[{"page":"1249 - 1258","title":"Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress","type":"journal_article","scopus_import":"1","oa_version":"Published Version","isi":1,"citation":{"short":"P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian, A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology 172 (2016) 1249–1258.","apa":"Zwack, P., De Clercq, I., Howton, T., Hallmark, H. T., Hurny, A., Keshishian, E., … Rashotte, A. (2016). Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress. <i>Plant Physiology</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1104/pp.16.00415\">https://doi.org/10.1104/pp.16.00415</a>","ieee":"P. Zwack <i>et al.</i>, “Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress,” <i>Plant Physiology</i>, vol. 172, no. 2. American Society of Plant Biologists, pp. 1249–1258, 2016.","chicago":"Zwack, Paul, Inge De Clercq, Timothy Howton, H Tucker Hallmark, Andrej Hurny, Erika Keshishian, Alyssa Parish, et al. “Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.” <i>Plant Physiology</i>. American Society of Plant Biologists, 2016. <a href=\"https://doi.org/10.1104/pp.16.00415\">https://doi.org/10.1104/pp.16.00415</a>.","ama":"Zwack P, De Clercq I, Howton T, et al. Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress. <i>Plant Physiology</i>. 2016;172(2):1249-1258. doi:<a href=\"https://doi.org/10.1104/pp.16.00415\">10.1104/pp.16.00415</a>","mla":"Zwack, Paul, et al. “Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.” <i>Plant Physiology</i>, vol. 172, no. 2, American Society of Plant Biologists, 2016, pp. 1249–58, doi:<a href=\"https://doi.org/10.1104/pp.16.00415\">10.1104/pp.16.00415</a>.","ista":"Zwack P, De Clercq I, Howton T, Hallmark HT, Hurny A, Keshishian E, Parish A, Benková E, Mukhtar MS, Van Breusegem F, Rashotte A. 2016. Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress. Plant Physiology. 172(2), 1249–1258."},"publication":"Plant Physiology","day":"02","external_id":{"isi":["000391147700047"]},"doi":"10.1104/pp.16.00415","article_processing_charge":"No","date_published":"2016-10-02T00:00:00Z","date_updated":"2025-09-22T08:22:54Z","publication_status":"published","_id":"1331","quality_controlled":"1","month":"10","intvolume":"       172","year":"2016","language":[{"iso":"eng"}],"author":[{"first_name":"Paul","last_name":"Zwack","full_name":"Zwack, Paul"},{"full_name":"De Clercq, Inge","last_name":"De Clercq","first_name":"Inge"},{"last_name":"Howton","first_name":"Timothy","full_name":"Howton, Timothy"},{"full_name":"Hallmark, H Tucker","last_name":"Hallmark","first_name":"H Tucker"},{"first_name":"Andrej","last_name":"Hurny","id":"4DC4AF46-F248-11E8-B48F-1D18A9856A87","full_name":"Hurny, Andrej","orcid":"0000-0003-3638-1426"},{"first_name":"Erika","last_name":"Keshishian","full_name":"Keshishian, Erika"},{"full_name":"Parish, Alyssa","first_name":"Alyssa","last_name":"Parish"},{"last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","orcid":"0000-0002-8510-9739","full_name":"Benková, Eva"},{"last_name":"Mukhtar","first_name":"M Shahid","full_name":"Mukhtar, M Shahid"},{"full_name":"Van Breusegem, Frank","last_name":"Van Breusegem","first_name":"Frank"},{"last_name":"Rashotte","first_name":"Aaron","full_name":"Rashotte, Aaron"}],"department":[{"_id":"EvBe"}],"status":"public","publist_id":"5937","publisher":"American Society of Plant Biologists","oa":1,"date_created":"2018-12-11T11:51:25Z","acknowledgement":"This work was financially supported by the following: The Alabama Agricultural Experiment Station HATCH grants 370222-310010-2055 and 370225-310006-2055 for funding to P.J.Z., E.A.K, A.M.P., and A.M.R. P.J.Z. and E.A.K were supported by an Auburn University Cellular and Molecular Biosciences Research Fellowship. I.D.C. is a postdoctoral fellow of the Research Foundation Flanders (FWO) (FWO/PDO14/043) and is also supported by FWO travel\r\ngrant 12N2415N. F.V.B. was supported by grants from the Interuniversity Attraction Poles Programme (IUAP P7/29 MARS) initiated by the Belgian Science Policy Office and Ghent University (Multidisciplinary Research Partnership Biotechnology for a Sustainable Economy, grant 01MRB510W).","issue":"2","abstract":[{"text":"Cytokinin is a phytohormone that is well known for its roles in numerous plant growth and developmental processes, yet it has also been linked to abiotic stress response in a less defined manner. Arabidopsis (Arabidopsis thaliana) Cytokinin Response Factor 6 (CRF6) is a cytokinin-responsive AP2/ERF-family transcription factor that, through the cytokinin signaling pathway, plays a key role in the inhibition of dark-induced senescence. CRF6 expression is also induced by oxidative stress, and here we show a novel function for CRF6 in relation to oxidative stress and identify downstream transcriptional targets of CRF6 that are repressed in response to oxidative stress. Analysis of transcriptomic changes in wild-type and crf6 mutant plants treated with H2O2 identified CRF6-dependent differentially expressed transcripts, many of which were repressed rather than induced. Moreover, many repressed genes also show decreased expression in 35S:CRF6 overexpressing plants. Together, these findings suggest that CRF6 functions largely as a transcriptional repressor. Interestingly, among the H2O2 repressed CRF6-dependent transcripts was a set of five genes associated with cytokinin processes: (signaling) ARR6, ARR9, ARR11, (biosynthesis) LOG7, and (transport) ABCG14. We have examined mutants of these cytokinin-associated target genes to reveal novel connections to oxidative stress. Further examination of CRF6-DNA interactions indicated that CRF6 may regulate its targets both directly and indirectly. Together, this shows that CRF6 functions during oxidative stress as a negative regulator to control this cytokinin-associated module of CRF6- dependent genes and establishes a novel connection between cytokinin and oxidative stress response.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1104/pp.16.00415"}],"article_type":"original","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":172,"publication_identifier":{"eissn":["1532-2548"],"issn":["0032-0889"]}},{"isi":1,"file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:44:44Z","creator":"system","checksum":"ef147bcbb8bd37e9079cf3ce06f5815d","relation":"main_file","file_id":"5039","file_size":1844107,"date_created":"2018-12-12T10:13:52Z","file_name":"IST-2016-662-v1+1_ncomms10333.pdf","access_level":"open_access"}],"citation":{"ama":"Chait RP, Palmer A, Yelin I, Kishony R. Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms10333\">10.1038/ncomms10333</a>","mla":"Chait, Remy P., et al. “Pervasive Selection for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.” <i>Nature Communications</i>, vol. 7, 10333, Nature Publishing Group, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms10333\">10.1038/ncomms10333</a>.","chicago":"Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.” <i>Nature Communications</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/ncomms10333\">https://doi.org/10.1038/ncomms10333</a>.","ista":"Chait RP, Palmer A, Yelin I, Kishony R. 2016. Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments. Nature Communications. 7, 10333.","ieee":"R. P. Chait, A. Palmer, I. Yelin, and R. Kishony, “Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments,” <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.","short":"R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).","apa":"Chait, R. P., Palmer, A., Yelin, I., &#38; Kishony, R. (2016). Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms10333\">https://doi.org/10.1038/ncomms10333</a>"},"day":"20","publication":"Nature Communications","external_id":{"isi":["000369021700002"]},"type":"journal_article","title":"Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments","scopus_import":"1","oa_version":"Published Version","date_published":"2016-01-20T00:00:00Z","_id":"1332","date_updated":"2025-09-22T08:22:19Z","publication_status":"published","month":"01","intvolume":"         7","quality_controlled":"1","doi":"10.1038/ncomms10333","article_number":"10333","article_processing_charge":"No","status":"public","ddc":["570","579"],"pubrep_id":"662","author":[{"id":"3464AE84-F248-11E8-B48F-1D18A9856A87","last_name":"Chait","first_name":"Remy P","orcid":"0000-0003-0876-3187","full_name":"Chait, Remy P"},{"last_name":"Palmer","first_name":"Adam","full_name":"Palmer, Adam"},{"last_name":"Yelin","first_name":"Idan","full_name":"Yelin, Idan"},{"first_name":"Roy","last_name":"Kishony","full_name":"Kishony, Roy"}],"year":"2016","language":[{"iso":"eng"}],"department":[{"_id":"CaGu"},{"_id":"GaTk"}],"acknowledgement":"This work was partially supported by US National Institutes of Health grant R01-GM081617, Israeli Centers of Research Excellence I-CORE Program ISF Grant No. 152/11, and the European Research Council FP7 ERC Grant 281891.","abstract":[{"lang":"eng","text":"Antibiotic-sensitive and -resistant bacteria coexist in natural environments with low, if detectable, antibiotic concentrations. Except possibly around localized antibiotic sources, where resistance can provide a strong advantage, bacterial fitness is dominated by stresses unaffected by resistance to the antibiotic. How do such mixed and heterogeneous conditions influence the selective advantage or disadvantage of antibiotic resistance? Here we find that sub-inhibitory levels of tetracyclines potentiate selection for or against tetracycline resistance around localized sources of almost any toxin or stress. Furthermore, certain stresses generate alternating rings of selection for and against resistance around a localized source of the antibiotic. In these conditions, localized antibiotic sources, even at high strengths, can actually produce a net selection against resistance to the antibiotic. Our results show that interactions between the effects of an antibiotic and other stresses in inhomogeneous environments can generate pervasive, complex patterns of selection both for and against antibiotic resistance."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":7,"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2020-07-14T12:44:44Z","date_created":"2018-12-11T11:51:25Z","publisher":"Nature Publishing Group","publist_id":"5936","oa":1},{"scopus_import":"1","title":"Humans choose representatives who enforce cooperation in social dilemmas through extortion","type":"journal_article","oa_version":"Published Version","citation":{"ieee":"M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, and J. Marotzke, “Humans choose representatives who enforce cooperation in social dilemmas through extortion,” <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.","short":"M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, J. Marotzke, Nature Communications 7 (2016).","apa":"Milinski, M., Hilbe, C., Semmann, D., Sommerfeld, R., &#38; Marotzke, J. (2016). Humans choose representatives who enforce cooperation in social dilemmas through extortion. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms10915\">https://doi.org/10.1038/ncomms10915</a>","ista":"Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. 