[{"title":"Effect of a magnetic field on molecule–solvent angular momentum transfer","date_published":"2018-03-14T00:00:00Z","ec_funded":1,"publication":"The Journal of Chemical Physics","related_material":{"record":[{"relation":"dissertation_contains","id":"10759","status":"public"}]},"scopus_import":"1","type":"journal_article","article_processing_charge":"No","acknowledgement":"We acknowledge insightful discussions with Giacomo Bighin, Igor Cherepanov, Johan Mentink, and Enderalp Yakaboylu. This work was supported by the Austrian Science Fund (FWF), Project No. P29902-N27. W.R. was supported by the Polish Ministry of Science and Higher Education Grant No. MNISW/2016/DIR/285/NN and by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385.\r\n","status":"public","_id":"415","day":"14","publisher":"AIP Publishing","oa":1,"date_created":"2018-12-11T11:46:21Z","date_updated":"2026-04-07T14:20:12Z","abstract":[{"lang":"eng","text":"Recently it was shown that a molecule rotating in a quantum solvent can be described in terms of the “angulon” quasiparticle [M. Lemeshko, Phys. Rev. Lett. 118, 095301 (2017)]. Here we extend the angulon theory to the case of molecules possessing an additional spin-1/2 degree of freedom and study the behavior of the system in the presence of a static magnetic field. We show that exchange of angular momentum between the molecule and the solvent can be altered by the field, even though the solvent itself is non-magnetic. In particular, we demonstrate a possibility to control resonant emission of phonons with a given angular momentum using a magnetic field."}],"doi":"10.1063/1.5017591","citation":{"short":"W. Rzadkowski, M. Lemeshko, The Journal of Chemical Physics 148 (2018).","mla":"Rzadkowski, Wojciech, and Mikhail Lemeshko. “Effect of a Magnetic Field on Molecule–Solvent Angular Momentum Transfer.” <i>The Journal of Chemical Physics</i>, vol. 148, no. 10, 104307, AIP Publishing, 2018, doi:<a href=\"https://doi.org/10.1063/1.5017591\">10.1063/1.5017591</a>.","ieee":"W. Rzadkowski and M. Lemeshko, “Effect of a magnetic field on molecule–solvent angular momentum transfer,” <i>The Journal of Chemical Physics</i>, vol. 148, no. 10. AIP Publishing, 2018.","chicago":"Rzadkowski, Wojciech, and Mikhail Lemeshko. “Effect of a Magnetic Field on Molecule–Solvent Angular Momentum Transfer.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2018. <a href=\"https://doi.org/10.1063/1.5017591\">https://doi.org/10.1063/1.5017591</a>.","apa":"Rzadkowski, W., &#38; Lemeshko, M. (2018). Effect of a magnetic field on molecule–solvent angular momentum transfer. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.5017591\">https://doi.org/10.1063/1.5017591</a>","ama":"Rzadkowski W, Lemeshko M. Effect of a magnetic field on molecule–solvent angular momentum transfer. <i>The Journal of Chemical Physics</i>. 2018;148(10). doi:<a href=\"https://doi.org/10.1063/1.5017591\">10.1063/1.5017591</a>","ista":"Rzadkowski W, Lemeshko M. 2018. Effect of a magnetic field on molecule–solvent angular momentum transfer. The Journal of Chemical Physics. 148(10), 104307."},"volume":148,"language":[{"iso":"eng"}],"month":"03","issue":"10","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"7408","quality_controlled":"1","year":"2018","article_type":"original","article_number":"104307","isi":1,"department":[{"_id":"MiLe"}],"oa_version":"Preprint","publication_status":"published","project":[{"name":"Quantum rotations in the presence of a many-body environment","_id":"26031614-B435-11E9-9278-68D0E5697425","grant_number":"P29902","call_identifier":"FWF"},{"call_identifier":"H2020","grant_number":"665385","name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"intvolume":"       148","arxiv":1,"author":[{"last_name":"Rzadkowski","orcid":"0000-0002-1106-4419","id":"48C55298-F248-11E8-B48F-1D18A9856A87","first_name":"Wojciech","full_name":"Rzadkowski, Wojciech"},{"last_name":"Lemeshko","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"}],"main_file_link":[{"url":"https://arxiv.org/abs/1711.09904","open_access":"1"}],"external_id":{"arxiv":["1711.09904"],"isi":["000427517200065"]}},{"status":"public","article_processing_charge":"No","date_created":"2018-12-11T11:46:22Z","oa":1,"day":"16","publisher":"American Physical Society","_id":"417","abstract":[{"lang":"eng","text":"We introduce a Diagrammatic Monte Carlo (DiagMC) approach to complex molecular impurities with rotational degrees of freedom interacting with a many-particle environment. The treatment is based on the diagrammatic expansion that merges the usual Feynman diagrams with the angular momentum diagrams known from atomic and nuclear structure theory, thereby incorporating the non-Abelian algebra inherent to quantum rotations. Our approach works at arbitrary coupling, is free of systematic errors and of finite size effects, and naturally provides access to the impurity Green function. We exemplify the technique by obtaining an all-coupling solution of the angulon model, however, the method is quite general and can be applied to a broad variety of quantum impurities possessing angular momentum degrees of freedom. "}],"date_updated":"2025-04-15T07:59:27Z","language":[{"iso":"eng"}],"volume":121,"citation":{"short":"G. Bighin, T. Tscherbul, M. Lemeshko, Physical Review Letters 121 (2018).","mla":"Bighin, Giacomo, et al. “Diagrammatic Monte Carlo Approach to Rotating Molecular Impurities.” <i>Physical Review Letters</i>, vol. 121, no. 16, 165301, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.121.165301\">10.1103/PhysRevLett.121.165301</a>.","ieee":"G. Bighin, T. Tscherbul, and M. Lemeshko, “Diagrammatic Monte Carlo approach to rotating molecular impurities,” <i>Physical Review Letters</i>, vol. 121, no. 16. American Physical Society, 2018.","chicago":"Bighin, Giacomo, Timur Tscherbul, and Mikhail Lemeshko. “Diagrammatic Monte Carlo Approach to Rotating Molecular Impurities.” <i>Physical Review Letters</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/PhysRevLett.121.165301\">https://doi.org/10.1103/PhysRevLett.121.165301</a>.","apa":"Bighin, G., Tscherbul, T., &#38; Lemeshko, M. (2018). Diagrammatic Monte Carlo approach to rotating molecular impurities. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.121.165301\">https://doi.org/10.1103/PhysRevLett.121.165301</a>","ama":"Bighin G, Tscherbul T, Lemeshko M. Diagrammatic Monte Carlo approach to rotating molecular impurities. <i>Physical Review Letters</i>. 2018;121(16). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.121.165301\">10.1103/PhysRevLett.121.165301</a>","ista":"Bighin G, Tscherbul T, Lemeshko M. 2018. Diagrammatic Monte Carlo approach to rotating molecular impurities. Physical Review Letters. 121(16), 165301."},"doi":"10.1103/PhysRevLett.121.165301","title":"Diagrammatic Monte Carlo approach to rotating molecular impurities","publication":"Physical Review Letters","date_published":"2018-10-16T00:00:00Z","type":"journal_article","scopus_import":"1","oa_version":"Preprint","publication_status":"published","intvolume":"       121","project":[{"_id":"26031614-B435-11E9-9278-68D0E5697425","name":"Quantum rotations in the presence of a many-body environment","call_identifier":"FWF","grant_number":"P29902"}],"external_id":{"arxiv":["1803.07990"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1803.07990"}],"author":[{"last_name":"Bighin","orcid":"0000-0001-8823-9777","id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87","first_name":"Giacomo","full_name":"Bighin, Giacomo"},{"first_name":"Timur","full_name":"Tscherbul, Timur","last_name":"Tscherbul"},{"orcid":"0000-0002-6990-7802","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail","full_name":"Lemeshko, Mikhail"}],"arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"16","month":"10","year":"2018","quality_controlled":"1","publist_id":"8025","article_number":"165301","department":[{"_id":"MiLe"}]},{"type":"journal_article","related_material":{"link":[{"relation":"erratum","url":"http://doi.org/10.1038/s41562-018-0342-3"}]},"scopus_import":"1","publication":"Nature Human Behaviour","ec_funded":1,"date_published":"2018-03-19T00:00:00Z","title":"Partners and rivals in direct reciprocity","has_accepted_license":"1","ddc":["000"],"volume":2,"language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:46:25Z","citation":{"short":"C. Hilbe, K. Chatterjee, M. Nowak, Nature Human Behaviour 2 (2018) 469–477.","mla":"Hilbe, Christian, et al. “Partners and Rivals in Direct Reciprocity.” <i>Nature Human Behaviour</i>, vol. 2, Nature Publishing Group, 2018, pp. 469–477, doi:<a href=\"https://doi.org/10.1038/s41562-018-0320-9\">10.1038/s41562-018-0320-9</a>.","ieee":"C. Hilbe, K. Chatterjee, and M. Nowak, “Partners and rivals in direct reciprocity,” <i>Nature Human Behaviour</i>, vol. 2. Nature Publishing Group, pp. 469–477, 2018.","apa":"Hilbe, C., Chatterjee, K., &#38; Nowak, M. (2018). Partners and rivals in direct reciprocity. <i>Nature Human Behaviour</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41562-018-0320-9\">https://doi.org/10.1038/s41562-018-0320-9</a>","chicago":"Hilbe, Christian, Krishnendu Chatterjee, and Martin Nowak. “Partners and Rivals in Direct Reciprocity.” <i>Nature Human Behaviour</i>. Nature Publishing Group, 2018. <a href=\"https://doi.org/10.1038/s41562-018-0320-9\">https://doi.org/10.1038/s41562-018-0320-9</a>.","ista":"Hilbe C, Chatterjee K, Nowak M. 2018. Partners and rivals in direct reciprocity. Nature Human Behaviour. 2, 469–477.","ama":"Hilbe C, Chatterjee K, Nowak M. Partners and rivals in direct reciprocity. <i>Nature Human Behaviour</i>. 