation that fuels rapid parallel adaptation to heterogeneous environments, possibly as balanced polymorphism shared by adaptive gene flow."}],"pmid":1,"citation":{"mla":"Morales, Hernán E., et al. “Genomic Architecture of Parallel Ecological Divergence: Beyond a Single Environmental Contrast.” <i>Science Advances</i>, vol. 5, no. 12, eaav9963, AAAS, 2019, doi:<a href=\"https://doi.org/10.1126/sciadv.aav9963\">10.1126/sciadv.aav9963</a>.","chicago":"Morales, Hernán E., Rui Faria, Kerstin Johannesson, Tomas Larsson, Marina Panova, Anja M Westram, and Roger K. Butlin. “Genomic Architecture of Parallel Ecological Divergence: Beyond a Single Environmental Contrast.” <i>Science Advances</i>. AAAS, 2019. <a href=\"https://doi.org/10.1126/sciadv.aav9963\">https://doi.org/10.1126/sciadv.aav9963</a>.","ista":"Morales HE, Faria R, Johannesson K, Larsson T, Panova M, Westram AM, Butlin RK. 2019. Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast. Science Advances. 5(12), eaav9963.","ieee":"H. E. Morales <i>et al.</i>, “Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast,” <i>Science Advances</i>, vol. 5, no. 12. AAAS, 2019.","ama":"Morales HE, Faria R, Johannesson K, et al. Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast. <i>Science Advances</i>. 2019;5(12). doi:<a href=\"https://doi.org/10.1126/sciadv.aav9963\">10.1126/sciadv.aav9963</a>","apa":"Morales, H. E., Faria, R., Johannesson, K., Larsson, T., Panova, M., Westram, A. M., &#38; Butlin, R. K. (2019). Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast. <i>Science Advances</i>. AAAS. <a href=\"https://doi.org/10.1126/sciadv.aav9963\">https://doi.org/10.1126/sciadv.aav9963</a>","short":"H.E. Morales, R. Faria, K. Johannesson, T. Larsson, M. Panova, A.M. Westram, R.K. Butlin, Science Advances 5 (2019)."},"publisher":"AAAS","department":[{"_id":"NiBa"}],"volume":5,"external_id":{"isi":["000505069600008"],"pmid":["31840052"]},"date_created":"2020-01-29T15:58:27Z","publication_status":"published","tmp":{"short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"issue":"12","scopus_import":"1","month":"12","_id":"7393","ec_funded":1,"article_type":"original","publication_identifier":{"issn":["2375-2548"]},"year":"2019","article_number":"eaav9963","intvolume":"         5","date_published":"2019-12-04T00:00:00Z","day":"04","doi":"10.1126/sciadv.aav9963","oa":1,"file":[{"content_type":"application/pdf","checksum":"af99a5dcdc66c6d6102051faf3be48d8","relation":"main_file","date_updated":"2020-07-14T12:47:57Z","file_id":"7442","access_level":"open_access","creator":"dernst","file_size":1869449,"file_name":"2019_ScienceAdvances_Morales.pdf","date_created":"2020-02-03T13:33:25Z"}],"ddc":["570"],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"},{"name":"Theoretical and empirical approaches to understanding Parallel Adaptation","_id":"265B41B8-B435-11E9-9278-68D0E5697425","grant_number":"797747","call_identifier":"H2020"}],"publication":"Science Advances","isi":1,"oa_version":"Published Version","file_date_updated":"2020-07-14T12:47:57Z","has_accepted_license":"1","article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"date_updated":"2025-04-14T07:44:02Z","title":"Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast","author":[{"last_name":"Morales","full_name":"Morales, Hernán E.","first_name":"Hernán E."},{"first_name":"Rui","full_name":"Faria, Rui","last_name":"Faria"},{"last_name":"Johannesson","full_name":"Johannesson, Kerstin","first_name":"Kerstin"},{"first_name":"Tomas","full_name":"Larsson, Tomas","last_name":"Larsson"},{"first_name":"Marina","last_name":"Panova","full_name":"Panova, Marina"},{"orcid":"0000-0003-1050-4969","full_name":"Westram, Anja M","last_name":"Westram","id":"3C147470-F248-11E8-B48F-1D18A9856A87","first_name":"Anja M"},{"last_name":"Butlin","full_name":"Butlin, Roger K.","first_name":"Roger K."