2016. Humans choose representatives who enforce cooperation in social dilemmas through extortion. Nature Communications. 7, 10915.","mla":"Milinski, Manfred, et al. “Humans Choose Representatives Who Enforce Cooperation in Social Dilemmas through Extortion.” <i>Nature Communications</i>, vol. 7, 10915, Nature Publishing Group, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms10915\">10.1038/ncomms10915</a>.","ama":"Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. Humans choose representatives who enforce cooperation in social dilemmas through extortion. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms10915\">10.1038/ncomms10915</a>","chicago":"Milinski, Manfred, Christian Hilbe, Dirk Semmann, Ralf Sommerfeld, and Jochem Marotzke. “Humans Choose Representatives Who Enforce Cooperation in Social Dilemmas through Extortion.” <i>Nature Communications</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/ncomms10915\">https://doi.org/10.1038/ncomms10915</a>."},"isi":1,"file":[{"file_size":1432577,"access_level":"open_access","file_name":"IST-2016-661-v1+1_ncomms10915.pdf","date_created":"2018-12-12T10:10:44Z","creator":"system","file_id":"4834","checksum":"9ea0d7ce59a555a1cb8353d5559407cb","relation":"main_file","date_updated":"2020-07-14T12:44:44Z","content_type":"application/pdf"}],"external_id":{"isi":["000371720200001"]},"publication":"Nature Communications","day":"07","doi":"10.1038/ncomms10915","article_number":"10915","article_processing_charge":"No","date_published":"2016-03-07T00:00:00Z","intvolume":"         7","month":"03","quality_controlled":"1","_id":"1333","publication_status":"published","date_updated":"2025-09-22T08:21:34Z","author":[{"full_name":"Milinski, Manfred","last_name":"Milinski","first_name":"Manfred"},{"full_name":"Hilbe, Christian","orcid":"0000-0001-5116-955X","first_name":"Christian","last_name":"Hilbe","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Semmann, Dirk","last_name":"Semmann","first_name":"Dirk"},{"first_name":"Ralf","last_name":"Sommerfeld","full_name":"Sommerfeld, Ralf"},{"last_name":"Marotzke","first_name":"Jochem","full_name":"Marotzke, Jochem"}],"year":"2016","language":[{"iso":"eng"}],"corr_author":"1","department":[{"_id":"KrCh"}],"status":"public","pubrep_id":"661","ddc":["519","530","599"],"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_created":"2018-12-11T11:51:25Z","oa":1,"publisher":"Nature Publishing Group","publist_id":"5935","file_date_updated":"2020-07-14T12:44:44Z","abstract":[{"lang":"eng","text":"Social dilemmas force players to balance between personal and collective gain. In many dilemmas, such as elected governments negotiating climate-change mitigation measures, the decisions are made not by individual players but by their representatives. However, the behaviour of representatives in social dilemmas has not been investigated experimentally. Here inspired by the negotiations for greenhouse-gas emissions reductions, we experimentally study a collective-risk social dilemma that involves representatives deciding on behalf of their fellow group members. Representatives can be re-elected or voted out after each consecutive collective-risk game. Selfish players are preferentially elected and are hence found most frequently in the &quot;representatives&quot; treatment. Across all treatments, we identify the selfish players as extortioners. As predicted by our mathematical model, their steadfast strategies enforce cooperation from fair players who finally compensate almost completely the deficit caused by the extortionate co-players. Everybody gains, but the extortionate representatives and their groups gain the most."}],"acknowledgement":"We thank the students for participation; H.-J. Krambeck for writing the software for the game; H. Arndt, T. Bakker, L. Becks, H. Brendelberger, S. Dobler and T. Reusch for support; and the Max Planck Society for the Advancement of Science for funding.","volume":7,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"corr_author":"1","department":[{"_id":"JoCs"}],"author":[{"full_name":"Schönenberger, Philipp","id":"3B9D816C-F248-11E8-B48F-1D18A9856A87","last_name":"Schönenberger","first_name":"Philipp"},{"full_name":"O'Neill, Joseph","first_name":"Joseph","last_name":"O'Neill","id":"426376DC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","last_name":"Csicsvari","full_name":"Csicsvari, Jozsef L","orcid":"0000-0002-5193-4036"}],"language":[{"iso":"eng"}],"year":"2016","pubrep_id":"660","ddc":["570"],"status":"public","date_created":"2018-12-11T11:51:26Z","publisher":"Nature Publishing Group","oa":1,"publist_id":"5934","file_date_updated":"2020-07-14T12:44:44Z","project":[{"_id":"257A4776-B435-11E9-9278-68D0E5697425","grant_number":"281511","call_identifier":"FP7","name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex"},{"_id":"257D4372-B435-11E9-9278-68D0E5697425","grant_number":"I2072-B27","call_identifier":"FWF","name":"Interneuron plasticity during spatial learning"}],"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":7,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","abstract":[{"text":"Hippocampal neurons encode a cognitive map of space. These maps are thought to be updated during learning and in response to changes in the environment through activity-dependent synaptic plasticity. Here we examine how changes in activity influence spatial coding in rats using halorhodopsin-mediated, spatially selective optogenetic silencing. Halorhoposin stimulation leads to light-induced suppression in many place cells and interneurons; some place cells increase their firing through disinhibition, whereas some show no effect. We find that place fields of the unaffected subpopulation remain stable. On the other hand, place fields of suppressed place cells were unstable, showing remapping across sessions before and after optogenetic inhibition. Disinhibited place cells had stable maps but sustained an elevated firing rate. These findings suggest that place representation in the hippocampus is constantly governed by activity-dependent processes, and that disinhibition may provide a mechanism for rate remapping.","lang":"eng"}],"oa_version":"Published Version","scopus_import":"1","title":"Activity dependent plasticity of hippocampal place maps","type":"journal_article","external_id":{"isi":["000378007300001"]},"publication":"Nature Communications","day":"10","citation":{"short":"P. Schönenberger, J. O’Neill, J.L. Csicsvari, Nature Communications 7 (2016).","apa":"Schönenberger, P., O’Neill, J., &#38; Csicsvari, J. L. (2016). Activity dependent plasticity of hippocampal place maps. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms11824\">https://doi.org/10.1038/ncomms11824</a>","ieee":"P. Schönenberger, J. O’Neill, and J. L. Csicsvari, “Activity dependent plasticity of hippocampal place maps,” <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.","chicago":"Schönenberger, Philipp, Joseph O’Neill, and Jozsef L Csicsvari. “Activity Dependent Plasticity of Hippocampal Place Maps.” <i>Nature Communications</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/ncomms11824\">https://doi.org/10.1038/ncomms11824</a>.","ama":"Schönenberger P, O’Neill J, Csicsvari JL. Activity dependent plasticity of hippocampal place maps. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms11824\">10.1038/ncomms11824</a>","mla":"Schönenberger, Philipp, et al. “Activity Dependent Plasticity of Hippocampal Place Maps.” <i>Nature Communications</i>, vol. 7, 11824, Nature Publishing Group, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms11824\">10.1038/ncomms11824</a>.","ista":"Schönenberger P, O’Neill J, Csicsvari JL. 2016. Activity dependent plasticity of hippocampal place maps. Nature Communications. 7, 11824."},"isi":1,"file":[{"file_size":1793846,"file_name":"IST-2016-660-v1+1_ncomms11824.pdf","access_level":"open_access","date_created":"2018-12-12T10:16:10Z","creator":"system","checksum":"e43307754abe65b840a21939fe163618","relation":"main_file","file_id":"5196","date_updated":"2020-07-14T12:44:44Z","content_type":"application/pdf"}],"article_processing_charge":"No","doi":"10.1038/ncomms11824","article_number":"11824","intvolume":"         7","month":"06","quality_controlled":"1","_id":"1334","date_updated":"2025-09-22T08:20:24Z","publication_status":"published","date_published":"2016-06-10T00:00:00Z","ec_funded":1},{"date_updated":"2025-09-22T08:19:49Z","publication_status":"published","_id":"1335","quality_controlled":"1","intvolume":"      9837","month":"08","ec_funded":1,"date_published":"2016-08-31T00:00:00Z","article_processing_charge":"No","doi":"10.1007/978-3-662-53413-7_2","day":"31","external_id":{"isi":["000388924600002"],"arxiv":["1604.06764"]},"isi":1,"citation":{"ista":"Chatterjee K, Henzinger TA, Otop J. 2016. Quantitative monitor automata. SAS: Static Analysis Symposium, LNCS, vol. 9837, 23–38.","mla":"Chatterjee, Krishnendu, et al. <i>Quantitative Monitor Automata</i>. Vol. 9837, Springer, 2016, pp. 23–38, doi:<a href=\"https://doi.org/10.1007/978-3-662-53413-7_2\">10.1007/978-3-662-53413-7_2</a>.","ama":"Chatterjee K, Henzinger TA, Otop J. Quantitative monitor automata. In: Vol 9837. Springer; 2016:23-38. doi:<a href=\"https://doi.org/10.1007/978-3-662-53413-7_2\">10.1007/978-3-662-53413-7_2</a>","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. “Quantitative Monitor Automata,” 9837:23–38. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-662-53413-7_2\">https://doi.org/10.1007/978-3-662-53413-7_2</a>.","ieee":"K. Chatterjee, T. A. Henzinger, and J. Otop, “Quantitative monitor automata,” presented at the SAS: Static Analysis Symposium, Edinburgh, United Kingdom, 2016, vol. 9837, pp. 23–38.","apa":"Chatterjee, K., Henzinger, T. A., &#38; Otop, J. (2016). Quantitative monitor automata (Vol. 9837, pp. 23–38). Presented at the SAS: Static Analysis Symposium, Edinburgh, United Kingdom: Springer. <a href=\"https://doi.org/10.1007/978-3-662-53413-7_2\">https://doi.org/10.1007/978-3-662-53413-7_2</a>","short":"K. Chatterjee, T.A. Henzinger, J. Otop, in:, Springer, 2016, pp. 23–38."},"oa_version":"Preprint","page":"23 - 38","type":"conference","title":"Quantitative monitor automata","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":9837,"arxiv":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1604.06764"}],"abstract":[{"lang":"eng","text":"In this paper we review various automata-theoretic formalisms for expressing quantitative properties. We start with finite-state Boolean automata that express the traditional regular properties. We then consider weighted ω-automata that can measure the average density of events, which finite-state Boolean automata cannot. However, even weighted ω-automata cannot express basic performance properties like average response time. We finally consider two formalisms of weighted ω-automata with monitors, where the monitors are either (a) counters or (b) weighted automata themselves. We present a translation result to establish that these two formalisms are equivalent. Weighted ω-automata with monitors generalize weighted ω-automata, and can express average response time property. They present a natural, robust, and expressive framework for quantitative specifications, with important decidable properties."