[{"abstract":[{"lang":"eng","text":"A central goal in theoretical neuroscience is to predict the response properties of sensory neurons from first principles. To this end, “efficient coding” posits that sensory neurons encode maximal information about their inputs given internal constraints. There exist, however, many variants of efficient coding (e.g., redundancy reduction, different formulations of predictive coding, robust coding, sparse coding, etc.), differing in their regimes of applicability, in the relevance of signals to be encoded, and in the choice of constraints. It is unclear how these types of efficient coding relate or what is expected when different coding objectives are combined. Here we present a unified framework that encompasses previously proposed efficient coding models and extends to unique regimes. We show that optimizing neural responses to encode predictive information can lead them to either correlate or decorrelate their inputs, depending on the stimulus statistics; in contrast, at low noise, efficiently encoding the past always predicts decorrelation. Later, we investigate coding of naturalistic movies and show that qualitatively different types of visual motion tuning and levels of response sparsity are predicted, depending on whether the objective is to recover the past or predict the future. Our approach promises a way to explain the observed diversity of sensory neural responses, as due to multiple functional goals and constraints fulfilled by different cell types and/or circuits."}],"citation":{"mla":"Chalk, Matthew J., et al. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 115, no. 1, National Academy of Sciences, 2018, pp. 186–91, doi:<a href=\"https://doi.org/10.1073/pnas.1711114115\">10.1073/pnas.1711114115</a>.","apa":"Chalk, M. J., Marre, O., &#38; Tkačik, G. (2018). Toward a unified theory of efficient, predictive, and sparse coding. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1711114115\">https://doi.org/10.1073/pnas.1711114115</a>","ieee":"M. J. Chalk, O. Marre, and G. Tkačik, “Toward a unified theory of efficient, predictive, and sparse coding,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 115, no. 1. National Academy of Sciences, pp. 186–191, 2018.","ista":"Chalk MJ, Marre O, Tkačik G. 2018. Toward a unified theory of efficient, predictive, and sparse coding. Proceedings of the National Academy of Sciences of the United States of America. 115(1), 186–191.","chicago":"Chalk, Matthew J, Olivier Marre, and Gašper Tkačik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1711114115\">https://doi.org/10.1073/pnas.1711114115</a>.","ama":"Chalk MJ, Marre O, Tkačik G. Toward a unified theory of efficient, predictive, and sparse coding. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2018;115(1):186-191. doi:<a href=\"https://doi.org/10.1073/pnas.1711114115\">10.1073/pnas.1711114115</a>","short":"M.J. Chalk, O. Marre, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 115 (2018) 186–191."},"doi":"10.1073/pnas.1711114115","scopus_import":"1","intvolume":"       115","type":"journal_article","publisher":"National Academy of Sciences","corr_author":"1","publication_status":"published","volume":115,"language":[{"iso":"eng"}],"year":"2018","quality_controlled":"1","issue":"1","page":"186 - 191","month":"01","isi":1,"article_processing_charge":"No","external_id":{"isi":["000419128700049"]},"oa":1,"date_published":"2018-01-02T00:00:00Z","publist_id":"7273","publication":"Proceedings of the National Academy of Sciences of the United States of America","project":[{"_id":"254D1A94-B435-11E9-9278-68D0E5697425","grant_number":"P 25651-N26","name":"Sensitivity to higher-order statistics in natural scenes","call_identifier":"FWF"}],"_id":"543","oa_version":"Submitted Version","date_created":"2018-12-11T11:47:04Z","date_updated":"2025-05-14T10:55:59Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"GaTk"}],"day":"02","author":[{"id":"2BAAC544-F248-11E8-B48F-1D18A9856A87","last_name":"Chalk","first_name":"Matthew J","orcid":"0000-0001-7782-4436","full_name":"Chalk, Matthew J"},{"full_name":"Marre, Olivier","last_name":"Marre","first_name":"Olivier"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik","first_name":"Gasper","orcid":"0000-0002-6699-1455","full_name":"Tkacik, Gasper"}],"main_file_link":[{"url":"https://doi.org/10.1101/152660 ","open_access":"1"}],"title":"Toward a unified theory of efficient, predictive, and sparse coding"},{"external_id":{"isi":["000427101600018"]},"date_published":"2018-02-01T00:00:00Z","publication":"Current Opinion in Neurobiology","publist_id":"7268","date_created":"2018-12-11T11:47:06Z","oa_version":"None","_id":"546","status":"public","date_updated":"2024-10-09T20:58:31Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","day":"01","department":[{"_id":"GaNo"}],"title":"Neural stem cells in neuropsychiatric disorders","author":[{"last_name":"Sacco","first_name":"Roberto","full_name":"Sacco, Roberto","id":"42C9F57E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cacci, Emanuele","last_name":"Cacci","first_name":"Emanuele"},{"orcid":"0000-0002-7673-7178","full_name":"Novarino, Gaia","last_name":"Novarino","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87"}],"citation":{"short":"R. Sacco, E. Cacci, G. Novarino, Current Opinion in Neurobiology 48 (2018) 131–138.","ama":"Sacco R, Cacci E, Novarino G. Neural stem cells in neuropsychiatric disorders. <i>Current Opinion in Neurobiology</i>. 2018;48(2):131-138. doi:<a href=\"https://doi.org/10.1016/j.conb.2017.12.005\">10.1016/j.conb.2017.12.005</a>","chicago":"Sacco, Roberto, Emanuele Cacci, and Gaia Novarino. “Neural Stem Cells in Neuropsychiatric Disorders.” <i>Current Opinion in Neurobiology</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.conb.2017.12.005\">https://doi.org/10.1016/j.conb.2017.12.005</a>.","ieee":"R. Sacco, E. Cacci, and G. Novarino, “Neural stem cells in neuropsychiatric disorders,” <i>Current Opinion in Neurobiology</i>, vol. 48, no. 2. Elsevier, pp. 131–138, 2018.","ista":"Sacco R, Cacci E, Novarino G. 2018. Neural stem cells in neuropsychiatric disorders. Current Opinion in Neurobiology. 48(2), 131–138.","mla":"Sacco, Roberto, et al. “Neural Stem Cells in Neuropsychiatric Disorders.” <i>Current Opinion in Neurobiology</i>, vol. 48, no. 2, Elsevier, 2018, pp. 131–38, doi:<a href=\"https://doi.org/10.1016/j.conb.2017.12.005\">10.1016/j.conb.2017.12.005</a>.","apa":"Sacco, R., Cacci, E., &#38; Novarino, G. (2018). Neural stem cells in neuropsychiatric disorders. <i>Current Opinion in Neurobiology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.conb.2017.12.005\">https://doi.org/10.1016/j.conb.2017.12.005</a>"},"abstract":[{"lang":"eng","text":"The precise control of neural stem cell (NSC) proliferation and differentiation is crucial for the development and function of the human brain. Here, we review the emerging links between the alteration of embryonic and adult neurogenesis and the etiology of neuropsychiatric disorders (NPDs) such as autism spectrum disorders (ASDs) and schizophrenia (SCZ), as well as the advances in stem cell-based modeling and the novel therapeutic targets derived from these studies."