2018;2:469–477. doi:<a href=\"https://doi.org/10.1038/s41562-018-0320-9\">10.1038/s41562-018-0320-9</a>"},"doi":"10.1038/s41562-018-0320-9","abstract":[{"text":"Reciprocity is a major factor in human social life and accounts for a large part of cooperation in our communities. Direct reciprocity arises when repeated interactions occur between the same individuals. The framework of iterated games formalizes this phenomenon. Despite being introduced more than five decades ago, the concept keeps offering beautiful surprises. Recent theoretical research driven by new mathematical tools has proposed a remarkable dichotomy among the crucial strategies: successful individuals either act as partners or as rivals. Rivals strive for unilateral advantages by applying selfish or extortionate strategies. Partners aim to share the payoff for mutual cooperation, but are ready to fight back when being exploited. Which of these behaviours evolves depends on the environment. Whereas small population sizes and a limited number of rounds favour rivalry, partner strategies are selected when populations are large and relationships stable. Only partners allow for evolution of cooperation, while the rivals’ attempt to put themselves first leads to defection. Hilbe et al. synthesize recent theoretical work on zero-determinant and ‘rival’ versus ‘partner’ strategies in social dilemmas. They describe the environments under which these contrasting selfish or cooperative strategies emerge in evolution.","lang":"eng"}],"date_updated":"2025-04-15T06:50:00Z","corr_author":"1","oa":1,"date_created":"2018-12-11T11:46:22Z","publisher":"Nature Publishing Group","day":"19","_id":"419","status":"public","article_processing_charge":"No","department":[{"_id":"KrCh"}],"isi":1,"article_type":"review","year":"2018","quality_controlled":"1","publist_id":"7404","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"03","external_id":{"isi":["000446612000016"]},"author":[{"orcid":"0000-0001-5116-955X","last_name":"Hilbe","full_name":"Hilbe, Christian","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","first_name":"Christian"},{"orcid":"0000-0002-4561-241X","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu"},{"full_name":"Nowak, Martin","first_name":"Martin","last_name":"Nowak"}],"intvolume":"         2","project":[{"call_identifier":"FP7","grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"grant_number":"P 23499-N23","call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S 11407_N23"},{"name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"291734"}],"page":"469–477","publication_status":"published","file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:46:25Z","file_size":598033,"relation":"main_file","file_id":"7052","access_level":"open_access","creator":"dernst","checksum":"571b8cc0ba14e8d5d8b18e439a9835eb","file_name":"2018_NatureHumanBeh_Hilbe.pdf","date_created":"2019-11-19T08:19:51Z"}],"oa_version":"Submitted Version"},{"external_id":{"isi":["000448163900015"]},"author":[{"last_name":"Cucinotta","first_name":"Mara","full_name":"Cucinotta, Mara"},{"last_name":"Manrique","first_name":"Silvia","full_name":"Manrique, Silvia"},{"first_name":"Candela","id":"33A3C818-F248-11E8-B48F-1D18A9856A87","full_name":"Cuesta, Candela","orcid":"0000-0003-1923-2410","last_name":"Cuesta"},{"first_name":"Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","full_name":"Benková, Eva","last_name":"Benková","orcid":"0000-0002-8510-9739"},{"last_name":"Novák","full_name":"Novák, Ondřej","first_name":"Ondřej"},{"last_name":"Colombo","full_name":"Colombo, Lucia","first_name":"Lucia"}],"intvolume":"        69","page":"5169 - 5176","publication_status":"published","file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:46:25Z","date_created":"2018-12-17T10:44:16Z","checksum":"ca3b6711040b1662488aeb3d1f961f13","file_name":"2018_JournalExperimBotany_Cucinotta.pdf","file_size":1292128,"relation":"main_file","creator":"dernst","file_id":"5691","access_level":"open_access"}],"oa_version":"Published Version","department":[{"_id":"EvBe"}],"isi":1,"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2018","quality_controlled":"1","publist_id":"8012","issue":"21","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"07","language":[{"iso":"eng"}],"volume":69,"doi":"10.1093/jxb/ery281","citation":{"mla":"Cucinotta, Mara, et al. “Cup-Shaped Cotyledon1 (CUC1) and CU2 Regulate Cytokinin Homeostasis to Determine Ovule Number in Arabidopsis.” <i>Journal of Experimental Botany</i>, vol. 69, no. 21, Oxford University Press, 2018, pp. 5169–76, doi:<a href=\"https://doi.org/10.1093/jxb/ery281\">10.1093/jxb/ery281</a>.","short":"M. Cucinotta, S. Manrique, C. Cuesta, E. Benková, O. Novák, L. Colombo, Journal of Experimental Botany 69 (2018) 5169–5176.","apa":"Cucinotta, M., Manrique, S., Cuesta, C., Benková, E., Novák, O., &#38; Colombo, L. (2018). Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine ovule number in arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/ery281\">https://doi.org/10.1093/jxb/ery281</a>","chicago":"Cucinotta, Mara, Silvia Manrique, Candela Cuesta, Eva Benková, Ondřej Novák, and Lucia Colombo. “Cup-Shaped Cotyledon1 (CUC1) and CU2 Regulate Cytokinin Homeostasis to Determine Ovule Number in Arabidopsis.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2018. <a href=\"https://doi.org/10.1093/jxb/ery281\">https://doi.org/10.1093/jxb/ery281</a>.","ista":"Cucinotta M, Manrique S, Cuesta C, Benková E, Novák O, Colombo L. 2018. Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine ovule number in arabidopsis. Journal of Experimental Botany. 69(21), 5169–5176.","ama":"Cucinotta M, Manrique S, Cuesta C, Benková E, Novák O, Colombo L. Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine ovule number in arabidopsis. <i>Journal of Experimental Botany</i>. 2018;69(21):5169-5176. doi:<a href=\"https://doi.org/10.1093/jxb/ery281\">10.1093/jxb/ery281</a>","ieee":"M. Cucinotta, S. Manrique, C. Cuesta, E. Benková, O. Novák, and L. Colombo, “Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine ovule number in arabidopsis,” <i>Journal of Experimental Botany</i>, vol. 69, no. 21. Oxford University Press, pp. 5169–5176, 2018."},"file_date_updated":"2020-07-14T12:46:25Z","date_updated":"2023-09-11T12:52:03Z","abstract":[{"lang":"eng","text":"Seeds derive from ovules upon fertilization and therefore the total number of ovules determines the final seed yield, a fundamental trait in crop plants. Among the factors that co-ordinate the process of ovule formation, the transcription factors CUP-SHAPED COTYLEDON 1 (CUC1) and CUC2 and the hormone cytokinin (CK) have a particularly prominent role. Indeed, the absence of both CUC1 and CUC2 causes a severe reduction in ovule number, a phenotype that can be rescued by CK treatment. In this study, we combined CK quantification with an integrative genome-wide target identification approach to select Arabidopsis genes regulated by CUCs that are also involved in CK metabolism. We focused our attention on the functional characterization of UDP-GLUCOSYL TRANSFERASE 85A3 (UGT85A3) and UGT73C1, which are up-regulated in the absence of CUC1 and CUC2 and encode enzymes able to catalyse CK inactivation by O-glucosylation. Our results demonstrate a role for these UGTs as a link between CUCs and CK homeostasis, and highlight the importance of CUCs and CKs in the determination of seed yield."}],"date_created":"2018-12-11T11:44:19Z","oa":1,"_id":"42","day":"26","publisher":"Oxford University Press","article_processing_charge":"No","acknowledgement":"This work was funded by the Ministry of Education, Youth and Sports of the Czech Republic through the National Program of Sustainability (grant no. LO1204).","status":"public","type":"journal_article","scopus_import":"1","publication":"Journal of Experimental Botany","date_published":"2018-07-26T00:00:00Z","has_accepted_license":"1","title":"Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine ovule number in arabidopsis","ddc":["575"]},{"type":"journal_article","scopus_import":"1","publication":"International Journal of Modern Physics B","date_published":"2018-07-10T00:00:00Z","title":"Renormalization of the superfluid density in the two-dimensional BCS-BEC crossover","volume":32,"language":[{"iso":"eng"}],"citation":{"short":"G. Bighin, L. Salasnich, International Journal of Modern Physics B 32 (2018) 1840022.","mla":"Bighin, Giacomo, and Luca Salasnich. “Renormalization of the Superfluid Density in the Two-Dimensional BCS-BEC Crossover.” <i>International Journal of Modern Physics B</i>, vol. 32, no. 17, World Scientific Publishing, 2018, p. 1840022, doi:<a href=\"https://doi.org/10.1142/S0217979218400222\">10.1142/S0217979218400222</a>.","ieee":"G. Bighin and L. Salasnich, “Renormalization of the superfluid density in the two-dimensional BCS-BEC crossover,” <i>International Journal of Modern Physics B</i>, vol. 32, no. 17. World Scientific Publishing, p. 1840022, 2018.","apa":"Bighin, G., &#38; Salasnich, L. (2018). Renormalization of the superfluid density in the two-dimensional BCS-BEC crossover. <i>International Journal of Modern Physics B</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S0217979218400222\">https://doi.org/10.1142/S0217979218400222</a>","chicago":"Bighin, Giacomo, and Luca Salasnich. “Renormalization of the Superfluid Density in the Two-Dimensional BCS-BEC Crossover.” <i>International Journal of Modern Physics B</i>. World Scientific Publishing, 2018. <a href=\"https://doi.org/10.1142/S0217979218400222\">https://doi.org/10.1142/S0217979218400222</a>.","ama":"Bighin G, Salasnich L. Renormalization of the superfluid density in the two-dimensional BCS-BEC crossover. <i>International Journal of Modern Physics B</i>. 2018;32(17):1840022. doi:<a href=\"https://doi.org/10.1142/S0217979218400222\">10.1142/S0217979218400222</a>","ista":"Bighin G, Salasnich L. 2018. Renormalization of the superfluid density in the two-dimensional BCS-BEC crossover. International Journal of Modern Physics B. 32(17), 1840022."},"doi":"10.1142/S0217979218400222","date_updated":"2025-06-04T07:52:34Z","abstract":[{"text":"We analyze the theoretical derivation of the beyond-mean-field equation of state for two-dimensional gas of dilute, ultracold alkali-metal atoms in the Bardeen–Cooper–Schrieffer (BCS) to Bose–Einstein condensate (BEC) crossover. We show that at zero temperature our theory — considering Gaussian fluctuations on top of the mean-field equation of state — is in very good agreement with experimental data. Subsequently, we investigate the superfluid density at finite temperature and its renormalization due to the proliferation of vortex–antivortex pairs. By doing so, we determine the Berezinskii–Kosterlitz–Thouless (BKT) critical temperature — at which the renormalized superfluid density jumps to zero — as a function of the inter-atomic potential strength. We find that the Nelson–Kosterlitz criterion overestimates the BKT temperature with respect to the renormalization group equations, this effect being particularly relevant in the intermediate regime of the crossover.","lang":"eng"}],"date_created":"2018-12-11T11:46:22Z","oa":1,"_id":"420","day":"10","publisher":"World Scientific Publishing","article_processing_charge":"No","status":"public","department":[{"_id":"MiLe"}],"isi":1,"year":"2018","quality_controlled":"1","publist_id":"7402","issue":"17","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"07","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1710.11171"}],"external_id":{"arxiv":["1710.11171"],"isi":["000438217300007"]},"arxiv":1,"author":[{"last_name":"Bighin","orcid":"0000-0001-8823-9777","full_name":"Bighin, Giacomo","first_name":"Giacomo","id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Salasnich","full_name":"Salasnich, Luca","first_name":"Luca"}],"intvolume":"        32","page":"1840022","publication_status":"published","oa_version":"Preprint"},{"department":[{"_id":"EdHa"}],"isi":1,"quality_controlled":"1","publist_id":"7403","year":"2018","month":"02","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","issue":"4","author":[{"last_name":"Dasbiswas","first_name":"Kinjal","full_name":"Dasbiswas, Kinjal"},{"full_name":"Hannezo, Claude-Edouard B","first_name":"Claude-Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo","orcid":"0000-0001-6005-1561"},{"last_name":"Gov","full_name":"Gov, Nir","first_name":"Nir"}],"arxiv":1,"external_id":{"arxiv":["1709.01486"],"isi":["000428016700021"]},"main_file_link":[{"url":"https://arxiv.org/abs/1709.01486","open_access":"1"}],"intvolume":"       114","publication_status":"published","page":"968 - 977","oa_version":"Submitted Version","scopus_import":"1","type":"journal_article","date_published":"2018-02-27T00:00:00Z","publication":"Biophysical Journal","title":"Theory of eppithelial cell shape transitions induced by mechanoactive chemical gradients","citation":{"mla":"Dasbiswas, Kinjal, et al. “Theory of Eppithelial Cell Shape Transitions Induced by Mechanoactive Chemical Gradients.” <i>Biophysical Journal</i>, vol. 114, no. 4, Biophysical Society, 2018, pp. 968–77, doi:<a href=\"https://doi.org/10.1016/j.bpj.2017.12.022\">10.1016/j.bpj.2017.12.022</a>.","short":"K. Dasbiswas, E.B. Hannezo, N. Gov, Biophysical Journal 114 (2018) 968–977.","apa":"Dasbiswas, K., Hannezo, E. B., &#38; Gov, N. (2018). Theory of eppithelial cell shape transitions induced by mechanoactive chemical gradients. <i>Biophysical Journal</i>. Biophysical Society. <a href=\"https://doi.org/10.1016/j.bpj.2017.12.022\">https://doi.org/10.1016/j.bpj.2017.12.022</a>","chicago":"Dasbiswas, Kinjal, Edouard B Hannezo, and Nir Gov. “Theory of Eppithelial Cell Shape Transitions Induced by Mechanoactive Chemical Gradients.” <i>Biophysical Journal</i>. Biophysical Society, 2018. <a href=\"https://doi.org/10.1016/j.bpj.2017.12.022\">https://doi.org/10.1016/j.bpj.2017.12.022</a>.","ama":"Dasbiswas K, Hannezo EB, Gov N. Theory of eppithelial cell shape transitions induced by mechanoactive chemical gradients. <i>Biophysical Journal</i>. 