[{"language":[{"iso":"eng"}],"publication":"ChemPhysChem","status":"public","page":"3649 - 3654","ec_funded":1,"department":[{"_id":"JoFi"},{"_id":"MiLe"}],"volume":17,"date_published":"2016-09-18T00:00:00Z","intvolume":"        17","title":"Libration of strongly oriented polar molecules inside a superfluid","publist_id":"6140","article_processing_charge":"No","publication_status":"published","author":[{"first_name":"Elena","id":"2C21D6E8-F248-11E8-B48F-1D18A9856A87","last_name":"Redchenko","full_name":"Redchenko, Elena"},{"first_name":"Mikhail","full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"}],"quality_controlled":"1","abstract":[{"text":"We study a polar molecule immersed in a superfluid environment, such as a helium nanodroplet or a Bose–Einstein condensate, in the presence of a strong electrostatic field. We show that coupling of the molecular pendular motion, induced by the field, to the fluctuating bath leads to formation of pendulons—spherical harmonic librators dressed by a field of many-particle excitations. We study the behavior of the pendulon in a broad range of molecule–bath and molecule–field interaction strengths, and reveal that its spectrum features a series of instabilities which are absent in the field-free case of the angulon quasiparticle. Furthermore, we show that an external field allows to fine-tune the positions of these instabilities in the molecular rotational spectrum. This opens the door to detailed experimental studies of redistribution of orbital angular momentum in many-particle systems. © 2016 Wiley-VCH Verlag GmbH &amp; Co. KGaA, Weinheim","lang":"eng"}],"day":"18","fulldoi":"https://doi.org/10.1002/cphc.201601042","issue":"22","doi":"10.1002/cphc.201601042","publisher":"Wiley-Blackwell","_id":"1206","date_updated":"2025-09-22T09:38:39Z","isi":1,"oa":1,"citation":{"mla":"Redchenko, Elena, and Mikhail Lemeshko. “Libration of Strongly Oriented Polar Molecules inside a Superfluid.” <i>ChemPhysChem</i>, vol. 17, no. 22, Wiley-Blackwell, 2016, pp. 3649–54, doi:<a href=\"https://doi.org/10.1002/cphc.201601042\">10.1002/cphc.201601042</a>.","apa":"Redchenko, E., &#38; Lemeshko, M. (2016). Libration of strongly oriented polar molecules inside a superfluid. <i>ChemPhysChem</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/cphc.201601042\">https://doi.org/10.1002/cphc.201601042</a>","ista":"Redchenko E, Lemeshko M. 2016. Libration of strongly oriented polar molecules inside a superfluid. ChemPhysChem. 17(22), 3649–3654.","ama":"Redchenko E, Lemeshko M. Libration of strongly oriented polar molecules inside a superfluid. <i>ChemPhysChem</i>. 2016;17(22):3649-3654. doi:<a href=\"https://doi.org/10.1002/cphc.201601042\">10.1002/cphc.201601042</a>","short":"E. Redchenko, M. Lemeshko, ChemPhysChem 17 (2016) 3649–3654.","chicago":"Redchenko, Elena, and Mikhail Lemeshko. “Libration of Strongly Oriented Polar Molecules inside a Superfluid.” <i>ChemPhysChem</i>. Wiley-Blackwell, 2016. <a href=\"https://doi.org/10.1002/cphc.201601042\">https://doi.org/10.1002/cphc.201601042</a>.","ieee":"E. Redchenko and M. Lemeshko, “Libration of strongly oriented polar molecules inside a superfluid,” <i>ChemPhysChem</i>, vol. 17, no. 22. Wiley-Blackwell, pp. 3649–3654, 2016."},"date_created":"2018-12-11T11:50:43Z","arxiv":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","project":[{"call_identifier":"H2020","grant_number":"665385","name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"year":"2016","external_id":{"arxiv":["1609.08161"],"isi":["000388625000008"]},"month":"09","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1609.08161"}],"scopus_import":"1","oa_version":"Preprint"},{"title":"Purification of ovine respiratory complex i results in a highly active and stable preparation","intvolume":"       291","publist_id":"6139","article_processing_charge":"No","acknowledgement":"J.A.S supported in part by a Medical Research D.G.Council UK Ph.D. fellowship.\r\nThis work was supported in part by European Union's 2020 Research and Innovation Program under Grant 701309. \r\n","author":[{"last_name":"Letts","id":"322DA418-F248-11E8-B48F-1D18A9856A87","full_name":"Letts, James A","orcid":"0000-0002-9864-3586","first_name":"James A"},{"full_name":"Degliesposti, Gianluca","last_name":"Degliesposti","first_name":"Gianluca"},{"first_name":"Karol","id":"5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0","last_name":"Fiedorczuk","full_name":"Fiedorczuk, Karol"},{"first_name":"Mark","full_name":"Skehel, Mark","last_name":"Skehel"},{"orcid":"0000-0002-0977-7989","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","full_name":"Sazanov, Leonid A","first_name":"Leonid A"}],"publication_status":"published","date_published":"2016-11-18T00:00:00Z","volume":291,"publication":"Journal of Biological Chemistry","page":"24657 - 24675","status":"public","ec_funded":1,"department":[{"_id":"LeSa"}],"language":[{"iso":"eng"}],"_id":"1209","doi":"10.1074/jbc.M116.735142","publisher":"American Society for Biochemistry and Molecular Biology","fulldoi":"https://doi.org/10.1074/jbc.M116.735142","issue":"47","quality_controlled":"1","abstract":[{"text":"NADH-ubiquinone oxidoreductase (complex I) is the largest (∼1 MDa) and the least characterized complex of the mitochondrial electron transport chain. Because of the ease of sample availability, previous work has focused almost exclusively on bovine complex I. However, only medium resolution structural analyses of this complex have been reported. Working with other mammalian complex I homologues is a potential approach for overcoming these limitations. Due to the inherent difficulty of expressing large membrane protein complexes, screening of complex I homologues is limited to large mammals reared for human consumption. The high sequence identity among these available sources may preclude the benefits of screening. Here, we report the characterization of complex I purified from Ovis aries (ovine) heart mitochondria. All 44 unique subunits of the intact complex were identified by mass spectrometry. We identified differences in the subunit composition of subcomplexes of ovine complex I as compared with bovine, suggesting differential stability of inter-subunit interactions within the complex. Furthermore, the 42-kDa subunit, which is easily lost from the bovine enzyme, remains tightly bound to ovine complex I. Additionally, we developed a novel purification protocol for highly active and stable mitochondrial complex I using the branched-chain detergent lauryl maltose neopentyl glycol. Our data demonstrate that, although closely related, significant differences exist between the biochemical properties of complex I prepared from ovine and bovine mitochondria and that ovine complex I represents a suitable alternative target for further structural studies. ","lang":"eng"}],"day":"18","date_created":"2018-12-11T11:50:44Z","oa":1,"citation":{"chicago":"Letts, James A, Gianluca Degliesposti, Karol Fiedorczuk, Mark Skehel, and Leonid A Sazanov. “Purification of Ovine Respiratory Complex i Results in a Highly Active and Stable Preparation.” <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology, 2016. <a href=\"https://doi.org/10.1074/jbc.M116.735142\">https://doi.org/10.1074/jbc.M116.735142</a>.","ieee":"J. A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, and L. A. Sazanov, “Purification of ovine respiratory complex i results in a highly active and stable preparation,” <i>Journal of Biological Chemistry</i>, vol. 291, no. 47. American Society for Biochemistry and Molecular Biology, pp. 24657–24675, 2016.","ista":"Letts JA, Degliesposti G, Fiedorczuk K, Skehel M, Sazanov LA. 2016. Purification of ovine respiratory complex i results in a highly active and stable preparation. Journal of Biological Chemistry. 291(47), 24657–24675.","mla":"Letts, James A., et al. “Purification of Ovine Respiratory Complex i Results in a Highly Active and Stable Preparation.” <i>Journal of Biological Chemistry</i>, vol. 291, no. 47, American Society for Biochemistry and Molecular Biology, 2016, pp. 24657–75, doi:<a href=\"https://doi.org/10.1074/jbc.M116.735142\">10.1074/jbc.M116.735142</a>.","apa":"Letts, J. A., Degliesposti, G., Fiedorczuk, K., Skehel, M., &#38; Sazanov, L. A. (2016). Purification of ovine respiratory complex i results in a highly active and stable preparation. <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology. <a href=\"https://doi.org/10.1074/jbc.M116.735142\">https://doi.org/10.1074/jbc.M116.735142</a>","ama":"Letts JA, Degliesposti G, Fiedorczuk K, Skehel M, Sazanov LA. Purification of ovine respiratory complex i results in a highly active and stable preparation. <i>Journal of Biological Chemistry</i>. 2016;291(47):24657-24675. doi:<a href=\"https://doi.org/10.1074/jbc.M116.735142\">10.1074/jbc.M116.735142</a>","short":"J.A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, L.A. Sazanov, Journal of Biological Chemistry 291 (2016) 24657–24675."},"date_updated":"2025-09-22T09:38:04Z","isi":1,"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5114416/"}],"scopus_import":"1","oa_version":"Submitted Version","external_id":{"isi":["000388875500026"]},"month":"11","project":[{"name":"Atomic-Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes","_id":"2593EBD6-B435-11E9-9278-68D0E5697425"},{"call_identifier":"H2020","grant_number":"701309","name":"Atomic Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes","_id":"2590DB08-B435-11E9-9278-68D0E5697425"}],"year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","type":"journal_article"},{"year":"2016","fulldoi":"https://doi.org/10.1007/978-1-4939-6469-7_1","quality_controlled":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Mechanisms for cell protection are essential for survival of multicellular organisms. In plants, the apical hook, which is transiently formed in darkness when the germinating seedling penetrates towards the soil surface, plays such protective role and shields the vitally important shoot apical meristem and cotyledons from damage. The apical hook is formed by bending of the upper hypocotyl soon after germination, and it is maintained in a closed stage while the hypocotyl continues to penetrate through the soil and rapidly opens when exposed to light in proximity of the soil surface. To uncover the complex molecular network orchestrating this spatiotemporally tightly coordinated process, monitoring of the apical hook development in real time is indispensable. Here we describe an imaging platform that enables high-resolution kinetic analysis of this dynamic developmental process. © Springer Science+Business Media New York 2017."}],"type":"book_chapter","day":"19","_id":"1210","scopus_import":1,"oa_version":"None","alternative_title":["Methods in Molecular Biology"],"doi":"10.1007/978-1-4939-6469-7_1","publisher":"Humana Press","month":"11","publication":"Plant Hormones","page":"1 - 8","date_updated":"2021-01-12T06:49:07Z","status":"public","department":[{"_id":"EvBe"}],"language":[{"iso":"eng"}],"date_created":"2018-12-11T11:50:44Z","title":"Real time analysis of the apical hook development","intvolume":"      1497","publist_id":"6135","acknowledgement":"We thank Herman  \r\nHöfte \r\n, Todor Asenov, Robert Hauschield, and \r\nMarcal  Gallemi  for  help  with  the  establishment  of  the  real-time  \r\nimaging platform and technical support. This work was supported \r\nby the Czech Science Foundation (GA13-39982S) to Eva Benková. \r\nDominique   Van   Der   Straeten   acknowledges   the   Research   \r\nFoundation  Flanders  for  fi\r\n  nancial  support  (G.0656.13N).  