}],"scopus_import":"1","doi":"10.1016/j.conb.2017.12.005","intvolume":"        48","publication_status":"published","type":"journal_article","corr_author":"1","publisher":"Elsevier","language":[{"iso":"eng"}],"volume":48,"quality_controlled":"1","year":"2018","month":"02","page":"131 - 138","issue":"2","article_processing_charge":"No","isi":1},{"publist_id":"7999","publication":"Current Biology","_id":"55","oa_version":"Published Version","date_created":"2018-12-11T11:44:23Z","external_id":{"isi":["000446693400008"]},"oa":1,"date_published":"2018-10-08T00:00:00Z","department":[{"_id":"SyCr"}],"day":"08","article_type":"original","author":[{"id":"3C7F4840-F248-11E8-B48F-1D18A9856A87","last_name":"Pull","first_name":"Christopher","orcid":"0000-0003-1122-3982","full_name":"Pull, Christopher"},{"last_name":"Metzler","first_name":"Sina","orcid":"0000-0002-9547-2494","full_name":"Metzler, Sina","id":"48204546-F248-11E8-B48F-1D18A9856A87"},{"id":"31757262-F248-11E8-B48F-1D18A9856A87","full_name":"Naderlinger, Elisabeth","first_name":"Elisabeth","last_name":"Naderlinger"},{"id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","last_name":"Cremer","first_name":"Sylvia","full_name":"Cremer, Sylvia","orcid":"0000-0002-2193-3868"}],"title":"Protection against the lethal side effects of social immunity in ants","main_file_link":[{"url":"https://doi.org/10.1016/j.cub.2018.08.063","open_access":"1"}],"date_updated":"2026-06-18T18:53:43Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"        28","publisher":"Cell Press","type":"journal_article","publication_status":"published","abstract":[{"text":"Many animals use antimicrobials to prevent or cure disease [1,2]. For example, some animals will ingest plants with medicinal properties, both prophylactically to prevent infection and therapeutically to self-medicate when sick. Antimicrobial substances are also used as topical disinfectants, to prevent infection, protect offspring and to sanitise their surroundings [1,2]. Social insects (ants, bees, wasps and termites) build nests in environments with a high abundance and diversity of pathogenic microorganisms — such as soil and rotting wood — and colonies are often densely crowded, creating conditions that favour disease outbreaks. Consequently, social insects have evolved collective disease defences to protect their colonies from epidemics. These traits can be seen as functionally analogous to the immune system of individual organisms [3,4]. This ‘social immunity’ utilises antimicrobials to prevent and eradicate infections, and to keep the brood and nest clean. However, these antimicrobial compounds can be harmful to the insects themselves, and it is unknown how colonies prevent collateral damage when using them. Here, we demonstrate that antimicrobial acids, produced by workers to disinfect the colony, are harmful to the delicate pupal brood stage, but that the pupae are protected from the acids by the presence of a silk cocoon. Garden ants spray their nests with an antimicrobial poison to sanitize contaminated nestmates and brood. Here, Pull et al show that they also prophylactically sanitise their colonies, and that the silk cocoon serves as a barrier to protect developing pupae, thus preventing collateral damage during nest sanitation.","lang":"eng"}],"citation":{"ama":"Pull C, Metzler S, Naderlinger E, Cremer S. Protection against the lethal side effects of social immunity in ants. <i>Current Biology</i>. 2018;28(19):R1139-R1140. doi:<a href=\"https://doi.org/10.1016/j.cub.2018.08.063\">10.1016/j.cub.2018.08.063</a>","short":"C. Pull, S. Metzler, E. Naderlinger, S. Cremer, Current Biology 28 (2018) R1139–R1140.","chicago":"Pull, Christopher, Sina Metzler, Elisabeth Naderlinger, and Sylvia Cremer. “Protection against the Lethal Side Effects of Social Immunity in Ants.” <i>Current Biology</i>. Cell Press, 2018. <a href=\"https://doi.org/10.1016/j.cub.2018.08.063\">https://doi.org/10.1016/j.cub.2018.08.063</a>.","ista":"Pull C, Metzler S, Naderlinger E, Cremer S. 2018. Protection against the lethal side effects of social immunity in ants. Current Biology. 28(19), R1139–R1140.","ieee":"C. Pull, S. Metzler, E. Naderlinger, and S. Cremer, “Protection against the lethal side effects of social immunity in ants,” <i>Current Biology</i>, vol. 28, no. 19. Cell Press, pp. R1139–R1140, 2018.","apa":"Pull, C., Metzler, S., Naderlinger, E., &#38; Cremer, S. (2018). Protection against the lethal side effects of social immunity in ants. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2018.08.063\">https://doi.org/10.1016/j.cub.2018.08.063</a>","mla":"Pull, Christopher, et al. “Protection against the Lethal Side Effects of Social Immunity in Ants.” <i>Current Biology</i>, vol. 28, no. 19, Cell Press, 2018, pp. R1139–40, doi:<a href=\"https://doi.org/10.1016/j.cub.2018.08.063\">10.1016/j.cub.2018.08.063</a>."},"doi":"10.1016/j.cub.2018.08.063","scopus_import":"1","page":"R1139 - R1140","issue":"19","month":"10","isi":1,"article_processing_charge":"No","volume":28,"language":[{"iso":"eng"}],"year":"2018","ddc":["570"],"quality_controlled":"1"},{"language":[{"iso":"eng"}],"volume":360,"quality_controlled":"1","year":"2018","month":"05","issue":"1","page":"347-403","article_processing_charge":"No","citation":{"mla":"Napiórkowski, Marcin M., et al. “The Bogoliubov Free Energy Functional II: The Dilute Limit.” <i>Communications in Mathematical Physics</i>, vol. 360, no. 1, Springer, 2018, pp. 347–403, doi:<a href=\"https://doi.org/10.1007/s00220-017-3064-x\">10.1007/s00220-017-3064-x</a>.","apa":"Napiórkowski, M. M., Reuvers, R., &#38; Solovej, J. (2018). The Bogoliubov free energy functional II: The dilute Limit. <i>Communications in Mathematical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s00220-017-3064-x\">https://doi.org/10.1007/s00220-017-3064-x</a>","ama":"Napiórkowski MM, Reuvers R, Solovej J. The Bogoliubov free energy functional II: The dilute Limit. <i>Communications in Mathematical Physics</i>. 2018;360(1):347-403. doi:<a href=\"https://doi.org/10.1007/s00220-017-3064-x\">10.1007/s00220-017-3064-x</a>","short":"M.M. Napiórkowski, R. Reuvers, J. Solovej, Communications in Mathematical Physics 360 (2018) 347–403.","ieee":"M. M. Napiórkowski, R. Reuvers, and J. Solovej, “The Bogoliubov free energy functional II: The dilute Limit,” <i>Communications in Mathematical Physics</i>, vol. 360, no. 1. Springer, pp. 347–403, 2018.","ista":"Napiórkowski MM, Reuvers R, Solovej J. 2018. The Bogoliubov free energy functional II: The dilute Limit. Communications in Mathematical Physics. 360(1), 347–403.","chicago":"Napiórkowski, Marcin M, Robin Reuvers, and Jan Solovej. “The Bogoliubov Free Energy Functional II: The Dilute Limit.” <i>Communications in Mathematical Physics</i>. Springer, 2018. <a href=\"https://doi.org/10.1007/s00220-017-3064-x\">https://doi.org/10.1007/s00220-017-3064-x</a>."},"abstract":[{"text":"We analyse the canonical Bogoliubov free energy functional in three dimensions at low temperatures in the dilute limit. We prove existence of a first-order phase transition and, in the limit (Formula presented.), we determine the critical temperature to be (Formula presented.) to leading order. Here, (Formula presented.) is the critical temperature of the free Bose gas, ρ is the density of the gas and a is the scattering length of the pair-interaction potential V. We also prove asymptotic expansions for the free energy. In particular, we recover the Lee–Huang–Yang formula in the limit (Formula presented.).","lang":"eng"}],"scopus_import":"1","doi":"10.1007/s00220-017-3064-x","intvolume":"       360","publication_status":"published","publisher":"Springer","type":"journal_article","status":"public","date_updated":"2025-07-10T11:52:52Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"RoSe"}],"day":"01","main_file_link":[{"url":"https://arxiv.org/abs/1511.05953","open_access":"1"}],"title":"The Bogoliubov free energy functional II: The dilute Limit","author":[{"last_name":"Napiórkowski","first_name":"Marcin M","full_name":"Napiórkowski, Marcin M","id":"4197AD04-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Reuvers, Robin","last_name":"Reuvers","first_name":"Robin"},{"first_name":"Jan","last_name":"Solovej","full_name":"Solovej, Jan"}],"external_id":{"arxiv":["1511.05953"]},"oa":1,"date_published":"2018-05-01T00:00:00Z","publication_identifier":{"issn":["0010-3616"]},"arxiv":1,"publication":"Communications in Mathematical Physics","publist_id":"7260","oa_version":"Submitted Version","date_created":"2018-12-11T11:47:09Z","project":[{"call_identifier":"FWF","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","_id":"25C878CE-B435-11E9-9278-68D0E5697425","grant_number":"P27533_N27"}],"_id":"554"},{"language":[{"iso":"eng"}],"volume":50,"quality_controlled":"1","year":"2018","month":"06","page":"65 - 74","article_processing_charge":"No","isi":1,"citation":{"ama":"Richter R, Baranova NS, Day A, Kwok J. Glycosaminoglycans in extracellular matrix organisation: Are concepts from soft matter physics key to understanding the formation of perineuronal nets? <i>Current Opinion in Structural Biology</i>. 