2018;114(4):968-977. doi:<a href=\"https://doi.org/10.1016/j.bpj.2017.12.022\">10.1016/j.bpj.2017.12.022</a>","ista":"Dasbiswas K, Hannezo EB, Gov N. 2018. Theory of eppithelial cell shape transitions induced by mechanoactive chemical gradients. Biophysical Journal. 114(4), 968–977.","ieee":"K. Dasbiswas, E. B. Hannezo, and N. Gov, “Theory of eppithelial cell shape transitions induced by mechanoactive chemical gradients,” <i>Biophysical Journal</i>, vol. 114, no. 4. Biophysical Society, pp. 968–977, 2018."},"doi":"10.1016/j.bpj.2017.12.022","volume":114,"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Cell shape is determined by a balance of intrinsic properties of the cell as well as its mechanochemical environment. Inhomogeneous shape changes underlie many morphogenetic events and involve spatial gradients in active cellular forces induced by complex chemical signaling. Here, we introduce a mechanochemical model based on the notion that cell shape changes may be induced by external diffusible biomolecules that influence cellular contractility (or equivalently, adhesions) in a concentration-dependent manner—and whose spatial profile in turn is affected by cell shape. We map out theoretically the possible interplay between chemical concentration and cellular structure. Besides providing a direct route to spatial gradients in cell shape profiles in tissues, we show that the dependence on cell shape helps create robust mechanochemical gradients."}],"date_updated":"2023-09-19T10:13:55Z","publisher":"Biophysical Society","day":"27","_id":"421","date_created":"2018-12-11T11:46:23Z","oa":1,"status":"public","article_processing_charge":"No"},{"publication":"eLife","ec_funded":1,"date_published":"2018-03-09T00:00:00Z","type":"journal_article","related_material":{"record":[{"status":"public","id":"9840","relation":"research_data"}]},"scopus_import":"1","has_accepted_license":"1","title":"CRISPR-based herd immunity can limit phage epidemics in bacterial populations","ddc":["576"],"abstract":[{"text":"Herd immunity, a process in which resistant individuals limit the spread of a pathogen among susceptible hosts has been extensively studied in eukaryotes. Even though bacteria have evolved multiple immune systems against their phage pathogens, herd immunity in bacteria remains unexplored. Here we experimentally demonstrate that herd immunity arises during phage epidemics in structured and unstructured Escherichia coli populations consisting of differing frequencies of susceptible and resistant cells harboring CRISPR immunity. In addition, we develop a mathematical model that quantifies how herd immunity is affected by spatial population structure, bacterial growth rate, and phage replication rate. Using our model we infer a general epidemiological rule describing the relative speed of an epidemic in partially resistant spatially structured populations. Our experimental and theoretical findings indicate that herd immunity may be important in bacterial communities, allowing for stable coexistence of bacteria and their phages and the maintenance of polymorphism in bacterial immunity.","lang":"eng"}],"date_updated":"2025-03-31T16:00:24Z","language":[{"iso":"eng"}],"volume":7,"citation":{"apa":"Payne, P., Geyrhofer, L., Barton, N. H., &#38; Bollback, J. P. (2018). CRISPR-based herd immunity can limit phage epidemics in bacterial populations. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.32035\">https://doi.org/10.7554/eLife.32035</a>","chicago":"Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “CRISPR-Based Herd Immunity Can Limit Phage Epidemics in Bacterial Populations.” <i>ELife</i>. eLife Sciences Publications, 2018. <a href=\"https://doi.org/10.7554/eLife.32035\">https://doi.org/10.7554/eLife.32035</a>.","ista":"Payne P, Geyrhofer L, Barton NH, Bollback JP. 2018. CRISPR-based herd immunity can limit phage epidemics in bacterial populations. eLife. 7, e32035.","ama":"Payne P, Geyrhofer L, Barton NH, Bollback JP. CRISPR-based herd immunity can limit phage epidemics in bacterial populations. <i>eLife</i>. 2018;7. doi:<a href=\"https://doi.org/10.7554/eLife.32035\">10.7554/eLife.32035</a>","ieee":"P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “CRISPR-based herd immunity can limit phage epidemics in bacterial populations,” <i>eLife</i>, vol. 7. eLife Sciences Publications, 2018.","mla":"Payne, Pavel, et al. “CRISPR-Based Herd Immunity Can Limit Phage Epidemics in Bacterial Populations.” <i>ELife</i>, vol. 7, e32035, eLife Sciences Publications, 2018, doi:<a href=\"https://doi.org/10.7554/eLife.32035\">10.7554/eLife.32035</a>.","short":"P. Payne, L. Geyrhofer, N.H. Barton, J.P. Bollback, ELife 7 (2018)."},"file_date_updated":"2020-07-14T12:46:25Z","doi":"10.7554/eLife.32035","status":"public","acknowledgement":"We are grateful to Remy Chait for his help and assistance with establishing our experimental setups and to Tobias Bergmiller for valuable insights into some specific experimental details. We thank Luciano Marraffini for donating us the pCas9 plasmid used in this study. We also want to express our gratitude to Seth Barribeau, Andrea Betancourt, Călin Guet, Mato Lagator, Tiago Paixão and Maroš Pleška for valuable discussions on the manuscript. Finally, we would like to thank the \r\neditors and reviewers for their helpful comments and suggestions.","article_processing_charge":"No","oa":1,"date_created":"2018-12-11T11:46:23Z","day":"09","publisher":"eLife Sciences Publications","_id":"423","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"isi":1,"article_number":"e32035","department":[{"_id":"NiBa"},{"_id":"JoBo"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"03","year":"2018","quality_controlled":"1","publist_id":"7400","intvolume":"         7","project":[{"grant_number":"648440","call_identifier":"H2020","_id":"2578D616-B435-11E9-9278-68D0E5697425","name":"Selective Barriers to Horizontal Gene Transfer"}],"external_id":{"isi":["000431035800001"]},"author":[{"last_name":"Payne","orcid":"0000-0002-2711-9453","full_name":"Payne, Pavel","first_name":"Pavel","id":"35F78294-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Lukas","full_name":"Geyrhofer, Lukas","last_name":"Geyrhofer"},{"last_name":"Barton","orcid":"0000-0002-8548-5240","full_name":"Barton, Nicholas H","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jonathan P","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","full_name":"Bollback, Jonathan P","last_name":"Bollback","orcid":"0000-0002-4624-4612"}],"file":[{"date_created":"2018-12-17T10:36:07Z","checksum":"447cf6e680bdc3c01062a8737d876569","file_name":"2018_eLife_Payne.pdf","relation":"main_file","file_size":3533881,"creator":"dernst","access_level":"open_access","file_id":"5689","content_type":"application/pdf","date_updated":"2020-07-14T12:46:25Z"}],"oa_version":"Published Version","publication_status":"published"},{"month":"01","issue":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","quality_controlled":"1","publist_id":"7398","year":"2018","article_type":"original","article_number":"5","isi":1,"department":[{"_id":"UlWa"}],"oa_version":"Preprint","publication_status":"published","project":[{"name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"291734"}],"intvolume":"        65","arxiv":1,"author":[{"first_name":"Jiří","full_name":"Matoušek, Jiří","last_name":"Matoušek"},{"last_name":"Sedgwick","full_name":"Sedgwick, Eric","first_name":"Eric"},{"first_name":"Martin","id":"38AC689C-F248-11E8-B48F-1D18A9856A87","full_name":"Tancer, Martin","orcid":"0000-0002-1191-6714","last_name":"Tancer"},{"orcid":"0000-0002-1494-0568","last_name":"Wagner","full_name":"Wagner, Uli","first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87"}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1402.0815"}],"external_id":{"isi":["000425685900006"],"arxiv":["1402.0815"]},"title":"Embeddability in the 3-Sphere is decidable","date_published":"2018-01-01T00:00:00Z","ec_funded":1,"publication":"Journal of the ACM","related_material":{"record":[{"id":"2157","relation":"earlier_version","status":"public"}]},"scopus_import":"1","type":"journal_article","article_processing_charge":"No","status":"public","_id":"425","publisher":"ACM","day":"01","oa":1,"date_created":"2018-12-11T11:46:24Z","date_updated":"2025-06-11T07:59:02Z","abstract":[{"lang":"eng","text":"We show that the following algorithmic problem is decidable: given a 2-dimensional simplicial complex, can it be embedded (topologically, or equivalently, piecewise linearly) in R3? By a known reduction, it suffices to decide the embeddability of a given triangulated 3-manifold X into the 3-sphere S3. The main step, which allows us to simplify X and recurse, is in proving that if X can be embedded in S3, then there is also an embedding in which X has a short meridian, that is, an essential curve in the boundary of X bounding a disk in S3 \\ X with length bounded by a computable function of the number of tetrahedra of X."}],"doi":"10.1145/3078632","citation":{"ieee":"J. Matoušek, E. Sedgwick, M. Tancer, and U. Wagner, “Embeddability in the 3-Sphere is decidable,” <i>Journal of the ACM</i>, vol. 65, no. 1. ACM, 2018.","apa":"Matoušek, J., Sedgwick, E., Tancer, M., &#38; Wagner, U. (2018). Embeddability in the 3-Sphere is decidable. <i>Journal of the ACM</i>. ACM. <a href=\"https://doi.org/10.1145/3078632\">https://doi.org/10.1145/3078632</a>","chicago":"Matoušek, Jiří, Eric Sedgwick, Martin Tancer, and Uli Wagner. “Embeddability in the 3-Sphere Is Decidable.” <i>Journal of the ACM</i>. ACM, 2018. <a href=\"https://doi.org/10.1145/3078632\">https://doi.org/10.1145/3078632</a>.","ama":"Matoušek J, Sedgwick E, Tancer M, Wagner U. Embeddability in the 3-Sphere is decidable. <i>Journal of the ACM</i>. 