}]},{"year":"2019","publication_identifier":{"issn":["1369-5266"]},"article_type":"letter_note","intvolume":"        52","date_published":"2019-12-01T00:00:00Z","doi":"10.1016/j.pbi.2019.11.002","day":"01","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication":"Current Opinion in Plant Biology","isi":1,"oa_version":"None","article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","page":"A1-A2","date_updated":"2023-09-07T14:56:55Z","author":[{"first_name":"Eva","orcid":"0000-0002-8510-9739","last_name":"Benková","full_name":"Benková, Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Yasin","full_name":"Dagdas, Yasin","last_name":"Dagdas"}],"title":"Editorial overview: Cell biology in the era of omics?","quality_controlled":"1","pmid":1,"type":"journal_article","citation":{"apa":"Benková, E., &#38; Dagdas, Y. (2019). Editorial overview: Cell biology in the era of omics? <i>Current Opinion in Plant Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.pbi.2019.11.002\">https://doi.org/10.1016/j.pbi.2019.11.002</a>","ieee":"E. Benková and Y. Dagdas, “Editorial overview: Cell biology in the era of omics?,” <i>Current Opinion in Plant Biology</i>, vol. 52, no. 12. Elsevier, pp. A1–A2, 2019.","ama":"Benková E, Dagdas Y. Editorial overview: Cell biology in the era of omics? <i>Current Opinion in Plant Biology</i>. 2019;52(12):A1-A2. doi:<a href=\"https://doi.org/10.1016/j.pbi.2019.11.002\">10.1016/j.pbi.2019.11.002</a>","mla":"Benková, Eva, and Yasin Dagdas. “Editorial Overview: Cell Biology in the Era of Omics?” <i>Current Opinion in Plant Biology</i>, vol. 52, no. 12, Elsevier, 2019, pp. A1–2, doi:<a href=\"https://doi.org/10.1016/j.pbi.2019.11.002\">10.1016/j.pbi.2019.11.002</a>.","chicago":"Benková, Eva, and Yasin Dagdas. “Editorial Overview: Cell Biology in the Era of Omics?” <i>Current Opinion in Plant Biology</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.pbi.2019.11.002\">https://doi.org/10.1016/j.pbi.2019.11.002</a>.","ista":"Benková E, Dagdas Y. 2019. Editorial overview: Cell biology in the era of omics? Current Opinion in Plant Biology. 52(12), A1–A2.","short":"E. Benková, Y. Dagdas, Current Opinion in Plant Biology 52 (2019) A1–A2."},"publisher":"Elsevier","department":[{"_id":"EvBe"}],"volume":52,"external_id":{"pmid":["31787165"],"isi":["000502890600001"]},"date_created":"2020-01-29T16:00:07Z","publication_status":"published","scopus_import":"1","issue":"12","month":"12","_id":"7394"},{"status":"public","language":[{"iso":"eng"}],"has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2020-07-14T12:47:57Z","author":[{"first_name":"James A","orcid":"0000-0002-9864-3586","full_name":"Letts, James A","last_name":"Letts","id":"322DA418-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Karol","last_name":"Fiedorczuk","full_name":"Fiedorczuk, Karol","id":"5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0"},{"first_name":"Gianluca","last_name":"Degliesposti","full_name":"Degliesposti, Gianluca"},{"first_name":"Mark","last_name":"Skehel","full_name":"Skehel, Mark"},{"id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","full_name":"Sazanov, Leonid A","orcid":"0000-0002-0977-7989","first_name":"Leonid A"}],"title":"Structures of respiratory supercomplex I+III2 reveal functional and conformational crosstalk","page":"1131-1146.e6","date_updated":"2024-10-22T09:34:12Z","oa_version":"Published Version","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"call_identifier":"H2020","_id":"2590DB08-B435-11E9-9278-68D0E5697425","name":"Atomic Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes","grant_number":"701309"}],"ddc":["570"],"isi":1,"publication":"Molecular