2018;50:65-74. doi:<a href=\"https://doi.org/10.1016/j.sbi.2017.12.002\">10.1016/j.sbi.2017.12.002</a>","short":"R. Richter, N.S. Baranova, A. Day, J. Kwok, Current Opinion in Structural Biology 50 (2018) 65–74.","chicago":"Richter, Ralf, Natalia S. Baranova, Anthony Day, and Jessica Kwok. “Glycosaminoglycans in Extracellular Matrix Organisation: Are Concepts from Soft Matter Physics Key to Understanding the Formation of Perineuronal Nets?” <i>Current Opinion in Structural Biology</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.sbi.2017.12.002\">https://doi.org/10.1016/j.sbi.2017.12.002</a>.","ieee":"R. Richter, N. S. Baranova, A. Day, and J. Kwok, “Glycosaminoglycans in extracellular matrix organisation: Are concepts from soft matter physics key to understanding the formation of perineuronal nets?,” <i>Current Opinion in Structural Biology</i>, vol. 50. Elsevier, pp. 65–74, 2018.","ista":"Richter R, Baranova NS, Day A, Kwok J. 2018. Glycosaminoglycans in extracellular matrix organisation: Are concepts from soft matter physics key to understanding the formation of perineuronal nets? Current Opinion in Structural Biology. 50, 65–74.","apa":"Richter, R., Baranova, N. S., Day, A., &#38; Kwok, J. (2018). Glycosaminoglycans in extracellular matrix organisation: Are concepts from soft matter physics key to understanding the formation of perineuronal nets? <i>Current Opinion in Structural Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.sbi.2017.12.002\">https://doi.org/10.1016/j.sbi.2017.12.002</a>","mla":"Richter, Ralf, et al. “Glycosaminoglycans in Extracellular Matrix Organisation: Are Concepts from Soft Matter Physics Key to Understanding the Formation of Perineuronal Nets?” <i>Current Opinion in Structural Biology</i>, vol. 50, Elsevier, 2018, pp. 65–74, doi:<a href=\"https://doi.org/10.1016/j.sbi.2017.12.002\">10.1016/j.sbi.2017.12.002</a>."},"abstract":[{"text":"Conventional wisdom has it that proteins fold and assemble into definite structures, and that this defines their function. Glycosaminoglycans (GAGs) are different. In most cases the structures they form have a low degree of order, even when interacting with proteins. Here, we discuss how physical features common to all GAGs — hydrophilicity, charge, linearity and semi-flexibility — underpin the overall properties of GAG-rich matrices. By integrating soft matter physics concepts (e.g. polymer brushes and phase separation) with our molecular understanding of GAG–protein interactions, we can better comprehend how GAG-rich matrices assemble, what their properties are, and how they function. Taking perineuronal nets (PNNs) — a GAG-rich matrix enveloping neurons — as a relevant example, we propose that microphase separation determines the holey PNN anatomy that is pivotal to PNN functions.","lang":"eng"}],"scopus_import":"1","doi":"10.1016/j.sbi.2017.12.002","intvolume":"        50","publication_status":"published","publisher":"Elsevier","type":"journal_article","status":"public","date_updated":"2023-09-11T14:07:03Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","acknowledgement":"This work was supported by the European Research Council [Starting Grant 306435 ‘JELLY’; to RPR], the Spanish Ministry of Competitiveness and Innovation [MAT2014-54867-R, to RPR], the EPSRC Centre for Doctoral Training in Tissue Engineering and Regenerative Medicine — Innovation in Medical and Biological Engineering [EP/L014823/1, to JCFK], the Royal Society [RG160410, to JCFK], Wings for Life [WFL-UK-008/15, to JCFK] and the European Union, the Operational Programme Research, Development and Education in the framework of the project ‘Centre of Reconstructive Neuroscience’ [CZ.02.1.01/0.0./0.0/15_003/0000419, to JCFK]. AJD would like to thank Arthritis Research UK [16539, 19489] and the MRC [76445, G0900538] for funding his work on GAG–protein interactions.\r\n","article_type":"original","day":"01","department":[{"_id":"MaLo"}],"author":[{"full_name":"Richter, Ralf","first_name":"Ralf","last_name":"Richter"},{"last_name":"Baranova","first_name":"Natalia","full_name":"Baranova, Natalia","orcid":"0000-0002-3086-9124","id":"38661662-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Anthony","last_name":"Day","full_name":"Day, Anthony"},{"full_name":"Kwok, Jessica","first_name":"Jessica","last_name":"Kwok"}],"main_file_link":[{"url":"http://eprints.whiterose.ac.uk/125524/","open_access":"1"}],"title":"Glycosaminoglycans in extracellular matrix organisation: Are concepts from soft matter physics key to understanding the formation of perineuronal nets?","oa":1,"external_id":{"isi":["000443661300011"]},"date_published":"2018-06-01T00:00:00Z","publication":"Current Opinion in Structural Biology","publist_id":"7259","date_created":"2018-12-11T11:47:09Z","oa_version":"Submitted Version","_id":"555"},{"department":[{"_id":"LaEr"},{"_id":"JaMa"}],"day":"13","ec_funded":1,"article_type":"original","title":"The free boundary Schur process and applications I","author":[{"full_name":"Betea, Dan","first_name":"Dan","last_name":"Betea"},{"last_name":"Bouttier","first_name":"Jeremie","full_name":"Bouttier, Jeremie"},{"id":"4BF426E2-F248-11E8-B48F-1D18A9856A87","last_name":"Nejjar","first_name":"Peter","full_name":"Nejjar, Peter"},{"first_name":"Mirjana","last_name":"Vuletic","full_name":"Vuletic, Mirjana"}],"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_updated":"2025-09-18T07:34:29Z","status":"public","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publist_id":"7258","file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:47:03Z","access_level":"open_access","file_id":"5866","creator":"dernst","file_name":"2018_Annales_Betea.pdf","relation":"main_file","file_size":3084674,"date_created":"2019-01-21T15:18:55Z","checksum":"0c38abe73569b7166b7487ad5d23cc68"}],"publication":"Annales Henri Poincare","project":[{"grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems"},{"name":"Optimal Transport and Stochastic Dynamics","call_identifier":"H2020","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425"}],"_id":"556","oa_version":"Published Version","date_created":"2018-12-11T11:47:09Z","external_id":{"isi":["000450487900003"],"arxiv":["1704.05809"]},"oa":1,"publication_identifier":{"issn":["1424-0637"]},"arxiv":1,"date_published":"2018-11-13T00:00:00Z","page":"3663-3742","issue":"12","file_date_updated":"2020-07-14T12:47:03Z","month":"11","isi":1,"license":"https://creativecommons.org/licenses/by/4.0/","article_processing_charge":"Yes (via OA deal)","volume":19,"language":[{"iso":"eng"}],"ddc":["500"],"year":"2018","quality_controlled":"1","intvolume":"        19","has_accepted_license":"1","type":"journal_article","publisher":"Springer Nature","publication_status":"published","abstract":[{"text":"We investigate the free boundary Schur process, a variant of the Schur process introduced by Okounkov and Reshetikhin, where we allow the first and the last partitions to be arbitrary (instead of empty in the original setting). The pfaffian Schur process, previously studied by several authors, is recovered when just one of the boundary partitions is left free. We compute the correlation functions of the process in all generality via the free fermion formalism, which we extend with the thorough treatment of “free boundary states.” For the case of one free boundary, our approach yields a new proof that the process is pfaffian. For the case of two free boundaries, we find that the process is not pfaffian, but a closely related process is. We also study three different applications of the Schur process with one free boundary: fluctuations of symmetrized last passage percolation models, limit shapes and processes for symmetric plane partitions and for plane overpartitions.","lang":"eng"}],"citation":{"short":"D. Betea, J. Bouttier, P. Nejjar, M. Vuletic, Annales Henri Poincare 19 (2018) 3663–3742.","ama":"Betea D, Bouttier J, Nejjar P, Vuletic M. The free boundary Schur process and applications I. <i>Annales Henri Poincare</i>. 2018;19(12):3663-3742. doi:<a href=\"https://doi.org/10.1007/s00023-018-0723-1\">10.1007/s00023-018-0723-1</a>","ieee":"D. Betea, J. Bouttier, P. Nejjar, and M. Vuletic, “The free boundary Schur process and applications I,” <i>Annales Henri Poincare</i>, vol. 19, no. 12. Springer Nature, pp. 3663–3742, 2018.","chicago":"Betea, Dan, Jeremie Bouttier, Peter Nejjar, and Mirjana Vuletic. “The Free Boundary Schur Process and Applications I.” <i>Annales Henri Poincare</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1007/s00023-018-0723-1\">https://doi.org/10.1007/s00023-018-0723-1</a>.","ista":"Betea D, Bouttier J, Nejjar P, Vuletic M. 2018. The free boundary Schur process and applications I. Annales Henri Poincare. 