2018;65(1). doi:<a href=\"https://doi.org/10.1145/3078632\">10.1145/3078632</a>","ista":"Matoušek J, Sedgwick E, Tancer M, Wagner U. 2018. Embeddability in the 3-Sphere is decidable. Journal of the ACM. 65(1), 5.","short":"J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, Journal of the ACM 65 (2018).","mla":"Matoušek, Jiří, et al. “Embeddability in the 3-Sphere Is Decidable.” <i>Journal of the ACM</i>, vol. 65, no. 1, 5, ACM, 2018, doi:<a href=\"https://doi.org/10.1145/3078632\">10.1145/3078632</a>."},"language":[{"iso":"eng"}],"volume":65},{"date_updated":"2024-10-09T20:58:28Z","abstract":[{"lang":"eng","text":"Sperm cells are the most morphologically diverse cells across animal taxa. Within species, sperm and ejaculate traits have been suggested to vary with the male's competitive environment, e.g., level of sperm competition, female mating status and quality, and also with male age, body mass, physiological condition, and resource availability. Most previous studies have based their conclusions on the analysis of only one or a few ejaculates per male without investigating differences among the ejaculates of the same individual. This masks potential ejaculate-specific traits. Here, we provide data on the length, quantity, and viability of sperm ejaculated by wingless males of the ant Cardiocondyla obscurior. Males of this ant species are relatively long-lived and can mate with large numbers of female sexuals throughout their lives. We analyzed all ejaculates across the individuals' lifespan and manipulated the availability of mating partners. Our study shows that both the number and size of sperm cells transferred during copulations differ among individuals and also among ejaculates of the same male. Sperm quality does not decrease with male age, but the variation in sperm number between ejaculates indicates that males need considerable time to replenish their sperm supplies. Producing many ejaculates in a short time appears to be traded-off against male longevity rather than sperm quality."}],"language":[{"iso":"eng"}],"volume":107,"doi":"10.1016/j.jinsphys.2017.12.003","citation":{"short":"S. Metzler, A. Schrempf, J. Heinze, Journal of Insect Physiology 107 (2018) 284–290.","mla":"Metzler, Sina, et al. “Individual- and Ejaculate-Specific Sperm Traits in Ant Males.” <i>Journal of Insect Physiology</i>, vol. 107, Elsevier, 2018, pp. 284–90, doi:<a href=\"https://doi.org/10.1016/j.jinsphys.2017.12.003\">10.1016/j.jinsphys.2017.12.003</a>.","ieee":"S. Metzler, A. Schrempf, and J. Heinze, “Individual- and ejaculate-specific sperm traits in ant males,” <i>Journal of Insect Physiology</i>, vol. 107. Elsevier, pp. 284–290, 2018.","ista":"Metzler S, Schrempf A, Heinze J. 2018. Individual- and ejaculate-specific sperm traits in ant males. Journal of Insect Physiology. 107, 284–290.","ama":"Metzler S, Schrempf A, Heinze J. Individual- and ejaculate-specific sperm traits in ant males. <i>Journal of Insect Physiology</i>. 2018;107:284-290. doi:<a href=\"https://doi.org/10.1016/j.jinsphys.2017.12.003\">10.1016/j.jinsphys.2017.12.003</a>","apa":"Metzler, S., Schrempf, A., &#38; Heinze, J. (2018). Individual- and ejaculate-specific sperm traits in ant males. <i>Journal of Insect Physiology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jinsphys.2017.12.003\">https://doi.org/10.1016/j.jinsphys.2017.12.003</a>","chicago":"Metzler, Sina, Alexandra Schrempf, and Jürgen Heinze. “Individual- and Ejaculate-Specific Sperm Traits in Ant Males.” <i>Journal of Insect Physiology</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.jinsphys.2017.12.003\">https://doi.org/10.1016/j.jinsphys.2017.12.003</a>."},"article_processing_charge":"No","acknowledgement":"Research with C. obscurior from Brazil was permitted by Instituto Brasileiro do Meio Ambiente e dos Recursos Naturais Renováveis, IBAMA (permit no. 20324-1). We thank the German Science Foundation ( DFG ) for funding ( Schr1135/2-1 ), T. Suckert for help with sperm length measurements and A.K. Huylmans for advice concerning graphs. One referee made helpful comments on the manuscript.\r\n","status":"public","date_created":"2018-12-11T11:46:25Z","corr_author":"1","_id":"426","day":"01","publisher":"Elsevier","publication":"Journal of Insect Physiology","date_published":"2018-05-01T00:00:00Z","type":"journal_article","scopus_import":"1","title":"Individual- and ejaculate-specific sperm traits in ant males","intvolume":"       107","external_id":{"isi":["000434751100034"]},"author":[{"first_name":"Sina","id":"48204546-F248-11E8-B48F-1D18A9856A87","full_name":"Metzler, Sina","orcid":"0000-0002-9547-2494","last_name":"Metzler"},{"last_name":"Schrempf","full_name":"Schrempf, Alexandra","first_name":"Alexandra"},{"last_name":"Heinze","first_name":"Jürgen","full_name":"Heinze, Jürgen"}],"oa_version":"None","page":"284-290","publication_status":"published","isi":1,"department":[{"_id":"SyCr"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"05","year":"2018","publist_id":"7397","quality_controlled":"1"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"14","month":"04","year":"2018","quality_controlled":"1","publist_id":"7395","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"isi":1,"department":[{"_id":"JiFr"}],"file":[{"date_created":"2018-12-17T12:30:14Z","file_name":"2018_PNAS_Salanenka.pdf","checksum":"1fcf7223fb8f99559cfa80bd6f24ce44","file_size":1924101,"relation":"main_file","creator":"dernst","file_id":"5700","access_level":"open_access","content_type":"application/pdf","date_updated":"2020-07-14T12:46:26Z"}],"oa_version":"Published Version","page":" 3716 - 3721","publication_status":"published","intvolume":"       115","project":[{"grant_number":"282300","call_identifier":"FP7","name":"Polarity and subcellular dynamics in plants","_id":"25716A02-B435-11E9-9278-68D0E5697425"}],"external_id":{"isi":["000429012500073"]},"author":[{"last_name":"Salanenka","first_name":"Yuliya","id":"46DAAE7E-F248-11E8-B48F-1D18A9856A87","full_name":"Salanenka, Yuliya"},{"full_name":"Verstraeten, Inge","first_name":"Inge","id":"362BF7FE-F248-11E8-B48F-1D18A9856A87","last_name":"Verstraeten","orcid":"0000-0001-7241-2328"},{"full_name":"Löfke, Christian","first_name":"Christian","last_name":"Löfke"},{"last_name":"Tabata","first_name":"Kaori","id":"7DAAEDA4-02D0-11E9-B11A-A5A4D7DFFFD0","full_name":"Tabata, Kaori"},{"last_name":"Naramoto","full_name":"Naramoto, Satoshi","first_name":"Satoshi"},{"first_name":"Matous","id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2","full_name":"Glanc, Matous","last_name":"Glanc","orcid":"0000-0003-0619-7783"},{"first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jirí","orcid":"0000-0002-8302-7596","last_name":"Friml"}],"title":"Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane","has_accepted_license":"1","ddc":["580"],"publication":"Proceedings of the National Academy of Sciences of the United States of America","ec_funded":1,"date_published":"2018-04-03T00:00:00Z","type":"journal_article","scopus_import":"1","status":"public","acknowledgement":"We gratefully acknowledge M. Blázquez (Instituto de Biología Molecular y Celular de Plantas), M. Fendrych, C. Cuesta Moliner (Institute of Science and Technology Austria), M. Vanstraelen, M. Nowack (Center for Plant Systems Biology, Ghent), C. Luschnig (Universitat fur Bodenkultur Wien, Vienna), S. Simon (Central European Institute of Technology, Brno), C. Sommerville (Carnegie Institution for Science), and Y. Gu (Penn State University) for making available the materials used in this study;\r\n...funding from the European Research Council (ERC) under the European Union’s Seventh Framework Programme (FP7/2007-2013)/ERC Grant Agreement 282300.\r\nCC BY NC ND","article_processing_charge":"No","corr_author":"1","date_created":"2018-12-11T11:46:25Z","oa":1,"day":"03","publisher":"National Academy of Sciences","_id":"428","abstract":[{"text":"The plant hormone gibberellic acid (GA) is a crucial regulator of growth and development. The main paradigm of GA signaling puts forward transcriptional regulation via the degradation of DELLA transcriptional repressors. GA has also been shown to regulate tropic responses by modulation of the plasma membrane incidence of PIN auxin transporters by an unclear mechanism. Here we uncovered the cellular and molecular mechanisms by which GA redirects protein trafficking and thus regulates cell surface functionality. Photoconvertible reporters revealed that GA balances the protein traffic between the vacuole degradation route and recycling back to the cell surface. Low GA levels promote vacuolar delivery and degradation of multiple cargos, including PIN proteins, whereas high GA levels promote their recycling to the plasma membrane. This GA effect requires components of the retromer complex, such as Sorting Nexin 1 (SNX1) and its interacting, microtubule (MT)-associated protein, the Cytoplasmic Linker-Associated Protein (CLASP1). Accordingly, GA regulates the subcellular distribution of SNX1 and CLASP1, and the intact MT cytoskeleton is essential for the GA effect on trafficking. This GA cellular action occurs through DELLA proteins that regulate the MT and retromer presumably via their interaction partners Prefoldins (PFDs). Our study identified a branching of the GA signaling pathway at the level of DELLA proteins, which, in parallel to regulating transcription, also target by a nontranscriptional mechanism the retromer complex acting at the intersection of the degradation and recycling trafficking routes. By this mechanism, GA can redirect receptors and transporters to the cell surface, thus coregulating multiple processes, including PIN-dependent auxin fluxes during tropic responses.","lang":"eng"}],"date_updated":"2025-06-03T11:21:29Z","volume":115,"language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:46:26Z","doi":"10.1073/pnas.1721760115","citation":{"short":"Y. Salanenka, I. Verstraeten, C. Löfke, K. Tabata, S. Naramoto, M. Glanc, J. Friml, Proceedings of the National Academy of Sciences of the United States of America 115 (2018) 3716–3721.","mla":"Salanenka, Yuliya, et al. “Gibberellin DELLA Signaling Targets the Retromer Complex to Redirect Protein Trafficking to the Plasma Membrane.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 115, no. 14, National Academy of Sciences, 2018, pp. 3716–21, doi:<a href=\"https://doi.org/10.1073/pnas.1721760115\">10.1073/pnas.1721760115</a>.","ieee":"Y. Salanenka <i>et al.</i>, “Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 115, no. 14. National Academy of Sciences, pp. 3716–3721, 2018.","ista":"Salanenka Y, Verstraeten I, Löfke C, Tabata K, Naramoto S, Glanc M, Friml J. 2018. Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane. Proceedings of the National Academy of Sciences of the United States of America. 