Dajo  \r\nSmet holds a PhD fellowship of the Research Foundation Flanders. ","author":[{"id":"40A4B9E6-F248-11E8-B48F-1D18A9856A87","full_name":"Zhu, Qiang","last_name":"Zhu","first_name":"Qiang"},{"first_name":"Petra","last_name":"Žádníková","full_name":"Žádníková, Petra"},{"last_name":"Smet","full_name":"Smet, Dajo","first_name":"Dajo"},{"full_name":"Van Der Straeten, Dominique","last_name":"Van Der Straeten","first_name":"Dominique"},{"first_name":"Eva","full_name":"Benková, Eva","last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8510-9739"}],"publication_status":"published","volume":1497,"date_published":"2016-11-19T00:00:00Z","citation":{"ama":"Zhu Q, Žádníková P, Smet D, Van Der Straeten D, Benková E. Real time analysis of the apical hook development. In: <i>Plant Hormones</i>. Vol 1497. Humana Press; 2016:1-8. doi:<a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">10.1007/978-1-4939-6469-7_1</a>","short":"Q. Zhu, P. Žádníková, D. Smet, D. Van Der Straeten, E. Benková, in:, Plant Hormones, Humana Press, 2016, pp. 1–8.","apa":"Zhu, Q., Žádníková, P., Smet, D., Van Der Straeten, D., &#38; Benková, E. (2016). Real time analysis of the apical hook development. In <i>Plant Hormones</i> (Vol. 1497, pp. 1–8). Humana Press. <a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">https://doi.org/10.1007/978-1-4939-6469-7_1</a>","mla":"Zhu, Qiang, et al. “Real Time Analysis of the Apical Hook Development.” <i>Plant Hormones</i>, vol. 1497, Humana Press, 2016, pp. 1–8, doi:<a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">10.1007/978-1-4939-6469-7_1</a>.","ista":"Zhu Q, Žádníková P, Smet D, Van Der Straeten D, Benková E. 2016.Real time analysis of the apical hook development. In: Plant Hormones. Methods in Molecular Biology, vol. 1497, 1–8.","ieee":"Q. Zhu, P. Žádníková, D. Smet, D. Van Der Straeten, and E. Benková, “Real time analysis of the apical hook development,” in <i>Plant Hormones</i>, vol. 1497, Humana Press, 2016, pp. 1–8.","chicago":"Zhu, Qiang, Petra Žádníková, Dajo Smet, Dominique Van Der Straeten, and Eva Benková. “Real Time Analysis of the Apical Hook Development.” In <i>Plant Hormones</i>, 1497:1–8. Humana Press, 2016. <a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">https://doi.org/10.1007/978-1-4939-6469-7_1</a>."}},{"date_created":"2018-12-11T11:50:44Z","file":[{"file_name":"IST-2018-1008-v1+1_Rakusova_CurrBiol_2016_proof.pdf","file_id":"4757","date_updated":"2020-07-14T12:44:39Z","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_size":5391923,"date_created":"2018-12-12T10:09:33Z","creator":"system","checksum":"79ed2498185a027cf51a8f88100379e6"}],"oa":1,"citation":{"ama":"Rakusová H, Abbas M, Han H, Song S, Robert H, Friml J. Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity. <i>Current Biology</i>. 2016;26(22):3026-3032. doi:<a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">10.1016/j.cub.2016.08.067</a>","short":"H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, J. Friml, Current Biology 26 (2016) 3026–3032.","ista":"Rakusová H, Abbas M, Han H, Song S, Robert H, Friml J. 2016. Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity. Current Biology. 26(22), 3026–3032.","apa":"Rakusová, H., Abbas, M., Han, H., Song, S., Robert, H., &#38; Friml, J. (2016). Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">https://doi.org/10.1016/j.cub.2016.08.067</a>","mla":"Rakusová, Hana, et al. “Termination of Shoot Gravitropic Responses by Auxin Feedback on PIN3 Polarity.” <i>Current Biology</i>, vol. 26, no. 22, Cell Press, 2016, pp. 3026–32, doi:<a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">10.1016/j.cub.2016.08.067</a>.","ieee":"H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, and J. Friml, “Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity,” <i>Current Biology</i>, vol. 26, no. 22. Cell Press, pp. 3026–3032, 2016.","chicago":"Rakusová, Hana, Mohamad Abbas, Huibin Han, Siyuan Song, Hélène Robert, and Jiří Friml. “Termination of Shoot Gravitropic Responses by Auxin Feedback on PIN3 Polarity.” <i>Current Biology</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">https://doi.org/10.1016/j.cub.2016.08.067</a>."},"isi":1,"date_updated":"2026-04-28T08:29:26Z","ddc":["581"],"scopus_import":"1","pubrep_id":"1008","oa_version":"Submitted Version","month":"11","external_id":{"isi":["000388545900020"]},"year":"2016","project":[{"call_identifier":"FP7","name":"Polarity and subcellular dynamics in plants","grant_number":"282300","_id":"25716A02-B435-11E9-9278-68D0E5697425"}],"type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"first_name":"Hana","last_name":"Rakusová","full_name":"Rakusová, Hana"},{"last_name":"Abbas","full_name":"Abbas, Mohamad","id":"47E8FC1C-F248-11E8-B48F-1D18A9856A87","first_name":"Mohamad"},{"first_name":"Huibin","full_name":"Han, Huibin","id":"31435098-F248-11E8-B48F-1D18A9856A87","last_name":"Han"},{"first_name":"Siyuan","full_name":"Song, Siyuan","last_name":"Song"},{"last_name":"Robert","full_name":"Robert, Hélène","first_name":"Hélène"},{"last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí"}],"publication_status":"published","intvolume":"        26","title":"Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity","article_processing_charge":"No","publist_id":"6138","acknowledgement":"We thank Dr. Jie Li (Key Laboratory of Plant Molecular Physiology, Chinese Academy of Science, China) for the pPIN3::PIN3-GFP/DII::VENUS line and Martine De Cock for help in preparing the manuscript. This work was supported by the European Research Council (project ERC-2011-StG-20101109-PSDP), by the Czech Science Foundation GAČR (GA13-40637S) to J.F., and by the Ministry of Education, Youth and Sports of the Czech Republic under the project CEITEC 2020 (LQ1601) to H.S.R. H.R. is indebted to the Agency for Innovation by Science and Technology (IWT) for a predoctoral fellowship.\r\n","volume":26,"date_published":"2016-11-21T00:00:00Z","ec_funded":1,"department":[{"_id":"JiFr"}],"publication":"Current Biology","page":"3026 - 3032","status":"public","language":[{"iso":"eng"}],"_id":"1212","doi":"10.1016/j.cub.2016.08.067","file_date_updated":"2020-07-14T12:44:39Z","publisher":"Cell Press","has_accepted_license":"1","fulldoi":"https://doi.org/10.1016/j.cub.2016.08.067","issue":"22","abstract":[{"lang":"eng","text":"Plants adjust their growth according to gravity. Gravitropism involves gravity perception, signal transduction, and asymmetric growth response, with organ bending as a consequence [1]. Asymmetric growth results from the asymmetric distribution of the plant-specific signaling molecule auxin [2] that is generated by lateral transport, mediated in the hypocotyl predominantly by the auxin transporter PIN-FORMED3 (PIN3) [3–5]. Gravity stimulation polarizes PIN3 to the bottom sides of endodermal cells, correlating with increased auxin accumulation in adjacent tissues at the lower side of the stimulated organ, where auxin induces cell elongation and, hence, organ bending. A curvature response allows the hypocotyl to resume straight growth at a defined angle [6], implying that at some point auxin symmetry is restored to prevent overbending. Here, we present initial insights into cellular and molecular mechanisms that lead to the termination of the tropic response. We identified an auxin feedback on PIN3 polarization as underlying mechanism that restores symmetry of the PIN3-dependent auxin flow. Thus, two mechanistically distinct PIN3 polarization events redirect auxin fluxes at different time points of the gravity response: first, gravity-mediated redirection of PIN3-mediated auxin flow toward the lower hypocotyl side, where auxin gradually accumulates and promotes growth, and later PIN3 polarization to the opposite cell side, depleting this auxin maximum to end the bending. Accordingly, genetic or pharmacological interference with the late PIN3 polarization prevents termination of the response and leads to hypocotyl overbending. This observation reveals a role of auxin feedback on PIN polarity in the termination of the tropic response. © 2016 Elsevier Ltd"}],"day":"21","quality_controlled":"1"},{"scopus_import":1,"_id":"1214","oa_version":"None","month":"11","doi":"10.1109/IROS.2016.7759138","publisher":"IEEE","conference":{"end_date":"2016-09-14","name":"IEEE RSJ International Conference on Intelligent Robots and Systems IROS ","start_date":"2016-09-09","location":"Daejeon, Korea"},"fulldoi":"https://doi.org/10.1109/IROS.2016.7759138","year":"2016","type":"conference","abstract":[{"lang":"eng","text":"With the accelerated development of robot technologies, optimal control becomes one of the central themes of research. In traditional approaches, the controller, by its internal functionality, finds appropriate actions on the basis of the history of sensor values, guided by the goals, intentions, objectives, learning schemes, and so forth. While very successful with classical robots, these methods run into severe difficulties when applied to soft robots, a new field of robotics with large interest for human-robot interaction. We claim that a novel controller paradigm opens new perspective for this field. This paper applies a recently developed neuro controller with differential extrinsic synaptic plasticity to a muscle-tendon driven arm-shoulder system from the Myorobotics toolkit. In the experiments, we observe a vast variety of self-organized behavior patterns: when left alone, the arm realizes pseudo-random sequences of different poses. By applying physical forces, the system can be entrained into definite motion patterns like wiping a table. Most interestingly, after attaching an object, the controller gets in a functional resonance with the object's internal dynamics, starting to shake spontaneously bottles half-filled with water or sensitively driving an attached pendulum into a circular mode. When attached to the crank of a wheel the neural system independently develops to rotate it. In this way, the robot discovers affordances of objects its body is interacting with."}],"day":"28","quality_controlled":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publication_status":"published","author":[{"id":"3A276B68-F248-11E8-B48F-1D18A9856A87","last_name":"Martius","full_name":"Martius, Georg S","first_name":"Georg S"},{"first_name":"Raphael","last_name":"Hostettler","full_name":"Hostettler, Raphael"},{"full_name":"Knoll, Alois","last_name":"Knoll","first_name":"Alois"},{"first_name":"Ralf","last_name":"Der","full_name":"Der, Ralf"}],"date_created":"2018-12-11T11:50:45Z","title":"Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm","acknowledgement":"RD thanks for the hospitality at the Max-Planck-Institute and for helpful discussions with Nihat Ay and Keyan Zahedi.","publist_id":"6121","volume":"2016-November","date_published":"2016-11-28T00:00:00Z","citation":{"chicago":"Martius, Georg S, Raphael Hostettler, Alois Knoll, and Ralf Der. “Compliant Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic Arm,” Vol. 2016–November. IEEE, 2016. <a href=\"https://doi.org/10.1109/IROS.2016.7759138\">https://doi.org/10.1109/IROS.2016.7759138</a>.","ieee":"G. S. Martius, R. Hostettler, A. Knoll, and R. Der, “Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm,” presented at the IEEE RSJ International Conference on Intelligent Robots and Systems IROS , Daejeon, Korea, 2016, vol. 2016–November.","mla":"Martius, Georg S., et al. <i>Compliant Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic Arm</i>. Vol. 2016–November, 7759138, IEEE, 2016, doi:<a href=\"https://doi.org/10.1109/IROS.2016.7759138\">10.1109/IROS.2016.7759138</a>.","apa":"Martius, G. S., Hostettler, R., Knoll, A., &#38; Der, R. (2016). Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm (Vol. 2016–November). Presented at the IEEE RSJ International Conference on Intelligent Robots and Systems IROS , Daejeon, Korea: IEEE. <a href=\"https://doi.org/10.1109/IROS.2016.7759138\">https://doi.org/10.1109/IROS.2016.7759138</a>","ista":"Martius GS, Hostettler R, Knoll A, Der R. 2016. Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm. IEEE RSJ International Conference on Intelligent Robots and Systems IROS  vol. 2016–November, 7759138.","ama":"Martius GS, Hostettler R, Knoll A, Der R. Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm. In: Vol 2016-November. IEEE; 2016. doi:<a href=\"https://doi.org/10.1109/IROS.2016.7759138\">10.1109/IROS.2016.7759138</a>","short":"G.S. Martius, R. Hostettler, A. Knoll, R. Der, in:, IEEE, 2016."},"department":[{"_id":"ChLa"},{"_id":"GaTk"}],"article_number":"7759138","status":"public","date_updated":"2021-01-12T06:49:08Z","language":[{"iso":"eng"}]},{"year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","main_file_link":[{"url":"http://am.ippt.pan.pl/am/article/viewFile/v68p55/pdf","open_access":"1"}],"scopus_import":"1","oa_version":"Published Version","month":"01","date_updated":"2026-06-18T17:23:52Z","ddc":["500"],"date_created":"2018-12-11T11:50:46Z","oa":1,"citation":{"chicago":"Kasten, Jens, Jan Reininghaus, Ingrid Hotz, Hans Hege, Bernd Noack, Guillaume Daviller, and Marek Morzyński. “Acceleration Feature Points of Unsteady Shear Flows.” <i>Archives of Mechanics</i>. Polish Academy of Sciences Publishing House, 2016.","ieee":"J. Kasten <i>et al.