19(12), 3663–3742.","mla":"Betea, Dan, et al. “The Free Boundary Schur Process and Applications I.” <i>Annales Henri Poincare</i>, vol. 19, no. 12, Springer Nature, 2018, pp. 3663–742, doi:<a href=\"https://doi.org/10.1007/s00023-018-0723-1\">10.1007/s00023-018-0723-1</a>.","apa":"Betea, D., Bouttier, J., Nejjar, P., &#38; Vuletic, M. (2018). The free boundary Schur process and applications I. <i>Annales Henri Poincare</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00023-018-0723-1\">https://doi.org/10.1007/s00023-018-0723-1</a>"},"doi":"10.1007/s00023-018-0723-1","scopus_import":"1"},{"publist_id":"7385","file":[{"relation":"main_file","checksum":"61ebb92213cfffeba3ddbaff984b81af","date_created":"2018-12-12T13:04:39Z","file_size":3558703796,"creator":"system","file_name":"IST-2018-74-v1+2_15-11-05.zip","file_id":"5637","date_updated":"2020-07-14T12:47:04Z","content_type":"application/zip","access_level":"open_access"},{"relation":"main_file","checksum":"bf26649af310ef6892d68576515cde6d","date_created":"2018-12-12T13:04:55Z","file_size":1830422606,"creator":"system","file_name":"IST-2018-74-v1+3_15-07-31.zip","file_id":"5638","date_updated":"2020-07-14T12:47:04Z","content_type":"application/zip","access_level":"open_access"},{"date_updated":"2020-07-14T12:47:04Z","content_type":"application/zip","access_level":"open_access","file_id":"5639","creator":"system","file_name":"IST-2018-74-v1+4_Images_for_analysis.zip","relation":"main_file","checksum":"8e46eedce06f22acb2be1a9b9d3f56bd","date_created":"2018-12-12T13:05:11Z","file_size":2140849248}],"has_accepted_license":"1","type":"research_data","_id":"5569","publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","date_created":"2018-12-12T12:31:35Z","abstract":[{"text":"Nela Nikolic, Tobias Bergmiller, Alexandra Vandervelde, Tanino G. Albanese, Lendert Gelens, and Isabella Moll (2018)\r\n“Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations” Nucleic Acids Research, doi: 10.15479/AT:ISTA:74;\r\nmicroscopy experiments by Tobias Bergmiller; image and data analysis by Nela Nikolic.","lang":"eng"}],"citation":{"ista":"Bergmiller T, Nikolic N. 2018. Time-lapse microscopy data, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:74\">10.15479/AT:ISTA:74</a>.","chicago":"Bergmiller, Tobias, and Nela Nikolic. “Time-Lapse Microscopy Data.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:74\">https://doi.org/10.15479/AT:ISTA:74</a>.","ieee":"T. Bergmiller and N. Nikolic, “Time-lapse microscopy data.” Institute of Science and Technology Austria, 2018.","short":"T. Bergmiller, N. Nikolic, (2018).","ama":"Bergmiller T, Nikolic N. Time-lapse microscopy data. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:74\">10.15479/AT:ISTA:74</a>","mla":"Bergmiller, Tobias, and Nela Nikolic. <i>Time-Lapse Microscopy Data</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:74\">10.15479/AT:ISTA:74</a>.","apa":"Bergmiller, T., &#38; Nikolic, N. (2018). Time-lapse microscopy data. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:74\">https://doi.org/10.15479/AT:ISTA:74</a>"},"oa":1,"related_material":{"record":[{"status":"public","id":"438","relation":"research_paper"}]},"doi":"10.15479/AT:ISTA:74","date_published":"2018-02-07T00:00:00Z","department":[{"_id":"CaGu"}],"day":"07","file_date_updated":"2020-07-14T12:47:04Z","month":"02","license":"https://creativecommons.org/publicdomain/zero/1.0/","title":"Time-lapse microscopy data","author":[{"id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","last_name":"Bergmiller","first_name":"Tobias","orcid":"0000-0001-5396-4346","full_name":"Bergmiller, Tobias"},{"full_name":"Nikolic, Nela","orcid":"0000-0001-9068-6090","last_name":"Nikolic","first_name":"Nela","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"keyword":["microscopy","microfluidics"],"date_updated":"2026-04-16T12:20:36Z","status":"public","datarep_id":"74","ddc":["579"],"year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"related_material":{"link":[{"url":"https://doi.org/10.1007/978-3-319-24947-6_23","relation":"research_paper"}]},"doi":"10.15479/AT:ISTA:82","date_published":"2018-01-04T00:00:00Z","abstract":[{"text":"Graph matching problems for large displacement optical flow of RGB-D images.","lang":"eng"}],"citation":{"ista":"Alhaija H, Sellent A, Kondermann D, Rother C. 2018. Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:82\">10.15479/AT:ISTA:82</a>.","ieee":"H. Alhaija, A. Sellent, D. Kondermann, and C. Rother, “Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow.” Institute of Science and Technology Austria, 2018.","chicago":"Alhaija, Hassan, Anita Sellent, Daniel Kondermann, and Carsten Rother. “Graph Matching Problems for GraphFlow – 6D Large Displacement Scene Flow.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:82\">https://doi.org/10.15479/AT:ISTA:82</a>.","short":"H. Alhaija, A. Sellent, D. Kondermann, C. Rother, (2018).","ama":"Alhaija H, Sellent A, Kondermann D, Rother C. Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:82\">10.15479/AT:ISTA:82</a>","apa":"Alhaija, H., Sellent, A., Kondermann, D., &#38; Rother, C. (2018). Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:82\">https://doi.org/10.15479/AT:ISTA:82</a>","mla":"Alhaija, Hassan, et al. <i>Graph Matching Problems for GraphFlow – 6D Large Displacement Scene Flow</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:82\">10.15479/AT:ISTA:82</a>."},"oa":1,"_id":"5573","publisher":"Institute of Science and Technology Austria","type":"research_data","oa_version":"Published Version","date_created":"2018-12-12T12:31:36Z","file":[{"file_id":"5600","date_updated":"2020-07-14T12:47:05Z","content_type":"application/zip","access_level":"open_access","relation":"main_file","checksum":"53c17082848e12f3c2e1b4185b578208","date_created":"2018-12-12T13:02:34Z","file_size":1737958,"creator":"system","file_name":"IST-2018-82-v1+1_GraphFlowMatchingProblems.zip"}],"has_accepted_license":"1","year":"2018","ddc":["001"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"keyword":["graph matching","quadratic assignment problem<"],"date_updated":"2024-02-21T13:41:17Z","status":"public","datarep_id":"82","author":[{"full_name":"Alhaija, Hassan","first_name":"Hassan","last_name":"Alhaija"},{"first_name":"Anita","last_name":"Sellent","full_name":"Sellent, Anita"},{"full_name":"Kondermann, Daniel","last_name":"Kondermann","first_name":"Daniel"},{"last_name":"Rother","first_name":"Carsten","full_name":"Rother, Carsten"}],"title":"Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow","article_processing_charge":"No","contributor":[{"contributor_type":"researcher","id":"446560C6-F248-11E8-B48F-1D18A9856A87","first_name":"Paul","last_name":"Swoboda"}],"day":"04","department":[{"_id":"VlKo"}],"file_date_updated":"2020-07-14T12:47:05Z","month":"01"},{"tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"keyword":["Publication analysis","Bibliography","Open Access"],"date_updated":"2026-06-18T18:35:06Z","status":"public","datarep_id":"86","ddc":["020"],"year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"16","department":[{"_id":"E-Lib"}],"file_date_updated":"2020-07-14T12:47:05Z","month":"01","title":"Data Check IOP Scopus vs. Publisher","author":[{"id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","first_name":"Márton","orcid":"0000-0001-8126-0426","full_name":"Villányi, Márton"}],"article_processing_charge":"No","abstract":[{"text":"Comparison of Scopus' and publisher's data on Austrian publication output at IOP. ","lang":"ger"}],"citation":{"ieee":"M. Villányi, “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018.","chicago":"Villányi, Márton. “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:86\">https://doi.org/10.15479/AT:ISTA:86</a>.","ista":"Villányi M. 2018. Data Check IOP Scopus vs. Publisher, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:86\">10.15479/AT:ISTA:86</a>.","ama":"Villányi M. Data Check IOP Scopus vs. Publisher. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:86\">10.15479/AT:ISTA:86</a>","short":"M. Villányi, (2018).","mla":"Villányi, Márton. <i>Data Check IOP Scopus vs. Publisher</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:86\">10.15479/AT:ISTA:86</a>.","apa":"Villányi, M. (2018). Data Check IOP Scopus vs. Publisher. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:86\">https://doi.org/10.15479/AT:ISTA:86</a>"},"oa":1,"related_material":{"record":[{"id":"278","relation":"part_of_dissertation","status":"public"}]},"doi":"10.15479/AT:ISTA:86","date_published":"2018-01-16T00:00:00Z","file":[{"file_id":"5642","access_level":"open_access","content_type":"application/zip","date_updated":"2020-07-14T12:47:05Z","file_size":12283857,"date_created":"2018-12-12T13:05:14Z","checksum":"c7a61147bd15cb4ae45878d270628c06","relation":"main_file","file_name":"IST-2018-86-v1+1_Data_Check_IOP_Scopus_vs._Publisher.zip","creator":"system"}],"has_accepted_license":"1","_id":"5574","publisher":"Institute of Science and Technology Austria","type":"research_data","oa_version":"Submitted Version","date_created":"2018-12-12T12:31:37Z"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","ddc":["020"],"status":"public","datarep_id":"87","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"keyword":["Publication analysis","Bibliography","Open Access"],"date_updated":"2026-06-18T18:35:06Z","article_processing_charge":"No","author":[{"id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","first_name":"Márton","last_name":"Villányi","orcid":"0000-0001-8126-0426","full_name":"Villányi, Márton"}],"title":"Data Check RSC Scopus vs. FWF","month":"01","department":[{"_id":"E-Lib"}],"day":"16","file_date_updated":"2020-07-14T12:47:05Z","date_published":"2018-01-16T00:00:00Z","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"278"}]},"doi":"10.15479/AT:ISTA:87","citation":{"mla":"Villányi, Márton. <i>Data Check RSC Scopus vs. FWF</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>.","apa":"Villányi, M. (2018). Data Check RSC Scopus vs. FWF. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:87\">https://doi.org/10.15479/AT:ISTA:87</a>","chicago":"Villányi, Márton. “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:87\">https://doi.org/10.15479/AT:ISTA:87</a>.","ista":"Villányi M. 2018. Data Check RSC Scopus vs. FWF, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>.","ieee":"M. Villányi, “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018.","ama":"Villányi M. Data Check RSC Scopus vs. FWF. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>","short":"M. Villányi, (2018)."},"oa":1,"abstract":[{"lang":"ger","text":"Comparison of Scopus' and FWF's data on Austrian publication output at RSC. "}],"oa_version":"Submitted Version","date_created":"2018-12-12T12:31:37Z","_id":"5575","publisher":"Institute of Science and Technology Austria","type":"research_data","has_accepted_license":"1","file":[{"access_level":"open_access","content_type":"application/zip","date_updated":"2020-07-14T12:47:05Z","file_id":"5610","file_name":"IST-2018-87-v1+1_Data_Check_RSC_Scopus_vs._FWF.zip","creator":"system","file_size":277078,"date_created":"2018-12-12T13:02:44Z","checksum":"563cc5266c0bac354007873c92be777b","relation":"main_file"}]},{"author":[{"last_name":"Villányi","first_name":"Márton","full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87"}],"title":"Data Check T&F Scopus vs. FWF","article_processing_charge":"No","department":[{"_id":"E-Lib"}],"day":"16","file_date_updated":"2020-07-14T12:47:05Z","month":"01","year":"2018","ddc":["020"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"date_updated":"2026-06-18T18:35:06Z","keyword":["Publication analysis","Bibliography","Open Access"],"status":"public","datarep_id":"88","_id":"5576","type":"research_data","publisher":"Institute of Science and Technology Austria","oa_version":"Submitted Version","date_created":"2018-12-12T12:31:37Z","file":[{"creator":"system","file_name":"IST-2018-88-v1+1_Data_Check_T_F_Scopus_vs._FWF.zip","relation":"main_file","file_size":741195,"date_created":"2018-12-12T13:02:32Z","checksum":"a887246c2b41b98df90ccbc1d62b4487","content_type":"application/zip","date_updated":"2020-07-14T12:47:05Z","access_level":"open_access","file_id":"5598"}],"has_accepted_license":"1","related_material":{"record":[{"id":"278","relation":"part_of_dissertation","status":"public"}]},"doi":"10.15479/AT:ISTA:88","date_published":"2018-01-16T00:00:00Z","abstract":[{"text":"Comparison of Scopus' and FWF's data on Austrian publication output at T&F.","lang":"ger"}],"citation":{"mla":"Villányi, Márton. <i>Data Check T&#38;F Scopus vs. FWF</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>.","apa":"Villányi, M. (2018). Data Check T&#38;F Scopus vs. FWF. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:88\">https://doi.org/10.15479/AT:ISTA:88</a>","ista":"Villányi M. 2018. Data Check T&#38;F Scopus vs. FWF, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>.","ieee":"M. Villányi, “Data Check T&#38;F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018.","chicago":"Villányi, Márton. “Data Check T&#38;F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:88\">https://doi.org/10.15479/AT:ISTA:88</a>.","ama":"Villányi M. Data Check T&#38;F Scopus vs. FWF. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>","short":"M. Villányi, (2018)."},"oa":1},{"month":"01","day":"16","department":[{"_id":"E-Lib"}],"file_date_updated":"2020-07-14T12:47:06Z","article_processing_charge":"No","author":[{"full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426","first_name":"Márton","last_name":"Villányi","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87"}],"title":"Emerald Austrian Publications 2013-2017","status":"public","datarep_id":"89","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"date_updated":"2026-06-18T18:35:06Z","keyword":["Publication analysis","Bibliography","Open Access"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","ddc":["020"],"has_accepted_license":"1","file":[{"file_id":"5604","access_level":"open_access","content_type":"application/zip","date_updated":"2020-07-14T12:47:06Z","file_size":222011,"checksum":"786b599abfae6c355dee87835f414549","date_created":"2018-12-12T13:02:39Z","relation":"main_file","file_name":"IST-2018-89-v1+1_Emerald_Austrian_Publications_2013-2017.zip","creator":"system"}],"oa_version":"Submitted Version","date_created":"2018-12-12T12:31:37Z","_id":"5577","publisher":"Institute of Science and Technology Austria","type":"research_data","citation":{"mla":"Villányi, Márton. <i>Emerald Austrian Publications 2013-2017</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:89\">10.15479/AT:ISTA:89</a>.","apa":"Villányi, M. (2018). Emerald Austrian Publications 2013-2017. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:89\">https://doi.org/10.15479/AT:ISTA:89</a>","ista":"Villányi M. 2018. Emerald Austrian Publications 2013-2017, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:89\">10.15479/AT:ISTA:89</a>.","ieee":"M. Villányi, “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","chicago":"Villányi, Márton. “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:89\">https://doi.org/10.15479/AT:ISTA:89</a>.","short":"M. Villányi, (2018).","ama":"Villányi M. Emerald Austrian Publications 2013-2017. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:89\">10.15479/AT:ISTA:89</a>"},"oa":1,"abstract":[{"text":"Data on Austrian open access publication output at Emerald from 2013-2017 including data analysis.","lang":"ger"}],"date_published":"2018-01-16T00:00:00Z","related_material":{"record":[{"relation":"part_of_dissertation","id":"278","status":"public"}]},"doi":"10.15479/AT:ISTA:89"},{"keyword":["Publication analysis","Bibliography","Open Access"],"date_updated":"2026-06-18T18:35:06Z","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"datarep_id":"90","status":"public","year":"2018","ddc":["020"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2020-07-14T12:47:06Z","day":"16","department":[{"_id":"E-Lib"}],"month":"01","author":[{"orcid":"0000-0001-8126-0426","full_name":"Villányi, Márton","first_name":"Márton","last_name":"Villányi","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87"}],"title":"IOP Austrian Publications 2012-2015","article_processing_charge":"No","abstract":[{"text":"Data on Austrian open access publication output at IOP from 2012-2015 including data analysis.","lang":"ger"}],"oa":1,"citation":{"apa":"Villányi, M. (2018). IOP Austrian Publications 2012-2015. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:90\">https://doi.org/10.15479/AT:ISTA:90</a>","mla":"Villányi, Márton. <i>IOP Austrian Publications 2012-2015</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:90\">10.15479/AT:ISTA:90</a>.","chicago":"Villányi, Márton. “IOP Austrian Publications 2012-2015.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:90\">https://doi.org/10.15479/AT:ISTA:90</a>.","ieee":"M. Villányi, “IOP Austrian Publications 2012-2015.” Institute of Science and Technology Austria, 2018.","ista":"Villányi M. 2018. IOP Austrian Publications 2012-2015, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:90\">10.15479/AT:ISTA:90</a>.","ama":"Villányi M. IOP Austrian Publications 2012-2015. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:90\">10.15479/AT:ISTA:90</a>","short":"M. Villányi, (2018)."},"doi":"10.15479/AT:ISTA:90","related_material":{"record":[{"status":"public","id":"278","relation":"part_of_dissertation"}]},"date_published":"2018-01-16T00:00:00Z","file":[{"file_id":"5624","date_updated":"2020-07-14T12:47:06Z","content_type":"application/zip","access_level":"open_access","relation":"main_file","checksum":"a4f1bf041ccd4c35912e2d595b0c2883","date_created":"2018-12-12T13:03:06Z","file_size":237067,"creator":"system","file_name":"IST-2018-90-v1+1_IOP_Austrian_Publications_2012-2015.zip"}],"has_accepted_license":"1","_id":"5578","type":"research_data","publisher":"Institute of Science and Technology Austria","date_created":"2018-12-12T12:31:38Z","oa_version":"Submitted Version"},{"oa_version":"Submitted Version","date_created":"2018-12-12T12:31:38Z","_id":"5579","publisher":"Institute of Science and Technology Austria","type":"research_data","has_accepted_license":"1","file":[{"file_id":"5605","content_type":"application/zip","date_updated":"2020-07-14T12:47:06Z","access_level":"open_access","relation":"main_file","file_size":791408,"date_created":"2018-12-12T13:02:40Z","checksum":"2a73efc5f94f8deb00e2b08c3dff8547","creator":"system","file_name":"IST-2018-91-v1+1_RSC_Austrian__Publications_2013-2017.zip"}],"date_published":"2018-01-16T00:00:00Z","related_material":{"record":[{"relation":"part_of_dissertation","id":"278","status":"public"}]},"doi":"10.15479/AT:ISTA:91","citation":{"apa":"Villányi, M. (2018). RSC Austrian Publications 2013-2017. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:91\">https://doi.org/10.15479/AT:ISTA:91</a>","mla":"Villányi, Márton. <i>RSC Austrian Publications 2013-2017</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:91\">10.15479/AT:ISTA:91</a>.","chicago":"Villányi, Márton. “RSC Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:91\">https://doi.org/10.15479/AT:ISTA:91</a>.","ieee":"M. Villányi, “RSC Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","ista":"Villányi M. 2018. RSC Austrian Publications 2013-2017, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:91\">10.15479/AT:ISTA:91</a>.","ama":"Villányi M. RSC Austrian Publications 2013-2017. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:91\">10.15479/AT:ISTA:91</a>","short":"M. Villányi, (2018)."},"oa":1,"abstract":[{"lang":"eng","text":"Data on Austrian open access publication output at RSC from 2013-2017 including data analysis."}],"article_processing_charge":"No","title":"RSC Austrian Publications 2013-2017","author":[{"orcid":"0000-0001-8126-0426","full_name":"Villányi, Márton","last_name":"Villányi","first_name":"Márton","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87"}],"month":"01","department":[{"_id":"E-Lib"}],"day":"16","file_date_updated":"2020-07-14T12:47:06Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","ddc":["020"],"status":"public","datarep_id":"91","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"date_updated":"2026-06-18T18:35:06Z","keyword":["Publication analysis","Bibliography","Open Access"]},{"status":"public","datarep_id":"92","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"date_updated":"2026-06-18T18:35:06Z","keyword":["Publication analysis","Bibliography","Open Access"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["020"],"year":"2018","month":"01","department":[{"_id":"E-Lib"}],"day":"16","file_date_updated":"2020-07-14T12:47:06Z","article_processing_charge":"No","author":[{"id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","first_name":"Márton","last_name":"Villányi","full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426"}],"title":"SAGE Austrian Publications 2013-2017","citation":{"ama":"Villányi M. SAGE Austrian Publications 2013-2017. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:92\">10.15479/AT:ISTA:92</a>","short":"M. Villányi, (2018).","ieee":"M. Villányi, “SAGE Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","ista":"Villányi M. 2018. SAGE Austrian Publications 2013-2017, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:92\">10.15479/AT:ISTA:92</a>.","chicago":"Villányi, Márton. “SAGE Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:92\">https://doi.org/10.15479/AT:ISTA:92</a>.","mla":"Villányi, Márton. <i>SAGE Austrian Publications 2013-2017</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:92\">10.15479/AT:ISTA:92</a>.","apa":"Villányi, M. (2018). SAGE Austrian Publications 2013-2017. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:92\">https://doi.org/10.15479/AT:ISTA:92</a>"},"oa":1,"abstract":[{"text":"Data on Austrian open access publication output at SAGE from 2013-2017 including data analysis.","lang":"ger"}],"date_published":"2018-01-16T00:00:00Z","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"278"}]},"doi":"10.15479/AT:ISTA:92","has_accepted_license":"1","file":[{"access_level":"open_access","content_type":"application/zip","date_updated":"2020-07-14T12:47:06Z","file_id":"5619","file_name":"IST-2018-92-v1+1_SAGE_Austrian_Publications_2013-2017.zip","creator":"system","file_size":724017,"checksum":"1ed83efc33aab2fc5dbe5ffe95de5c2b","date_created":"2018-12-12T13:03:01Z","relation":"main_file"}],"oa_version":"Submitted Version","date_created":"2018-12-12T12:31:38Z","_id":"5580","publisher":"Institute of Science and Technology Austria","type":"research_data"},{"month":"01","file_date_updated":"2020-07-14T12:47:06Z","day":"16","department":[{"_id":"E-Lib"}],"article_processing_charge":"No","title":"Springer Austrian Publications 2013-2016","author":[{"last_name":"Villányi","first_name":"Márton","full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87"}],"datarep_id":"93","status":"public","keyword":["Publication analysis","Bibliography","Open Access"],"date_updated":"2026-06-18T18:35:06Z","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["020"],"year":"2018","has_accepted_license":"1","file":[{"creator":"system","file_name":"IST-2018-93-v1+1_Springer_Austrian_Publications_2013-2016.zip","relation":"main_file","file_size":304018,"date_created":"2018-12-12T13:05:20Z","checksum":"7cc8274975162a99ea4681dc344b927d","content_type":"application/zip","date_updated":"2020-07-14T12:47:06Z","access_level":"open_access","file_id":"5646"}],"date_created":"2018-12-12T12:31:39Z","oa_version":"Submitted Version","_id":"5581","type":"research_data","publisher":"Institute of Science and Technology Austria","oa":1,"citation":{"apa":"Villányi, M. (2018). Springer Austrian Publications 2013-2016. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:93\">https://doi.org/10.15479/AT:ISTA:93</a>","mla":"Villányi, Márton. <i>Springer Austrian Publications 2013-2016</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:93\">10.15479/AT:ISTA:93</a>.","short":"M. Villányi, (2018).","ama":"Villányi M. Springer Austrian Publications 2013-2016. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:93\">10.15479/AT:ISTA:93</a>","chicago":"Villányi, Márton. “Springer Austrian Publications 2013-2016.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:93\">https://doi.org/10.15479/AT:ISTA:93</a>.","ista":"Villányi M. 2018. Springer Austrian Publications 2013-2016, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:93\">10.15479/AT:ISTA:93</a>.","ieee":"M. Villányi, “Springer Austrian Publications 2013-2016.” Institute of Science and Technology Austria, 2018."