115(14), 3716–3721.","ama":"Salanenka Y, Verstraeten I, Löfke C, et al. Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2018;115(14):3716-3721. doi:<a href=\"https://doi.org/10.1073/pnas.1721760115\">10.1073/pnas.1721760115</a>","chicago":"Salanenka, Yuliya, Inge Verstraeten, Christian Löfke, Kaori Tabata, Satoshi Naramoto, Matous Glanc, and Jiří Friml. “Gibberellin DELLA Signaling Targets the Retromer Complex to Redirect Protein Trafficking to the Plasma Membrane.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1721760115\">https://doi.org/10.1073/pnas.1721760115</a>.","apa":"Salanenka, Y., Verstraeten, I., Löfke, C., Tabata, K., Naramoto, S., Glanc, M., &#38; Friml, J. (2018). Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1721760115\">https://doi.org/10.1073/pnas.1721760115</a>"}},{"file":[{"file_name":"2018_PNAS_Rybicki.pdf","checksum":"df7ac544a587c06b75692653b9fabd18","date_created":"2019-04-09T08:02:50Z","file_id":"6258","access_level":"open_access","creator":"dernst","file_size":4070777,"relation":"main_file","date_updated":"2020-07-14T12:46:26Z","content_type":"application/pdf"}],"oa_version":"Submitted Version","page":"10690 - 10695","publication_status":"published","intvolume":"       115","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411"}],"external_id":{"isi":["000447491300057"]},"author":[{"full_name":"Rybicki, Joel","first_name":"Joel","id":"334EFD2E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6432-6646","last_name":"Rybicki"},{"full_name":"Kisdi, Eva","first_name":"Eva","last_name":"Kisdi"},{"last_name":"Anttila","full_name":"Anttila, Jani","first_name":"Jani"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"42","month":"10","year":"2018","publist_id":"8011","quality_controlled":"1","isi":1,"department":[{"_id":"DaAl"}],"acknowledgement":"J.R. and J.V.A. were also supported by the Academy of Finland Grants 1273253 and 267541.","status":"public","article_processing_charge":"No","oa":1,"date_created":"2018-12-11T11:44:19Z","publisher":"National Academy of Sciences","day":"02","_id":"43","abstract":[{"lang":"eng","text":"The initial amount of pathogens required to start an infection within a susceptible host is called the infective dose and is known to vary to a large extent between different pathogen species. We investigate the hypothesis that the differences in infective doses are explained by the mode of action in the underlying mechanism of pathogenesis: Pathogens with locally acting mechanisms tend to have smaller infective doses than pathogens with distantly acting mechanisms. While empirical evidence tends to support the hypothesis, a formal theoretical explanation has been lacking. We give simple analytical models to gain insight into this phenomenon and also investigate a stochastic, spatially explicit, mechanistic within-host model for toxin-dependent bacterial infections. The model shows that pathogens secreting locally acting toxins have smaller infective doses than pathogens secreting diffusive toxins, as hypothesized. While local pathogenetic mechanisms require smaller infective doses, pathogens with distantly acting toxins tend to spread faster and may cause more damage to the host. The proposed model can serve as a basis for the spatially explicit analysis of various virulence factors also in the context of other problems in infection dynamics."}],"date_updated":"2025-06-03T11:16:28Z","publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"volume":115,"language":[{"iso":"eng"}],"doi":"10.1073/pnas.1721061115","file_date_updated":"2020-07-14T12:46:26Z","citation":{"ieee":"J. Rybicki, E. Kisdi, and J. Anttila, “Model of bacterial toxin-dependent pathogenesis explains infective dose,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 115, no. 42. National Academy of Sciences, pp. 10690–10695, 2018.","ama":"Rybicki J, Kisdi E, Anttila J. Model of bacterial toxin-dependent pathogenesis explains infective dose. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2018;115(42):10690-10695. doi:<a href=\"https://doi.org/10.1073/pnas.1721061115\">10.1073/pnas.1721061115</a>","ista":"Rybicki J, Kisdi E, Anttila J. 2018. Model of bacterial toxin-dependent pathogenesis explains infective dose. Proceedings of the National Academy of Sciences of the United States of America. 115(42), 10690–10695.","apa":"Rybicki, J., Kisdi, E., &#38; Anttila, J. (2018). Model of bacterial toxin-dependent pathogenesis explains infective dose. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1721061115\">https://doi.org/10.1073/pnas.1721061115</a>","chicago":"Rybicki, Joel, Eva Kisdi, and Jani Anttila. “Model of Bacterial Toxin-Dependent Pathogenesis Explains Infective Dose.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1721061115\">https://doi.org/10.1073/pnas.1721061115</a>.","short":"J. Rybicki, E. Kisdi, J. Anttila, Proceedings of the National Academy of Sciences of the United States of America 115 (2018) 10690–10695.","mla":"Rybicki, Joel, et al. “Model of Bacterial Toxin-Dependent Pathogenesis Explains Infective Dose.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 115, no. 42, National Academy of Sciences, 2018, pp. 10690–95, doi:<a href=\"https://doi.org/10.1073/pnas.1721061115\">10.1073/pnas.1721061115</a>."},"pubrep_id":"1063","has_accepted_license":"1","title":"Model of bacterial toxin-dependent pathogenesis explains infective dose","ddc":["570","577"],"publication":"Proceedings of the National Academy of Sciences of the United States of America","ec_funded":1,"date_published":"2018-10-02T00:00:00Z","type":"journal_article","scopus_import":"1"},{"intvolume":"       208","author":[{"last_name":"Novembre","first_name":"John","full_name":"Novembre, John"},{"last_name":"Barton","orcid":"0000-0002-8548-5240","full_name":"Barton, Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H"}],"external_id":{"isi":["000429094400005"]},"oa_version":"Published Version","file":[{"date_created":"2018-12-12T10:12:40Z","file_name":"IST-2018-1012-v1+1_2018_Barton_Tread.pdf","checksum":"3d838dc285df394376555b794b6a5ad1","relation":"main_file","file_size":500129,"creator":"system","access_level":"open_access","file_id":"4958","content_type":"application/pdf","date_updated":"2020-07-14T12:46:26Z"}],"publication_status":"published","page":"1351 - 1355","isi":1,"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"department":[{"_id":"NiBa"}],"month":"04","issue":"4","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"7393","quality_controlled":"1","year":"2018","date_updated":"2023-09-19T10:17:30Z","abstract":[{"lang":"eng","text":"In this issue of GENETICS, a new method for detecting natural selection on polygenic traits is developed and applied to sev- eral human examples ( Racimo et al. 2018 ). By de fi nition, many loci contribute to variation in polygenic traits, and a challenge for evolutionary ge neticists has been that these traits can evolve by small, nearly undetectable shifts in allele frequencies across each of many, typically unknown, loci. Recently, a helpful remedy has arisen. Genome-wide associ- ation studies (GWAS) have been illuminating sets of loci that can be interrogated jointly for c hanges in allele frequencies. By aggregating small signal s of change across many such loci, directional natural selection is now in principle detect- able using genetic data, even for highly polygenic traits. This is an exciting arena of progress – with these methods, tests can be made for selection associated with traits, and we can now study selection in what may be its most prevalent mode. The continuing fast pace of GWAS publications suggest there will be many more polygenic tests of selection in the near future, as every new GWAS is an opportunity for an accom- panying test of polygenic selection. However, it is important to be aware of complications th at arise in interpretation, especially given that these studies may easily be misinter- preted both in and outside the evolutionary genetics commu- nity. Here, we provide context for understanding polygenic tests and urge caution regarding how these results are inter- preted and reported upon more broadly."}],"file_date_updated":"2020-07-14T12:46:26Z","doi":"10.1534/genetics.118.300786","citation":{"short":"J. Novembre, N.H. Barton, Genetics 208 (2018) 1351–1355.","mla":"Novembre, John, and Nicholas H. Barton. “Tread Lightly Interpreting Polygenic Tests of Selection.” <i>Genetics</i>, vol. 208, no. 4, Genetics Society of America, 2018, pp. 1351–55, doi:<a href=\"https://doi.org/10.1534/genetics.118.300786\">10.1534/genetics.118.300786</a>.","ieee":"J. Novembre and N. H. Barton, “Tread lightly interpreting polygenic tests of selection,” <i>Genetics</i>, vol. 208, no. 4. Genetics Society of America, pp. 1351–1355, 2018.","apa":"Novembre, J., &#38; Barton, N. H. (2018). Tread lightly interpreting polygenic tests of selection. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.118.300786\">https://doi.org/10.1534/genetics.118.300786</a>","chicago":"Novembre, John, and Nicholas H Barton. “Tread Lightly Interpreting Polygenic Tests of Selection.” <i>Genetics</i>. Genetics Society of America, 2018. <a href=\"https://doi.org/10.1534/genetics.118.300786\">https://doi.org/10.1534/genetics.118.300786</a>.","ama":"Novembre J, Barton NH. Tread lightly interpreting polygenic tests of selection. <i>Genetics</i>. 2018;208(4):1351-1355. doi:<a href=\"https://doi.org/10.1534/genetics.118.300786\">10.1534/genetics.118.300786</a>","ista":"Novembre J, Barton NH. 2018. Tread lightly interpreting polygenic tests of selection. Genetics. 208(4), 1351–1355."},"volume":208,"language":[{"iso":"eng"}],"article_processing_charge":"No","status":"public","_id":"430","publisher":"Genetics Society of America","day":"01","oa":1,"date_created":"2018-12-11T11:46:26Z","date_published":"2018-04-01T00:00:00Z","publication":"Genetics","scopus_import":"1","type":"journal_article","pubrep_id":"1012","ddc":["576"],"title":"Tread lightly interpreting polygenic tests of selection","has_accepted_license":"1"},{"title":"Thrackles: An improved upper bound","related_material":{"record":[{"id":"5857","relation":"later_version","status":"public"}]},"scopus_import":"1","type":"conference","date_published":"2018-01-21T00:00:00Z","publisher":"Springer","day":"21","_id":"433","corr_author":"1","date_created":"2018-12-11T11:46:27Z","oa":1,"status":"public","article_processing_charge":"No","citation":{"mla":"Fulek, Radoslav, and János Pach. <i>Thrackles: An Improved Upper Bound</i>. Vol. 10692, Springer, 2018, pp. 160–66, doi:<a href=\"https://doi.org/10.1007/978-3-319-73915-1_14\">10.1007/978-3-319-73915-1_14</a>.","short":"R. Fulek, J. Pach, in:, Springer, 2018, pp. 160–166.","ista":"Fulek R, Pach J. 2018. Thrackles: An improved upper bound. GD: Graph Drawing and Network Visualization, LNCS, vol. 10692, 160–166.","ama":"Fulek R, Pach J. Thrackles: An improved upper bound. In: Vol 10692. Springer; 2018:160-166. doi:<a href=\"https://doi.org/10.1007/978-3-319-73915-1_14\">10.1007/978-3-319-73915-1_14</a>","apa":"Fulek, R., &#38; Pach, J. (2018). Thrackles: An improved upper bound (Vol. 10692, pp. 160–166). Presented at the GD: Graph Drawing and Network Visualization, Boston, MA, United States: Springer. <a href=\"https://doi.org/10.1007/978-3-319-73915-1_14\">https://doi.org/10.1007/978-3-319-73915-1_14</a>","chicago":"Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound,” 10692:160–66. Springer, 2018. <a href=\"https://doi.org/10.1007/978-3-319-73915-1_14\">https://doi.org/10.1007/978-3-319-73915-1_14</a>.","ieee":"R. Fulek and J. Pach, “Thrackles: An improved upper bound,” presented at the GD: Graph Drawing and Network Visualization, Boston, MA, United States, 2018, vol. 10692, pp. 160–166."