</i>, “Acceleration feature points of unsteady shear flows,” <i>Archives of Mechanics</i>, vol. 68, no. 1. Polish Academy of Sciences Publishing House, pp. 55–80, 2016.","mla":"Kasten, Jens, et al. “Acceleration Feature Points of Unsteady Shear Flows.” <i>Archives of Mechanics</i>, vol. 68, no. 1, Polish Academy of Sciences Publishing House, 2016, pp. 55–80.","apa":"Kasten, J., Reininghaus, J., Hotz, I., Hege, H., Noack, B., Daviller, G., &#38; Morzyński, M. (2016). Acceleration feature points of unsteady shear flows. <i>Archives of Mechanics</i>. Polish Academy of Sciences Publishing House.","ista":"Kasten J, Reininghaus J, Hotz I, Hege H, Noack B, Daviller G, Morzyński M. 2016. Acceleration feature points of unsteady shear flows. Archives of Mechanics. 68(1), 55–80.","ama":"Kasten J, Reininghaus J, Hotz I, et al. Acceleration feature points of unsteady shear flows. <i>Archives of Mechanics</i>. 2016;68(1):55-80.","short":"J. Kasten, J. Reininghaus, I. Hotz, H. Hege, B. Noack, G. Daviller, M. Morzyński, Archives of Mechanics 68 (2016) 55–80."},"issue":"1","quality_controlled":"1","abstract":[{"lang":"eng","text":"A framework fo r extracting features in 2D transient flows, based on the acceleration field to ensure Galilean invariance is proposed in this paper. The minima of the acceleration magnitude (a superset of acceleration zeros) are extracted and discriminated into vortices and saddle points, based on the spectral properties of the velocity Jacobian. The extraction of topological features is performed with purely combinatorial algorithms from discrete computational topology. The feature points are prioritized with persistence, as a physically meaningful importance measure. These feature points are tracked in time with a robust algorithm for tracking features. Thus, a space-time hierarchy of the minima is built and vortex merging events are detected. We apply the acceleration feature extraction strategy to three two-dimensional shear flows: (1) an incompressible periodic cylinder wake, (2) an incompressible planar mixing layer and (3) a weakly compressible planar jet. The vortex-like acceleration feature points are shown to be well aligned with acceleration zeros, maxima of the vorticity magnitude, minima of the pressure field and minima of λ2."}],"day":"01","_id":"1216","publisher":"Polish Academy of Sciences Publishing House","publication":"Archives of Mechanics","page":"55 - 80","status":"public","department":[{"_id":"HeEd"}],"language":[{"iso":"eng"}],"intvolume":"        68","title":"Acceleration feature points of unsteady shear flows","article_processing_charge":"No","publist_id":"6118","acknowledgement":"The authors acknowledge funding of the German Re-\r\nsearch  Foundation  (DFG)  via  the  Collaborative  Re-\r\nsearch  Center  (SFB  557)  \\Control  of  Complex  Turbu-\r\nlent  Shear  Flows\"  and  the  Emmy  Noether  Program.\r\nFurther  funding  was  provided  by  the  Zuse  Institute\r\nBerlin  (ZIB),  the  DFG-CNRS  research  group  \\Noise\r\nGeneration in Turbulent Flows\" (2003{2010), the Chaire\r\nd'Excellence 'Closed-loop control of turbulent shear  ows\r\nusing reduced-order models' (TUCOROM) of the French\r\nAgence Nationale de la Recherche (ANR), and the Eu-\r\nropean  Social  Fund  (ESF  App.   No.   100098251).   We\r\nthank  the  Ambrosys  Ltd.  Society  for  Complex  Sys-\r\ntems  Management  and  the  Bernd  R.  Noack  Cybernet-\r\nics  Foundation  for  additional  support.   A  part  of  this\r\nwork was performed using HPC resources from GENCI-[CCRT/CINES/IDRIS]  supported  by  the  Grant  2011-\r\n[x2011020912","publication_status":"published","author":[{"first_name":"Jens","full_name":"Kasten, Jens","last_name":"Kasten"},{"last_name":"Reininghaus","full_name":"Reininghaus, Jan","id":"4505473A-F248-11E8-B48F-1D18A9856A87","first_name":"Jan"},{"last_name":"Hotz","full_name":"Hotz, Ingrid","first_name":"Ingrid"},{"first_name":"Hans","full_name":"Hege, Hans","last_name":"Hege"},{"full_name":"Noack, Bernd","last_name":"Noack","first_name":"Bernd"},{"first_name":"Guillaume","last_name":"Daviller","full_name":"Daviller, Guillaume"},{"first_name":"Marek","last_name":"Morzyński","full_name":"Morzyński, Marek"}],"volume":68,"date_published":"2016-01-01T00:00:00Z"},{"type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2016","month":"01","external_id":{"isi":["000367628600005"]},"scopus_import":"1","oa_version":"None","isi":1,"date_updated":"2025-09-22T09:34:26Z","citation":{"chicago":"Sreeramkumar, Vinatha, Miroslav Hons, Carmen Punzón, Jens Stein, David Sancho, Manuel Fresno Forcelledo, and Natalia Cuesta. “Efficient T-Cell Priming and Activation Requires Signaling through Prostaglandin E2 (EP) Receptors.” <i>Immunology and Cell Biology</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/icb.2015.62\">https://doi.org/10.1038/icb.2015.62</a>.","ieee":"V. Sreeramkumar <i>et al.</i>, “Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors,” <i>Immunology and Cell Biology</i>, vol. 94, no. 1. Nature Publishing Group, pp. 39–51, 2016.","ista":"Sreeramkumar V, Hons M, Punzón C, Stein J, Sancho D, Fresno Forcelledo M, Cuesta N. 2016. Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors. Immunology and Cell Biology. 94(1), 39–51.","apa":"Sreeramkumar, V., Hons, M., Punzón, C., Stein, J., Sancho, D., Fresno Forcelledo, M., &#38; Cuesta, N. (2016). Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors. <i>Immunology and Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/icb.2015.62\">https://doi.org/10.1038/icb.2015.62</a>","mla":"Sreeramkumar, Vinatha, et al. “Efficient T-Cell Priming and Activation Requires Signaling through Prostaglandin E2 (EP) Receptors.” <i>Immunology and Cell Biology</i>, vol. 94, no. 1, Nature Publishing Group, 2016, pp. 39–51, doi:<a href=\"https://doi.org/10.1038/icb.2015.62\">10.1038/icb.2015.62</a>.","ama":"Sreeramkumar V, Hons M, Punzón C, et al. Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors. <i>Immunology and Cell Biology</i>. 2016;94(1):39-51. doi:<a href=\"https://doi.org/10.1038/icb.2015.62\">10.1038/icb.2015.62</a>","short":"V. Sreeramkumar, M. Hons, C. Punzón, J. Stein, D. Sancho, M. Fresno Forcelledo, N. Cuesta, Immunology and Cell Biology 94 (2016) 39–51."},"date_created":"2018-12-11T11:50:46Z","abstract":[{"lang":"eng","text":"Understanding the regulation of T-cell responses during inflammation and auto-immunity is fundamental for designing efficient therapeutic strategies against immune diseases. In this regard, prostaglandin E 2 (PGE 2) is mostly considered a myeloid-derived immunosuppressive molecule. We describe for the first time that T cells secrete PGE 2 during T-cell receptor stimulation. In addition, we show that autocrine PGE 2 signaling through EP receptors is essential for optimal CD4 + T-cell activation in vitro and in vivo, and for T helper 1 (Th1) and regulatory T cell differentiation. PGE 2 was found to provide additive co-stimulatory signaling through AKT activation. Intravital multiphoton microscopy showed that triggering EP receptors in T cells is also essential for the stability of T cell-dendritic cell (DC) interactions and Th-cell accumulation in draining lymph nodes (LNs) during inflammation. We further demonstrated that blocking EP receptors in T cells during the initial phase of collagen-induced arthritis in mice resulted in a reduction of clinical arthritis. This could be attributable to defective T-cell activation, accompanied by a decline in activated and interferon-γ-producing CD4 + Th1 cells in draining LNs. In conclusion, we prove that T lymphocytes secret picomolar concentrations of PGE 2, which in turn provide additive co-stimulatory signaling, enabling T cells to attain a favorable activation threshold. PGE 2 signaling in T cells is also required for maintaining long and stable interactions with DCs within LNs. Blockade of EP receptors in vivo impairs T-cell activation and development of T cell-mediated inflammatory responses. This may have implications in various pathophysiological settings."}],"day":"01","quality_controlled":"1","fulldoi":"https://doi.org/10.1038/icb.2015.62","issue":"1","doi":"10.1038/icb.2015.62","publisher":"Nature Publishing Group","_id":"1217","language":[{"iso":"eng"}],"department":[{"_id":"MiSi"}],"publication":"Immunology and Cell Biology","status":"public","page":"39 - 51","date_published":"2016-01-01T00:00:00Z","volume":94,"author":[{"full_name":"Sreeramkumar, Vinatha","last_name":"Sreeramkumar","first_name":"Vinatha"},{"full_name":"Hons, Miroslav","last_name":"Hons","orcid":"0000-0002-6625-3348","id":"4167FE56-F248-11E8-B48F-1D18A9856A87","first_name":"Miroslav"},{"full_name":"Punzón, Carmen","last_name":"Punzón","first_name":"Carmen"},{"first_name":"Jens","full_name":"Stein, Jens","last_name":"Stein"},{"first_name":"David","full_name":"Sancho, David","last_name":"Sancho"},{"first_name":"Manuel","last_name":"Fresno Forcelledo","full_name":"Fresno Forcelledo, Manuel"},{"first_name":"Natalia","full_name":"Cuesta, Natalia","last_name":"Cuesta"}],"publication_status":"published","title":"Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors","intvolume":"        94","publist_id":"6116","article_processing_charge":"No","acknowledgement":"This manuscript has been supported by grants SAF2007-61716 and S-SAL-0159/2006 awarded by the Spanish Ministry of Science and Education and the Community of Madrid to Dr M Fresno."},{"external_id":{"isi":["000379345100012"]},"month":"07","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959195/"}],"oa_version":"Submitted Version","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","year":"2016","citation":{"chicago":"Angermayr, Andreas, Pascal Van Alphen, Dicle Hasdemir, Gertjan Kramer, Muzamal Iqbal, Wilmar Van Grondelle, Huub Hoefsloot, Younghae Choi, and Klaas Hellingwerf. “Culturing Synechocystis Sp. Strain Pcc 6803 with N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs.” <i>Applied and Environmental Microbiology</i>. American Society for Microbiology, 2016. <a href=\"https://doi.org/10.1128/AEM.00256-16\">https://doi.org/10.1128/AEM.00256-16</a>.","ieee":"A. Angermayr <i>et al.</i>, “Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs,” <i>Applied and Environmental Microbiology</i>, vol. 82, no. 14. American Society for Microbiology, pp. 4180–4189, 2016.","ista":"Angermayr A, Van Alphen P, Hasdemir D, Kramer G, Iqbal M, Van Grondelle W, Hoefsloot H, Choi Y, Hellingwerf K. 2016. Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs. Applied and Environmental Microbiology. 82(14), 4180–4189.","mla":"Angermayr, Andreas, et al. “Culturing Synechocystis Sp. Strain Pcc 6803 with N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs.” <i>Applied and Environmental Microbiology</i>, vol. 82, no. 14, American Society for Microbiology, 2016, pp. 4180–89, doi:<a href=\"https://doi.org/10.1128/AEM.00256-16\">10.1128/AEM.00256-16</a>.","apa":"Angermayr, A., Van Alphen, P., Hasdemir, D., Kramer, G., Iqbal, M., Van Grondelle, W., … Hellingwerf, K. (2016). Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs. <i>Applied and Environmental Microbiology</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/AEM.00256-16\">https://doi.org/10.1128/AEM.00256-16</a>","short":"A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle, H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology 82 (2016) 4180–4189.","ama":"Angermayr A, Van Alphen P, Hasdemir D, et al. Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs. <i>Applied and Environmental Microbiology</i>. 