}],"oa":1,"publist_id":"5932","publisher":"Springer","date_created":"2018-12-11T11:51:26Z","project":[{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","call_identifier":"FWF","name":"Rigorous Systems Engineering"},{"name":"Formal methods for the design and analysis of complex systems","call_identifier":"FWF","grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425"},{"name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"_id":"25892FC0-B435-11E9-9278-68D0E5697425","grant_number":"ICT15-003","name":"Efficient Algorithms for Computer Aided Verification"}],"status":"public","conference":{"name":"SAS: Static Analysis Symposium","start_date":"2016-09-08","end_date":"2016-09-10","location":"Edinburgh, United Kingdom"},"alternative_title":["LNCS"],"department":[{"_id":"KrCh"},{"_id":"ToHe"}],"corr_author":"1","language":[{"iso":"eng"}],"year":"2016","author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"orcid":"0000−0002−2985−7724","full_name":"Henzinger, Thomas A","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A"},{"first_name":"Jan","id":"2FC5DA74-F248-11E8-B48F-1D18A9856A87","last_name":"Otop","full_name":"Otop, Jan"}]},{"year":"2016","page":"1-4","language":[{"iso":"eng"}],"title":"Learning Using Privileged Information","type":"book_chapter","author":[{"id":"2EA6D09E-F248-11E8-B48F-1D18A9856A87","last_name":"Sharmanska","first_name":"Viktoriia","orcid":"0000-0003-0192-9308","full_name":"Sharmanska, Viktoriia"},{"full_name":"Quadrianto, Novi","last_name":"Quadrianto","first_name":"Novi"}],"department":[{"_id":"ChLa"}],"oa_version":"None","corr_author":"1","citation":{"ista":"Sharmanska V, Quadrianto N. 2016.Learning Using Privileged Information. In: Encyclopedia of Machine Learning and Data Mining. , 1–4.","mla":"Sharmanska, Viktoriia, and Novi Quadrianto. “Learning Using Privileged Information.” <i>Encyclopedia of Machine Learning and Data Mining</i>, Springer Nature, 2016, pp. 1–4, doi:<a href=\"https://doi.org/10.1007/978-1-4899-7502-7_892-1\">10.1007/978-1-4899-7502-7_892-1</a>.","ama":"Sharmanska V, Quadrianto N. Learning Using Privileged Information. In: <i>Encyclopedia of Machine Learning and Data Mining</i>. Springer Nature; 2016:1-4. doi:<a href=\"https://doi.org/10.1007/978-1-4899-7502-7_892-1\">10.1007/978-1-4899-7502-7_892-1</a>","chicago":"Sharmanska, Viktoriia, and Novi Quadrianto. “Learning Using Privileged Information.” In <i>Encyclopedia of Machine Learning and Data Mining</i>, 1–4. Springer Nature, 2016. <a href=\"https://doi.org/10.1007/978-1-4899-7502-7_892-1\">https://doi.org/10.1007/978-1-4899-7502-7_892-1</a>.","ieee":"V. Sharmanska and N. Quadrianto, “Learning Using Privileged Information,” in <i>Encyclopedia of Machine Learning and Data Mining</i>, Springer Nature, 2016, pp. 1–4.","short":"V. Sharmanska, N. Quadrianto, in:, Encyclopedia of Machine Learning and Data Mining, Springer Nature, 2016, pp. 1–4.","apa":"Sharmanska, V., &#38; Quadrianto, N. (2016). Learning Using Privileged Information. In <i>Encyclopedia of Machine Learning and Data Mining</i> (pp. 1–4). Springer Nature. <a href=\"https://doi.org/10.1007/978-1-4899-7502-7_892-1\">https://doi.org/10.1007/978-1-4899-7502-7_892-1</a>"},"status":"public","publication":"Encyclopedia of Machine Learning and Data Mining","day":"06","doi":"10.1007/978-1-4899-7502-7_892-1","OA_type":"closed access","article_processing_charge":"No","publisher":"Springer Nature","date_created":"2025-07-10T13:57:52Z","abstract":[{"lang":"eng","text":"When applying machine learning techniques to real-world problems, prior knowledge plays a crucial role in enriching the learning system. This prior knowledge is typically defined by domain experts and can be integrated into machine learning algorithms in a variety of ways: as a preference of certain prediction functions over others, as a Bayesian prior over parameters, or as additional information about the samples in the training set used for learning a prediction function. The latter setup is called learning using privileged information (LUPI) and was adopted by Vapnik and Vashist in (Neural Netw, 2009). Formally, LUPI refers to the setting when, in addition to the main data modality, the learning system has access to an extra source of information about the training examples. The additional source of information is only available during training and therefore is called privileged. The main goal of LUPI is to utilize privileged information and to learn a better model in the main data modality than one would learn without the privileged source. As an illustration, for protein classification based on amino-acid sequences, the protein tertiary structure can be considered additional information. Another example is recognizing objects in images; the textual information in the form of image tags contains additional object descriptions and can be used as privileged."}],"date_published":"2016-07-06T00:00:00Z","date_updated":"2025-09-23T10:53:13Z","publication_status":"published","_id":"19991","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","publication_identifier":{"eisbn":["9781489975027"]},"month":"07"},{"article_processing_charge":"No","doi":"10.1007/s00440-014-0610-8","date_updated":"2025-09-18T10:46:46Z","publication_status":"published","_id":"1881","quality_controlled":"1","month":"02","intvolume":"       164","ec_funded":1,"date_published":"2016-02-01T00:00:00Z","oa_version":"Preprint","page":"165 - 241","title":"Extremal eigenvalues and eigenvectors of deformed Wigner matrices","type":"journal_article","scopus_import":"1","day":"01","publication":"Probability Theory and Related Fields","external_id":{"isi":["000373163300006"],"arxiv":["1310.7057"]},"isi":1,"citation":{"ieee":"J. Lee and K. Schnelli, “Extremal eigenvalues and eigenvectors of deformed Wigner matrices,” <i>Probability Theory and Related Fields</i>, vol. 164, no. 1–2. Springer, pp. 165–241, 2016.","apa":"Lee, J., &#38; Schnelli, K. (2016). Extremal eigenvalues and eigenvectors of deformed Wigner matrices. <i>Probability Theory and Related Fields</i>. Springer. <a href=\"https://doi.org/10.1007/s00440-014-0610-8\">https://doi.org/10.1007/s00440-014-0610-8</a>","short":"J. Lee, K. Schnelli, Probability Theory and Related Fields 164 (2016) 165–241.","ista":"Lee J, Schnelli K. 2016. Extremal eigenvalues and eigenvectors of deformed Wigner matrices. Probability Theory and Related Fields. 164(1–2), 165–241.","mla":"Lee, Jioon, and Kevin Schnelli. “Extremal Eigenvalues and Eigenvectors of Deformed Wigner Matrices.” <i>Probability Theory and Related Fields</i>, vol. 164, no. 1–2, Springer, 2016, pp. 165–241, doi:<a href=\"https://doi.org/10.1007/s00440-014-0610-8\">10.1007/s00440-014-0610-8</a>.","ama":"Lee J, Schnelli K. Extremal eigenvalues and eigenvectors of deformed Wigner matrices. <i>Probability Theory and Related Fields</i>. 2016;164(1-2):165-241. doi:<a href=\"https://doi.org/10.1007/s00440-014-0610-8\">10.1007/s00440-014-0610-8</a>","chicago":"Lee, Jioon, and Kevin Schnelli. “Extremal Eigenvalues and Eigenvectors of Deformed Wigner Matrices.” <i>Probability Theory and Related Fields</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00440-014-0610-8\">https://doi.org/10.1007/s00440-014-0610-8</a>."},"oa":1,"publisher":"Springer","publist_id":"5215","date_created":"2018-12-11T11:54:31Z","project":[{"name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7","grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":164,"acknowledgement":"Most of the presented work was obtained while Kevin Schnelli was staying at the IAS with the support of\r\nThe Fund For Math.","issue":"1-2","arxiv":1,"main_file_link":[{"url":"http://arxiv.org/abs/1310.7057","open_access":"1"}],"abstract":[{"text":"We consider random matrices of the form H=W+λV, λ∈ℝ+, where W is a real symmetric or complex Hermitian Wigner matrix of size N and V is a real bounded diagonal random matrix of size N with i.i.d.\\ entries that are independent of W. We assume subexponential decay for the matrix entries of W and we choose λ∼1, so that the eigenvalues of W and λV are typically of the same order. Further, we assume that the density of the entries of V is supported on a single interval and is convex near the edges of its support. In this paper we prove that there is λ+∈ℝ+ such that the largest eigenvalues of H are in the limit of large N determined by the order statistics of V for λ&gt;λ+. In particular, the largest eigenvalue of H has a Weibull distribution in the limit N→∞ if λ&gt;λ+. Moreover, for N sufficiently large, we show that the eigenvectors associated to the largest eigenvalues are partially localized for λ&gt;λ+, while they are completely delocalized for λ&lt;λ+. Similar results hold for the lowest eigenvalues. ","lang":"eng"}],"department":[{"_id":"LaEr"}],"corr_author":"1","year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"Lee, Jioon","last_name":"Lee","first_name":"Jioon"},{"orcid":"0000-0003-0954-3231","full_name":"Schnelli, Kevin","last_name":"Schnelli","id":"434AD0AE-F248-11E8-B48F-1D18A9856A87","first_name":"Kevin"}],"status":"public"},{"file_date_updated":"2020-07-14T12:44:56Z","publist_id":"5721","oa":1,"publisher":"eLife Sciences Publications","date_created":"2018-12-11T11:52:14Z","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"project":[{"_id":"2536F660-B435-11E9-9278-68D0E5697425","grant_number":"334077","call_identifier":"FP7","name":"Investigating the role of transporters in invasive migration through junctions"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":5,"issue":"February 2016","abstract":[{"lang":"eng","text":"The actin cytoskeleton plays important roles in the formation and internalization of endocytic vesicles. In yeast, endocytic vesicles move towards early endosomes along actin cables, however, the molecular machinery regulating interaction between endocytic vesicles and actin cables is poorly understood. The Eps15-like protein Pan1p plays a key role in actin-mediated endocytosis and is negatively regulated by Ark1 and Prk1 kinases. Here we show that pan1 mutated to prevent phosphorylation at all 18 threonines, pan1-18TA, displayed almost the same endocytic defect as ark1Δ prk1Δ cells, and contained abnormal actin concentrations including several endocytic compartments. Early endosomes were highly localized in the actin concentrations and displayed movement along actin cables. The dephosphorylated form of Pan1p also caused stable associations between endocytic vesicles and actin cables, and between endocytic vesicles and endosomes. Thus Pan1 phosphorylation is part of a novel mechanism that regulates endocytic compartment interactions with each other and with actin cables."