[{"language":[{"iso":"eng"}],"quality_controlled":"1","issue":"7","department":[{"_id":"RoSe"}],"oa":1,"oa_version":"Submitted Version","_id":"1904","date_created":"2018-12-11T11:54:38Z","doi":"10.4171/JEMS/467","main_file_link":[{"url":"http://arxiv.org/abs/1306.1309","open_access":"1"}],"citation":{"ista":"Frank R, Lewin M, Lieb É, Seiringer R. 2014. Strichartz inequality for orthonormal functions. Journal of the European Mathematical Society. 16(7), 1507–1526.","apa":"Frank, R., Lewin, M., Lieb, É., &#38; Seiringer, R. (2014). Strichartz inequality for orthonormal functions. <i>Journal of the European Mathematical Society</i>. European Mathematical Society. <a href=\"https://doi.org/10.4171/JEMS/467\">https://doi.org/10.4171/JEMS/467</a>","mla":"Frank, Rupert, et al. “Strichartz Inequality for Orthonormal Functions.” <i>Journal of the European Mathematical Society</i>, vol. 16, no. 7, European Mathematical Society, 2014, pp. 1507–26, doi:<a href=\"https://doi.org/10.4171/JEMS/467\">10.4171/JEMS/467</a>.","ieee":"R. Frank, M. Lewin, É. Lieb, and R. Seiringer, “Strichartz inequality for orthonormal functions,” <i>Journal of the European Mathematical Society</i>, vol. 16, no. 7. European Mathematical Society, pp. 1507–1526, 2014.","short":"R. Frank, M. Lewin, É. Lieb, R. Seiringer, Journal of the European Mathematical Society 16 (2014) 1507–1526.","chicago":"Frank, Rupert, Mathieu Lewin, Élliott Lieb, and Robert Seiringer. “Strichartz Inequality for Orthonormal Functions.” <i>Journal of the European Mathematical Society</i>. European Mathematical Society, 2014. <a href=\"https://doi.org/10.4171/JEMS/467\">https://doi.org/10.4171/JEMS/467</a>.","ama":"Frank R, Lewin M, Lieb É, Seiringer R. Strichartz inequality for orthonormal functions. <i>Journal of the European Mathematical Society</i>. 2014;16(7):1507-1526. doi:<a href=\"https://doi.org/10.4171/JEMS/467\">10.4171/JEMS/467</a>"},"scopus_import":"1","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"08","arxiv":1,"project":[{"name":"NSERC Postdoctoral fellowship","_id":"26450934-B435-11E9-9278-68D0E5697425"}],"article_processing_charge":"No","page":"1507 - 1526","external_id":{"isi":["000345494900006"],"arxiv":["1306.1309"]},"volume":16,"publication":"Journal of the European Mathematical Society","abstract":[{"lang":"eng","text":"We prove a Strichartz inequality for a system of orthonormal functions, with an optimal behavior of the constant in the limit of a large number of functions. The estimate generalizes the usual Strichartz inequality, in the same fashion as the Lieb-Thirring inequality generalizes the Sobolev inequality. As an application, we consider the Schrödinger equation with a time-dependent potential and we show the existence of the wave operator in Schatten spaces."}],"title":"Strichartz inequality for orthonormal functions","day":"23","year":"2014","publication_status":"published","status":"public","publisher":"European Mathematical Society","date_updated":"2025-09-29T12:28:54Z","isi":1,"intvolume":"        16","date_published":"2014-08-23T00:00:00Z","author":[{"last_name":"Frank","first_name":"Rupert","full_name":"Frank, Rupert"},{"last_name":"Lewin","first_name":"Mathieu","full_name":"Lewin, Mathieu"},{"first_name":"Élliott","last_name":"Lieb","full_name":"Lieb, Élliott"},{"first_name":"Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"publist_id":"5191"},{"article_processing_charge":"No","page":"960 - 974","external_id":{"pmid":["24725091"],"isi":["000334966800015"]},"title":"Selection from parasites favours immunogenetic diversity but not divergence among locally adapted host populations","volume":27,"publication":"Journal of Evolutionary Biology","abstract":[{"lang":"eng","text":"The unprecedented polymorphism in the major histocompatibility complex (MHC) genes is thought to be maintained by balancing selection from parasites. However, do