Cell","article_type":"original","year":"2019","publication_identifier":{"issn":["1097-2765"]},"ec_funded":1,"file":[{"checksum":"5202f53a237d6650ece038fbf13bdcea","content_type":"application/pdf","relation":"main_file","date_updated":"2020-07-14T12:47:57Z","file_id":"7447","access_level":"open_access","creator":"dernst","file_size":9654895,"file_name":"2019_MolecularCell_Letts.pdf","date_created":"2020-02-04T10:37:28Z"}],"oa":1,"doi":"10.1016/j.molcel.2019.07.022","day":"19","date_published":"2019-09-19T00:00:00Z","intvolume":"        75","month":"09","scopus_import":"1","issue":"6","_id":"7395","external_id":{"isi":["000486614200006"],"pmid":["31492636"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","date_created":"2020-01-29T16:02:33Z","publisher":"Cell Press","corr_author":"1","volume":75,"department":[{"_id":"LeSa"}],"citation":{"short":"J.A. Letts, K. Fiedorczuk, G. Degliesposti, M. Skehel, L.A. Sazanov, Molecular Cell 75 (2019) 1131–1146.e6.","ama":"Letts JA, Fiedorczuk K, Degliesposti G, Skehel M, Sazanov LA. Structures of respiratory supercomplex I+III2 reveal functional and conformational crosstalk. <i>Molecular Cell</i>. 2019;75(6):1131-1146.e6. doi:<a href=\"https://doi.org/10.1016/j.molcel.2019.07.022\">10.1016/j.molcel.2019.07.022</a>","ieee":"J. A. Letts, K. Fiedorczuk, G. Degliesposti, M. Skehel, and L. A. Sazanov, “Structures of respiratory supercomplex I+III2 reveal functional and conformational crosstalk,” <i>Molecular Cell</i>, vol. 75, no. 6. Cell Press, p. 1131–1146.e6, 2019.","apa":"Letts, J. A., Fiedorczuk, K., Degliesposti, G., Skehel, M., &#38; Sazanov, L. A. (2019). Structures of respiratory supercomplex I+III2 reveal functional and conformational crosstalk. <i>Molecular Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.molcel.2019.07.022\">https://doi.org/10.1016/j.molcel.2019.07.022</a>","ista":"Letts JA, Fiedorczuk K, Degliesposti G, Skehel M, Sazanov LA. 2019. Structures of respiratory supercomplex I+III2 reveal functional and conformational crosstalk. Molecular Cell. 75(6), 1131–1146.e6.","chicago":"Letts, James A, Karol Fiedorczuk, Gianluca Degliesposti, Mark Skehel, and Leonid A Sazanov. “Structures of Respiratory Supercomplex I+III2 Reveal Functional and Conformational Crosstalk.” <i>Molecular Cell</i>. Cell Press, 2019. <a href=\"https://doi.org/10.1016/j.molcel.2019.07.022\">https://doi.org/10.1016/j.molcel.2019.07.022</a>.","mla":"Letts, James A., et al. “Structures of Respiratory Supercomplex I+III2 Reveal Functional and Conformational Crosstalk.” <i>Molecular Cell</i>, vol. 75, no. 6, Cell Press, 2019, p. 1131–1146.e6, doi:<a href=\"https://doi.org/10.1016/j.molcel.2019.07.022\">10.1016/j.molcel.2019.07.022</a>."},"abstract":[{"text":"The mitochondrial electron transport chain complexes are organized into supercomplexes (SCs) of defined stoichiometry, which have been proposed to regulate electron flux via substrate channeling. We demonstrate that CoQ trapping in the isolated SC I+III2 limits complex (C)I turnover, arguing against channeling. The SC structure, resolved at up to 3.8 Å in four distinct states, suggests that CoQ oxidation may be rate limiting because of unequal access of CoQ to the active sites of CIII2. CI shows a transition between “closed” and “open” conformations, accompanied by the striking rotation of a key transmembrane helix. Furthermore, the state of CI affects the conformational flexibility within CIII2, demonstrating crosstalk between the enzymes. CoQ was identified at only three of the four binding sites in CIII2, suggesting