}],"department":[{"_id":"DaSi"}],"year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"Toshima, Junko","first_name":"Junko","last_name":"Toshima"},{"full_name":"Furuya, Eri","last_name":"Furuya","first_name":"Eri"},{"full_name":"Nagano, Makoto","first_name":"Makoto","last_name":"Nagano"},{"full_name":"Kanno, Chisa","last_name":"Kanno","first_name":"Chisa"},{"last_name":"Sakamoto","first_name":"Yuta","full_name":"Sakamoto, Yuta"},{"first_name":"Masashi","last_name":"Ebihara","full_name":"Ebihara, Masashi"},{"orcid":"0000-0001-8323-8353","full_name":"Siekhaus, Daria E","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","last_name":"Siekhaus","first_name":"Daria E"},{"full_name":"Toshima, Jiro","first_name":"Jiro","last_name":"Toshima"}],"ddc":["570"],"pubrep_id":"529","status":"public","article_processing_charge":"No","article_number":"e10276","doi":"10.7554/eLife.10276","publication_status":"published","date_updated":"2025-09-18T11:41:25Z","_id":"1475","quality_controlled":"1","intvolume":"         5","month":"02","ec_funded":1,"date_published":"2016-02-25T00:00:00Z","oa_version":"Published Version","type":"journal_article","title":"Yeast Eps15-like endocytic protein Pan1p regulates the interaction between endocytic vesicles, endosomes and the actin cytoskeleton","scopus_import":"1","publication":"eLife","day":"25","external_id":{"isi":["000371885700001"]},"file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:44:56Z","creator":"system","checksum":"d1cc44870580756ba8badd8e41adfdb5","relation":"main_file","file_id":"4793","file_size":5198001,"access_level":"open_access","file_name":"IST-2016-529-v1+1_elife-10276-v1.pdf","date_created":"2018-12-12T10:10:08Z"}],"isi":1,"citation":{"apa":"Toshima, J., Furuya, E., Nagano, M., Kanno, C., Sakamoto, Y., Ebihara, M., … Toshima, J. (2016). Yeast Eps15-like endocytic protein Pan1p regulates the interaction between endocytic vesicles, endosomes and the actin cytoskeleton. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.10276\">https://doi.org/10.7554/eLife.10276</a>","short":"J. Toshima, E. Furuya, M. Nagano, C. Kanno, Y. Sakamoto, M. Ebihara, D.E. Siekhaus, J. Toshima, ELife 5 (2016).","ieee":"J. Toshima <i>et al.</i>, “Yeast Eps15-like endocytic protein Pan1p regulates the interaction between endocytic vesicles, endosomes and the actin cytoskeleton,” <i>eLife</i>, vol. 5, no. February 2016. eLife Sciences Publications, 2016.","chicago":"Toshima, Junko, Eri Furuya, Makoto Nagano, Chisa Kanno, Yuta Sakamoto, Masashi Ebihara, Daria E Siekhaus, and Jiro Toshima. “Yeast Eps15-like Endocytic Protein Pan1p Regulates the Interaction between Endocytic Vesicles, Endosomes and the Actin Cytoskeleton.” <i>ELife</i>. eLife Sciences Publications, 2016. <a href=\"https://doi.org/10.7554/eLife.10276\">https://doi.org/10.7554/eLife.10276</a>.","ama":"Toshima J, Furuya E, Nagano M, et al. Yeast Eps15-like endocytic protein Pan1p regulates the interaction between endocytic vesicles, endosomes and the actin cytoskeleton. <i>eLife</i>. 2016;5(February 2016). doi:<a href=\"https://doi.org/10.7554/eLife.10276\">10.7554/eLife.10276</a>","mla":"Toshima, Junko, et al. “Yeast Eps15-like Endocytic Protein Pan1p Regulates the Interaction between Endocytic Vesicles, Endosomes and the Actin Cytoskeleton.” <i>ELife</i>, vol. 5, no. February 2016, e10276, eLife Sciences Publications, 2016, doi:<a href=\"https://doi.org/10.7554/eLife.10276\">10.7554/eLife.10276</a>.","ista":"Toshima J, Furuya E, Nagano M, Kanno C, Sakamoto Y, Ebihara M, Siekhaus DE, Toshima J. 2016. Yeast Eps15-like endocytic protein Pan1p regulates the interaction between endocytic vesicles, endosomes and the actin cytoskeleton. eLife. 5(February 2016), e10276."}},{"article_processing_charge":"No","doi":"10.1242/jcs.176651","date_updated":"2025-09-18T11:39:13Z","publication_status":"published","_id":"1476","quality_controlled":"1","month":"01","intvolume":"       129","ec_funded":1,"date_published":"2016-01-15T00:00:00Z","oa_version":"Published Version","page":"367 - 379","title":"Srv2/CAP is required for polarized actin cable assembly and patch internalization during clathrin-mediated endocytosis","type":"journal_article","scopus_import":"1","publication":"Journal of Cell Science","day":"15","external_id":{"isi":["000369504000012"]},"file":[{"date_updated":"2020-07-14T12:44:56Z","content_type":"application/pdf","date_created":"2018-12-12T10:11:08Z","file_name":"IST-2017-767-v1+1_367.full.pdf","access_level":"open_access","file_size":7176912,"file_id":"4861","relation":"main_file","checksum":"2da0a09149a9ed956cdf79a95c17f08a","creator":"system"}],"isi":1,"citation":{"ieee":"J. Toshima <i>et al.</i>, “Srv2/CAP is required for polarized actin cable assembly and patch internalization during clathrin-mediated endocytosis,” <i>Journal of Cell Science</i>, vol. 129, no. 2. Company of Biologists, pp. 367–379, 2016.","short":"J. Toshima, C. Horikomi, A. Okada, M. Hatori, M. Nagano, A. Masuda, W. Yamamoto, D.E. Siekhaus, J. Toshima, Journal of Cell Science 129 (2016) 367–379.","apa":"Toshima, J., Horikomi, C., Okada, A., Hatori, M., Nagano, M., Masuda, A., … Toshima, J. (2016). Srv2/CAP is required for polarized actin cable assembly and patch internalization during clathrin-mediated endocytosis. <i>Journal of Cell Science</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/jcs.176651\">https://doi.org/10.1242/jcs.176651</a>","mla":"Toshima, Junko, et al. “Srv2/CAP Is Required for Polarized Actin Cable Assembly and Patch Internalization during Clathrin-Mediated Endocytosis.” <i>Journal of Cell Science</i>, vol. 129, no. 2, Company of Biologists, 2016, pp. 367–79, doi:<a href=\"https://doi.org/10.1242/jcs.176651\">10.1242/jcs.176651</a>.","ama":"Toshima J, Horikomi C, Okada A, et al. Srv2/CAP is required for polarized actin cable assembly and patch internalization during clathrin-mediated endocytosis. <i>Journal of Cell Science</i>. 2016;129(2):367-379. doi:<a href=\"https://doi.org/10.1242/jcs.176651\">10.1242/jcs.176651</a>","chicago":"Toshima, Junko, Chika Horikomi, Asuka Okada, Makiko Hatori, Makoto Nagano, Atsushi Masuda, Wataru Yamamoto, Daria E Siekhaus, and Jiro Toshima. “Srv2/CAP Is Required for Polarized Actin Cable Assembly and Patch Internalization during Clathrin-Mediated Endocytosis.” <i>Journal of Cell Science</i>. Company of Biologists, 2016. <a href=\"https://doi.org/10.1242/jcs.176651\">https://doi.org/10.1242/jcs.176651</a>.","ista":"Toshima J, Horikomi C, Okada A, Hatori M, Nagano M, Masuda A, Yamamoto W, Siekhaus DE, Toshima J. 2016. Srv2/CAP is required for polarized actin cable assembly and patch internalization during clathrin-mediated endocytosis. Journal of Cell Science. 129(2), 367–379."},"file_date_updated":"2020-07-14T12:44:56Z","oa":1,"publist_id":"5720","publisher":"Company of Biologists","date_created":"2018-12-11T11:52:14Z","has_accepted_license":"1","project":[{"_id":"2536F660-B435-11E9-9278-68D0E5697425","grant_number":"334077","call_identifier":"FP7","name":"Investigating the role of transporters in invasive migration through junctions"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":129,"acknowledgement":"We are grateful to Anthony Bretscher (Cornell University, NY) for providing the bni1-12 bnr1Δ (Y4135) strain. J.Y.T. was supported by a Japan Society for the Promotion of Science (JSPS) KAKENHI grant [grant number 26440067]; the Takeda Science Foundation; and the Novartis Foundation (Japan). J.T. was supported by a JSPS KAKENHI grant [grant number 25440054]; the Takeda Science Foundation; and the Kurata Memorial Hitachi Science and Technology Foundation. D.E.S. was supported by the European Union [grant number PCIG12-GA-2012-334077].","issue":"2","abstract":[{"text":"The dynamic assembly and disassembly of actin filaments is essential for the formation and transport of vesicles during endocytosis. In yeast, two types of actin structures, namely cortical patches and cytoplasmic cables, play a direct role in endocytosis, but how their interaction is regulated remains unclear. Here, we show that Srv2/CAP, an evolutionarily conserved actin regulator, is required for efficient endocytosis owing to its role in the formation of the actin patches that aid initial vesicle invagination and of the actin cables that these move along. Deletion of the SRV2 gene resulted in the appearance of aberrant fragmented actin cables that frequently moved past actin patches, the sites of endocytosis. We find that the C-terminal CARP domain of Srv2p is vitally important for the proper assembly of actin patches and cables; we also demonstrate that the N-terminal helical folded domain of Srv2 is required for its localization to actin patches, specifically to the ADP-actin rich region through an interaction with cofilin. These results demonstrate the in vivo roles of Srv2p in the regulation of the actin cytoskeleton during clathrin-mediated endocytosis","lang":"eng"}],"department":[{"_id":"DaSi"}],"year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"Toshima, Junko","first_name":"Junko","last_name":"Toshima"},{"full_name":"Horikomi, Chika","first_name":"Chika","last_name":"Horikomi"},{"full_name":"Okada, Asuka","first_name":"Asuka","last_name":"Okada"},{"full_name":"Hatori, Makiko","first_name":"Makiko","last_name":"Hatori"},{"first_name":"Makoto","last_name":"Nagano","full_name":"Nagano, Makoto"},{"last_name":"Masuda","first_name":"Atsushi","full_name":"Masuda, Atsushi"},{"first_name":"Wataru","last_name":"Yamamoto","full_name":"Yamamoto, Wataru"},{"full_name":"Siekhaus, Daria E","orcid":"0000-0001-8323-8353","first_name":"Daria E","last_name":"Siekhaus","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jiro","last_name":"Toshima","full_name":"Toshima, Jiro"}],"ddc":["570","576"],"pubrep_id":"767","status":"public"},{"volume":82,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"2295"},{"relation":"earlier_version","status":"public","id":"5400"}]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1309.2802"}],"abstract":[{"text":"We consider partially observable Markov decision processes (POMDPs) with ω-regular conditions specified as parity objectives. The class of ω-regular languages provides a robust specification language to express properties in verification, and parity objectives are canonical forms to express them. The qualitative analysis problem given a POMDP and a parity objective asks whether there is a strategy to ensure that the objective is satisfied with probability 1 (resp. positive probability). While the qualitative analysis problems are undecidable even for special cases of parity objectives, we establish decidability (with optimal complexity) for POMDPs with all parity objectives under finite-memory strategies. We establish optimal (exponential) memory bounds and EXPTIME-completeness of the qualitative analysis problems under finite-memory strategies for POMDPs with parity objectives. We also present a practical approach, where we design heuristics to deal with the exponential complexity, and have applied our implementation on a number of POMDP examples.","lang":"eng"}],"issue":"5","arxiv":1,"date_created":"2018-12-11T11:52:15Z","publisher":"Elsevier","oa":1,"publist_id":"5718","project":[{"_id":"2584A770-B435-11E9-9278-68D0E5697425","grant_number":"P 23499-N23","call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"name":"Game Theory","call_identifier":"FWF","grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425"},{"name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"status":"public","corr_author":"1","department":[{"_id":"KrCh"}],"author":[{"orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu"},{"full_name":"Chmelik, Martin","id":"3624234E-F248-11E8-B48F-1D18A9856A87","last_name":"Chmelik","first_name":"Martin"},{"full_name":"Tracol, Mathieu","last_name":"Tracol","id":"3F54FA38-F248-11E8-B48F-1D18A9856A87","first_name":"Mathieu"}],"year":"2016","language":[{"iso":"eng"}],"intvolume":"        