parasites also drive divergence at MHC loci between host populations, or do the effects of balancing selection maintain similarities among populations? We examined MHC variation in populations of the livebearing fish Poecilia mexicana and characterized their parasite communities. Poecilia mexicana populations in the Cueva del Azufre system are locally adapted to darkness and the presence of toxic hydrogen sulphide, representing highly divergent ecotypes or incipient species. Parasite communities differed significantly across populations, and populations with higher parasite loads had higher levels of diversity at class II MHC genes. However, despite different parasite communities, marked divergence in adaptive traits and in neutral genetic markers, we found MHC alleles to be remarkably similar among host populations. Our findings indicate that balancing selection from parasites maintains immunogenetic diversity of hosts, but this process does not promote MHC divergence in this system. On the contrary, we suggest that balancing selection on immunogenetic loci may outweigh divergent selection causing divergence, thereby hindering host divergence and speciation. Our findings support the hypothesis that balancing selection maintains MHC similarities among lineages during and after speciation (trans-species evolution)."}],"oa_version":"None","oa":1,"department":[{"_id":"SyCr"}],"language":[{"iso":"eng"}],"quality_controlled":"1","issue":"5","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"04","citation":{"short":"M. Tobler, M. Plath, R. Riesch, I. Schlupp, A.V. Grasse, G. Munimanda, C. Setzer, D. Penn, Y. Moodley, Journal of Evolutionary Biology 27 (2014) 960–974.","ieee":"M. Tobler <i>et al.</i>, “Selection from parasites favours immunogenetic diversity but not divergence among locally adapted host populations,” <i>Journal of Evolutionary Biology</i>, vol. 27, no. 5. Wiley, pp. 960–974, 2014.","mla":"Tobler, Michael, et al. “Selection from Parasites Favours Immunogenetic Diversity but Not Divergence among Locally Adapted Host Populations.” <i>Journal of Evolutionary Biology</i>, vol. 27, no. 5, Wiley, 2014, pp. 960–74, doi:<a href=\"https://doi.org/10.1111/jeb.12370\">10.1111/jeb.12370</a>.","ama":"Tobler M, Plath M, Riesch R, et al. Selection from parasites favours immunogenetic diversity but not divergence among locally adapted host populations. <i>Journal of Evolutionary Biology</i>. 2014;27(5):960-974. doi:<a href=\"https://doi.org/10.1111/jeb.12370\">10.1111/jeb.12370</a>","chicago":"Tobler, Michael, Martin Plath, Rüdiger Riesch, Ingo Schlupp, Anna V Grasse, Gopi Munimanda, C Setzer, Dustin Penn, and Yoshan Moodley. “Selection from Parasites Favours Immunogenetic Diversity but Not Divergence among Locally Adapted Host Populations.” <i>Journal of Evolutionary Biology</i>. Wiley, 2014. <a href=\"https://doi.org/10.1111/jeb.12370\">https://doi.org/10.1111/jeb.12370</a>.","ista":"Tobler M, Plath M, Riesch R, Schlupp I, Grasse AV, Munimanda G, Setzer C, Penn D, Moodley Y. 2014. Selection from parasites favours immunogenetic diversity but not divergence among locally adapted host populations. Journal of Evolutionary Biology. 27(5), 960–974.","apa":"Tobler, M., Plath, M., Riesch, R., Schlupp, I., Grasse, A. V., Munimanda, G., … Moodley, Y. (2014). Selection from parasites favours immunogenetic diversity but not divergence among locally adapted host populations. <i>Journal of Evolutionary Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/jeb.12370\">https://doi.org/10.1111/jeb.12370</a>"},"scopus_import":"1","acknowledgement":"This study was funded by grants from the National Science Foundation (NSF) to MT (IOS-1121832) and IS (DEB-0743406) and from the German Science Foundation (DFG; PL 470/1-2) and ‘LOEWE − Landesoffensive zur Entwicklung wissenschaftlich-ökonomischer Exzellenz’ of Hesse's Ministry of Higher Education, Research, and