},"abstract":[{"lang":"ger","text":"Data on Austrian open access publication output at Springer from 2013-2016 including data analysis."}],"date_published":"2018-01-16T00:00:00Z","doi":"10.15479/AT:ISTA:93","related_material":{"record":[{"relation":"part_of_dissertation","id":"278","status":"public"}]}},{"abstract":[{"text":"Data on Austrian open access publication output at Taylor&Francis from 2013-2017 including data analysis.","lang":"eng"}],"citation":{"mla":"Villányi, Márton. <i>Taylor&#38;Francis Austrian Publications 2013-2017</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:94\">10.15479/AT:ISTA:94</a>.","apa":"Villányi, M. (2018). Taylor&#38;Francis Austrian Publications 2013-2017. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:94\">https://doi.org/10.15479/AT:ISTA:94</a>","ieee":"M. Villányi, “Taylor&#38;Francis Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","chicago":"Villányi, Márton. “Taylor&#38;Francis Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:94\">https://doi.org/10.15479/AT:ISTA:94</a>.","ista":"Villányi M. 2018. Taylor&#38;Francis Austrian Publications 2013-2017, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:94\">10.15479/AT:ISTA:94</a>.","ama":"Villányi M. Taylor&#38;Francis Austrian Publications 2013-2017. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:94\">10.15479/AT:ISTA:94</a>","short":"M. Villányi, (2018)."},"oa":1,"related_material":{"record":[{"relation":"part_of_dissertation","id":"278","status":"public"}]},"doi":"10.15479/AT:ISTA:94","date_published":"2018-01-16T00:00:00Z","file":[{"file_id":"5617","access_level":"open_access","date_updated":"2020-07-14T12:47:07Z","content_type":"application/zip","date_created":"2018-12-12T13:02:59Z","checksum":"3e000daf15d7eb9a47b234f3d20dd4b8","file_size":2552326,"relation":"main_file","file_name":"IST-2018-94-v1+1_Taylor_Francis_Austrian_Publications_2013-2017.zip","creator":"system"}],"has_accepted_license":"1","type":"research_data","_id":"5582","publisher":"Institute of Science and Technology Austria","oa_version":"Submitted Version","date_created":"2018-12-12T12:31:39Z","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"date_updated":"2026-06-18T18:35:06Z","keyword":["Publication analysis","Bibliography","Open Access"],"status":"public","datarep_id":"94","year":"2018","ddc":["020"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"16","department":[{"_id":"E-Lib"}],"file_date_updated":"2020-07-14T12:47:07Z","month":"01","author":[{"id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","first_name":"Márton","full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426"}],"title":"Taylor&Francis Austrian Publications 2013-2017","article_processing_charge":"No"},{"year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-04-15T07:11:03Z","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"datarep_id":"95","status":"public","author":[{"id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","last_name":"Ellis","first_name":"Thomas","full_name":"Ellis, Thomas","orcid":"0000-0002-8511-0254"}],"title":"Data and Python scripts supporting Python package FAPS","article_processing_charge":"No","file_date_updated":"2020-07-14T12:47:07Z","department":[{"_id":"NiBa"}],"contributor":[{"first_name":"David","last_name":"Field","id":"419049E2-F248-11E8-B48F-1D18A9856A87"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H"}],"day":"12","month":"02","doi":"10.15479/AT:ISTA:95","related_material":{"record":[{"id":"286","relation":"research_paper","status":"public"}]},"date_published":"2018-02-12T00:00:00Z","abstract":[{"text":"Data and scripts are provided in support of the manuscript \"Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering\", and the associated Python package FAPS, available from www.github.com/ellisztamas/faps.\r\n\r\nSimulation scripts cover:\r\n1. Performance under different mating scenarios.\r\n2. Comparison with Colony2.\r\n3. Effect of changing the number of Monte Carlo draws\r\n\r\nThe final script covers the analysis of half-sib arrays from wild-pollinated seed in an Antirrhinum majus hybrid zone.","lang":"eng"}],"oa":1,"citation":{"chicago":"Ellis, Thomas. “Data and Python Scripts Supporting Python Package FAPS.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:95\">https://doi.org/10.15479/AT:ISTA:95</a>.","ista":"Ellis T. 2018. Data and Python scripts supporting Python package FAPS, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:95\">10.15479/AT:ISTA:95</a>.","ieee":"T. Ellis, “Data and Python scripts supporting Python package FAPS.” Institute of Science and Technology Austria, 2018.","short":"T. Ellis, (2018).","ama":"Ellis T. Data and Python scripts supporting Python package FAPS. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:95\">10.15479/AT:ISTA:95</a>","mla":"Ellis, Thomas. <i>Data and Python Scripts Supporting Python Package FAPS</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:95\">10.15479/AT:ISTA:95</a>.","apa":"Ellis, T. (2018). Data and Python scripts supporting Python package FAPS. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:95\">https://doi.org/10.15479/AT:ISTA:95</a>"},"_id":"5583","publisher":"Institute of Science and Technology Austria","type":"research_data","date_created":"2018-12-12T12:31:39Z","oa_version":"Published Version","file":[{"file_id":"5606","access_level":"open_access","content_type":"text/csv","date_updated":"2020-07-14T12:47:07Z","file_size":122048,"checksum":"fc6aab51439f2622ba6df8632e66fd4f","date_created":"2018-12-12T13:02:41Z","relation":"main_file","file_name":"IST-2018-95-v1+1_amajus_GPS_2012.csv","creator":"system"},{"relation":"main_file","file_size":235980,"date_created":"2018-12-12T13:02:42Z","checksum":"92347586ae4f8a6eb7c04354797bf314","creator":"system","file_name":"IST-2018-95-v1+2_offspring_SNPs_2012.csv","file_id":"5607","content_type":"text/csv","date_updated":"2020-07-14T12:47:07Z","access_level":"open_access"},{"file_name":"IST-2018-95-v1+3_parents_SNPs_2012.csv","creator":"system","file_size":311712,"checksum":"3300813645a54e6c5c39f41917228354","date_created":"2018-12-12T13:02:43Z","relation":"main_file","access_level":"open_access","content_type":"text/csv","date_updated":"2020-07-14T12:47:07Z","file_id":"5608"},{"relation":"main_file","file_size":342090,"checksum":"e739fc473567fd8f39438b445fc46147","date_created":"2018-12-12T13:02:44Z","creator":"system","file_name":"IST-2018-95-v1+4_faps_scripts.zip","file_id":"5609","content_type":"application/zip","date_updated":"2020-07-14T12:47:07Z","access_level":"open_access"}],"has_accepted_license":"1"},{"citation":{"short":"S. Deny, O. Marre, V. Botella-Soler, G.S. Martius, G. Tkačik, (2018).","ama":"Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. Nonlinear decoding of a complex movie from the mammalian retina. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:98\">10.15479/AT:ISTA:98</a>","ieee":"S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina.” Institute of Science and Technology Austria, 2018.","chicago":"Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gašper Tkačik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:98\">https://doi.org/10.15479/AT:ISTA:98</a>.","ista":"Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. 2018. Nonlinear decoding of a complex movie from the mammalian retina, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:98\">10.15479/AT:ISTA:98</a>.","mla":"Deny, Stephane, et al. <i>Nonlinear Decoding of a Complex Movie from the Mammalian Retina</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:98\">10.15479/AT:ISTA:98</a>.","apa":"Deny, S., Marre, O., Botella-Soler, V., Martius, G. S., &#38; Tkačik, G. (2018). Nonlinear decoding of a complex movie from the mammalian retina. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:98\">https://doi.org/10.15479/AT:ISTA:98</a>"},"oa":1,"abstract":[{"lang":"eng","text":"This package contains data for the publication \"Nonlinear decoding of a complex movie from the mammalian retina\" by Deny S. et al, PLOS Comput Biol (2018). \r\n\r\nThe data consists of\r\n(i) 91 spike sorted, isolated rat retinal ganglion cells that pass stability and quality criteria, recorded on the multi-electrode array, in response to the presentation of the complex movie with many randomly moving dark discs. The responses are represented as 648000 x 91 binary matrix, where the first index indicates the timebin of duration 12.5 ms, and the second index the neural identity. The matrix entry is 0/1 if the neuron didn't/did spike in the particular time bin.