},"doi":"10.1007/978-3-319-73915-1_14","language":[{"iso":"eng"}],"volume":10692,"abstract":[{"lang":"eng","text":"A thrackle is a graph drawn in the plane so that every pair of its edges meet exactly once: either at a common end vertex or in a proper crossing. We prove that any thrackle of n vertices has at most 1.3984n edges. Quasi-thrackles are defined similarly, except that every pair of edges that do not share a vertex are allowed to cross an odd number of times. It is also shown that the maximum number of edges of a quasi-thrackle on n vertices is 3/2(n-1), and that this bound is best possible for infinitely many values of n."}],"date_updated":"2026-04-16T09:48:11Z","quality_controlled":"1","publist_id":"7390","year":"2018","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","alternative_title":["LNCS"],"department":[{"_id":"UlWa"}],"conference":{"name":"GD: Graph Drawing and Network Visualization","start_date":"201-09-25","location":"Boston, MA, United States","end_date":"2017-09-27"},"publication_status":"published","page":"160 - 166","oa_version":"Submitted Version","author":[{"orcid":"0000-0001-8485-1774","last_name":"Fulek","full_name":"Fulek, Radoslav","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","first_name":"Radoslav"},{"full_name":"Pach, János","first_name":"János","last_name":"Pach"}],"arxiv":1,"external_id":{"arxiv":["1708.08037"]},"main_file_link":[{"url":"https://arxiv.org/abs/1708.08037","open_access":"1"}],"intvolume":"     10692"},{"type":"journal_article","scopus_import":"1","related_material":{"record":[{"id":"1205","relation":"earlier_version","status":"public"}]},"publication":"IEEE Transactions on Intelligent Transportation Systems","date_published":"2018-01-01T00:00:00Z","title":"Safety-assured model-driven design of the multifunction vehicle bus controller","language":[{"iso":"eng"}],"volume":19,"doi":"10.1109/TITS.2017.2778077","citation":{"mla":"Jiang, Yu, et al. “Safety-Assured Model-Driven Design of the Multifunction Vehicle Bus Controller.” <i>IEEE Transactions on Intelligent Transportation Systems</i>, vol. 19, no. 10, IEEE, 2018, pp. 3320–33, doi:<a href=\"https://doi.org/10.1109/TITS.2017.2778077\">10.1109/TITS.2017.2778077</a>.","short":"Y. Jiang, H. Liu, H. Song, H. Kong, R. Wang, Y. Guan, L. Sha, IEEE Transactions on Intelligent Transportation Systems 19 (2018) 3320–3333.","chicago":"Jiang, Yu, Han Liu, Huobing Song, Hui Kong, Rui Wang, Yong Guan, and Lui Sha. “Safety-Assured Model-Driven Design of the Multifunction Vehicle Bus Controller.” <i>IEEE Transactions on Intelligent Transportation Systems</i>. IEEE, 2018. <a href=\"https://doi.org/10.1109/TITS.2017.2778077\">https://doi.org/10.1109/TITS.2017.2778077</a>.","apa":"Jiang, Y., Liu, H., Song, H., Kong, H., Wang, R., Guan, Y., &#38; Sha, L. (2018). Safety-assured model-driven design of the multifunction vehicle bus controller. <i>IEEE Transactions on Intelligent Transportation Systems</i>. IEEE. <a href=\"https://doi.org/10.1109/TITS.2017.2778077\">https://doi.org/10.1109/TITS.2017.2778077</a>","ista":"Jiang Y, Liu H, Song H, Kong H, Wang R, Guan Y, Sha L. 2018. Safety-assured model-driven design of the multifunction vehicle bus controller. IEEE Transactions on Intelligent Transportation Systems. 19(10), 3320–3333.","ama":"Jiang Y, Liu H, Song H, et al. Safety-assured model-driven design of the multifunction vehicle bus controller. <i>IEEE Transactions on Intelligent Transportation Systems</i>. 2018;19(10):3320-3333. doi:<a href=\"https://doi.org/10.1109/TITS.2017.2778077\">10.1109/TITS.2017.2778077</a>","ieee":"Y. Jiang <i>et al.</i>, “Safety-assured model-driven design of the multifunction vehicle bus controller,” <i>IEEE Transactions on Intelligent Transportation Systems</i>, vol. 19, no. 10. IEEE, pp. 3320–3333, 2018."},"abstract":[{"lang":"eng","text":"In this paper, we present a formal model-driven design approach to establish a safety-assured implementation of multifunction vehicle bus controller (MVBC), which controls the data transmission among the devices of the vehicle. First, the generic models and safety requirements described in International Electrotechnical Commission Standard 61375 are formalized as time automata and timed computation tree logic formulas, respectively. With model checking tool Uppaal, we verify whether or not the constructed timed automata satisfy the formulas and several logic inconsistencies in the original standard are detected and corrected. Then, we apply the code generation tool Times to generate C code from the verified model, which is later synthesized into a real MVBC chip, with some handwriting glue code. Furthermore, the runtime verification tool RMOR is applied on the integrated code, to verify some safety requirements that cannot be formalized on the timed automata. For evaluation, we compare the proposed approach with existing MVBC design methods, such as BeagleBone, Galsblock, and Simulink. Experiments show that more ambiguousness or bugs in the standard are detected during Uppaal verification, and the generated code of Times outperforms the C code generated by others in terms of the synthesized binary code size. The errors in the standard have been confirmed and the resulting MVBC has been deployed in the real train communication network."}],"date_updated":"2025-09-22T09:39:54Z","date_created":"2018-12-11T11:46:27Z","day":"01","publisher":"IEEE","_id":"434","status":"public","article_processing_charge":"No","department":[{"_id":"ToHe"}],"isi":1,"year":"2018","quality_controlled":"1","publist_id":"7389","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","issue":"10","month":"01","external_id":{"isi":["000446651100020"]},"author":[{"last_name":"Jiang","full_name":"Jiang, Yu","first_name":"Yu"},{"first_name":"Han","full_name":"Liu, Han","last_name":"Liu"},{"last_name":"Song","full_name":"Song, Huobing","first_name":"Huobing"},{"orcid":"0000-0002-3066-6941","last_name":"Kong","full_name":"Kong, Hui","id":"3BDE25AA-F248-11E8-B48F-1D18A9856A87","first_name":"Hui"},{"last_name":"Wang","first_name":"Rui","full_name":"Wang, Rui"},{"last_name":"Guan","full_name":"Guan, Yong","first_name":"Yong"},{"first_name":"Lui","full_name":"Sha, Lui","last_name":"Sha"}],"intvolume":"        19","page":"3320 - 3333","publication_status":"published","oa_version":"None"},{"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","issue":"10","month":"10","year":"2018","quality_controlled":"1","publist_id":"8037","isi":1,"department":[{"_id":"VlKo"}],"oa_version":"Preprint","page":"269 - 304","publication_status":"published","intvolume":"       141","external_id":{"arxiv":["1405.7828"],"isi":["000446809500022"]},"main_file_link":[{"url":"https://arxiv.org/abs/1405.7828","open_access":"1"}],"author":[{"last_name":"Kolmogorov","full_name":"Kolmogorov, Vladimir","first_name":"Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Rolinek","full_name":"Rolinek, Michal","id":"3CB3BC06-F248-11E8-B48F-1D18A9856A87","first_name":"Michal"}],"arxiv":1,"title":"Superconcentrators of density 25.3","publication":"Ars Combinatoria","date_published":"2018-10-01T00:00:00Z","type":"journal_article","scopus_import":"1","status":"public","article_processing_charge":"No","oa":1,"date_created":"2018-12-11T11:44:11Z","publisher":"Charles Babbage Research Centre","day":"01","_id":"18","abstract":[{"text":"An N-superconcentrator is a directed, acyclic graph with N input nodes and N output nodes such that every subset of the inputs and every subset of the outputs of same cardinality can be connected by node-disjoint paths. It is known that linear-size and bounded-degree superconcentrators exist. We prove the existence of such superconcentrators with asymptotic density 25.3 (where the density is the number of edges divided by N). The previously best known densities were 28 [12] and 27.4136 [17].","lang":"eng"}],"date_updated":"2023-09-19T14:46:18Z","publication_identifier":{"issn":["0381-7032"]},"volume":141,"language":[{"iso":"eng"}],"citation":{"mla":"Kolmogorov, Vladimir, and Michal Rolinek. “Superconcentrators of Density 25.3.” <i>Ars Combinatoria</i>, vol. 141, no. 10, Charles Babbage Research Centre, 2018, pp. 269–304.","short":"V. Kolmogorov, M. Rolinek, Ars Combinatoria 141 (2018) 269–304.","apa":"Kolmogorov, V., &#38; Rolinek, M. (2018). Superconcentrators of density 25.3. <i>Ars Combinatoria</i>. Charles Babbage Research Centre.","chicago":"Kolmogorov, Vladimir, and Michal Rolinek. “Superconcentrators of Density 25.3.” <i>Ars Combinatoria</i>. Charles Babbage Research Centre, 2018.","ama":"Kolmogorov V, Rolinek M. Superconcentrators of density 25.3. <i>Ars Combinatoria</i>. 2018;141(10):269-304.","ista":"Kolmogorov V, Rolinek M. 2018. Superconcentrators of density 25.3. Ars Combinatoria. 141(10), 269–304.","ieee":"V. Kolmogorov and M. Rolinek, “Superconcentrators of density 25.3,” <i>Ars Combinatoria</i>, vol. 141, no. 10. Charles Babbage Research Centre, pp. 269–304, 2018."