the Arts, to MP.","main_file_link":[{"url":"https://doi.org/10.1111/jeb.12370","open_access":"1"}],"_id":"1905","publication_identifier":{"eissn":["1420-9101"],"issn":["1010-061X"]},"doi":"10.1111/jeb.12370","date_created":"2018-12-11T11:54:38Z","intvolume":"        27","isi":1,"author":[{"full_name":"Tobler, Michael","last_name":"Tobler","first_name":"Michael"},{"full_name":"Plath, Martin","first_name":"Martin","last_name":"Plath"},{"last_name":"Riesch","first_name":"Rüdiger","full_name":"Riesch, Rüdiger"},{"full_name":"Schlupp, Ingo","first_name":"Ingo","last_name":"Schlupp"},{"full_name":"Grasse, Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87","first_name":"Anna V","last_name":"Grasse"},{"full_name":"Munimanda, Gopi","last_name":"Munimanda","first_name":"Gopi"},{"last_name":"Setzer","first_name":"C","full_name":"Setzer, C"},{"full_name":"Penn, Dustin","first_name":"Dustin","last_name":"Penn"},{"last_name":"Moodley","first_name":"Yoshan","full_name":"Moodley, Yoshan"}],"publist_id":"5190","OA_type":"free access","date_published":"2014-04-12T00:00:00Z","year":"2014","day":"12","date_updated":"2025-09-29T12:28:21Z","publisher":"Wiley","article_type":"original","pmid":1,"publication_status":"published","status":"public"},{"intvolume":"        20","isi":1,"has_accepted_license":"1","date_published":"2014-09-09T00:00:00Z","ddc":["000"],"author":[{"full_name":"Arikan, Murat","first_name":"Murat","last_name":"Arikan"},{"full_name":"Preiner, Reinhold","first_name":"Reinhold","last_name":"Preiner"},{"last_name":"Scheiblauer","first_name":"Claus","full_name":"Scheiblauer, Claus"},{"full_name":"Jeschke, Stefan","id":"44D6411A-F248-11E8-B48F-1D18A9856A87","first_name":"Stefan","last_name":"Jeschke"},{"full_name":"Wimmer, Michael","last_name":"Wimmer","first_name":"Michael"}],"publist_id":"5189","year":"2014","day":"09","file":[{"file_name":"IST-2016-573-v1+1_arikan-2014-pcvis-draft.pdf","file_id":"5297","creator":"system","file_size":13594598,"content_type":"application/pdf","date_updated":"2020-07-14T12:45:20Z","checksum":"5bf58942d2eb20adf03c7f9ea2e68124","date_created":"2018-12-12T10:17:41Z","relation":"main_file","access_level":"open_access"}],"publication_status":"published","pubrep_id":"573","status":"public","date_updated":"2025-09-29T12:27:48Z","publisher":"IEEE","external_id":{"isi":["000341566500006"]},"page":"1280 - 1292","article_processing_charge":"No","project":[{"name":"Deep Pictures: Creating Visual and Haptic Vector Images","call_identifier":"FWF","grant_number":"P 24352-N23","_id":"25357BD2-B435-11E9-9278-68D0E5697425"}],"volume":20,"abstract":[{"text":"In this paper, we introduce a novel scene representation for the visualization of large-scale point clouds accompanied by a set of high-resolution photographs. Many real-world applications deal with very densely sampled point-cloud data, which are augmented with photographs that often reveal lighting variations and inaccuracies in registration. Consequently, the high-quality representation of the captured data, i.e., both point clouds and photographs together, is a challenging and time-consuming task. We propose a two-phase approach, in which the first (preprocessing) phase generates multiple overlapping surface patches and handles the problem of seamless texture generation locally for each patch. The second phase stitches these patches at render-time to produce a high-quality visualization of the data. As a result of the proposed localization of the global texturing problem, our algorithm is more than an order of magnitude faster than equivalent mesh-based texturing techniques. Furthermore, since our preprocessing phase requires only a minor fraction of the whole data set at once, we provide maximum flexibility when dealing with growing data sets.","lang":"eng"}],"publication":"IEEE Transactions on Visualization and Computer