2016;82(14):4180-4189. doi:<a href=\"https://doi.org/10.1128/AEM.00256-16\">10.1128/AEM.00256-16</a>"},"oa":1,"date_created":"2018-12-11T11:50:46Z","date_updated":"2025-09-22T09:35:22Z","isi":1,"publisher":"American Society for Microbiology","doi":"10.1128/AEM.00256-16","_id":"1218","quality_controlled":"1","day":"01","abstract":[{"lang":"eng","text":"Investigating the physiology of cyanobacteria cultured under a diel light regime is relevant for a better understanding of the resulting growth characteristics and for specific biotechnological applications that are foreseen for these photosynthetic organisms. Here, we present the results of a multiomics study of the model cyanobacterium Synechocystis sp. strain PCC 6803, cultured in a lab-scale photobioreactor in physiological conditions relevant for large-scale culturing. The culture was sparged withN2 andCO2, leading to an anoxic environment during the dark period. Growth followed the availability of light. Metabolite analysis performed with 1Hnuclear magnetic resonance analysis showed that amino acids involved in nitrogen and sulfur assimilation showed elevated levels in the light. Most protein levels, analyzed through mass spectrometry, remained rather stable. However, several high-light-response proteins and stress-response proteins showed distinct changes at the onset of the light period. Microarray-based transcript analysis found common patterns of~56% of the transcriptome following the diel regime. These oscillating transcripts could be grouped coarsely into genes that were upregulated and downregulated in the dark period. The accumulated glycogen was degraded in the anaerobic environment in the dark. A small part was degraded gradually, reflecting basic maintenance requirements of the cells in darkness. Surprisingly, the largest part was degraded rapidly in a short time span at the end of the dark period. This degradation could allow rapid formation of metabolic intermediates at the end of the dark period, preparing the cells for the resumption of growth at the start of the light period."}],"fulldoi":"https://doi.org/10.1128/AEM.00256-16","issue":"14","date_published":"2016-07-01T00:00:00Z","volume":82,"acknowledgement":"Dutch Ministry of Economic Affairs, Agriculture, and Innovation through the program BioSolar CellsS. Andreas Angermayr,Pascal van Alphen, Klaas J. Hellingwerf\r\nWe thank Naira Quintana (presently at Rousselot, Belgium) for the ini-\r\ntiative  at  the  10th  Cyanobacterial  Molecular  Biology  Workshop\r\n(CMBW), June 2010, Lake Arrowhead, Los Angeles, CA, USA, to start the\r\ncollaborative endeavor reported here. We thank Timo Maarleveld from\r\nCWI/VU (Amsterdam) for a custom-made Python script handling the output from the NMR analysis and for evaluating and visualizing the\r\nseparate metabolites for their evaluation. We thank Rob Verpoorte from\r\nLeiden University (metabolome analysis) and Hans Aerts from the AMC\r\n(proteome analysis) for lab space and equipment. We thank Robert Leh-\r\nmann (Humboldt University Berlin) and Ilka Axmann (University of\r\nDüsseldorf) for sharing the R-code for the LOS transformation of the\r\ntranscript data. We thank Hans C. P. Matthijs from IBED for inspiring\r\ndialogues and insightful thoughts on continuous culturing of cyanobac-\r\nteria. We thank Sandra Waaijenborg for performing the transcript nor-\r\nmalization and Johan Westerhuis from BDA, Jeroen van der Steen and\r\nFilipe Branco dos Santos from MMP, and Lucas Stal from IBED/NIOZ for\r\nhelpful discussions. We thank Milou Schuurmans from MMP for help\r\nwith sampling and glycogen determination. We thank the members of the\r\nRNA Biology & Applied Bioinformatics group at SILS, in particular Selina\r\nvan Leeuwen, Elisa Hoekstra, and Martijs Jonker, for the microarray anal-\r\nysis. We thank the reviewers of this work for their insightful comments\r\nwhich improved the quality of the manuscript. This work, including the efforts of S. Andreas Angermayr, Pascal van\r\nAlphen, and Klaas J. Hellingwerf, was funded by Dutch Ministry of Eco-\r\nnomic Affairs, Agriculture, and Innovation through the program BioSolar\r\nCells.","article_processing_charge":"No","publist_id":"6117","intvolume":"        82","title":"Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs","publication_status":"published","author":[{"first_name":"Andreas","full_name":"Angermayr, Andreas","id":"4677C796-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8619-2223","last_name":"Angermayr"},{"full_name":"Van Alphen, Pascal","last_name":"Van Alphen","first_name":"Pascal"},{"first_name":"Dicle","full_name":"Hasdemir, Dicle","last_name":"Hasdemir"},{"full_name":"Kramer, Gertjan","last_name":"Kramer","first_name":"Gertjan"},{"last_name":"Iqbal","full_name":"Iqbal, Muzamal","first_name":"Muzamal"},{"first_name":"Wilmar","full_name":"Van Grondelle, Wilmar","last_name":"Van Grondelle"},{"first_name":"Huub","last_name":"Hoefsloot","full_name":"Hoefsloot, Huub"},{"first_name":"Younghae","last_name":"Choi","full_name":"Choi, Younghae"},{"last_name":"Hellingwerf","full_name":"Hellingwerf, Klaas","first_name":"Klaas"}],"language":[{"iso":"eng"}],"status":"public","page":"4180 - 4189","publication":"Applied and Environmental Microbiology","department":[{"_id":"ToBo"}]},{"publist_id":"6115","acknowledgement":"J.C. was supported in part by National Research Foundation of Korea Grant 2011-0013474 and TJ Park Junior Faculty Fellowship.\r\nK.S. was supported by ERC Advanced Grant RANMAT, No. 338804, and the \"Fund for Math.\"\r\nB.S. was supported by NSF GRFP Fellowship DGE-1144152.\r\nH.Y. was supported in part by NSF Grant DMS-13-07444 and Simons investigator fellowship. We thank Paul Bourgade, László Erd ̋os and Antti Knowles for helpful comments. We are grateful to the Taida Institute for Mathematical\r\nSciences and National Taiwan Universality for their hospitality during part of this\r\nresearch. We thank Thomas Spencer and the Institute for Advanced Study for their\r\nhospitality during the academic year 2013–2014.  ","article_processing_charge":"No","title":"Bulk universality for deformed wigner matrices","intvolume":"        44","publication_status":"published","author":[{"full_name":"Lee, Jioon","last_name":"Lee","first_name":"Jioon"},{"first_name":"Kevin","full_name":"Schnelli, Kevin","id":"434AD0AE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0954-3231","last_name":"Schnelli"},{"first_name":"Ben","last_name":"Stetler","full_name":"Stetler, Ben"},{"full_name":"Yau, Horngtzer","last_name":"Yau","first_name":"Horngtzer"}],"volume":44,"date_published":"2016-01-01T00:00:00Z","status":"public","page":"2349 - 2425","publication":"Annals of Probability","department":[{"_id":"LaEr"}],"ec_funded":1,"language":[{"iso":"eng"}],"_id":"1219","publisher":"Institute of Mathematical Statistics","doi":"10.1214/15-AOP1023","issue":"3","fulldoi":"https://doi.org/10.1214/15-AOP1023","quality_controlled":"1","day":"01","abstract":[{"text":"We consider N×N random matrices of the form H = W + V where W is a real symmetric or complex Hermitian Wigner matrix and V is a random or deterministic, real, diagonal matrix whose entries are independent of W. We assume subexponential decay for the matrix entries of W, and we choose V so that the eigenvalues ofW and V are typically of the same order. For a large class of diagonal matrices V , we show that the local statistics in the bulk of the spectrum are universal in the limit of large N.","lang":"eng"}],"date_created":"2018-12-11T11:50:47Z","arxiv":1,"citation":{"short":"J. Lee, K. Schnelli, B. Stetler, H. Yau, Annals of Probability 44 (2016) 2349–2425.","ama":"Lee J, Schnelli K, Stetler B, Yau H. Bulk universality for deformed wigner matrices. <i>Annals of Probability</i>. 2016;44(3):2349-2425. doi:<a href=\"https://doi.org/10.1214/15-AOP1023\">10.1214/15-AOP1023</a>","ista":"Lee J, Schnelli K, Stetler B, Yau H. 2016. Bulk universality for deformed wigner matrices. Annals of Probability. 44(3), 2349–2425.","mla":"Lee, Jioon, et al. “Bulk Universality for Deformed Wigner Matrices.” <i>Annals of Probability</i>, vol. 44, no. 3, Institute of Mathematical Statistics, 2016, pp. 2349–425, doi:<a href=\"https://doi.org/10.1214/15-AOP1023\">10.1214/15-AOP1023</a>.","apa":"Lee, J., Schnelli, K., Stetler, B., &#38; Yau, H. (2016). Bulk universality for deformed wigner matrices. <i>Annals of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/15-AOP1023\">https://doi.org/10.1214/15-AOP1023</a>","ieee":"J. Lee, K. Schnelli, B. Stetler, and H. Yau, “Bulk universality for deformed wigner matrices,” <i>Annals of Probability</i>, vol. 44, no. 3. Institute of Mathematical Statistics, pp. 2349–2425, 2016.","chicago":"Lee, Jioon, Kevin Schnelli, Ben Stetler, and Horngtzer Yau. “Bulk Universality for Deformed Wigner Matrices.” <i>Annals of Probability</i>. Institute of Mathematical Statistics, 2016. <a href=\"https://doi.org/10.1214/15-AOP1023\">https://doi.org/10.1214/15-AOP1023</a>."},"oa":1,"date_updated":"2025-09-22T09:33:43Z","isi":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1405.6634"}],"oa_version":"Preprint","scopus_import":"1","external_id":{"arxiv":["1405.6634"],"isi":["000376180700016"]},"month":"01","year":"2016","project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"338804","name":"Random matrices, universality and disordered quantum systems"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article"},{"publist_id":"6114","date_created":"2018-12-11T11:50:47Z","title":"Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency","publication_status":"published","author":[{"first_name":"Gregor","last_name":"Mikić","full_name":"Mikić, Gregor"},{"first_name":"Alex","full_name":"Stoll, Alex","last_name":"Stoll"},{"full_name":"Bevirt, Joe","last_name":"Bevirt","first_name":"Joe"},{"first_name":"Rok","orcid":"0000-0003-2539-3560","full_name":"Grah, Rok","id":"483E70DE-F248-11E8-B48F-1D18A9856A87","last_name":"Grah"},{"first_name":"Mark","full_name":"Moore, Mark","last_name":"Moore"}],"citation":{"ista":"Mikić G, Stoll A, Bevirt J, Grah R, Moore M. 2016. Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency. AIAA: Aviation Technology, Integration, and Operations Conference, 1–19.","mla":"Mikić, Gregor, et al. <i>Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency</i>. AIAA, 2016, pp. 1–19, doi:<a href=\"https://doi.org/10.2514/6.2016-3764\">10.2514/6.2016-3764</a>.","apa":"Mikić, G., Stoll, A., Bevirt, J., Grah, R., &#38; Moore, M. (2016). Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency (pp. 1–19). Presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA: AIAA. <a href=\"https://doi.org/10.2514/6.2016-3764\">https://doi.org/10.2514/6.2016-3764</a>","ama":"Mikić G, Stoll A, Bevirt J, Grah R, Moore M. Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency. In: AIAA; 2016:1-19. doi:<a href=\"https://doi.org/10.2514/6.2016-3764\">10.2514/6.2016-3764</a>","short":"G. Mikić, A. Stoll, J. Bevirt, R. Grah, M. Moore, in:, AIAA, 2016, pp. 1–19.","chicago":"Mikić, Gregor, Alex Stoll, Joe Bevirt, Rok Grah, and Mark Moore. “Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency,” 1–19. AIAA, 2016. <a href=\"https://doi.org/10.2514/6.2016-3764\">https://doi.org/10.2514/6.2016-3764</a>.","ieee":"G. Mikić, A. Stoll, J. Bevirt, R. Grah, and M. Moore, “Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency,” presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA, 2016, pp. 1–19."