\r\n(ii) README file and a graphical illustration of the structure of the experiment, specifying how the 648000 timebins are split into epochs where 1, 2, 4, or 10 discs  were displayed, and which stimulus segments are exact repeats or unique ball trajectories.\r\n(iii) a 648000 x 400 matrix of luminance traces for each of the 20 x 20 positions (\"sites\") in the movie frame, with time that is locked to the recorded raster. The luminance traces are produced as described in the manuscript by filtering the raw disc movie with a small gaussian spatial kernel. "}],"date_published":"2018-03-29T00:00:00Z","related_material":{"record":[{"status":"public","id":"292","relation":"used_in_publication"}]},"doi":"10.15479/AT:ISTA:98","has_accepted_license":"1","file":[{"date_created":"2018-12-12T13:02:24Z","checksum":"6808748837b9afbbbabc2a356ca2b88a","file_size":1142543971,"relation":"main_file","file_name":"IST-2018-98-v1+1_BBalls_area2_tile2_20x20.mat","creator":"system","file_id":"5590","access_level":"open_access","date_updated":"2020-07-14T12:47:07Z","content_type":"application/octet-stream"},{"file_id":"5591","access_level":"open_access","date_updated":"2020-07-14T12:47:07Z","content_type":"application/pdf","date_created":"2018-12-12T13:02:25Z","checksum":"d6d6cd07743038fe3a12352983fcf9dd","file_size":702336,"relation":"main_file","file_name":"IST-2018-98-v1+2_ExperimentStructure.pdf","creator":"system"},{"relation":"main_file","checksum":"0c9cfb4dab35bb3dc25a04395600b1c8","date_created":"2018-12-12T13:02:26Z","file_size":432,"creator":"system","file_name":"IST-2018-98-v1+3_GoodLocations_area2_20x20.mat","file_id":"5592","date_updated":"2020-07-14T12:47:07Z","content_type":"application/octet-stream","access_level":"open_access"},{"relation":"main_file","checksum":"2a83b011012e21e934b4596285b1a183","date_created":"2018-12-12T13:02:26Z","file_size":986,"creator":"system","file_name":"IST-2018-98-v1+4_README.txt","file_id":"5593","date_updated":"2020-07-14T12:47:07Z","content_type":"text/plain","access_level":"open_access"}],"oa_version":"Published Version","date_created":"2018-12-12T12:31:39Z","project":[{"name":"Sensitivity to higher-order statistics in natural scenes","call_identifier":"FWF","grant_number":"P 25651-N26","_id":"254D1A94-B435-11E9-9278-68D0E5697425"}],"_id":"5584","publisher":"Institute of Science and Technology Austria","type":"research_data","status":"public","datarep_id":"98","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"keyword":["retina","decoding","regression","neural networks","complex stimulus"],"date_updated":"2025-04-15T08:18:24Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"year":"2018","month":"03","day":"29","department":[{"_id":"ChLa"},{"_id":"GaTk"}],"file_date_updated":"2020-07-14T12:47:07Z","article_processing_charge":"No","author":[{"full_name":"Deny, Stephane","first_name":"Stephane","last_name":"Deny"},{"last_name":"Marre","first_name":"Olivier","full_name":"Marre, Olivier"},{"first_name":"Vicente","last_name":"Botella-Soler","full_name":"Botella-Soler, Vicente"},{"full_name":"Martius, Georg S","first_name":"Georg S","last_name":"Martius","id":"3A276B68-F248-11E8-B48F-1D18A9856A87"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","full_name":"Tkacik, Gasper","orcid":"0000-0002-6699-1455","last_name":"Tkacik","first_name":"Gasper"}],"title":"Nonlinear decoding of a complex movie from the mammalian retina"},{"date_published":"2018-09-21T00:00:00Z","doi":"10.15479/AT:ISTA:62","related_material":{"record":[{"status":"public","relation":"research_paper","id":"161"}]},"oa":1,"citation":{"mla":"De Martino, Daniele, and Gašper Tkačik. <i>Supporting Materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.”</i> Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:62\">10.15479/AT:ISTA:62</a>.","apa":"De Martino, D., &#38; Tkačik, G. (2018). Supporting materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:62\">https://doi.org/10.15479/AT:ISTA:62</a>","ama":"De Martino D, Tkačik G. Supporting materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:62\">10.15479/AT:ISTA:62</a>","short":"D. De Martino, G. Tkačik, (2018).","chicago":"De Martino, Daniele, and Gašper Tkačik. “Supporting Materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:62\">https://doi.org/10.15479/AT:ISTA:62</a>.","ista":"De Martino D, Tkačik G. 2018. Supporting materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:62\">10.15479/AT:ISTA:62</a>.","ieee":"D. De Martino and G. Tkačik, “Supporting materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’” Institute of Science and Technology Austria, 2018."},"abstract":[{"text":"Supporting material to the article \r\nSTATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH\r\n\r\nboundscoli.dat\r\nFlux Bounds of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium. \r\n\r\npolcoli.dat\r\nMatrix enconding the polytope of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium, \r\nobtained from the soichiometric matrix by standard linear algebra  (reduced row echelon form).\r\n\r\nellis.dat\r\nApproximate Lowner-John ellipsoid rounding the polytope of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium\r\nobtained with the Lovasz method.\r\n\r\npoint0.dat\r\nCenter of the approximate Lowner-John ellipsoid rounding the polytope of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium\r\nobtained with the Lovasz method.\r\n\r\nlovasz.cpp  \r\nThis c++ code file receives in input the polytope of the feasible steady states of a metabolic network, \r\n(matrix and bounds), and it gives in output an approximate Lowner-John ellipsoid rounding the polytope\r\nwith the Lovasz method \r\nNB inputs are referred by defaults to the catabolic core of the E.Coli network iAF1260. \r\nFor further details we refer to  PLoS ONE 10.4 e0122670 (2015).\r\n\r\nsampleHRnew.cpp  \r\nThis c++ code file receives in input the polytope of the feasible steady states of a metabolic network, \r\n(matrix and bounds), the ellipsoid rounding the polytope, a point inside and  \r\nit gives in output a max entropy sampling at fixed average growth rate \r\nof the steady states by performing an Hit-and-Run Monte Carlo Markov chain.\r\nNB inputs are referred by defaults to the catabolic core of the E.Coli network iAF1260. \r\nFor further details we refer to  PLoS ONE 10.4 e0122670 (2015).","lang":"eng"}],"date_created":"2018-12-12T12:31:41Z","oa_version":"Published Version","type":"research_data","_id":"5587","publisher":"Institute of Science and Technology Austria","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"},{"name":"Biophysics of information processing in gene regulation","call_identifier":"FWF","grant_number":"P28844-B27","_id":"254E9036-B435-11E9-9278-68D0E5697425"}],"has_accepted_license":"1","file":[{"file_name":"IST-2018-111-v1+1_CODES.zip","creator":"system","file_size":14376,"date_created":"2018-12-12T13:05:13Z","checksum":"97992e3e8cf8544ec985a48971708726","relation":"main_file","access_level":"open_access","content_type":"application/zip","date_updated":"2020-07-14T12:47:08Z","file_id":"5641"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["530"],"year":"2018","datarep_id":"111","status":"public","keyword":["metabolic networks","e.coli core","maximum entropy","monte carlo markov chain sampling","ellipsoidal rounding"],"date_updated":"2025-04-15T06:50:08Z","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"article_processing_charge":"No","title":"Supporting materials \"STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH\"","author":[{"id":"3FF5848A-F248-11E8-B48F-1D18A9856A87","full_name":"De Martino, Daniele","orcid":"0000-0002-5214-4706","last_name":"De Martino","first_name":"Daniele"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455","full_name":"Tkacik, Gasper","last_name":"Tkacik","first_name":"Gasper"}],"month":"09","file_date_updated":"2020-07-14T12:47:08Z","ec_funded":1,"department":[{"_id":"GaTk"}],"day":"21"}]