Graphics","file_date_updated":"2020-07-14T12:45:20Z","title":"Large-scale point-cloud visualization through localized textured surface reconstruction","language":[{"iso":"eng"}],"issue":"9","oa_version":"Submitted Version","oa":1,"department":[{"_id":"ChWo"}],"acknowledgement":"This research was supported by the Austrian Research Promotion Agency (FFG) project REPLICATE (no. 835948), the EU FP7 project HARVEST4D (no. 323567).","_id":"1906","date_created":"2018-12-11T11:54:39Z","doi":"10.1109/TVCG.2014.2312011","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"09","citation":{"ama":"Arikan M, Preiner R, Scheiblauer C, Jeschke S, Wimmer M. Large-scale point-cloud visualization through localized textured surface reconstruction. <i>IEEE Transactions on Visualization and Computer Graphics</i>. 2014;20(9):1280-1292. doi:<a href=\"https://doi.org/10.1109/TVCG.2014.2312011\">10.1109/TVCG.2014.2312011</a>","chicago":"Arikan, Murat, Reinhold Preiner, Claus Scheiblauer, Stefan Jeschke, and Michael Wimmer. “Large-Scale Point-Cloud Visualization through Localized Textured Surface Reconstruction.” <i>IEEE Transactions on Visualization and Computer Graphics</i>. IEEE, 2014. <a href=\"https://doi.org/10.1109/TVCG.2014.2312011\">https://doi.org/10.1109/TVCG.2014.2312011</a>.","short":"M. Arikan, R. Preiner, C. Scheiblauer, S. Jeschke, M. Wimmer, IEEE Transactions on Visualization and Computer Graphics 20 (2014) 1280–1292.","ieee":"M. Arikan, R. Preiner, C. Scheiblauer, S. Jeschke, and M. Wimmer, “Large-scale point-cloud visualization through localized textured surface reconstruction,” <i>IEEE Transactions on Visualization and Computer Graphics</i>, vol. 20, no. 9. IEEE, pp. 1280–1292, 2014.","mla":"Arikan, Murat, et al. “Large-Scale Point-Cloud Visualization through Localized Textured Surface Reconstruction.” <i>IEEE Transactions on Visualization and Computer Graphics</i>, vol. 20, no. 9, IEEE, 2014, pp. 1280–92, doi:<a href=\"https://doi.org/10.1109/TVCG.2014.2312011\">10.1109/TVCG.2014.2312011</a>.","apa":"Arikan, M., Preiner, R., Scheiblauer, C., Jeschke, S., &#38; Wimmer, M. (2014). Large-scale point-cloud visualization through localized textured surface reconstruction. <i>IEEE Transactions on Visualization and Computer Graphics</i>. IEEE. <a href=\"https://doi.org/10.1109/TVCG.2014.2312011\">https://doi.org/10.1109/TVCG.2014.2312011</a>","ista":"Arikan M, Preiner R, Scheiblauer C, Jeschke S, Wimmer M. 2014. Large-scale point-cloud visualization through localized textured surface reconstruction. IEEE Transactions on Visualization and Computer Graphics. 20(9), 1280–1292."},"scopus_import":"1"},{"type":"conference","date_updated":"2021-01-12T06:53:59Z","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","month":"01","publisher":"IEEE","citation":{"chicago":"Demay, Grégory, Peter Gazi, Ueli Maurer, and Björn Tackmann. “Optimality of Non-Adaptive Strategies: The Case of Parallel Games.” In <i>IEEE International Symposium on Information Theory</i>. IEEE, 2014. <a href=\"https://doi.org/10.1109/ISIT.2014.6875125\">https://doi.org/10.1109/ISIT.2014.6875125</a>.","ama":"Demay G, Gazi P, Maurer U, Tackmann B. Optimality of non-adaptive strategies: The case of parallel games. In: <i>IEEE International Symposium on Information Theory</i>. IEEE; 2014. doi:<a href=\"https://doi.org/10.1109/ISIT.2014.6875125\">10.1109/ISIT.2014.6875125</a>","mla":"Demay, Grégory, et al. “Optimality of Non-Adaptive Strategies: The Case of Parallel Games.” <i>IEEE International Symposium on Information Theory</i>, 6875125, IEEE, 2014, doi:<a href=\"https://doi.org/10.1109/ISIT.2014.6875125\">10.1109/ISIT.2014.6875125</a>.","ieee":"G. Demay, P. Gazi, U. Maurer, and B. Tackmann, “Optimality of non-adaptive strategies: The case of parallel games,” in <i>IEEE International Symposium on Information Theory</i>, Honolulu, USA, 2014.","short":"G. Demay, P. Gazi, U. Maurer, B. Tackmann, in:, IEEE