},"date_published":"2016-06-01T00:00:00Z","oa":1,"date_updated":"2023-02-21T10:17:50Z","status":"public","page":"1 - 19","department":[{"_id":"CaGu"},{"_id":"GaTk"}],"language":[{"iso":"eng"}],"main_file_link":[{"url":"https://ntrs.nasa.gov/search.jsp?R=20160010167&amp;hterms=Fuselage+boundary+layer+ingestion+propulsion+applied+thin+haul+commuter+aircraft+optimal+efficiency&amp;qs=N%3D0%26Ntk%3DAll%26Ntt%3DFuselage%2520boundary%2520layer%2520ingestion%2520propulsion%2520applied%2520to%2520a%2520thin%2520haul%2520commuter%2520aircraft%2520for%2520optimal%2520efficiency%26Ntx%3Dmode%2520matchallpartial%26Nm%3D123%7CCollection%7CNASA%2520STI%7C%7C17%7CCollection%7CNACA","open_access":"1"}],"oa_version":"Preprint","_id":"1220","scopus_import":1,"publisher":"AIAA","doi":"10.2514/6.2016-3764","month":"06","year":"2016","fulldoi":"https://doi.org/10.2514/6.2016-3764","conference":{"start_date":"2016-06-13","name":"AIAA: Aviation Technology, Integration, and Operations Conference","end_date":"2016-06-17","location":"Washington, D.C., USA"},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","day":"01","type":"conference","abstract":[{"text":"Theoretical and numerical aspects of aerodynamic efficiency of propulsion systems coupled to the boundary layer of a fuselage are studied. We discuss the effects of local flow fields, which are affected both by conservative flow acceleration as well as total pressure losses, on the efficiency of boundary layer immersed propulsion devices. We introduce the concept of a boundary layer retardation turbine that helps reduce skin friction over the fuselage. We numerically investigate efficiency gains offered by boundary layer and wake interacting devices. We discuss the results in terms of a total energy consumption framework and show that efficiency gains of any device depend on all the other elements of the propulsion system.","lang":"eng"}]},{"publisher":"F1000 Research","doi":"10.12688/f1000research.7654.1","file_date_updated":"2020-07-14T12:44:39Z","_id":"1221","day":"20","abstract":[{"lang":"eng","text":"The Auxin Binding Protein 1 (ABP1) is one of the most studied proteins in plants. Since decades ago, it has been the prime receptor candidate for the plant hormone auxin with a plethora of described functions in auxin signaling and development. The developmental importance of ABP1 has recently been questioned by identification of Arabidopsis thaliana abp1 knock-out alleles that show no obvious phenotypes under normal growth conditions. In this study, we examined the contradiction between the normal growth and development of the abp1 knock-outs and the strong morphological defects observed in three different ethanol-inducible abp1 knock-down mutants ( abp1-AS, SS12K, SS12S). By analyzing segregating populations of abp1 knock-out vs. abp1 knock-down crosses we show that the strong morphological defects that were believed to be the result of conditional down-regulation of ABP1 can be reproduced also in the absence of the functional ABP1 protein. This data suggests that the phenotypes in abp1 knock-down lines are due to the off-target effects and asks for further reflections on the biological function of ABP1 or alternative explanations for the missing phenotypic defects in the abp1 loss-of-function alleles."}],"quality_controlled":"1","has_accepted_license":"1","fulldoi":"https://doi.org/10.12688/f1000research.7654.1","volume":5,"date_published":"2016-01-20T00:00:00Z","author":[{"first_name":"Jaroslav","last_name":"Michalko","id":"483727CA-F248-11E8-B48F-1D18A9856A87","full_name":"Michalko, Jaroslav"},{"first_name":"Matous","orcid":"0000-0003-0619-7783","last_name":"Glanc","id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2","full_name":"Glanc, Matous"},{"first_name":"Catherine","last_name":"Perrot Rechenmann","full_name":"Perrot Rechenmann, Catherine"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jirí","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jirí"}],"publication_status":"published","publist_id":"6113","acknowledgement":"This work was supported by ERC Independent Research grant (ERC-2011-StG-20101109-PSDP to JF). JM internship was supported by the grant “Action Austria – Slovakia”. MG was supported by the scholarship \"Stipendien der Stipendienstiftung der Republik Österreich\". Work by EH and CPR were supported by ANR blanc ANR-14-CE11-0018. We would like to thank Mark Estelle and Yunde Zhao for provid\r\n-\r\ning \r\nabp1-c1\r\n, \r\nabp1-TD1 \r\nand \r\nabp1-WTc1 \r\nseeds. We thank Emeline \r\nHuault for technical assistance.","article_processing_charge":"No","intvolume":"         5","title":"Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein","language":[{"iso":"eng"}],"department":[{"_id":"JiFr"}],"ec_funded":1,"status":"public","article_number":"86","publication":"F1000 Research ","month":"01","oa_version":"Published Version","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"scopus_import":"1","pubrep_id":"711","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"25716A02-B435-11E9-9278-68D0E5697425","name":"Polarity and subcellular dynamics in plants","grant_number":"282300","call_identifier":"FP7"}],"year":"2016","citation":{"ama":"Michalko J, Glanc M, Perrot Rechenmann C, Friml J. Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein. <i>F1000 Research </i>. 2016;5. doi:<a href=\"https://doi.org/10.12688/f1000research.7654.1\">10.12688/f1000research.7654.1</a>","short":"J. Michalko, M. Glanc, C. Perrot Rechenmann, J. Friml, F1000 Research  5 (2016).","mla":"Michalko, Jaroslav, et al. “Strong Morphological Defects in Conditional Arabidopsis Abp1 Knock-down Mutants Generated in Absence of Functional ABP1 Protein.” <i>F1000 Research </i>, vol. 5, 86, F1000 Research, 2016, doi:<a href=\"https://doi.org/10.12688/f1000research.7654.1\">10.12688/f1000research.7654.1</a>.","apa":"Michalko, J., Glanc, M., Perrot Rechenmann, C., &#38; Friml, J. (2016). Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein. <i>F1000 Research </i>. F1000 Research. <a href=\"https://doi.org/10.12688/f1000research.7654.1\">https://doi.org/10.12688/f1000research.7654.1</a>","ista":"Michalko J, Glanc M, Perrot Rechenmann C, Friml J. 2016. Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein. F1000 Research . 5, 86.","ieee":"J. Michalko, M. Glanc, C. Perrot Rechenmann, and J. Friml, “Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein,” <i>F1000 Research </i>, vol. 5. F1000 Research, 2016.","chicago":"Michalko, Jaroslav, Matous Glanc, Catherine Perrot Rechenmann, and Jiří Friml. “Strong Morphological Defects in Conditional Arabidopsis Abp1 Knock-down Mutants Generated in Absence of Functional ABP1 Protein.” <i>F1000 Research </i>. F1000 Research, 2016. <a href=\"https://doi.org/10.12688/f1000research.7654.1\">https://doi.org/10.12688/f1000research.7654.1</a>."},"oa":1,"date_created":"2018-12-11T11:50:47Z","file":[{"relation":"main_file","file_id":"5154","date_updated":"2020-07-14T12:44:39Z","file_name":"IST-2016-711-v1+1_770cf1e0-612f-4e85-a500-54b6349fbbab_7654_-_jaroslav_michalko.pdf","checksum":"c9e50bb6096a7ba4a832969935820f19","creator":"system","date_created":"2018-12-12T10:15:33Z","access_level":"open_access","file_size":2990459,"content_type":"application/pdf"}],"ddc":["581"],"article_type":"original","date_updated":"2025-04-15T07:48:02Z"},{"main_file_link":[{"url":"https://arxiv.org/abs/1212.0649","open_access":"1"}],"oa_version":"Preprint","scopus_import":"1","external_id":{"isi":["000367625500001"],"arxiv":["1212.0649"]},"month":"01","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","date_created":"2018-12-11T11:50:48Z","arxiv":1,"citation":{"apa":"Musin, O., &#38; Nikitenko, A. (2016). Optimal packings of congruent circles on a square flat torus. <i>Discrete &#38; Computational Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s00454-015-9742-6\">https://doi.org/10.1007/s00454-015-9742-6</a>","mla":"Musin, Oleg, and Anton Nikitenko. “Optimal Packings of Congruent Circles on a Square Flat Torus.” <i>Discrete &#38; Computational Geometry</i>, vol. 55, no. 1, Springer, 2016, pp. 1–20, doi:<a href=\"https://doi.org/10.1007/s00454-015-9742-6\">10.1007/s00454-015-9742-6</a>.","ista":"Musin O, Nikitenko A. 2016. Optimal packings of congruent circles on a square flat torus. Discrete &#38; Computational Geometry. 55(1), 1–20.","ama":"Musin O, Nikitenko A. Optimal packings of congruent circles on a square flat torus. <i>Discrete &#38; Computational Geometry</i>. 2016;55(1):1-20. doi:<a href=\"https://doi.org/10.1007/s00454-015-9742-6\">10.1007/s00454-015-9742-6</a>","short":"O. Musin, A. Nikitenko, Discrete &#38; Computational Geometry 55 (2016) 1–20.","chicago":"Musin, Oleg, and Anton Nikitenko. “Optimal Packings of Congruent Circles on a Square Flat Torus.” <i>Discrete &#38; Computational Geometry</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00454-015-9742-6\">https://doi.org/10.1007/s00454-015-9742-6</a>.","ieee":"O. Musin and A. Nikitenko, “Optimal packings of congruent circles on a square flat torus,” <i>Discrete &#38; Computational Geometry</i>, vol. 55, no. 1. Springer, pp. 1–20, 2016."},"oa":1,"date_updated":"2025-09-22T09:32:23Z","isi":1,"_id":"1222","publisher":"Springer","doi":"10.1007/s00454-015-9742-6","issue":"1","fulldoi":"https://doi.org/10.1007/s00454-015-9742-6","quality_controlled":"1","day":"01","abstract":[{"text":"We consider packings of congruent circles on a square flat torus, i.e., periodic (w.r.t. a square lattice) planar circle packings, with the maximal circle radius. This problem is interesting due to a practical reason—the problem of “super resolution of images.” We have found optimal arrangements for N=6, 7 and 8 circles. Surprisingly, for the case N=7 there are three different optimal arrangements. Our proof is based on a computer enumeration of toroidal irreducible contact graphs.","lang":"eng"}],"publist_id":"6111","acknowledgement":"We wish to thank Alexey Tarasov, Vladislav Volkov and Brittany Fasy for some useful comments and remarks, and especially Thom Sulanke for modifying surftri to suit our purposes. Oleg R. Musin was partially supported by the NSF Grant DMS-1400876 and by the RFBR Grant 15-01-99563. Anton V. Nikitenko was supported by the Chebyshev Laboratory (Department of Mathematics and Mechanics, St. Petersburg State University) under RF Government Grant 11.G34.31.0026.","article_processing_charge":"No","title":"Optimal packings of congruent circles on a square flat torus","intvolume":"        55","publication_status":"published","author":[{"first_name":"Oleg","full_name":"Musin, Oleg","last_name":"Musin"},{"full_name":"Nikitenko, Anton","last_name":"Nikitenko","id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0659-3201","first_name":"Anton"}],"date_published":"2016-01-01T00:00:00Z","volume":55,"status":"public","page":"1 - 20","publication":"Discrete & Computational Geometry","department":[{"_id":"HeEd"}],"language":[{"iso":"eng"}]},{"department":[{"_id":"NiBa"}],"publication":"Plant Biology","page":"98 - 103","status":"public","language":[{"iso":"eng"}],"publication_status":"published","author":[{"full_name":"Teitel, Zachary","last_name":"Teitel","first_name":"Zachary"},{"orcid":"0000-0001-6118-0541","last_name":"Pickup","full_name":"Pickup, Melinda","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","first_name":"Melinda"},{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field","full_name":"Field, David","orcid":"0000-0002-4014-8478","first_name":"David"},{"last_name":"Barrett","full_name":"Barrett, Spencer","first_name":"Spencer"}],"intvolume":"        18","title":"The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant","article_processing_charge":"No","publist_id":"6110","date_published":"2016-01-01T00:00:00Z","volume":18,"issue":"1","fulldoi":"https://doi.org/10.1111/plb.12336","abstract":[{"lang":"eng","text":"Sexual dimorphism in resource allocation is expected to change during the life cycle of dioecious plants because of temporal differences between the sexes in reproductive investment. Given the potential for sex-specific differences in reproductive costs, resource availability may contribute to variation in reproductive allocation in females and males. Here, we used Rumex hastatulus, a dioecious, wind-pollinated annual plant, to investigate whether sexual dimorphism varies with life-history stage and nutrient availability, and determine whether allocation patterns differ depending on reproductive commitment. To examine if the costs of reproduction varied between the sexes, reproduction was either allowed or prevented through bud removal, and biomass allocation was measured at maturity. In a second experiment to assess variation in sexual dimorphism across the life cycle, and whether this varied with resource availability, plants were grown in high and low nutrients and allocation to roots, aboveground vegetative growth and reproduction were measured at three developmental stages. Males prevented from reproducing compensated with increased above- and belowground allocation to a much larger degree than females, suggesting that male reproductive costs reduce vegetative growth. The proportional allocation to roots, reproductive structures and aboveground vegetative growth varied between the sexes and among life-cycle stages, but not with nutrient treatment. Females allocated proportionally more resources to roots than males at peak flowering, but this pattern was reversed at reproductive maturity under low-nutrient conditions. Our study illustrates the importance of temporal dynamics in sex-specific resource allocation and provides support for high male reproductive costs in wind-pollinated plants."