that interaction with CI disrupts CIII2 symmetry in a functionally relevant manner. Together, these observations indicate a more nuanced functional role for the SCs.","lang":"eng"}],"type":"journal_article","pmid":1,"quality_controlled":"1"},{"_id":"7396","month":"09","issue":"3","scopus_import":"1","publication_status":"published","date_created":"2020-01-29T16:04:19Z","external_id":{"isi":["000486661700001"],"arxiv":["1810.11338"]},"volume":91,"department":[{"_id":"MiLe"}],"publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1810.11338"}],"citation":{"ista":"Koch CP, Lemeshko M, Sugny D. 2019. Quantum control of molecular rotation. Reviews of Modern Physics. 91(3), 035005.","chicago":"Koch, Christiane P., Mikhail Lemeshko, and Dominique Sugny. “Quantum Control of Molecular Rotation.” <i>Reviews of Modern Physics</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/revmodphys.91.035005\">https://doi.org/10.1103/revmodphys.91.035005</a>.","mla":"Koch, Christiane P., et al. “Quantum Control of Molecular Rotation.” <i>Reviews of Modern Physics</i>, vol. 91, no. 3, 035005, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/revmodphys.91.035005\">10.1103/revmodphys.91.035005</a>.","ama":"Koch CP, Lemeshko M, Sugny D. Quantum control of molecular rotation. <i>Reviews of Modern Physics</i>. 2019;91(3). doi:<a href=\"https://doi.org/10.1103/revmodphys.91.035005\">10.1103/revmodphys.91.035005</a>","apa":"Koch, C. P., Lemeshko, M., &#38; Sugny, D. (2019). Quantum control of molecular rotation. <i>Reviews of Modern Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/revmodphys.91.035005\">https://doi.org/10.1103/revmodphys.91.035005</a>","ieee":"C. P. Koch, M. Lemeshko, and D. Sugny, “Quantum control of molecular rotation,” <i>Reviews of Modern Physics</i>, vol. 91, no. 3. American Physical Society, 2019.","short":"C.P. Koch, M. Lemeshko, D. Sugny, Reviews of Modern Physics 91 (2019)."},"abstract":[{"lang":"eng","text":"The angular momentum of molecules, or, equivalently, their rotation in three-dimensional space, is ideally suited for quantum control. Molecular angular momentum is naturally quantized, time evolution is governed by a well-known Hamiltonian with only a few accurately known parameters, and transitions between rotational levels can be driven by external fields from various parts of the electromagnetic spectrum. Control over the rotational motion can be exerted in one-, two-, and many-body scenarios, thereby allowing one to probe Anderson localization, target stereoselectivity of bimolecular reactions, or encode quantum information to name just a few examples. The corresponding approaches to quantum control are pursued within separate, and typically disjoint, subfields of physics, including ultrafast science, cold collisions, ultracold gases, quantum information science, and condensed-matter physics. It is the purpose of this review to present the various control phenomena, which all rely on the same underlying physics, within a unified framework. To this end, recall the Hamiltonian for free rotations, assuming the rigid rotor approximation to be valid, and summarize the different ways for a rotor to interact with external electromagnetic fields. These interactions can be exploited for control—from achieving alignment, orientation, or laser cooling in a one-body framework, steering bimolecular collisions, or realizing a quantum computer or quantum simulator in the many-body setting."}],"type":"journal_article","quality_controlled":"1","author":[{"first_name":"Christiane P.","last_name":"Koch","full_name":"Koch, Christiane P."