82","month":"08","quality_controlled":"1","_id":"1477","date_updated":"2025-09-18T11:38:39Z","publication_status":"published","date_published":"2016-08-01T00:00:00Z","ec_funded":1,"article_processing_charge":"No","doi":"10.1016/j.jcss.2016.02.009","external_id":{"arxiv":["1309.2802"],"isi":["000374425900015"]},"publication":"Journal of Computer and System Sciences","day":"01","citation":{"apa":"Chatterjee, K., Chmelik, M., &#38; Tracol, M. (2016). What is decidable about partially observable Markov decision processes with ω-regular objectives. <i>Journal of Computer and System Sciences</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcss.2016.02.009\">https://doi.org/10.1016/j.jcss.2016.02.009</a>","short":"K. Chatterjee, M. Chmelik, M. Tracol, Journal of Computer and System Sciences 82 (2016) 878–911.","ieee":"K. Chatterjee, M. Chmelik, and M. Tracol, “What is decidable about partially observable Markov decision processes with ω-regular objectives,” <i>Journal of Computer and System Sciences</i>, vol. 82, no. 5. Elsevier, pp. 878–911, 2016.","chicago":"Chatterjee, Krishnendu, Martin Chmelik, and Mathieu Tracol. “What Is Decidable about Partially Observable Markov Decision Processes with ω-Regular Objectives.” <i>Journal of Computer and System Sciences</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.jcss.2016.02.009\">https://doi.org/10.1016/j.jcss.2016.02.009</a>.","mla":"Chatterjee, Krishnendu, et al. “What Is Decidable about Partially Observable Markov Decision Processes with ω-Regular Objectives.” <i>Journal of Computer and System Sciences</i>, vol. 82, no. 5, Elsevier, 2016, pp. 878–911, doi:<a href=\"https://doi.org/10.1016/j.jcss.2016.02.009\">10.1016/j.jcss.2016.02.009</a>.","ama":"Chatterjee K, Chmelik M, Tracol M. What is decidable about partially observable Markov decision processes with ω-regular objectives. <i>Journal of Computer and System Sciences</i>. 2016;82(5):878-911. doi:<a href=\"https://doi.org/10.1016/j.jcss.2016.02.009\">10.1016/j.jcss.2016.02.009</a>","ista":"Chatterjee K, Chmelik M, Tracol M. 2016. What is decidable about partially observable Markov decision processes with ω-regular objectives. Journal of Computer and System Sciences. 82(5), 878–911."},"isi":1,"oa_version":"Preprint","scopus_import":"1","type":"journal_article","title":"What is decidable about partially observable Markov decision processes with ω-regular objectives","page":"878 - 911"},{"article_processing_charge":"No","article_number":"035002","doi":"10.1088/1367-2630/18/3/035002","quality_controlled":"1","month":"02","intvolume":"        18","date_updated":"2025-09-18T11:37:58Z","publication_status":"published","_id":"1478","date_published":"2016-02-29T00:00:00Z","oa_version":"Published Version","scopus_import":"1","title":"Decay of correlations and absence of superfluidity in the disordered Tonks-Girardeau gas","type":"journal_article","external_id":{"isi":["000373728100001"]},"day":"29","publication":"New Journal of Physics","citation":{"short":"R. Seiringer, S. Warzel, New Journal of Physics 18 (2016).","apa":"Seiringer, R., &#38; Warzel, S. (2016). Decay of correlations and absence of superfluidity in the disordered Tonks-Girardeau gas. <i>New Journal of Physics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1367-2630/18/3/035002\">https://doi.org/10.1088/1367-2630/18/3/035002</a>","ieee":"R. Seiringer and S. Warzel, “Decay of correlations and absence of superfluidity in the disordered Tonks-Girardeau gas,” <i>New Journal of Physics</i>, vol. 18, no. 3. IOP Publishing, 2016.","chicago":"Seiringer, Robert, and Simone Warzel. “Decay of Correlations and Absence of Superfluidity in the Disordered Tonks-Girardeau Gas.” <i>New Journal of Physics</i>. IOP Publishing, 2016. <a href=\"https://doi.org/10.1088/1367-2630/18/3/035002\">https://doi.org/10.1088/1367-2630/18/3/035002</a>.","mla":"Seiringer, Robert, and Simone Warzel. “Decay of Correlations and Absence of Superfluidity in the Disordered Tonks-Girardeau Gas.” <i>New Journal of Physics</i>, vol. 18, no. 3, 035002, IOP Publishing, 2016, doi:<a href=\"https://doi.org/10.1088/1367-2630/18/3/035002\">10.1088/1367-2630/18/3/035002</a>.","ama":"Seiringer R, Warzel S. Decay of correlations and absence of superfluidity in the disordered Tonks-Girardeau gas. <i>New Journal of Physics</i>. 2016;18(3). doi:<a href=\"https://doi.org/10.1088/1367-2630/18/3/035002\">10.1088/1367-2630/18/3/035002</a>","ista":"Seiringer R, Warzel S. 2016. Decay of correlations and absence of superfluidity in the disordered Tonks-Girardeau gas. New Journal of Physics. 18(3), 035002."},"file":[{"creator":"system","file_id":"5276","relation":"main_file","checksum":"4f959eabc19d2a2f518318a450a4d424","file_size":965607,"access_level":"open_access","date_created":"2018-12-12T10:17:22Z","file_name":"IST-2016-579-v1+1_njp_18_3_035002.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:44:56Z"}],"isi":1,"oa":1,"publisher":"IOP Publishing","publist_id":"5716","date_created":"2018-12-11T11:52:15Z","file_date_updated":"2020-07-14T12:44:56Z","project":[{"grant_number":"P27533_N27","_id":"25C878CE-B435-11E9-9278-68D0E5697425","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","call_identifier":"FWF"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","volume":18,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","abstract":[{"text":"We consider the Tonks-Girardeau gas subject to a random external potential. If the disorder is such that the underlying one-particle Hamiltonian displays localization (which is known to be generically the case), we show that there is exponential decay of correlations in the many-body eigenstates. Moreover, there is no Bose-Einstein condensation and no superfluidity, even at zero temperature.","lang":"eng"}],"issue":"3","department":[{"_id":"RoSe"}],"year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Warzel, Simone","first_name":"Simone","last_name":"Warzel"}],"pubrep_id":"579","ddc":["510","530"],"status":"public"},{"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"project":[{"_id":"258C570E-B435-11E9-9278-68D0E5697425","grant_number":"259668","call_identifier":"FP7","name":"Provable Security for Physical Cryptography"}],"file_date_updated":"2020-07-14T12:44:56Z","date_created":"2018-12-11T11:52:16Z","publisher":"Springer","oa":1,"publist_id":"5715","issue":"3","acknowledgement":"This work was partly funded by the European Research Council under ERC Starting Grant 259668-PSPC and ERC Advanced Grant 321310-PERCY.\r\n","abstract":[{"lang":"eng","text":"Most entropy notions H(.) like Shannon or min-entropy satisfy a chain rule stating that for random variables X,Z, and A we have H(X|Z,A)≥H(X|Z)−|A|. That is, by conditioning on A the entropy of X can decrease by at most the bitlength |A| of A. Such chain rules are known to hold for some computational entropy notions like Yao’s and unpredictability-entropy. For HILL entropy, the computational analogue of min-entropy, the chain rule is of special interest and has found many applications, including leakage-resilient cryptography, deterministic encryption, and memory delegation. These applications rely on restricted special cases of the chain rule. Whether the chain rule for conditional HILL entropy holds in general was an open problem for which we give a strong negative answer: we construct joint distributions (X,Z,A), where A is a distribution over a single bit, such that the HILL entropy H HILL (X|Z) is large but H HILL (X|Z,A) is basically zero.\r\n\r\nOur counterexample just makes the minimal assumption that NP⊈P/poly. Under the stronger assumption that injective one-way function exist, we can make all the distributions efficiently samplable.\r\n\r\nFinally, we show that some more sophisticated cryptographic objects like lossy functions can be used to sample a distribution constituting a counterexample to the chain rule making only a single invocation to the underlying object."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"2940"}]},"volume":25,"author":[{"first_name":"Stephan","last_name":"Krenn","id":"329FCCF0-F248-11E8-B48F-1D18A9856A87","full_name":"Krenn, Stephan","orcid":"0000-0003-2835-9093"},{"orcid":"0000-0002-9139-1654","full_name":"Pietrzak, Krzysztof Z","last_name":"Pietrzak","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof Z"},{"full_name":"Wadia, Akshay","first_name":"Akshay","last_name":"Wadia"},{"full_name":"Wichs, Daniel","last_name":"Wichs","first_name":"Daniel"}],"year":"2016","language":[{"iso":"eng"}],"department":[{"_id":"KrPi"}],"status":"public","ddc":["004"],"pubrep_id":"766","doi":"10.1007/s00037-015-0120-9","article_processing_charge":"No","date_published":"2016-09-01T00:00:00Z","ec_funded":1,"_id":"1479","date_updated":"2025-09-18T11:37:23Z","publication_status":"published","month":"09","intvolume":"        25","quality_controlled":"1","type":"journal_article","title":"A counterexample to the chain rule for conditional HILL entropy","page":"567 - 605","scopus_import":"1","oa_version":"Submitted Version","isi":1,"file":[{"date_created":"2018-12-12T10:13:29Z","access_level":"open_access","file_name":"IST-2017-766-v1+1_678.pdf","file_size":483258,"checksum":"7659296174fa75f5f0364f31f46f4bcf","relation":"main_file","file_id":"5012","creator":"system","date_updated":"2020-07-14T12:44:56Z","content_type":"application/pdf"}],"citation":{"ista":"Krenn S, Pietrzak KZ, Wadia A, Wichs D. 2016. A counterexample to the chain rule for conditional HILL entropy. Computational Complexity. 25(3), 567–605.","mla":"Krenn, Stephan, et al. “A Counterexample to the Chain Rule for Conditional HILL Entropy.” <i>Computational Complexity</i>, vol. 25, no. 3, Springer, 2016, pp. 567–605, doi:<a href=\"https://doi.org/10.1007/s00037-015-0120-9\">10.1007/s00037-015-0120-9</a>.","ama":"Krenn S, Pietrzak KZ, Wadia A, Wichs D. A counterexample to the chain rule for conditional HILL entropy. <i>Computational Complexity</i>. 2016;25(3):567-605. doi:<a href=\"https://doi.org/10.1007/s00037-015-0120-9\">10.1007/s00037-015-0120-9</a>","chicago":"Krenn, Stephan, Krzysztof Z Pietrzak, Akshay Wadia, and Daniel Wichs. “A Counterexample to the Chain Rule for Conditional HILL Entropy.” <i>Computational Complexity</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00037-015-0120-9\">https://doi.org/10.1007/s00037-015-0120-9</a>.","ieee":"S. Krenn, K. Z. Pietrzak, A. Wadia, and D. Wichs, “A counterexample to the chain rule for conditional HILL entropy,” <i>Computational Complexity</i>, vol. 25, no. 3. Springer, pp. 567–605, 2016.","short":"S. Krenn, K.Z. Pietrzak, A. Wadia, D. Wichs, Computational Complexity 25 (2016) 567–605.","apa":"Krenn, S., Pietrzak, K. Z., Wadia, A., &#38; Wichs, D. (2016). A counterexample to the chain rule for conditional HILL entropy. <i>Computational Complexity</i>. Springer. <a href=\"https://doi.org/10.1007/s00037-015-0120-9\">https://doi.org/10.1007/s00037-015-0120-9</a>"},"day":"01","publication":"Computational Complexity","external_id":{"isi":["000382686200002"]}},{"day":"07","publication":"Proceedings of the London Mathematical Society","external_id":{"isi":["000371605500002"],"arxiv":["1412.6185"]},"isi":1,"citation":{"short":"M. Michałek, B. Sturmfels, C. Uhler, P. Zwiernik, Proceedings of the London Mathematical Society 112 (2016) 27–56.","apa":"Michałek, M., Sturmfels, B., Uhler, C., &#38; Zwiernik, P. (2016). Exponential varieties. <i>Proceedings of the London Mathematical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1112/plms/pdv066\">https://doi.org/10.1112/plms/pdv066</a>","ieee":"M. Michałek, B. Sturmfels, C. Uhler, and P. Zwiernik, “Exponential varieties,” <i>Proceedings of the London Mathematical Society</i>, vol. 112, no. 1. Oxford University Press, pp. 27–56, 2016.","ista":"Michałek M, Sturmfels B, Uhler C, Zwiernik P. 2016. Exponential varieties. Proceedings of the London Mathematical Society. 