}],"day":"01","quality_controlled":"1","_id":"1224","doi":"10.1111/plb.12336","publisher":"Wiley-Blackwell","isi":1,"date_updated":"2025-09-22T09:31:49Z","date_created":"2018-12-11T11:50:48Z","citation":{"chicago":"Teitel, Zachary, Melinda Pickup, David Field, and Spencer Barrett. “The Dynamics of Resource Allocation and Costs of Reproduction in a Sexually Dimorphic, Wind-Pollinated Dioecious Plant.” <i>Plant Biology</i>. Wiley-Blackwell, 2016. <a href=\"https://doi.org/10.1111/plb.12336\">https://doi.org/10.1111/plb.12336</a>.","ieee":"Z. Teitel, M. Pickup, D. Field, and S. Barrett, “The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant,” <i>Plant Biology</i>, vol. 18, no. 1. Wiley-Blackwell, pp. 98–103, 2016.","apa":"Teitel, Z., Pickup, M., Field, D., &#38; Barrett, S. (2016). The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. <i>Plant Biology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/plb.12336\">https://doi.org/10.1111/plb.12336</a>","mla":"Teitel, Zachary, et al. “The Dynamics of Resource Allocation and Costs of Reproduction in a Sexually Dimorphic, Wind-Pollinated Dioecious Plant.” <i>Plant Biology</i>, vol. 18, no. 1, Wiley-Blackwell, 2016, pp. 98–103, doi:<a href=\"https://doi.org/10.1111/plb.12336\">10.1111/plb.12336</a>.","ista":"Teitel Z, Pickup M, Field D, Barrett S. 2016. The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. Plant Biology. 18(1), 98–103.","ama":"Teitel Z, Pickup M, Field D, Barrett S. The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. <i>Plant Biology</i>. 2016;18(1):98-103. doi:<a href=\"https://doi.org/10.1111/plb.12336\">10.1111/plb.12336</a>","short":"Z. Teitel, M. Pickup, D. Field, S. Barrett, Plant Biology 18 (2016) 98–103."},"year":"2016","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","oa_version":"None","month":"01","external_id":{"isi":["000369975700011"]}},{"citation":{"apa":"Fuchsbauer, G., Hanser, C., Kamath Hosdurg, C., &#38; Slamanig, D. (2016). Practical round-optimal blind signatures in the standard model from weaker assumptions (Vol. 9841, pp. 391–408). Presented at the SCN: Security and Cryptography for Networks, Amalfi, Italy: Springer. <a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">https://doi.org/10.1007/978-3-319-44618-9_21</a>","mla":"Fuchsbauer, Georg, et al. <i>Practical Round-Optimal Blind Signatures in the Standard Model from Weaker Assumptions</i>. Vol. 9841, Springer, 2016, pp. 391–408, doi:<a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">10.1007/978-3-319-44618-9_21</a>.","ista":"Fuchsbauer G, Hanser C, Kamath Hosdurg C, Slamanig D. 2016. Practical round-optimal blind signatures in the standard model from weaker assumptions. SCN: Security and Cryptography for Networks, LNCS, vol. 9841, 391–408.","ama":"Fuchsbauer G, Hanser C, Kamath Hosdurg C, Slamanig D. Practical round-optimal blind signatures in the standard model from weaker assumptions. In: Vol 9841. Springer; 2016:391-408. doi:<a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">10.1007/978-3-319-44618-9_21</a>","short":"G. Fuchsbauer, C. Hanser, C. Kamath Hosdurg, D. Slamanig, in:, Springer, 2016, pp. 391–408.","chicago":"Fuchsbauer, Georg, Christian Hanser, Chethan Kamath Hosdurg, and Daniel Slamanig. “Practical Round-Optimal Blind Signatures in the Standard Model from Weaker Assumptions,” 9841:391–408. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">https://doi.org/10.1007/978-3-319-44618-9_21</a>.","ieee":"G. Fuchsbauer, C. Hanser, C. Kamath Hosdurg, and D. Slamanig, “Practical round-optimal blind signatures in the standard model from weaker assumptions,” presented at the SCN: Security and Cryptography for Networks, Amalfi, Italy, 2016, vol. 9841, pp. 391–408."},"oa":1,"date_created":"2018-12-11T11:50:49Z","date_updated":"2025-09-23T09:53:45Z","isi":1,"external_id":{"isi":["000389516500021"]},"month":"08","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2016/662"}],"oa_version":"Submitted Version","alternative_title":["LNCS"],"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"conference","year":"2016","project":[{"_id":"258C570E-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"259668","name":"Provable Security for Physical Cryptography"},{"_id":"258AA5B2-B435-11E9-9278-68D0E5697425","grant_number":"682815","name":"Teaching Old Crypto New Tricks","call_identifier":"H2020"}],"volume":9841,"date_published":"2016-08-11T00:00:00Z","publist_id":"6109","article_processing_charge":"No","intvolume":"      9841","title":"Practical round-optimal blind signatures in the standard model from weaker assumptions","publication_status":"published","author":[{"first_name":"Georg","last_name":"Fuchsbauer","full_name":"Fuchsbauer, Georg","id":"46B4C3EE-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Hanser","full_name":"Hanser, Christian","first_name":"Christian"},{"first_name":"Chethan","last_name":"Kamath Hosdurg","full_name":"Kamath Hosdurg, Chethan","id":"4BD3F30E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Daniel","full_name":"Slamanig, Daniel","last_name":"Slamanig"}],"language":[{"iso":"eng"}],"related_material":{"record":[{"id":"1647","relation":"earlier_version","status":"public"}]},"page":"391 - 408","status":"public","department":[{"_id":"KrPi"}],"ec_funded":1,"publisher":"Springer","doi":"10.1007/978-3-319-44618-9_21","_id":"1225","quality_controlled":"1","day":"11","abstract":[{"lang":"eng","text":"At Crypto 2015 Fuchsbauer, Hanser and Slamanig (FHS) presented the first standard-model construction of efficient roundoptimal blind signatures that does not require complexity leveraging. It is conceptually simple and builds on the primitive of structure-preserving signatures on equivalence classes (SPS-EQ). FHS prove the unforgeability of their scheme assuming EUF-CMA security of the SPS-EQ scheme and hardness of a version of the DH inversion problem. Blindness under adversarially chosen keys is proven under an interactive variant of the DDH assumption. We propose a variant of their scheme whose blindness can be proven under a non-interactive assumption, namely a variant of the bilinear DDH assumption. We moreover prove its unforgeability assuming only unforgeability of the underlying SPS-EQ but no additional assumptions as needed for the FHS scheme."}],"fulldoi":"https://doi.org/10.1007/978-3-319-44618-9_21","conference":{"start_date":"2016-08-31","name":"SCN: Security and Cryptography for Networks","end_date":"2016-09-02","location":"Amalfi, Italy"}},{"external_id":{"pmid":["27595392"],"isi":["000386673100044"]},"month":"10","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164932/"}],"oa_version":"Submitted Version","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","project":[{"_id":"2593EBD6-B435-11E9-9278-68D0E5697425","name":"Atomic-Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes"},{"_id":"2590DB08-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Atomic Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes","grant_number":"701309"}],"year":"2016","citation":{"apa":"Fiedorczuk, K., Letts, J. A., Degliesposti, G., Kaszuba, K., Skehel, M., &#38; Sazanov, L. A. (2016). Atomic structure of the entire mammalian mitochondrial complex i. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature19794\">https://doi.org/10.1038/nature19794</a>","mla":"Fiedorczuk, Karol, et al. “Atomic Structure of the Entire Mammalian Mitochondrial Complex I.” <i>Nature</i>, vol. 538, no. 7625, Nature Publishing Group, 2016, pp. 406–10, doi:<a href=\"https://doi.org/10.1038/nature19794\">10.1038/nature19794</a>.","ista":"Fiedorczuk K, Letts JA, Degliesposti G, Kaszuba K, Skehel M, Sazanov LA. 2016. Atomic structure of the entire mammalian mitochondrial complex i. Nature. 538(7625), 406–410.","short":"K. Fiedorczuk, J.A. Letts, G. Degliesposti, K. Kaszuba, M. Skehel, L.A. Sazanov, Nature 538 (2016) 406–410.","ama":"Fiedorczuk K, Letts JA, Degliesposti G, Kaszuba K, Skehel M, Sazanov LA. Atomic structure of the entire mammalian mitochondrial complex i. <i>Nature</i>. 2016;538(7625):406-410. doi:<a href=\"https://doi.org/10.1038/nature19794\">10.1038/nature19794</a>","chicago":"Fiedorczuk, Karol, James A Letts, Gianluca Degliesposti, Karol Kaszuba, Mark Skehel, and Leonid A Sazanov. “Atomic Structure of the Entire Mammalian Mitochondrial Complex I.” <i>Nature</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nature19794\">https://doi.org/10.1038/nature19794</a>.","ieee":"K. Fiedorczuk, J. A. Letts, G. Degliesposti, K. Kaszuba, M. Skehel, and L. A. Sazanov, “Atomic structure of the entire mammalian mitochondrial complex i,” <i>Nature</i>, vol. 538, no. 7625. Nature Publishing Group, pp. 406–410, 2016."},"oa":1,"date_created":"2018-12-11T11:50:49Z","date_updated":"2025-09-22T09:29:26Z","article_type":"original","isi":1,"publisher":"Nature Publishing Group","doi":"10.1038/nature19794","_id":"1226","quality_controlled":"1","day":"20","abstract":[{"lang":"eng","text":"Mitochondrial complex I (also known as NADH:ubiquinone oxidoreductase) contributes to cellular energy production by transferring electrons from NADH to ubiquinone coupled to proton translocation across the membrane. It is the largest protein assembly of the respiratory chain with a total mass of 970 kilodaltons. Here we present a nearly complete atomic structure of ovine (Ovis aries) mitochondrial complex I at 3.9 Å resolution, solved by cryo-electron microscopy with cross-linking and mass-spectrometry mapping experiments. All 14 conserved core subunits and 31 mitochondria-specific supernumerary subunits are resolved within the L-shaped molecule. The hydrophilic matrix arm comprises flavin mononucleotide and 8 iron-sulfur clusters involved in electron transfer, and the membrane arm contains 78 transmembrane helices, mostly contributed by antiporter-like subunits involved in proton translocation. Supernumerary subunits form an interlinked, stabilizing shell around the conserved core. Tightly bound lipids (including cardiolipins) further stabilize interactions between the hydrophobic subunits. Subunits with possible regulatory roles contain additional cofactors, NADPH and two phosphopantetheine molecules, which are shown to be involved in inter-subunit interactions. We observe two different conformations of the complex, which may be related to the conformationally driven coupling mechanism and to the active-deactive transition of the enzyme. Our structure provides insight into the mechanism, assembly, maturation and dysfunction of mitochondrial complex I, and allows detailed molecular analysis of disease-causing mutations."}],"issue":"7625","fulldoi":"https://doi.org/10.1038/nature19794","date_published":"2016-10-20T00:00:00Z","pmid":1,"volume":538,"publist_id":"6108","article_processing_charge":"No","intvolume":"       538","title":"Atomic structure of the entire mammalian mitochondrial complex i","author":[{"first_name":"Karol","full_name":"Fiedorczuk, Karol","last_name":"Fiedorczuk","id":"5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0"},{"first_name":"James A","full_name":"Letts, James A","last_name":"Letts","id":"322DA418-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9864-3586"},{"first_name":"Gianluca","full_name":"Degliesposti, Gianluca","last_name":"Degliesposti"},{"first_name":"Karol","full_name":"Kaszuba, Karol","last_name":"Kaszuba","id":"3FDF9472-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Mark","last_name":"Skehel","full_name":"Skehel, Mark"},{"first_name":"Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","last_name":"Sazanov","full_name":"Sazanov, Leonid A"}],"publication_status":"published","language":[{"iso":"eng"}],"page":"406 - 410","status":"public","publication":"Nature","department":[{"_id":"LeSa"}],"ec_funded":1},{"citation":{"chicago":"Kong, Hui, Ezio Bartocci, Sergiy Bogomolov, Radu Grosu, Thomas A Henzinger, Yu Jiang, and Christian Schilling. “Discrete Abstraction of Multiaffine Systems,” 9957:128–44. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-319-47151-8_9\">https://doi.org/10.1007/978-3-319-47151-8_9</a>.","ieee":"H. Kong <i>et al.