},{"first_name":"Mikhail","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Sugny","full_name":"Sugny, Dominique","first_name":"Dominique"}],"title":"Quantum control of molecular rotation","date_updated":"2025-04-15T07:59:29Z","language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","oa_version":"Preprint","isi":1,"publication":"Reviews of Modern Physics","arxiv":1,"project":[{"_id":"26031614-B435-11E9-9278-68D0E5697425","name":"Quantum rotations in the presence of a many-body environment","grant_number":"P29902","call_identifier":"FWF"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"doi":"10.1103/revmodphys.91.035005","day":"18","date_published":"2019-09-18T00:00:00Z","intvolume":"        91","article_number":"035005 ","article_type":"original","publication_identifier":{"eissn":["1539-0756"],"issn":["0034-6861"]},"year":"2019"},{"citation":{"short":"J.M. Lopez Alonso, G.H. Choueiri, B. Hof, Journal of Fluid Mechanics 874 (2019) 699–719.","mla":"Lopez Alonso, Jose M., et al. “Dynamics of Viscoelastic Pipe Flow at Low Reynolds Numbers in the Maximum Drag Reduction Limit.” <i>Journal of Fluid Mechanics</i>, vol. 874, Cambridge University Press, 2019, pp. 699–719, doi:<a href=\"https://doi.org/10.1017/jfm.2019.486\">10.1017/jfm.2019.486</a>.","chicago":"Lopez Alonso, Jose M, George H Choueiri, and Björn Hof. “Dynamics of Viscoelastic Pipe Flow at Low Reynolds Numbers in the Maximum Drag Reduction Limit.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2019. <a href=\"https://doi.org/10.1017/jfm.2019.486\">https://doi.org/10.1017/jfm.2019.486</a>.","ista":"Lopez Alonso JM, Choueiri GH, Hof B. 2019. Dynamics of viscoelastic pipe flow at low Reynolds numbers in the maximum drag reduction limit. Journal of Fluid Mechanics. 874, 699–719.","ama":"Lopez Alonso JM, Choueiri GH, Hof B. Dynamics of viscoelastic pipe flow at low Reynolds numbers in the maximum drag reduction limit. <i>Journal of Fluid Mechanics</i>. 2019;874:699-719. doi:<a href=\"https://doi.org/10.1017/jfm.2019.486\">10.1017/jfm.2019.486</a>","apa":"Lopez Alonso, J. M., Choueiri, G. H., &#38; Hof, B. (2019). Dynamics of viscoelastic pipe flow at low Reynolds numbers in the maximum drag reduction limit. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2019.486\">https://doi.org/10.1017/jfm.2019.486</a>","ieee":"J. M. Lopez Alonso, G. H. Choueiri, and B. Hof, “Dynamics of viscoelastic pipe flow at low Reynolds numbers in the maximum drag reduction limit,” <i>Journal of Fluid Mechanics</i>, vol. 874. Cambridge University Press, pp. 699–719, 2019."},"type":"journal_article","abstract":[{"text":"Polymer additives can substantially reduce the drag of turbulent flows and the upperlimit, the so called “maximum drag reduction” (MDR) asymptote is universal, i.e. inde-pendent of the type of polymer and solvent used. Until recently, the consensus was that,in this limit, flows are in a marginal state where only a minimal level of turbulence activ-ity persists. Observations in direct numerical simulations using minimal sized channelsappeared  to  support  this  view  and  reported  long  “hibernation”  periods  where  turbu-lence is marginalized. In simulations of pipe flow we find that, indeed, with increasingWeissenberg number (Wi), turbulence expresses long periods of hibernation if the domainsize is small. However, with increasing pipe length, the temporal hibernation continuouslyalters to spatio-temporal intermittency and here the flow consists of turbulent puffs sur-rounded by laminar flow. Moreover, upon an increase in Wi, the flow fully relaminarises,in agreement with recent experiments. At even larger Wi, a different instability is en-countered causing a drag increase towards MDR. Our findings hence link earlier minimalflow unit simulations