112(1), 27–56.","chicago":"Michałek, Mateusz, Bernd Sturmfels, Caroline Uhler, and Piotr Zwiernik. “Exponential Varieties.” <i>Proceedings of the London Mathematical Society</i>. Oxford University Press, 2016. <a href=\"https://doi.org/10.1112/plms/pdv066\">https://doi.org/10.1112/plms/pdv066</a>.","mla":"Michałek, Mateusz, et al. “Exponential Varieties.” <i>Proceedings of the London Mathematical Society</i>, vol. 112, no. 1, Oxford University Press, 2016, pp. 27–56, doi:<a href=\"https://doi.org/10.1112/plms/pdv066\">10.1112/plms/pdv066</a>.","ama":"Michałek M, Sturmfels B, Uhler C, Zwiernik P. Exponential varieties. <i>Proceedings of the London Mathematical Society</i>. 2016;112(1):27-56. doi:<a href=\"https://doi.org/10.1112/plms/pdv066\">10.1112/plms/pdv066</a>"},"oa_version":"Preprint","page":"27 - 56","title":"Exponential varieties","type":"journal_article","scopus_import":"1","publication_status":"published","date_updated":"2025-09-18T11:36:31Z","_id":"1480","quality_controlled":"1","intvolume":"       112","month":"01","date_published":"2016-01-07T00:00:00Z","article_processing_charge":"No","doi":"10.1112/plms/pdv066","status":"public","department":[{"_id":"CaUh"}],"year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"Michałek, Mateusz","last_name":"Michałek","first_name":"Mateusz"},{"last_name":"Sturmfels","first_name":"Bernd","full_name":"Sturmfels, Bernd"},{"first_name":"Caroline","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87","last_name":"Uhler","full_name":"Uhler, Caroline","orcid":"0000-0002-7008-0216"},{"first_name":"Piotr","last_name":"Zwiernik","full_name":"Zwiernik, Piotr"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":112,"issue":"1","arxiv":1,"main_file_link":[{"url":"http://arxiv.org/abs/1412.6185","open_access":"1"}],"abstract":[{"text":"Exponential varieties arise from exponential families in statistics. These real algebraic varieties have strong positivity and convexity properties, familiar from toric varieties and their moment maps. Among them are varieties of inverses of symmetric matrices satisfying linear constraints. This class includes Gaussian graphical models. We develop a general theory of exponential varieties. These are derived from hyperbolic polynomials and their integral representations. We compare the multidegrees and ML degrees of the gradient map for hyperbolic polynomials. ","lang":"eng"}],"oa":1,"publisher":"Oxford University Press","publist_id":"5714","date_created":"2018-12-11T11:52:16Z"},{"article_number":"e0147830","doi":"10.1371/journal.pone.0147830","article_processing_charge":"No","date_published":"2016-02-01T00:00:00Z","quality_controlled":"1","intvolume":"        11","month":"02","publication_status":"published","date_updated":"2025-09-18T11:35:51Z","_id":"1482","scopus_import":"1","title":"Centering the organizing center in the Arabidopsis thaliana shoot apical meristem by a combination of cytokinin signaling and self-organization","type":"journal_article","oa_version":"Published Version","citation":{"apa":"Adibi, M., Yoshida, S., Weijers, D., &#38; Fleck, C. (2016). Centering the organizing center in the Arabidopsis thaliana shoot apical meristem by a combination of cytokinin signaling and self-organization. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0147830\">https://doi.org/10.1371/journal.pone.0147830</a>","short":"M. Adibi, S. Yoshida, D. Weijers, C. Fleck, PLoS One 11 (2016).","ieee":"M. Adibi, S. Yoshida, D. Weijers, and C. Fleck, “Centering the organizing center in the Arabidopsis thaliana shoot apical meristem by a combination of cytokinin signaling and self-organization,” <i>PLoS One</i>, vol. 11, no. 2. Public Library of Science, 2016.","chicago":"Adibi, Milad, Saiko Yoshida, Dolf Weijers, and Christian Fleck. “Centering the Organizing Center in the Arabidopsis Thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization.” <i>PLoS One</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0147830\">https://doi.org/10.1371/journal.pone.0147830</a>.","ama":"Adibi M, Yoshida S, Weijers D, Fleck C. Centering the organizing center in the Arabidopsis thaliana shoot apical meristem by a combination of cytokinin signaling and self-organization. <i>PLoS One</i>. 2016;11(2). doi:<a href=\"https://doi.org/10.1371/journal.pone.0147830\">10.1371/journal.pone.0147830</a>","mla":"Adibi, Milad, et al. “Centering the Organizing Center in the Arabidopsis Thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization.” <i>PLoS One</i>, vol. 11, no. 2, e0147830, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0147830\">10.1371/journal.pone.0147830</a>.","ista":"Adibi M, Yoshida S, Weijers D, Fleck C. 2016. Centering the organizing center in the Arabidopsis thaliana shoot apical meristem by a combination of cytokinin signaling and self-organization. PLoS One. 11(2), e0147830."},"file":[{"checksum":"6066146e527335030f83aa5924ab72a6","relation":"main_file","file_id":"5066","creator":"system","file_name":"IST-2016-521-v1+1_journal.pone.0147830.PDF","date_created":"2018-12-12T10:14:16Z","access_level":"open_access","file_size":4297148,"content_type":"application/pdf","date_updated":"2020-07-14T12:44:57Z"}],"isi":1,"external_id":{"isi":["000370054100011"]},"publication":"PLoS One","day":"01","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publisher":"Public Library of Science","oa":1,"publist_id":"5711","date_created":"2018-12-11T11:52:17Z","file_date_updated":"2020-07-14T12:44:57Z","abstract":[{"text":"Plants have the ability to continously generate new organs by maintaining populations of stem cells throught their lives. The shoot apical meristem (SAM) provides a stable environment for the maintenance of stem cells. All cells inside the SAM divide, yet boundaries and patterns are maintained. Experimental evidence indicates that patterning is independent of cell lineage, thus a dynamic self-regulatory mechanism is required. A pivotal role in the organization of the SAM is played by the WUSCHEL gene (WUS). An important question in this regard is that how WUS expression is positioned in the SAM via a cell-lineage independent signaling mechanism. In this study we demonstrate via mathematical modeling that a combination of an inhibitor of the Cytokinin (CK) receptor, Arabidopsis histidine kinase 4 (AHK4) and two morphogens originating from the top cell layer, can plausibly account for the cell lineage-independent centering of WUS expression within SAM. Furthermore, our laser ablation and microsurgical experiments support the hypothesis that patterning in SAM occurs at the level of CK reception and signaling. The model suggests that the interplay between CK signaling, WUS/CLV feedback loop and boundary signals can account for positioning of the WUS expression, and provides directions for further experimental investigation.","lang":"eng"}],"acknowledgement":"We thank J. Traas, B. Müller and V. Reddy for providing seed materials and Y. Deb for advice regarding the laser ablation experiments. We specially thank Thomas Laux for stimulating discussions and support in the initial phase of this project.","issue":"2","volume":11,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"Adibi, Milad","last_name":"Adibi","first_name":"Milad"},{"first_name":"Saiko","last_name":"Yoshida","id":"2E46069C-F248-11E8-B48F-1D18A9856A87","full_name":"Yoshida, Saiko"},{"last_name":"Weijers","first_name":"Dolf","full_name":"Weijers, Dolf"},{"last_name":"Fleck","first_name":"Christian","full_name":"Fleck, Christian"}],"department":[{"_id":"JiFr"}],"status":"public","pubrep_id":"521","ddc":["570"]},{"citation":{"ista":"Chen X, Wu S, Liu Z, Friml J. 2016. Environmental and endogenous control of cortical microtubule orientation. Trends in Cell Biology. 26(6), 409–419.","chicago":"Chen, Xu, Shuang Wu, Zengyu Liu, and Jiří Friml. “Environmental and Endogenous Control of Cortical Microtubule Orientation.” <i>Trends in Cell Biology</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.tcb.2016.02.003\">https://doi.org/10.1016/j.tcb.2016.02.003</a>.","ama":"Chen X, Wu S, Liu Z, Friml J. Environmental and endogenous control of cortical microtubule orientation. <i>Trends in Cell Biology</i>. 2016;26(6):409-419. doi:<a href=\"https://doi.org/10.1016/j.tcb.2016.02.003\">10.1016/j.tcb.2016.02.003</a>","mla":"Chen, Xu, et al. “Environmental and Endogenous Control of Cortical Microtubule Orientation.” <i>Trends in Cell Biology</i>, vol. 26, no. 6, Cell Press, 2016, pp. 409–19, doi:<a href=\"https://doi.org/10.1016/j.tcb.2016.02.003\">10.1016/j.tcb.2016.02.003</a>.","apa":"Chen, X., Wu, S., Liu, Z., &#38; Friml, J. (2016). Environmental and endogenous control of cortical microtubule orientation. <i>Trends in Cell Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.tcb.2016.02.003\">https://doi.org/10.1016/j.tcb.2016.02.003</a>","short":"X. Chen, S. Wu, Z. Liu, J. Friml, Trends in Cell Biology 26 (2016) 409–419.","ieee":"X. Chen, S. Wu, Z. Liu, and J. Friml, “Environmental and endogenous control of cortical microtubule orientation,” <i>Trends in Cell Biology</i>, vol. 26, no. 6. Cell Press, pp. 409–419, 2016."},"file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:44:57Z","creator":"system","file_id":"5155","relation":"main_file","checksum":"b229e5bb4676ec3e27b7b9ea603b3a63","file_size":2329117,"date_created":"2018-12-12T10:15:34Z","file_name":"IST-2018-1002-v1+1_Chen_TICB_2016_proofs.pdf","access_level":"open_access"}],"isi":1,"external_id":{"isi":["000376807500004"]},"publication":"Trends in Cell Biology","day":"01","scopus_import":"1","page":"409 - 419","type":"journal_article","title":"Environmental and endogenous control of cortical microtubule orientation","oa_version":"Submitted Version","date_published":"2016-06-01T00:00:00Z","quality_controlled":"1","intvolume":"        26","month":"06","date_updated":"2025-09-18T11:35:11Z","publication_status":"published","_id":"1484","doi":"10.1016/j.tcb.2016.02.003","article_processing_charge":"No","status":"public","pubrep_id":"1002","ddc":["581"],"year":"2016","language":[{"iso":"eng"}],"author":[{"last_name":"Chen","id":"4E5ADCAA-F248-11E8-B48F-1D18A9856A87","first_name":"Xu","full_name":"Chen, Xu"},{"full_name":"Wu, Shuang","last_name":"Wu","first_name":"Shuang"},{"full_name":"Liu, Zengyu","last_name":"Liu","first_name":"Zengyu"},{"last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiřĺ","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiřĺ"}],"department":[{"_id":"JiFr"}],"acknowledgement":"We thank Maciek Adamowski for helpful discussions and Qiang Zhu and Israel Ausin for critical reading of the manuscript. We sincerely apologize to colleagues whose work we could not include owing to space limitations.","issue":"6","volume":26,"article_type":"review","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","has_accepted_license":"1","publist_id":"5704","publisher":"Cell Press","oa":1,"date_created":"2018-12-11T11:52:17Z","file_date_updated":"2020-07-14T12:44:57Z"},{"publication":"Physical Biology","day":"29","external_id":{"isi":["000371585200003"],"arxiv":["1505.04613"]},"isi":1,"citation":{"chicago":"De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of E. Coli from the Energy Balance Analysis.” <i>Physical Biology</i>. IOP Publishing, 2016. <a href=\"https://doi.org/10.1088/1478-3975/13/1/016003\">https://doi.org/10.1088/1478-3975/13/1/016003</a>.","mla":"De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of E. Coli from the Energy Balance Analysis.” <i>Physical Biology</i>, vol. 13, no. 1, 016003, IOP Publishing, 2016, doi:<a href=\"https://doi.org/10.1088/1478-3975/13/1/016003\">10.1088/1478-3975/13/1/016003</a>.","ama":"De Martino D. Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. <i>Physical Biology</i>. 2016;13(1). doi:<a href=\"https://doi.org/10.1088/1478-3975/13/1/016003\">10.1088/1478-3975/13/1/016003</a>","ista":"De Martino D. 2016. Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. Physical Biology. 13(1), 016003.","apa":"De Martino, D. (2016). Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. <i>Physical Biology</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1478-3975/13/1/016003\">https://doi.org/10.1088/1478-3975/13/1/016003</a>","short":"D. De Martino, Physical Biology 13 (2016).","ieee":"D. De Martino, “Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis,” <i>Physical Biology</i>, vol. 13, no. 1. IOP Publishing, 2016."},"oa_version":"Preprint","type":"journal_article","title":"Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis","scopus_import":"1","date_updated":"2025-09-18T11:34:17Z","publication_status":"published","_id":"1485","quality_controlled":"1","month":"01","intvolume":"        13","ec_funded":1,"date_published":"2016-01-29T00:00:00Z","article_processing_charge":"No","article_number":"016003","doi":"10.1088/1478-3975/13/1/016003","status":"public","department":[{"_id":"GaTk"}],"corr_author":"1","year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"De Martino, Daniele","orcid":"0000-0002-5214-4706","first_name":"Daniele","id":"3FF5848A-F248-11E8-B48F-1D18A9856A87","last_name":"De Martino"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":13,"arxiv":1,"issue":"1","abstract":[{"lang":"eng","text":"In this article the notion of metabolic turnover is revisited in the light of recent results of out-of-equilibrium thermodynamics. By means of Monte Carlo methods we perform an exact sampling of the enzymatic fluxes in a genome scale metabolic network of E. Coli in stationary growth conditions from which we infer the metabolites turnover times. However the latter are inferred from net fluxes, and we argue that this approximation is not valid for enzymes working nearby thermodynamic equilibrium. We recalculate turnover times from total fluxes by performing an energy balance analysis of the network and recurring to the fluctuation theorem. We find in many cases values one of order of magnitude lower, implying a faster picture of intermediate metabolism."}],"main_file_link":[{"url":"http://arxiv.org/abs/1505.04613","open_access":"1"}],"publisher":"IOP Publishing","publist_id":"5702","oa":1,"date_created":"2018-12-11T11:52:18Z","project":[{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}]},{"scopus_import":"1","type":"journal_article","title":"The Bardeen–Cooper–Schrieffer functional of superconductivity and its mathematical properties","oa_version":"Preprint","citation":{"ista":"Hainzl C, Seiringer R. 2016. The Bardeen–Cooper–Schrieffer functional of superconductivity and its mathematical properties. Journal of Mathematical Physics. 57(2), 021101.","chicago":"Hainzl, Christian, and Robert Seiringer. “The Bardeen–Cooper–Schrieffer Functional of Superconductivity and Its Mathematical Properties.” <i>Journal of Mathematical Physics</i>. American Institute of Physics, 2016. <a href=\"https://doi.org/10.1063/1.4941723\">https://doi.org/10.1063/1.4941723</a>.","ama":"Hainzl C, Seiringer R. The Bardeen–Cooper–Schrieffer functional of superconductivity and its mathematical properties. <i>Journal of Mathematical Physics</i>. 2016;57(2). doi:<a href=\"https://doi.org/10.1063/1.4941723\">10.1063/1.4941723</a>","mla":"Hainzl, Christian, and Robert Seiringer. “The Bardeen–Cooper–Schrieffer Functional of Superconductivity and Its Mathematical Properties.” <i>Journal of Mathematical Physics</i>, vol. 57, no. 2, 021101, American Institute of Physics, 2016, doi:<a href=\"https://doi.org/10.1063/1.4941723\">10.1063/1.4941723</a>.","apa":"Hainzl, C., &#38; Seiringer, R. (2016). The Bardeen–Cooper–Schrieffer functional of superconductivity and its mathematical properties. <i>Journal of Mathematical Physics</i>. American Institute of Physics. <a href=\"https://doi.org/10.1063/1.4941723\">https://doi.org/10.1063/1.4941723</a>","short":"C. Hainzl, R. Seiringer, Journal of Mathematical Physics 57 (2016).","ieee":"C. Hainzl and R. Seiringer, “The Bardeen–Cooper–Schrieffer functional of superconductivity and its mathematical properties,” <i>Journal of Mathematical Physics</i>, vol. 57, no. 2. American Institute of Physics, 2016."},"isi":1,"external_id":{"isi":["000371620000001"],"arxiv":["1511.01995"]},"day":"24","publication":"Journal of Mathematical Physics","doi":"10.1063/1.4941723","article_number":"021101","article_processing_charge":"No","date_published":"2016-02-24T00:00:00Z","intvolume":"        57","month":"02","quality_controlled":"1","_id":"1486","publication_status":"published","date_updated":"2025-09-18T11:31:30Z","author":[{"full_name":"Hainzl, Christian","last_name":"Hainzl","first_name":"Christian"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521"}],"language":[{"iso":"eng"}],"year":"2016","department":[{"_id":"RoSe"}],"status":"public","date_created":"2018-12-11T11:52:18Z","publist_id":"5701","oa":1,"publisher":"American Institute of Physics","main_file_link":[{"url":"http://arxiv.org/abs/1511.01995","open_access":"1"}],"abstract":[{"text":"We review recent results concerning the mathematical properties of the Bardeen-Cooper-Schrieffer (BCS) functional of superconductivity, which were obtained in a series of papers, partly in collaboration with R. Frank, E. Hamza, S. Naboko, and J. P. Solovej. Our discussion includes, in particular, an investigation of the critical temperature for a general class of interaction potentials, as well as a study of its dependence on external fields. We shall explain how the Ginzburg-Landau model can be derived from the BCS theory in a suitable parameter regime.","lang":"eng"}],"issue":"2","arxiv":1,"volume":57,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"article_processing_charge":"No","article_number":"e1002384","doi":"10.1371/journal.pbio.1002384","quality_controlled":"1","month":"02","intvolume":"        14","publication_status":"published","date_updated":"2025-09-18T11:30:07Z","_id":"1487","date_published":"2016-02-18T00:00:00Z","oa_version":"Published Version","scopus_import":"1","type":"journal_article","title":"Coherence between rat sensorimotor system and hippocampus is enhanced during tactile discrimination","external_id":{"isi":["000371883600015"]},"publication":"PLoS Biology","day":"18","citation":{"chicago":"Grion, Natalia, Athena Akrami, Yangfang Zuo, Federico Stella, and Mathew Diamond. “Coherence between Rat Sensorimotor System and Hippocampus Is Enhanced during Tactile Discrimination.” <i>PLoS Biology</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pbio.1002384\">https://doi.org/10.1371/journal.pbio.1002384</a>.","mla":"Grion, Natalia, et al. “Coherence between Rat Sensorimotor System and Hippocampus Is Enhanced during Tactile Discrimination.” <i>PLoS Biology</i>, vol. 14, no. 2, e1002384, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pbio.1002384\">10.1371/journal.pbio.1002384</a>.","ama":"Grion N, Akrami A, Zuo Y, Stella F, Diamond M. Coherence between rat sensorimotor system and hippocampus is enhanced during tactile discrimination. <i>PLoS Biology</i>. 2016;14(2). doi:<a href=\"https://doi.org/10.1371/journal.pbio.1002384\">10.1371/journal.pbio.1002384</a>","ista":"Grion N, Akrami A, Zuo Y, Stella F, Diamond M. 2016. Coherence between rat sensorimotor system and hippocampus is enhanced during tactile discrimination. PLoS Biology. 14(2), e1002384.","apa":"Grion, N., Akrami, A., Zuo, Y., Stella, F., &#38; Diamond, M. (2016). Coherence between rat sensorimotor system and hippocampus is enhanced during tactile discrimination. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.1002384\">https://doi.org/10.1371/journal.pbio.1002384</a>","short":"N. Grion, A. Akrami, Y. Zuo, F. Stella, M. Diamond, PLoS Biology 14 (2016).","ieee":"N. Grion, A. Akrami, Y. Zuo, F. Stella, and M. Diamond, “Coherence between rat sensorimotor system and hippocampus is enhanced during tactile discrimination,” <i>PLoS Biology</i>, vol. 14, no. 2. Public Library of Science, 2016."},"file":[{"date_updated":"2020-07-14T12:44:57Z","content_type":"application/pdf","access_level":"open_access","file_name":"IST-2016-518-v1+1_journal.pbio.1002384.PDF","date_created":"2018-12-12T10:15:11Z","file_size":2879899,"file_id":"5129","relation":"main_file","checksum":"3a5ce0d4e4e36bd6ceb4be761f85644a","creator":"system"}],"isi":1,"publist_id":"5700","oa":1,"publisher":"Public Library of Science","date_created":"2018-12-11T11:52:18Z","file_date_updated":"2020-07-14T12:44:57Z","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":14,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","abstract":[{"text":"Rhythms with time scales of multiple cycles per second permeate the mammalian brain, yet neuroscientists are not certain of their functional roles. One leading idea is that coherent oscillation between two brain regions facilitates the exchange of information between them. In rats, the hippocampus and the vibrissal sensorimotor system both are characterized by rhythmic oscillation in the theta range, 5–12 Hz. Previous work has been divided as to whether the two rhythms are independent or coherent. To resolve this question, we acquired three measures from rats—whisker motion, hippocampal local field potential (LFP), and barrel cortex unit firing—during a whisker-mediated texture discrimination task and during control conditions (not engaged in a whisker-mediated memory task). Compared to control conditions, the theta band of hippocampal LFP showed a marked increase in power as the rats approached and then palpated the texture. Phase synchronization between whisking and hippocampal LFP increased by almost 50% during approach and texture palpation. In addition, a greater proportion of barrel cortex neurons showed firing that was phase-locked to hippocampal theta while rats were engaged in the discrimination task. Consistent with a behavioral consequence of phase synchronization, the rats identified the texture more rapidly and with lower error likelihood on trials in which there was an increase in theta-whisking coherence at the moment of texture palpation. These results suggest that coherence between the whisking rhythm, barrel cortex firing, and hippocampal LFP is augmented selectively during epochs in which the rat collects sensory information and that such coherence enhances the efficiency of integration of stimulus information into memory and decision-making centers.","lang":"eng"}],"acknowledgement":"We thank Eric Maris, Demian Battaglia, and Rodrigo Quian Quiroga for useful discussions. We are grateful to Fabrizio Manzino and Marco Gigante for construction of the behavioral apparatus, Igor Perkon for developing custom whisker tracking software and to Francesca Pulecchi for animal care and histological processing.","issue":"2","department":[{"_id":"JoCs"}],"year":"2016","language":[{"iso":"eng"}],"author":[{"last_name":"Grion","first_name":"Natalia","full_name":"Grion, Natalia"},{"full_name":"Akrami, Athena","first_name":"Athena","last_name":"Akrami"},{"first_name":"Yangfang","last_name":"Zuo","full_name":"Zuo, Yangfang"},{"last_name":"Stella","id":"39AF1E74-F248-11E8-B48F-1D18A9856A87","first_name":"Federico","orcid":"0000-0001-9439-3148","full_name":"Stella, Federico"},{"full_name":"Diamond, Mathew","last_name":"Diamond","first_name":"Mathew"}],"pubrep_id":"518","ddc":["570"],"status":"public"},{"citation":{"ista":"Riccio P, Cebrián C, Zong H, Hippenmeyer S, Costantini F. 2016. Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis. PLoS Biology. 14(2), e1002382.","chicago":"Riccio, Paul, Cristina Cebrián, Hui Zong, Simon Hippenmeyer, and Frank Costantini. “Ret and Etv4 Promote Directed Movements of Progenitor Cells during Renal Branching Morphogenesis.” <i>PLoS Biology</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pbio.1002382\">https://doi.org/10.1371/journal.pbio.1002382</a>.","mla":"Riccio, Paul, et al. “Ret and Etv4 Promote Directed Movements of Progenitor Cells during Renal Branching Morphogenesis.” <i>PLoS Biology</i>, vol. 14, no. 2, e1002382, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pbio.1002382\">10.1371/journal.pbio.1002382</a>.","ama":"Riccio P, Cebrián C, Zong H, Hippenmeyer S, Costantini F. Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis. <i>PLoS Biology</i>. 2016;14(2). doi:<a href=\"https://doi.org/10.1371/journal.pbio.1002382\">10.1371/journal.pbio.1002382</a>","apa":"Riccio, P., Cebrián, C., Zong, H., Hippenmeyer, S., &#38; Costantini, F. (2016). Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.1002382\">https://doi.org/10.1371/journal.pbio.1002382</a>","short":"P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, PLoS Biology 14 (2016).","ieee":"P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, and F. Costantini, “Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis,” <i>PLoS Biology</i>, vol. 14, no. 2. Public Library of Science, 2016."},"file":[{"file_name":"IST-2016-517-v1+1_journal.pbio.1002382_1_.PDF","access_level":"open_access","date_created":"2018-12-12T10:13:42Z","file_size":5904773,"checksum":"7f8fa1b3a29f94c0a14dd4465278cdbc","relation":"main_file","file_id":"5027","creator":"system","date_updated":"2020-07-14T12:44:57Z","content_type":"application/pdf"}],"isi":1,"external_id":{"isi":["000371883600013"]},"publication":"PLoS Biology","day":"19","scopus_import":"1","title":"Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis","type":"journal_article","oa_version":"Published Version","date_published":"2016-02-19T00:00:00Z","quality_controlled":"1","intvolume":"        14","month":"02","publication_status":"published","date_updated":"2025-09-18T11:28:32Z","_id":"1488","article_number":"e1002382","doi":"10.1371/journal.pbio.1002382","article_processing_charge":"No","status":"public","pubrep_id":"517","ddc":["570"],"year":"2016","language":[{"iso":"eng"}],"author":[{"full_name":"Riccio, Paul","first_name":"Paul","last_name":"Riccio"},{"full_name":"Cebrián, Cristina","first_name":"Cristina","last_name":"Cebrián"},{"full_name":"Zong, Hui","last_name":"Zong","first_name":"Hui"},{"orcid":"0000-0003-2279-1061","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","last_name":"Hippenmeyer","first_name":"Simon"},{"last_name":"Costantini","first_name":"Frank","full_name":"Costantini, Frank"}],"department":[{"_id":"SiHi"}],"abstract":[{"lang":"eng","text":"Branching morphogenesis of the epithelial ureteric bud forms the renal collecting duct system and is critical for normal nephron number, while low nephron number is implicated in hypertension and renal disease. Ureteric bud growth and branching requires GDNF signaling from the surrounding mesenchyme to cells at the ureteric bud tips, via the Ret receptor tyrosine kinase and coreceptor Gfrα1; Ret signaling up-regulates transcription factors Etv4 and Etv5, which are also critical for branching. Despite extensive knowledge of the genetic control of these events, it is not understood, at the cellular level, how renal branching morphogenesis is achieved or how Ret signaling influences epithelial cell behaviors to promote this process. Analysis of chimeric embryos previously suggested a role for Ret signaling in promoting cell rearrangements in the nephric duct, but this method was unsuited to study individual cell behaviors during ureteric bud branching. Here, we use Mosaic Analysis with Double Markers (MADM), combined with organ culture and time-lapse imaging, to trace the movements and divisions of individual ureteric bud tip cells. We first examine wild-type clones and then Ret or Etv4 mutant/wild-type clones in which the mutant and wild-type sister cells are differentially and heritably marked by green and red fluorescent proteins. We find that, in normal kidneys, most individual tip cells behave as self-renewing progenitors, some of whose progeny remain at the tips while others populate the growing UB trunks. In Ret or Etv4 MADM clones, the wild-type cells generated at a UB tip are much more likely to remain at, or move to, the new tips during branching and elongation, while their Ret−/− or Etv4−/− sister cells tend to lag behind and contribute only to the trunks. By tracking successive mitoses in a cell lineage, we find that Ret signaling has little effect on proliferation, in contrast to its effects on cell movement. Our results show that Ret/Etv4 signaling promotes directed cell movements in the ureteric bud tips, and suggest a model in which these cell movements mediate branching morphogenesis."}],"acknowledgement":"We thank Silvia Arber, Thomas Jessell, Kenneth M. Murphy, Carlton Bates, Hideki Enomoto, Liqun Luo and Andrew McMahon for mouse strains; Thomas Jessell for antibodies; and Laura Martinez Prat for experimental assistance.","issue":"2","volume":14,"related_material":{"record":[{"id":"9703","status":"deleted","relation":"research_data"}]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publisher":"Public Library of Science","publist_id":"5699","oa":1,"date_created":"2018-12-11T11:52:19Z","file_date_updated":"2020-07-14T12:44:57Z"},{"status":"public","pubrep_id":"516","ddc":["510"],"language":[{"iso":"eng"}],"year":"2016","author":[{"id":"36F2FB7E-F248-11E8-B48F-1D18A9856A87","last_name":"Ajanki","first_name":"Oskari H","full_name":"Ajanki, Oskari H"},{"last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László","orcid":"0000-0001-5366-9603","full_name":"Erdös, László"},{"full_name":"Krüger, Torben H","orcid":"0000-0002-4821-3297","first_name":"Torben H","last_name":"Krüger","id":"3020C786-F248-11E8-B48F-1D18A9856A87"}],"corr_author":"1","department":[{"_id":"LaEr"}],"abstract":[{"lang":"eng","text":"We prove optimal local law, bulk universality and non-trivial decay for the off-diagonal elements of the resolvent for a class of translation invariant Gaussian random matrix ensembles with correlated entries. "}],"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). Oskari H. Ajanki was Partially supported by ERC Advanced Grant RANMAT No. 338804, and SFB-TR 12 Grant of the German Research Council. László Erdős was Partially supported by ERC Advanced Grant RANMAT No. 338804. Torben Krüger was Partially supported by ERC Advanced Grant RANMAT No. 338804, and SFB-TR 12 Grant of the German Research Council.","issue":"2","volume":163,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","project":[{"call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","publisher":"Springer","oa":1,"publist_id":"5698","date_created":"2018-12-11T11:52:19Z","file_date_updated":"2020-07-14T12:44:57Z","citation":{"ista":"Ajanki OH, Erdös L, Krüger TH. 2016. Local spectral statistics of Gaussian matrices with correlated entries. Journal of Statistical Physics. 163(2), 280–302.","chicago":"Ajanki, Oskari H, László Erdös, and Torben H Krüger. “Local Spectral Statistics of Gaussian Matrices with Correlated Entries.” <i>Journal of Statistical Physics</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s10955-016-1479-y\">https://doi.org/10.1007/s10955-016-1479-y</a>.","mla":"Ajanki, Oskari H., et al. “Local Spectral Statistics of Gaussian Matrices with Correlated Entries.” <i>Journal of Statistical Physics</i>, vol. 163, no. 2, Springer, 2016, pp. 280–302, doi:<a href=\"https://doi.org/10.1007/s10955-016-1479-y\">10.1007/s10955-016-1479-y</a>.","ama":"Ajanki OH, Erdös L, Krüger TH. Local spectral statistics of Gaussian matrices with correlated entries. <i>Journal of Statistical Physics</i>. 2016;163(2):280-302. doi:<a href=\"https://doi.org/10.1007/s10955-016-1479-y\">10.1007/s10955-016-1479-y</a>","apa":"Ajanki, O. H., Erdös, L., &#38; Krüger, T. H. (2016). Local spectral statistics of Gaussian matrices with correlated entries. <i>Journal of Statistical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s10955-016-1479-y\">https://doi.org/10.1007/s10955-016-1479-y</a>","short":"O.H. Ajanki, L. Erdös, T.H. Krüger, Journal of Statistical Physics 163 (2016) 280–302.","ieee":"O. H. Ajanki, L. Erdös, and T. H. Krüger, “Local spectral statistics of Gaussian matrices with correlated entries,” <i>Journal of Statistical Physics</i>, vol. 163, no. 2. Springer, pp. 280–302, 2016."},"file":[{"file_id":"4869","relation":"main_file","checksum":"7139598dcb1cafbe6866bd2bfd732b33","creator":"system","date_created":"2018-12-12T10:11:16Z","access_level":"open_access","file_name":"IST-2016-516-v1+1_s10955-016-1479-y.pdf","file_size":660602,"content_type":"application/pdf","date_updated":"2020-07-14T12:44:57Z"}],"isi":1,"external_id":{"isi":["000373132700003"]},"day":"01","publication":"Journal of Statistical Physics","scopus_import":"1","page":"280 - 302","title":"Local spectral statistics of Gaussian matrices with correlated entries","type":"journal_article","oa_version":"Published Version","ec_funded":1,"date_published":"2016-04-01T00:00:00Z","quality_controlled":"1","intvolume":"       163","month":"04","date_updated":"2025-09-18T11:17:50Z","publication_status":"published","_id":"1489","doi":"10.1007/s10955-016-1479-y","article_processing_charge":"Yes (via OA deal)"}]