</i>, “Discrete abstraction of multiaffine systems,” presented at the HSB: Hybrid Systems Biology, Grenoble, France, 2016, vol. 9957, pp. 128–144.","mla":"Kong, Hui, et al. <i>Discrete Abstraction of Multiaffine Systems</i>. Vol. 9957, Springer, 2016, pp. 128–44, doi:<a href=\"https://doi.org/10.1007/978-3-319-47151-8_9\">10.1007/978-3-319-47151-8_9</a>.","apa":"Kong, H., Bartocci, E., Bogomolov, S., Grosu, R., Henzinger, T. A., Jiang, Y., &#38; Schilling, C. (2016). Discrete abstraction of multiaffine systems (Vol. 9957, pp. 128–144). Presented at the HSB: Hybrid Systems Biology, Grenoble, France: Springer. <a href=\"https://doi.org/10.1007/978-3-319-47151-8_9\">https://doi.org/10.1007/978-3-319-47151-8_9</a>","ista":"Kong H, Bartocci E, Bogomolov S, Grosu R, Henzinger TA, Jiang Y, Schilling C. 2016. Discrete abstraction of multiaffine systems. HSB: Hybrid Systems Biology, LNCS, vol. 9957, 128–144.","short":"H. Kong, E. Bartocci, S. Bogomolov, R. Grosu, T.A. Henzinger, Y. Jiang, C. Schilling, in:, Springer, 2016, pp. 128–144.","ama":"Kong H, Bartocci E, Bogomolov S, et al. Discrete abstraction of multiaffine systems. In: Vol 9957. Springer; 2016:128-144. doi:<a href=\"https://doi.org/10.1007/978-3-319-47151-8_9\">10.1007/978-3-319-47151-8_9</a>"},"oa":1,"date_created":"2018-12-11T11:50:49Z","file":[{"relation":"main_file","date_updated":"2020-07-14T12:44:39Z","file_id":"4840","file_name":"IST-2017-781-v1+1_main.pdf","checksum":"994e164b558c47bacf8dc066dd27c8fc","creator":"system","date_created":"2018-12-12T10:10:49Z","file_size":683955,"content_type":"application/pdf","access_level":"open_access"}],"ddc":["005"],"isi":1,"date_updated":"2025-09-22T09:24:50Z","month":"09","external_id":{"isi":["000389928100009"]},"alternative_title":["LNCS"],"oa_version":"Submitted Version","scopus_import":"1","pubrep_id":"781","type":"conference","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","project":[{"name":"Formal methods for the design and analysis of complex systems","grant_number":"Z211","call_identifier":"FWF","_id":"25F42A32-B435-11E9-9278-68D0E5697425"},{"name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425"}],"year":"2016","volume":9957,"date_published":"2016-09-25T00:00:00Z","author":[{"orcid":"0000-0002-3066-6941","id":"3BDE25AA-F248-11E8-B48F-1D18A9856A87","last_name":"Kong","full_name":"Kong, Hui","first_name":"Hui"},{"first_name":"Ezio","last_name":"Bartocci","full_name":"Bartocci, Ezio"},{"first_name":"Sergiy","orcid":"0000-0002-0686-0365","full_name":"Bogomolov, Sergiy","last_name":"Bogomolov","id":"369D9A44-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Radu","full_name":"Grosu, Radu","last_name":"Grosu"},{"first_name":"Thomas A","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","orcid":"0000−0002−2985−7724"},{"first_name":"Yu","full_name":"Jiang, Yu","last_name":"Jiang"},{"first_name":"Christian","orcid":"0000-0003-3658-1065","last_name":"Schilling","id":"3A2F4DCE-F248-11E8-B48F-1D18A9856A87","full_name":"Schilling, Christian"}],"publication_status":"published","acknowledgement":"This research was supported in part by the Austrian Science Fund (FWF) under grants S11402-N23, S11405-N23 and S11412-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein Award).","publist_id":"6107","article_processing_charge":"No","title":"Discrete abstraction of multiaffine systems","intvolume":"      9957","language":[{"iso":"eng"}],"department":[{"_id":"ToHe"}],"page":"128 - 144","status":"public","publisher":"Springer","file_date_updated":"2020-07-14T12:44:39Z","doi":"10.1007/978-3-319-47151-8_9","_id":"1227","day":"25","abstract":[{"text":"Many biological systems can be modeled as multiaffine hybrid systems. Due to the nonlinearity of multiaffine systems, it is difficult to verify their properties of interest directly. A common strategy to tackle this problem is to construct and analyze a discrete overapproximation of the original system. However, the conservativeness of a discrete abstraction significantly determines the level of confidence we can have in the properties of the original system. In this paper, in order to reduce the conservativeness of a discrete abstraction, we propose a new method based on a sufficient and necessary decision condition for computing discrete transitions between states in the abstract system. We assume the state space partition of a multiaffine system to be based on a set of multivariate polynomials. Hence, a rectangular partition defined in terms of polynomials of the form (xi − c) is just a simple case of multivariate polynomial partition, and the new decision condition applies naturally. We analyze and demonstrate the improvement of our method over the existing methods using some examples.","lang":"eng"}],"quality_controlled":"1","fulldoi":"https://doi.org/10.1007/978-3-319-47151-8_9","has_accepted_license":"1","conference":{"location":"Grenoble, France","name":"HSB: Hybrid Systems Biology","start_date":"2016-10-20","end_date":"2016-10-21"}},{"fulldoi":"https://doi.org/10.1007/978-3-662-49122-5_16","conference":{"location":"St. Petersburg, FL, USA","name":"VMCAI: Verification, Model Checking and Abstract Interpretation","start_date":"2016-01-17","end_date":"2016-01-19"},"quality_controlled":"1","day":"01","abstract":[{"lang":"eng","text":"Concolic testing is a promising method for generating test suites for large programs. However, it suffers from the path-explosion problem and often fails to find tests that cover difficult-to-reach parts of programs. In contrast, model checkers based on counterexample-guided abstraction refinement explore programs exhaustively, while failing to scale on large programs with precision. In this paper, we present a novel method that iteratively combines concolic testing and model checking to find a test suite for a given coverage criterion. If concolic testing fails to cover some test goals, then the model checker refines its program abstraction to prove more paths infeasible, which reduces the search space for concolic testing. We have implemented our method on top of the concolictesting tool Crest and the model checker CpaChecker. We evaluated our tool on a collection of programs and a category of SvComp benchmarks. In our experiments, we observed an improvement in branch coverage compared to Crest from 48% to 63% in the best case, and from 66% to 71% on average."}],"_id":"1230","publisher":"Springer","doi":"10.1007/978-3-662-49122-5_16","page":"328 - 347","status":"public","department":[{"_id":"ToHe"}],"ec_funded":1,"language":[{"iso":"eng"}],"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"1155"}]},"acknowledgement":"We thank Andrey Kupriyanov for feedback on the manuscript,\r\nand Michael Tautschnig for help with preparing the experiments. This research was supported in part by the European Research Council (ERC) under grant 267989 (QUAREM) and by the Austrian Science Fund (FWF) under grants S11402-N23 (RiSE) and Z211-N23 (Wittgenstein Award).","article_processing_charge":"No","publist_id":"6104","title":"Abstraction-driven concolic testing","intvolume":"      9583","publication_status":"published","author":[{"last_name":"Daca","full_name":"Daca, Przemyslaw","id":"49351290-F248-11E8-B48F-1D18A9856A87","first_name":"Przemyslaw"},{"full_name":"Gupta, Ashutosh","id":"335E5684-F248-11E8-B48F-1D18A9856A87","last_name":"Gupta","first_name":"Ashutosh"},{"first_name":"Thomas A","full_name":"Henzinger, Thomas A","last_name":"Henzinger","orcid":"0000−0002−2985−7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"}],"volume":9583,"date_published":"2016-01-01T00:00:00Z","year":"2016","project":[{"grant_number":"267989","name":"Quantitative Reactive Modeling","call_identifier":"FP7","_id":"25EE3708-B435-11E9-9278-68D0E5697425"},{"_id":"25F42A32-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Formal methods for the design and analysis of complex systems","grant_number":"Z211"},{"call_identifier":"FWF","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"conference","main_file_link":[{"url":"https://arxiv.org/abs/1511.02615","open_access":"1"}],"oa_version":"Preprint","alternative_title":["LNCS"],"scopus_import":"1","external_id":{"isi":["000375148800016"],"arxiv":["1511.02615"]},"month":"01","date_updated":"2026-04-15T10:02:12Z","isi":1,"date_created":"2018-12-11T11:50:50Z","arxiv":1,"citation":{"short":"P. Daca, A. Gupta, T.A. Henzinger, in:, Springer, 2016, pp. 328–347.","ama":"Daca P, Gupta A, Henzinger TA. Abstraction-driven concolic testing. In: Vol 9583. Springer; 2016:328-347. doi:<a href=\"https://doi.org/10.1007/978-3-662-49122-5_16\">10.1007/978-3-662-49122-5_16</a>","apa":"Daca, P., Gupta, A., &#38; Henzinger, T. A. (2016). Abstraction-driven concolic testing (Vol. 9583, pp. 328–347). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, St. Petersburg, FL, USA: Springer. <a href=\"https://doi.org/10.1007/978-3-662-49122-5_16\">https://doi.org/10.1007/978-3-662-49122-5_16</a>","mla":"Daca, Przemyslaw, et al. <i>Abstraction-Driven Concolic Testing</i>. Vol. 9583, Springer, 2016, pp. 328–47, doi:<a href=\"https://doi.org/10.1007/978-3-662-49122-5_16\">10.1007/978-3-662-49122-5_16</a>.","ista":"Daca P, Gupta A, Henzinger TA. 2016. Abstraction-driven concolic testing. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 9583, 328–347.","ieee":"P. Daca, A. Gupta, and T. A. Henzinger, “Abstraction-driven concolic testing,” presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, St. Petersburg, FL, USA, 2016, vol. 9583, pp. 328–347.","chicago":"Daca, Przemyslaw, Ashutosh Gupta, and Thomas A Henzinger. “Abstraction-Driven Concolic Testing,” 9583:328–47. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-662-49122-5_16\">https://doi.org/10.1007/978-3-662-49122-5_16</a>."},"oa":1},{"_id":"1231","doi":"10.1007/978-3-662-49896-5_13","publisher":"Springer","conference":{"location":"Vienna, Austria","start_date":"2016-05-08","name":"EUROCRYPT: Theory and Applications of Cryptographic Techniques","end_date":"2016-05-12"},"fulldoi":"https://doi.org/10.1007/978-3-662-49896-5_13","quality_controlled":"1","abstract":[{"text":"We study the time-and memory-complexities of the problem of computing labels of (multiple) randomly selected challenge-nodes in a directed acyclic graph. The w-bit label of a node is the hash of the labels of its parents, and the hash function is modeled as a random oracle. Specific instances of this problem underlie both proofs of space [Dziembowski et al. CRYPTO’15] as well as popular memory-hard functions like scrypt. As our main tool, we introduce the new notion of a probabilistic parallel entangled pebbling game, a new type of combinatorial pebbling game on a graph, which is closely related to the labeling game on the same graph. As a first application of our framework, we prove that for scrypt, when the underlying hash function is invoked n times, the cumulative memory complexity (CMC) (a notion recently introduced by Alwen and Serbinenko (STOC’15) to capture amortized memory-hardness for parallel adversaries) is at least Ω(w · (n/ log(n))2). This bound holds for adversaries that can store many natural functions of the labels (e.g., linear combinations), but still not arbitrary functions thereof. We then introduce and study a combinatorial quantity, and show how a sufficiently small upper bound on it (which we conjecture) extends our CMC bound for scrypt to hold against arbitrary adversaries. We also show that such an upper bound solves the main open problem for proofs-of-space protocols: namely, establishing that the time complexity of computing the label of a random node in a graph on n nodes (given an initial kw-bit state) reduces tightly to the time complexity for black pebbling on the same graph (given an initial k-node pebbling).","lang":"eng"}],"day":"28","intvolume":"      9666","title":"On the complexity of scrypt and proofs of space in the parallel random oracle model","publist_id":"6103","article_processing_charge":"No","acknowledgement":"Joël Alwen, Chethan Kamath, and Krzysztof Pietrzak’s research is partially supported by an ERC starting grant (259668-PSPC). Vladimir Kolmogorov is partially supported by an ERC consolidator grant (616160-DOICV). Binyi Chen was partially supported by NSF grants CNS-1423566 and CNS-1514526, and a gift from the Gareatis Foundation. Stefano Tessaro was partially supported by NSF grants CNS-1423566, CNS-1528178, a Hellman Fellowship, and the Glen and Susanne Culler Chair.