with recent experiments and confirm that the addition of polymersinitially suppresses Newtonian turbulence and leads to a reverse transition. The MDRstate on the other hand results from a separate instability and the underlying dynamicscorresponds to the recently proposed state of elasto-inertial-turbulence (EIT).","lang":"eng"}],"quality_controlled":"1","volume":874,"department":[{"_id":"BjHo"}],"publisher":"Cambridge University Press","main_file_link":[{"url":"https://arxiv.org/abs/1808.04080","open_access":"1"}],"publication_status":"published","date_created":"2020-01-29T16:05:19Z","external_id":{"isi":["000475349900001"],"arxiv":["1808.04080"]},"_id":"7397","month":"09","scopus_import":"1","oa":1,"day":"10","doi":"10.1017/jfm.2019.486","date_published":"2019-09-10T00:00:00Z","intvolume":"       874","year":"2019","publication_identifier":{"eissn":["1469-7645"],"issn":["0022-1120"]},"article_type":"original","isi":1,"publication":"Journal of Fluid Mechanics","arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","title":"Dynamics of viscoelastic pipe flow at low Reynolds numbers in the maximum drag reduction limit","author":[{"full_name":"Lopez Alonso, Jose M","last_name":"Lopez Alonso","id":"40770848-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0384-2022","first_name":"Jose M"},{"first_name":"George H","last_name":"Choueiri","full_name":"Choueiri, George H","id":"448BD5BC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Björn","orcid":"0000-0003-2057-2754","id":"3A374330-F248-11E8-B48F-1D18A9856A87","full_name":"Hof, Björn","last_name":"Hof"}],"page":"699-719","date_updated":"2025-05-14T11:21:59Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No"},{"intvolume":"       151","date_published":"2019-07-03T00:00:00Z","doi":"10.1085/jgp.201912318","day":"03","file":[{"file_size":2641297,"creator":"dernst","date_created":"2020-02-05T07:20:32Z","file_name":"2019_JGP_Erdem.pdf","access_level":"open_access","file_id":"7450","date_updated":"2020-07-14T12:47:57Z","relation":"main_file","checksum":"5706b4ccd74ee3e50bf7ecb2a203df71","content_type":"application/pdf"}],"oa":1,"publication_identifier":{"eissn":["1540-7748"],"issn":["0022-1295"]},"article_type":"original","year":"2019","publication":"The Journal of General Physiology","isi":1,"ddc":["570"],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Published Version","page":"1035-1050","date_updated":"2023-09-07T14:52:23Z","author":[{"full_name":"Erdem, Fatma Asli","last_name":"Erdem","first_name":"Fatma Asli"},{"full_name":"Ilic, Marija","last_name":"Ilic","first_name":"Marija"},{"orcid":"0000-0002-3509-1948","full_name":"Koppensteiner, Peter","last_name":"Koppensteiner","id":"3B8B25A8-F248-11E8-B48F-1D18A9856A87","first_name":"Peter"},{"first_name":"Jakub","last_name":"Gołacki","full_name":"Gołacki, Jakub"},{"first_name":"Gert","full_name":"Lubec, Gert","last_name":"Lubec"},{"first_name":"Michael","full_name":"Freissmuth, Michael","last_name":"Freissmuth"},{"first_name":"Walter","full_name":"Sandtner, Walter","last_name":"Sandtner"}],"title":"A comparison of the transport kinetics of glycine transporter 1 and glycine transporter 2","file_date_updated":"2020-07-14T12:47:57Z","has_accepted_license":"1","article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","abstract":[{"text":"Transporters of the solute carrier 6 (SLC6) family translocate their cognate substrate together with Na+ and Cl−. Detailed kinetic models exist for the transporters of GABA (GAT1/SLC6A1) and the monoamines dopamine (DAT/SLC6A3) and serotonin (SERT/SLC6A4). Here, we posited that the transport cycle of individual SLC6 transporters reflects the physiological requirements they operate