}},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nd/4.0/legalcode","image":"/image/cc_by_nd.png","name":"Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)","short":"CC BY-ND (4.0)"},"article_type":"original","department":[{"_id":"RoSe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"07","year":"2018","publist_id":"7741","quality_controlled":"1","intvolume":"         5","project":[{"name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"694227"},{"call_identifier":"FWF","grant_number":"P27533_N27","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","_id":"25C878CE-B435-11E9-9278-68D0E5697425"}],"external_id":{"arxiv":["1705.10676"]},"author":[{"full_name":"Lewi, Mathieu","first_name":"Mathieu","last_name":"Lewi"},{"full_name":"Lieb, Élliott","first_name":"Élliott","last_name":"Lieb"},{"last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"}],"arxiv":1,"file":[{"file_name":"2018_JournaldeLecoleMath_Lewi.pdf","checksum":"1ba7cccdf3900f42c4f715ae75d6813c","date_created":"2018-12-17T16:38:18Z","relation":"main_file","file_size":843938,"file_id":"5726","access_level":"open_access","creator":"dernst","content_type":"application/pdf","date_updated":"2020-07-14T12:45:16Z"}],"oa_version":"Published Version","page":"79 - 116","publication_status":"published","publication":"Journal de l'Ecole Polytechnique - Mathematiques","ec_funded":1,"date_published":"2018-07-01T00:00:00Z","type":"journal_article","scopus_import":"1","title":"Statistical mechanics of the uniform electron gas","has_accepted_license":"1","ddc":["510"],"abstract":[{"text":"In this paper we define and study the classical Uniform Electron Gas (UEG), a system of infinitely many electrons whose density is constant everywhere in space. The UEG is defined differently from Jellium, which has a positive constant background but no constraint on the density. We prove that the UEG arises in Density Functional Theory in the limit of a slowly varying density, minimizing the indirect Coulomb energy. We also construct the quantum UEG and compare it to the classical UEG at low density.","lang":"eng"}],"date_updated":"2025-04-14T07:26:59Z","publication_identifier":{"eissn":["2270-518X"],"issn":["2429-7100"]},"language":[{"iso":"eng"}],"volume":5,"doi":"10.5802/jep.64","citation":{"ieee":"M. Lewi, É. Lieb, and R. Seiringer, “Statistical mechanics of the uniform electron gas,” <i>Journal de l’Ecole Polytechnique - Mathematiques</i>, vol. 5. Ecole Polytechnique, pp. 79–116, 2018.","chicago":"Lewi, Mathieu, Élliott Lieb, and Robert Seiringer. “Statistical Mechanics of the Uniform Electron Gas.” <i>Journal de l’Ecole Polytechnique - Mathematiques</i>. Ecole Polytechnique, 2018. <a href=\"https://doi.org/10.5802/jep.64\">https://doi.org/10.5802/jep.64</a>.","apa":"Lewi, M., Lieb, É., &#38; Seiringer, R. (2018). Statistical mechanics of the uniform electron gas. <i>Journal de l’Ecole Polytechnique - Mathematiques</i>. Ecole Polytechnique. <a href=\"https://doi.org/10.5802/jep.64\">https://doi.org/10.5802/jep.64</a>","ista":"Lewi M, Lieb É, Seiringer R. 2018. Statistical mechanics of the uniform electron gas. Journal de l’Ecole Polytechnique - Mathematiques. 5, 79–116.","ama":"Lewi M, Lieb É, Seiringer R. Statistical mechanics of the uniform electron gas. <i>Journal de l’Ecole Polytechnique - Mathematiques</i>. 2018;5:79-116. doi:<a href=\"https://doi.org/10.5802/jep.64\">10.5802/jep.64</a>","short":"M. Lewi, É. Lieb, R. Seiringer, Journal de l’Ecole Polytechnique - Mathematiques 5 (2018) 79–116.","mla":"Lewi, Mathieu, et al. “Statistical Mechanics of the Uniform Electron Gas.” <i>Journal de l’Ecole Polytechnique - Mathematiques</i>, vol. 5, Ecole Polytechnique, 2018, pp. 79–116, doi:<a href=\"https://doi.org/10.5802/jep.64\">10.5802/jep.64</a>."},"file_date_updated":"2020-07-14T12:45:16Z","status":"public","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European\r\nUnion’s Horizon 2020 research and innovation programme (grant agreement 694227 for R.S. and MDFT 725528 for M.L.). Financial support by the Austrian Science Fund (FWF), project No P 27533-N27 (R.S.) and by the US National Science Foundation, grant No PHY12-1265118 (E.H.L.) are gratefully acknowledged.","article_processing_charge":"No","oa":1,"date_created":"2018-12-11T11:45:03Z","day":"01","publisher":"Ecole Polytechnique","_id":"180"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04","year":"2018","publist_id":"7739","quality_controlled":"1","conference":{"end_date":"2018-04-13","start_date":"2018-04-11","location":"Porto, Portugal","name":"HSCC: Hybrid Systems - Computation and Control"},"isi":1,"department":[{"_id":"ToHe"}],"alternative_title":["HSCC Proceedings"],"file":[{"creator":"dernst","file_id":"7833","access_level":"open_access","file_size":5900421,"relation":"main_file","date_created":"2020-05-14T12:18:29Z","file_name":"2018_HSCC_Bakhirkin.pdf","checksum":"81eabc96430e84336ea88310ac0a1ad0","date_updated":"2020-07-14T12:45:17Z","content_type":"application/pdf"}],"oa_version":"Submitted Version","page":"177 - 186","publication_status":"published","project":[{"grant_number":"S 11407_N23","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering"}],"external_id":{"isi":["000474781600020"]},"author":[{"last_name":"Bakhirkin","first_name":"Alexey","full_name":"Bakhirkin, Alexey"},{"last_name":"Ferrere","orcid":"0000-0001-5199-3143","first_name":"Thomas","id":"40960E6E-F248-11E8-B48F-1D18A9856A87","full_name":"Ferrere, Thomas"},{"first_name":"Oded","full_name":"Maler, Oded","last_name":"Maler"}],"has_accepted_license":"1","title":"Efficient parametric identification for STL","ddc":["000"],"publication":"Proceedings of the 21st International Conference on Hybrid Systems","date_published":"2018-04-11T00:00:00Z","type":"conference","scopus_import":"1","status":"public","article_processing_charge":"No","oa":1,"date_created":"2018-12-11T11:45:04Z","day":"11","publisher":"ACM","_id":"182","abstract":[{"text":"We describe a new algorithm for the parametric identification problem for signal temporal logic (STL), stated as follows. Given a densetime real-valued signal w and a parameterized temporal logic formula φ, compute the subset of the parameter space that renders the formula satisfied by the signal. Unlike previous solutions, which were based on search in the parameter space or quantifier elimination, our procedure works recursively on φ and computes the evolution over time of the set of valid parameter assignments. This procedure is similar to that of monitoring or computing the robustness of φ relative to w. Our implementation and experiments demonstrate that this approach can work well in practice.","lang":"eng"}],"date_updated":"2025-07-10T11:51:21Z","publication_identifier":{"isbn":["978-1-4503-5642-8 "]},"language":[{"iso":"eng"}],"doi":"10.1145/3178126.3178132","citation":{"ista":"Bakhirkin A, Ferrere T, Maler O. 2018. Efficient parametric identification for STL. Proceedings of the 21st International Conference on Hybrid Systems. HSCC: Hybrid Systems - Computation and Control, HSCC Proceedings, , 177–186.","ama":"Bakhirkin A, Ferrere T, Maler O. Efficient parametric identification for STL. In: <i>Proceedings of the 21st International Conference on Hybrid Systems</i>. ACM; 2018:177-186. doi:<a href=\"https://doi.org/10.1145/3178126.3178132\">10.1145/3178126.3178132</a>","apa":"Bakhirkin, A., Ferrere, T., &#38; Maler, O. (2018). Efficient parametric identification for STL. In <i>Proceedings of the 21st International Conference on Hybrid Systems</i> (pp. 177–186). Porto, Portugal: ACM. <a href=\"https://doi.org/10.1145/3178126.3178132\">https://doi.org/10.1145/3178126.3178132</a>","chicago":"Bakhirkin, Alexey, Thomas Ferrere, and Oded Maler. “Efficient Parametric Identification for STL.” In <i>Proceedings of the 21st International Conference on Hybrid Systems</i>, 177–86. ACM, 2018. <a href=\"https://doi.org/10.1145/3178126.3178132\">https://doi.org/10.1145/3178126.3178132</a>.","ieee":"A. Bakhirkin, T. Ferrere, and O. Maler, “Efficient parametric identification for STL,” in <i>Proceedings of the 21st International Conference on Hybrid Systems</i>, Porto, Portugal, 2018, pp. 177–186.","mla":"Bakhirkin, Alexey, et al. “Efficient Parametric Identification for STL.” <i>Proceedings of the 21st International Conference on Hybrid Systems</i>, ACM, 2018, pp. 177–86, doi:<a href=\"https://doi.org/10.1145/3178126.3178132\">10.1145/3178126.3178132</a>.","short":"A. Bakhirkin, T. Ferrere, O. Maler, in:, Proceedings of the 21st International Conference on Hybrid Systems, ACM, 2018, pp. 177–186."},"file_date_updated":"2020-07-14T12:45:17Z"},{"date_created":"2018-12-11T11:45:04Z","publisher":"Association for Computing Machinery","day":"11","_id":"183","status":"public","acknowledgement":"This work was partially supported by the Austrian Science Fund (FWF) under grants S11402-N23 and S11405-N23 (RiSE/SHiNE), the CPS/IoT project (HRSM), the EU ICT COST Action IC1402 on Run-time Verification beyond Monitoring (ARVI), the AMASS project (ECSEL 692474), and the ENABLE-S3 project (ECSEL 692455). The CPS/IoT project receives support from the Austrian government through the Federal Ministry of Science, Research and Economy (BMWFW) in the funding program Hochschulraum-Strukturmittel (HRSM) 2016. The ECSEL Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation programme and Austria, Denmark, Germany, Finland, Czech Republic, Italy, Spain, Portugal, Poland, Ireland, Belgium, France, Netherlands, United Kingdom, Slovakia, Norway.","article_processing_charge":"No","language":[{"iso":"eng"}],"doi":"10.1145/3178126.3178131","citation":{"short":"E. Bartocci, T. Ferrere, N. Manjunath, D. Nickovic, in:, Association for Computing Machinery, 2018, pp. 197–206.","mla":"Bartocci, Ezio, et al. <i>Localizing Faults in Simulink/Stateflow Models with STL</i>. Association for Computing Machinery, 2018, pp. 197–206, doi:<a href=\"https://doi.org/10.1145/3178126.3178131\">10.1145/3178126.3178131</a>.","ieee":"E. Bartocci, T. Ferrere, N. Manjunath, and D. Nickovic, “Localizing faults in simulink/stateflow models with STL,” presented at the HSCC: Hybrid Systems - Computation and Control, Porto, Portugal, 2018, pp. 197–206.","ista":"Bartocci E, Ferrere T, Manjunath N, Nickovic D. 2018. Localizing faults in simulink/stateflow models with STL. HSCC: Hybrid Systems - Computation and Control, HSCC Proceedings, , 197–206.","ama":"Bartocci E, Ferrere T, Manjunath N, Nickovic D. Localizing faults in simulink/stateflow models with STL. In: Association for Computing Machinery; 2018:197-206. doi:<a href=\"https://doi.org/10.1145/3178126.3178131\">10.1145/3178126.3178131</a>","apa":"Bartocci, E., Ferrere, T., Manjunath, N., &#38; Nickovic, D. (2018). Localizing faults in simulink/stateflow models with STL (pp. 197–206). Presented at the HSCC: Hybrid Systems - Computation and Control, Porto, Portugal: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3178126.3178131\">https://doi.org/10.1145/3178126.3178131</a>","chicago":"Bartocci, Ezio, Thomas Ferrere, Niveditha Manjunath, and Dejan Nickovic. “Localizing Faults in Simulink/Stateflow Models with STL,” 197–206. Association for Computing Machinery, 2018. <a href=\"https://doi.org/10.1145/3178126.3178131\">https://doi.org/10.1145/3178126.3178131</a>."},"abstract":[{"lang":"eng","text":"Fault-localization is considered to be a very tedious and time-consuming activity in the design of complex Cyber-Physical Systems (CPS). This laborious task essentially requires expert knowledge of the system in order to discover the cause of the fault. In this context, we propose a new procedure that AIDS designers in debugging Simulink/Stateflow hybrid system models, guided by Signal Temporal Logic (STL) specifications. The proposed method relies on three main ingredients: (1) a monitoring and a trace diagnostics procedure that checks whether a tested behavior satisfies or violates an STL specification, localizes time segments and interfaces variables contributing to the property violations; (2) a slicing procedure that maps these observable behavior segments to the internal states and transitions of the Simulink model; and (3) a spectrum-based fault-localization method that combines the previous analysis from multiple tests to identify the internal states and/or transitions that are the most likely to explain the fault. We demonstrate the applicability of our approach on two Simulink models from the automotive and the avionics domain."