\r\n\r\nThis work was done in part while the authors were visiting the Simons Institute for the Theory of Computing, supported by the Simons Foundation and by the DIMACS/Simons Collaboration in Cryptography through NSF grant CNS-1523467.","author":[{"full_name":"Alwen, Joel F","last_name":"Alwen","id":"2A8DFA8C-F248-11E8-B48F-1D18A9856A87","first_name":"Joel F"},{"full_name":"Chen, Binyi","last_name":"Chen","first_name":"Binyi"},{"full_name":"Kamath Hosdurg, Chethan","last_name":"Kamath Hosdurg","id":"4BD3F30E-F248-11E8-B48F-1D18A9856A87","first_name":"Chethan"},{"id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov","full_name":"Kolmogorov, Vladimir","first_name":"Vladimir"},{"full_name":"Pietrzak, Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9139-1654","last_name":"Pietrzak","first_name":"Krzysztof Z"},{"first_name":"Stefano","full_name":"Tessaro, Stefano","last_name":"Tessaro"}],"publication_status":"published","volume":9666,"date_published":"2016-04-28T00:00:00Z","status":"public","page":"358 - 387","ec_funded":1,"department":[{"_id":"KrPi"},{"_id":"VlKo"}],"language":[{"iso":"eng"}],"main_file_link":[{"url":"https://eprint.iacr.org/2016/100","open_access":"1"}],"scopus_import":"1","oa_version":"Submitted Version","alternative_title":["LNCS"],"external_id":{"isi":["000389727200013"]},"month":"04","project":[{"grant_number":"259668","name":"Provable Security for Physical Cryptography","call_identifier":"FP7","_id":"258C570E-B435-11E9-9278-68D0E5697425"},{"name":"Discrete Optimization in Computer Vision: Theory and Practice","grant_number":"616160","call_identifier":"FP7","_id":"25FBA906-B435-11E9-9278-68D0E5697425"}],"year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"conference","date_created":"2018-12-11T11:50:51Z","oa":1,"citation":{"chicago":"Alwen, Joel F, Binyi Chen, Chethan Kamath Hosdurg, Vladimir Kolmogorov, Krzysztof Z Pietrzak, and Stefano Tessaro. “On the Complexity of Scrypt and Proofs of Space in the Parallel Random Oracle Model,” 9666:358–87. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-662-49896-5_13\">https://doi.org/10.1007/978-3-662-49896-5_13</a>.","ieee":"J. F. Alwen, B. Chen, C. Kamath Hosdurg, V. Kolmogorov, K. Z. Pietrzak, and S. Tessaro, “On the complexity of scrypt and proofs of space in the parallel random oracle model,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Vienna, Austria, 2016, vol. 9666, pp. 358–387.","ista":"Alwen JF, Chen B, Kamath Hosdurg C, Kolmogorov V, Pietrzak KZ, Tessaro S. 2016. On the complexity of scrypt and proofs of space in the parallel random oracle model. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 9666, 358–387.","apa":"Alwen, J. F., Chen, B., Kamath Hosdurg, C., Kolmogorov, V., Pietrzak, K. Z., &#38; Tessaro, S. (2016). On the complexity of scrypt and proofs of space in the parallel random oracle model (Vol. 9666, pp. 358–387). Presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Vienna, Austria: Springer. <a href=\"https://doi.org/10.1007/978-3-662-49896-5_13\">https://doi.org/10.1007/978-3-662-49896-5_13</a>","mla":"Alwen, Joel F., et al. <i>On the Complexity of Scrypt and Proofs of Space in the Parallel Random Oracle Model</i>. Vol. 9666, Springer, 2016, pp. 358–87, doi:<a href=\"https://doi.org/10.1007/978-3-662-49896-5_13\">10.1007/978-3-662-49896-5_13</a>.","short":"J.F. Alwen, B. Chen, C. Kamath Hosdurg, V. Kolmogorov, K.Z. Pietrzak, S. Tessaro, in:, Springer, 2016, pp. 358–387.","ama":"Alwen JF, Chen B, Kamath Hosdurg C, Kolmogorov V, Pietrzak KZ, Tessaro S. On the complexity of scrypt and proofs of space in the parallel random oracle model. In: Vol 9666. Springer; 2016:358-387. doi:<a href=\"https://doi.org/10.1007/978-3-662-49896-5_13\">10.1007/978-3-662-49896-5_13</a>"},"date_updated":"2025-09-22T09:22:54Z","isi":1},{"year":"2016","project":[{"_id":"2593EBD6-B435-11E9-9278-68D0E5697425","name":"Atomic-Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","scopus_import":"1","oa_version":"None","external_id":{"isi":["000384331700042"]},"month":"09","date_updated":"2025-09-22T09:22:23Z","isi":1,"date_created":"2018-12-11T11:50:51Z","citation":{"ieee":"J. A. Letts, K. Fiedorczuk, and L. A. Sazanov, “The architecture of respiratory supercomplexes,” <i>Nature</i>, vol. 537, no. 7622. Nature Publishing Group, pp. 644–648, 2016.","chicago":"Letts, James A, Karol Fiedorczuk, and Leonid A Sazanov. “The Architecture of Respiratory Supercomplexes.” <i>Nature</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nature19774\">https://doi.org/10.1038/nature19774</a>.","short":"J.A. Letts, K. Fiedorczuk, L.A. Sazanov, Nature 537 (2016) 644–648.","ama":"Letts JA, Fiedorczuk K, Sazanov LA. The architecture of respiratory supercomplexes. <i>Nature</i>. 2016;537(7622):644-648. doi:<a href=\"https://doi.org/10.1038/nature19774\">10.1038/nature19774</a>","apa":"Letts, J. A., Fiedorczuk, K., &#38; Sazanov, L. A. (2016). The architecture of respiratory supercomplexes. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature19774\">https://doi.org/10.1038/nature19774</a>","mla":"Letts, James A., et al. “The Architecture of Respiratory Supercomplexes.” <i>Nature</i>, vol. 537, no. 7622, Nature Publishing Group, 2016, pp. 644–48, doi:<a href=\"https://doi.org/10.1038/nature19774\">10.1038/nature19774</a>.","ista":"Letts JA, Fiedorczuk K, Sazanov LA. 2016. The architecture of respiratory supercomplexes. Nature. 537(7622), 644–648."},"issue":"7622","fulldoi":"https://doi.org/10.1038/nature19774","quality_controlled":"1","abstract":[{"text":"Mitochondrial electron transport chain complexes are organized into supercomplexes responsible for carrying out cellular respiration. Here we present three architectures of mammalian (ovine) supercomplexes determined by cryo-electron microscopy. We identify two distinct arrangements of supercomplex CICIII 2 CIV (the respirasome) - a major 'tight' form and a minor 'loose' form (resolved at the resolution of 5.8 Å and 6.7 Å, respectively), which may represent different stages in supercomplex assembly or disassembly. We have also determined an architecture of supercomplex CICIII 2 at 7.8 Å resolution. All observed density can be attributed to the known 80 subunits of the individual complexes, including 132 transmembrane helices. The individual complexes form tight interactions that vary between the architectures, with complex IV subunit COX7a switching contact from complex III to complex I. The arrangement of active sites within the supercomplex may help control reactive oxygen species production. To our knowledge, these are the first complete architectures of the dominant, physiologically relevant state of the electron transport chain.","lang":"eng"}],"day":"29","_id":"1232","doi":"10.1038/nature19774","publisher":"Nature Publishing Group","publication":"Nature","status":"public","page":"644 - 648","department":[{"_id":"LeSa"}],"language":[{"iso":"eng"}],"title":"The architecture of respiratory supercomplexes","intvolume":"       537","publist_id":"6102","acknowledgement":"We thank the MRC LMB Cambridge for the use of the Titan Krios microscope. Data processing was performed using the IST high-performance computer cluster. J.A.L. holds a long-term fellowship from FEBS. K.F. is partially funded by a MRC UK PhD fellowship.","article_processing_charge":"No","publication_status":"published","author":[{"first_name":"James A","orcid":"0000-0002-9864-3586","full_name":"Letts, James A","id":"322DA418-F248-11E8-B48F-1D18A9856A87","last_name":"Letts"},{"first_name":"Karol","full_name":"Fiedorczuk, Karol","last_name":"Fiedorczuk","id":"5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0"},{"first_name":"Leonid A","last_name":"Sazanov","orcid":"0000-0002-0977-7989","full_name":"Sazanov, Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2016-09-29T00:00:00Z","volume":537},{"main_file_link":[{"url":"https://eprint.iacr.org/2015/853","open_access":"1"}],"oa_version":"Submitted Version","alternative_title":["LNCS"],"scopus_import":"1","external_id":{"isi":["000376041100012"]},"month":"01","project":[{"grant_number":"259668","name":"Provable Security for Physical Cryptography","call_identifier":"FP7","_id":"258C570E-B435-11E9-9278-68D0E5697425"}],"year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"conference","date_created":"2018-12-11T11:50:51Z","citation":{"short":"G. Fuchsbauer, F. Heuer, E. Kiltz, K.Z. Pietrzak, in:, Springer, 2016, pp. 282–305.","ama":"Fuchsbauer G, Heuer F, Kiltz E, Pietrzak KZ. Standard security does imply security against selective opening for markov distributions. In: Vol 9562. Springer; 2016:282-305. doi:<a href=\"https://doi.org/10.1007/978-3-662-49096-9_12\">10.1007/978-3-662-49096-9_12</a>","mla":"Fuchsbauer, Georg, et al. <i>Standard Security Does Imply Security against Selective Opening for Markov Distributions</i>. Vol. 9562, Springer, 2016, pp. 282–305, doi:<a href=\"https://doi.org/10.1007/978-3-662-49096-9_12\">10.1007/978-3-662-49096-9_12</a>.","apa":"Fuchsbauer, G., Heuer, F., Kiltz, E., &#38; Pietrzak, K. Z. (2016). Standard security does imply security against selective opening for markov distributions (Vol. 9562, pp. 282–305). Presented at the TCC: Theory of Cryptography Conference, Tel Aviv, Israel: Springer. <a href=\"https://doi.org/10.1007/978-3-662-49096-9_12\">https://doi.org/10.1007/978-3-662-49096-9_12</a>","ista":"Fuchsbauer G, Heuer F, Kiltz E, Pietrzak KZ. 2016. Standard security does imply security against selective opening for markov distributions. TCC: Theory of Cryptography Conference, LNCS, vol. 9562, 282–305.","ieee":"G. Fuchsbauer, F. Heuer, E. Kiltz, and K. Z. Pietrzak, “Standard security does imply security against selective opening for markov distributions,” presented at the TCC: Theory of Cryptography Conference, Tel Aviv, Israel, 2016, vol. 9562, pp. 282–305.","chicago":"Fuchsbauer, Georg, Felix Heuer, Eike Kiltz, and Krzysztof Z Pietrzak. “Standard Security Does Imply Security against Selective Opening for Markov Distributions,” 9562:282–305. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-662-49096-9_12\">https://doi.org/10.1007/978-3-662-49096-9_12</a>."},"oa":1,"date_updated":"2025-09-22T09:21:52Z","isi":1,"_id":"1233","publisher":"Springer","doi":"10.1007/978-3-662-49096-9_12","fulldoi":"https://doi.org/10.1007/978-3-662-49096-9_12","conference":{"location":"Tel Aviv, Israel","end_date":"2016-01-13","start_date":"2016-01-10","name":"TCC: Theory of Cryptography Conference"},"quality_controlled":"1","day":"01","abstract":[{"text":"About three decades ago it was realized that implementing private channels between parties which can be adaptively corrupted requires an encryption scheme that is secure against selective opening attacks. Whether standard (IND-CPA) security implies security against selective opening attacks has been a major open question since. The only known reduction from selective opening to IND-CPA security loses an exponential factor. A polynomial reduction is only known for the very special case where the distribution considered in the selective opening security experiment is a product distribution, i.e., the messages are sampled independently from each other. In this paper we give a reduction whose loss is quantified via the dependence graph (where message dependencies correspond to edges) of the underlying message distribution. In particular, for some concrete distributions including Markov distributions, our reduction is polynomial.","lang":"eng"}],"article_processing_charge":"No","acknowledgement":"G. Fuchsbauer and K. Pietrzak are supported by the European Research Council, ERC Starting Grant (259668-PSPC). F. Heuer is funded by a Sofja Kovalevskaja Award of the Alexander von Humboldt Foundation and DFG SPP 1736, Algorithms for BIG DATA. E. Kiltz is supported by a Sofja Kovalevskaja Award of the Alexander von Humboldt Foundation, the German Israel Foundation, and ERC Project ERCC (FP7/615074).","publist_id":"6100","title":"Standard security does imply security against selective opening for markov distributions","intvolume":"      9562","author":[{"id":"46B4C3EE-F248-11E8-B48F-1D18A9856A87","full_name":"Fuchsbauer, Georg","last_name":"Fuchsbauer","first_name":"Georg"},{"first_name":"Felix","full_name":"Heuer, Felix","last_name":"Heuer"},{"last_name":"Kiltz","full_name":"Kiltz, Eike","first_name":"Eike"},{"first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak","full_name":"Pietrzak, Krzysztof Z","orcid":"0000-0002-9139-1654"}],"publication_status":"published","date_published":"2016-01-01T00:00:00Z","volume":9562,"status":"public","page":"282 - 305","department":[{"_id":"KrPi"}],"ec_funded":1,"language":[{"iso":"eng"}]}]