under. We tested this hypothesis by analyzing the transport cycle of glycine transporter 1 (GlyT1/SLC6A9) and glycine transporter 2 (GlyT2/SLC6A5). GlyT2 is the only SLC6 family member known to translocate glycine, Na+, and Cl− in a 1:3:1 stoichiometry. We analyzed partial reactions in real time by electrophysiological recordings. Contrary to monoamine transporters, both GlyTs were found to have a high transport capacity driven by rapid return of the empty transporter after release of Cl− on the intracellular side. Rapid cycling of both GlyTs was further supported by highly cooperative binding of cosubstrate ions and substrate such that their forward transport mode was maintained even under conditions of elevated intracellular Na+ or Cl−. The most important differences in the transport cycle of GlyT1 and GlyT2 arose from the kinetics of charge movement and the resulting voltage-dependent rate-limiting reactions: the kinetics of GlyT1 were governed by transition of the substrate-bound transporter from outward- to inward-facing conformations, whereas the kinetics of GlyT2 were governed by Na+ binding (or a related conformational change). Kinetic modeling showed that the kinetics of GlyT1 are ideally suited for supplying the extracellular glycine levels required for NMDA receptor activation.","lang":"eng"}],"pmid":1,"citation":{"short":"F.A. Erdem, M. Ilic, P. Koppensteiner, J. Gołacki, G. Lubec, M. Freissmuth, W. Sandtner, The Journal of General Physiology 151 (2019) 1035–1050.","apa":"Erdem, F. A., Ilic, M., Koppensteiner, P., Gołacki, J., Lubec, G., Freissmuth, M., &#38; Sandtner, W. (2019). A comparison of the transport kinetics of glycine transporter 1 and glycine transporter 2. <i>The Journal of General Physiology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1085/jgp.201912318\">https://doi.org/10.1085/jgp.201912318</a>","ieee":"F. A. Erdem <i>et al.</i>, “A comparison of the transport kinetics of glycine transporter 1 and glycine transporter 2,” <i>The Journal of General Physiology</i>, vol. 151, no. 8. Rockefeller University Press, pp. 1035–1050, 2019.","ama":"Erdem FA, Ilic M, Koppensteiner P, et al. A comparison of the transport kinetics of glycine transporter 1 and glycine transporter 2. <i>The Journal of General Physiology</i>. 2019;151(8):1035-1050. doi:<a href=\"https://doi.org/10.1085/jgp.201912318\">10.1085/jgp.201912318</a>","ista":"Erdem FA, Ilic M, Koppensteiner P, Gołacki J, Lubec G, Freissmuth M, Sandtner W. 2019. A comparison of the transport kinetics of glycine transporter 1 and glycine transporter 2. The Journal of General Physiology. 151(8), 1035–1050.","chicago":"Erdem, Fatma Asli, Marija Ilic, Peter Koppensteiner, Jakub Gołacki, Gert Lubec, Michael Freissmuth, and Walter Sandtner. “A Comparison of the Transport Kinetics of Glycine Transporter 1 and Glycine Transporter 2.” <i>The Journal of General Physiology</i>. Rockefeller University Press, 2019. <a href=\"https://doi.org/10.1085/jgp.201912318\">https://doi.org/10.1085/jgp.201912318</a>.","mla":"Erdem, Fatma Asli, et al. “A Comparison of the Transport Kinetics of Glycine Transporter 1 and Glycine Transporter 2.” <i>The Journal of General Physiology</i>, vol. 151, no. 8, Rockefeller University Press, 2019, pp. 1035–50, doi:<a href=\"https://doi.org/10.1085/jgp.201912318\">10.1085/jgp.201912318</a>."},"department":[{"_id":"RySh"}],"volume":151,"publisher":"Rockefeller University Press","date_created":"2020-01-29T16:06:29Z","publication_status":"published","tmp":{"image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode"},"external_id":{"pmid":["31270129"],"isi":["000478792500008"]},"_id":"7398","issue":"8","scopus_import":"1","month":"07"}]