}],"date_updated":"2025-07-10T11:51:22Z","title":"Localizing faults in simulink/stateflow models with STL","type":"conference","scopus_import":"1","date_published":"2018-04-11T00:00:00Z","page":"197 - 206","publication_status":"published","oa_version":"None","external_id":{"isi":["000474781600022"]},"author":[{"full_name":"Bartocci, Ezio","first_name":"Ezio","last_name":"Bartocci"},{"full_name":"Ferrere, Thomas","first_name":"Thomas","id":"40960E6E-F248-11E8-B48F-1D18A9856A87","last_name":"Ferrere","orcid":"0000-0001-5199-3143"},{"first_name":"Niveditha","full_name":"Manjunath, Niveditha","last_name":"Manjunath"},{"last_name":"Nickovic","full_name":"Nickovic, Dejan","first_name":"Dejan"}],"project":[{"call_identifier":"FWF","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425"}],"year":"2018","quality_controlled":"1","publist_id":"7738","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04","department":[{"_id":"ToHe"}],"alternative_title":["HSCC Proceedings"],"conference":{"end_date":"2018-04-13","start_date":"2018-04-11","location":"Porto, Portugal","name":"HSCC: Hybrid Systems - Computation and Control"},"isi":1},{"oa_version":"Published Version","file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:45:18Z","checksum":"d12bdd60f04a57307867704b5f930afd","file_name":"2018_LIPIcs_Goaoc.pdf","date_created":"2018-12-17T16:35:02Z","file_size":718414,"relation":"main_file","access_level":"open_access","file_id":"5725","creator":"dernst"}],"publication_status":"published","page":"41:1 - 41:16","intvolume":"        99","author":[{"full_name":"Goaoc, Xavier","first_name":"Xavier","last_name":"Goaoc"},{"full_name":"Paták, Pavel","first_name":"Pavel","last_name":"Paták"},{"first_name":"Zuzana","id":"48B57058-F248-11E8-B48F-1D18A9856A87","full_name":"Patakova, Zuzana","orcid":"0000-0002-3975-1683","last_name":"Patakova"},{"last_name":"Tancer","orcid":"0000-0002-1191-6714","full_name":"Tancer, Martin","first_name":"Martin","id":"38AC689C-F248-11E8-B48F-1D18A9856A87"},{"id":"36690CA2-F248-11E8-B48F-1D18A9856A87","first_name":"Uli","full_name":"Wagner, Uli","orcid":"0000-0002-1494-0568","last_name":"Wagner"}],"month":"06","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"7736","quality_controlled":"1","year":"2018","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"conference":{"end_date":"2018-06-14","name":"SoCG: Symposium on Computational Geometry","location":"Budapest, Hungary","start_date":"2018-06-11"},"alternative_title":["Leibniz International Proceedings in Information, LIPIcs"],"department":[{"_id":"UlWa"}],"status":"public","acknowledgement":"Partially supported by the project EMBEDS II (CZ: 7AMB17FR029, FR: 38087RM) of Czech-French collaboration.","_id":"184","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","day":"11","oa":1,"date_created":"2018-12-11T11:45:04Z","date_updated":"2025-06-04T07:49:02Z","abstract":[{"text":"We prove that for every d ≥ 2, deciding if a pure, d-dimensional, simplicial complex is shellable is NP-hard, hence NP-complete. This resolves a question raised, e.g., by Danaraj and Klee in 1978. Our reduction also yields that for every d ≥ 2 and k ≥ 0, deciding if a pure, d-dimensional, simplicial complex is k-decomposable is NP-hard. For d ≥ 3, both problems remain NP-hard when restricted to contractible pure d-dimensional complexes.","lang":"eng"}],"doi":"10.4230/LIPIcs.SoCG.2018.41","file_date_updated":"2020-07-14T12:45:18Z","citation":{"short":"X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018, p. 41:1-41:16.","mla":"Goaoc, Xavier, et al. <i>Shellability Is NP-Complete</i>. Vol. 99, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018, p. 41:1-41:16, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2018.41\">10.4230/LIPIcs.SoCG.2018.41</a>.","ieee":"X. Goaoc, P. Paták, Z. Patakova, M. Tancer, and U. Wagner, “Shellability is NP-complete,” presented at the SoCG: Symposium on Computational Geometry, Budapest, Hungary, 2018, vol. 99, p. 41:1-41:16.","ama":"Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. Shellability is NP-complete. In: Vol 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018:41:1-41:16. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2018.41\">10.4230/LIPIcs.SoCG.2018.41</a>","ista":"Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. 2018. Shellability is NP-complete. SoCG: Symposium on Computational Geometry, Leibniz International Proceedings in Information, LIPIcs, vol. 99, 41:1-41:16.","apa":"Goaoc, X., Paták, P., Patakova, Z., Tancer, M., &#38; Wagner, U. (2018). Shellability is NP-complete (Vol. 99, p. 41:1-41:16). Presented at the SoCG: Symposium on Computational Geometry, Budapest, Hungary: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2018.41\">https://doi.org/10.4230/LIPIcs.SoCG.2018.41</a>","chicago":"Goaoc, Xavier, Pavel Paták, Zuzana Patakova, Martin Tancer, and Uli Wagner. “Shellability Is NP-Complete,” 99:41:1-41:16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2018.41\">https://doi.org/10.4230/LIPIcs.SoCG.2018.41</a>."},"language":[{"iso":"eng"}],"volume":99,"ddc":["516","000"],"has_accepted_license":"1","title":"Shellability is NP-complete","date_published":"2018-06-11T00:00:00Z","related_material":{"record":[{"status":"public","relation":"later_version","id":"7108"}]},"scopus_import":1,"type":"conference"},{"ddc":["570"],"has_accepted_license":"1","title":"On the relation between filament density, force generation, and protrusion rate in mesenchymal cell motility","das_tickbox":"1","date_published":"2018-11-01T00:00:00Z","publication":"Molecular Biology of the Cell","scopus_import":"1","type":"journal_article","article_processing_charge":"No","status":"public","_id":"5992","day":"01","publisher":"American Society for Cell Biology","oa":1,"date_created":"2019-02-14T12:25:47Z","publication_identifier":{"eissn":["1939-4586"]},"date_updated":"2026-07-06T12:25:34Z","abstract":[{"text":"Lamellipodia are flat membrane protrusions formed during mesenchymal motion. Polymerization at the leading edge assembles the actin filament network and generates protrusion force. How this force is supported by the network and how the assembly rate is shared between protrusion and network retrograde flow determines the protrusion rate. We use mathematical modeling to understand experiments changing the F-actin density in lamellipodia of B16-F1 melanoma cells by modulation of Arp2/3 complex activity or knockout of the formins FMNL2 and FMNL3. Cells respond to a reduction of density with a decrease of protrusion velocity, an increase in the ratio of force to filament number, but constant network assembly rate. The relation between protrusion force and tension gradient in the F-actin network and the density dependency of friction, elasticity, and viscosity of the network explain the experimental observations. The formins act as filament nucleators and elongators with differential rates. Modulation of their activity suggests an effect on network assembly rate. Contrary to these expectations, the effect of changes in elongator composition is much weaker than the consequences of the density change. We conclude that the force acting on the leading edge membrane is the force required to drive F-actin network retrograde flow.","lang":"eng"}],"file_date_updated":"2020-07-14T12:47:15Z","doi":"10.1091/mbc.e18-02-0082","citation":{"mla":"Dolati, Setareh, et al. “On the Relation between Filament Density, Force Generation, and Protrusion Rate in Mesenchymal Cell Motility.” <i>Molecular Biology of the Cell</i>, vol. 29, no. 22, American Society for Cell Biology, 2018, pp. 2674–86, doi:<a href=\"https://doi.org/10.1091/mbc.e18-02-0082\">10.1091/mbc.e18-02-0082</a>.","short":"S. Dolati, F. Kage, J. Mueller, M. Müsken, M. Kirchner, G. Dittmar, M.K. Sixt, K. Rottner, M. Falcke, Molecular Biology of the Cell 29 (2018) 2674–2686.","chicago":"Dolati, Setareh, Frieda Kage, Jan Mueller, Mathias Müsken, Marieluise Kirchner, Gunnar Dittmar, Michael K Sixt, Klemens Rottner, and Martin Falcke. “On the Relation between Filament Density, Force Generation, and Protrusion Rate in Mesenchymal Cell Motility.” <i>Molecular Biology of the Cell</i>. American Society for Cell Biology, 2018. <a href=\"https://doi.org/10.1091/mbc.e18-02-0082\">https://doi.org/10.1091/mbc.e18-02-0082</a>.","apa":"Dolati, S., Kage, F., Mueller, J., Müsken, M., Kirchner, M., Dittmar, G., … Falcke, M. (2018). On the relation between filament density, force generation, and protrusion rate in mesenchymal cell motility. <i>Molecular Biology of the Cell</i>. American Society for Cell Biology. <a href=\"https://doi.org/10.1091/mbc.e18-02-0082\">https://doi.org/10.1091/mbc.e18-02-0082</a>","ama":"Dolati S, Kage F, Mueller J, et al. On the relation between filament density, force generation, and protrusion rate in mesenchymal cell motility. <i>Molecular Biology of the Cell</i>. 2018;29(22):2674-2686. doi:<a href=\"https://doi.org/10.1091/mbc.e18-02-0082\">10.1091/mbc.e18-02-0082</a>","ista":"Dolati S, Kage F, Mueller J, Müsken M, Kirchner M, Dittmar G, Sixt MK, Rottner K, Falcke M. 2018. On the relation between filament density, force generation, and protrusion rate in mesenchymal cell motility. Molecular Biology of the Cell. 29(22), 2674–2686.","ieee":"S. Dolati <i>et al.</i>, “On the relation between filament density, force generation, and protrusion rate in mesenchymal cell motility,” <i>Molecular Biology of the Cell</i>, vol. 29, no. 22. American Society for Cell Biology, pp. 2674–2686, 2018."},"volume":29,"language":[{"iso":"eng"}],"month":"11","issue":"22","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","year":"2018","pmid":1,"isi":1,"tmp":{"image":"/images/cc_by_nc_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)"},"department":[{"_id":"MiSi"}],"oa_version":"Published Version","file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:47:15Z","file_name":"2018_ASCB_Dolati.pdf","checksum":"e98465b4416b3e804c47f40086932af2","date_created":"2019-02-14T12:34:29Z","file_size":6668971,"relation":"main_file","file_id":"5994","access_level":"open_access","creator":"kschuh"}],"publication_status":"published","page":"2674-2686","intvolume":"        29","author":[{"full_name":"Dolati, Setareh","first_name":"Setareh","last_name":"Dolati"},{"last_name":"Kage","full_name":"Kage, Frieda","first_name":"Frieda"},{"full_name":"Mueller, Jan","first_name":"Jan","last_name":"Mueller"},{"last_name":"Müsken","full_name":"Müsken, Mathias","first_name":"Mathias"},{"first_name":"Marieluise","full_name":"Kirchner, Marieluise","last_name":"Kirchner"},{"first_name":"Gunnar","full_name":"Dittmar, Gunnar","last_name":"Dittmar"},{"last_name":"Sixt","orcid":"0000-0002-6620-9179","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","full_name":"Sixt, Michael K"},{"last_name":"Rottner","full_name":"Rottner, Klemens","first_name":"Klemens"},{"last_name":"Falcke","full_name":"Falcke, Martin","first_name":"Martin"}],"external_id":{"isi":["000455641000011"],"pmid":["30156465"]}}]