International Symposium on Information Theory, IEEE, 2014.","apa":"Demay, G., Gazi, P., Maurer, U., &#38; Tackmann, B. (2014). Optimality of non-adaptive strategies: The case of parallel games. In <i>IEEE International Symposium on Information Theory</i>. Honolulu, USA: IEEE. <a href=\"https://doi.org/10.1109/ISIT.2014.6875125\">https://doi.org/10.1109/ISIT.2014.6875125</a>","ista":"Demay G, Gazi P, Maurer U, Tackmann B. 2014. Optimality of non-adaptive strategies: The case of parallel games. IEEE International Symposium on Information Theory. IEEE International Symposium on Information Theory Proceedings, 6875125."},"scopus_import":1,"main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2014/299"}],"_id":"1907","publication_status":"published","status":"public","doi":"10.1109/ISIT.2014.6875125","date_created":"2018-12-11T11:54:39Z","oa_version":"Submitted Version","oa":1,"department":[{"_id":"KrPi"}],"year":"2014","language":[{"iso":"eng"}],"quality_controlled":"1","day":"01","article_number":"6875125","title":"Optimality of non-adaptive strategies: The case of parallel games","author":[{"first_name":"Grégory","last_name":"Demay","full_name":"Demay, Grégory"},{"id":"3E0BFE38-F248-11E8-B48F-1D18A9856A87","full_name":"Gazi, Peter","last_name":"Gazi","first_name":"Peter"},{"full_name":"Maurer, Ueli","last_name":"Maurer","first_name":"Ueli"},{"first_name":"Björn","last_name":"Tackmann","full_name":"Tackmann, Björn"}],"publist_id":"5188","publication":"IEEE International Symposium on Information Theory","abstract":[{"lang":"eng","text":"Most cryptographic security proofs require showing that two systems are indistinguishable. A central tool in such proofs is that of a game, where winning the game means provoking a certain condition, and it is shown that the two systems considered cannot be distinguished unless this condition is provoked. Upper bounding the probability of winning such a game, i.e., provoking this condition, for an arbitrary strategy is usually hard, except in the special case where the best strategy for winning such a game is known to be non-adaptive. A sufficient criterion for ensuring the optimality of non-adaptive strategies is that of conditional equivalence to a system, a notion introduced in [1]. In this paper, we show that this criterion is not necessary to ensure the optimality of non-adaptive strategies by giving two results of independent interest: 1) the optimality of non-adaptive strategies is not preserved under parallel composition; 2) in contrast, conditional equivalence is preserved under parallel composition."}],"date_published":"2014-01-01T00:00:00Z","conference":{"name":"IEEE International Symposium on Information Theory Proceedings","location":"Honolulu, USA","start_date":"2014-06-29","end_date":"2014-07-04"}},{"publication_status":"published","status":"public","publisher":"Genetics Society of America","date_updated":"2025-09-29T12:27:03Z","day":"01","year":"2014","date_published":"2014-04-01T00:00:00Z","corr_author":"1","author":[{"last_name":"Weissman","first_name":"Daniel","id":"2D0CE020-F248-11E8-B48F-1D18A9856A87","full_name":"Weissman, Daniel"},{"first_name":"Oskar","last_name":"Hallatschek","full_name":"Hallatschek, Oskar"}],"publist_id":"5187","isi":1,"intvolume":"       196","_id":"1908","date_created":"2018-12-11T11:54:39Z","doi":"10.1534/genetics.113.160705","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1307.0737"}],"citation":{"apa":"Weissman, D., &#38; Hallatschek, O. (2014). The rate of adaptation in large sexual populations with linear chromosomes. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.113.160705\">https://doi.org/10.1534/genetics.113.160705</a>","ista":"Weissman D, Hallatschek O. 2014. The rate of adaptation in large sexual populations with linear chromosomes. Genetics. 196(4), 1167–1183.","chicago":"Weissman, Daniel, and Oskar Hallatschek. “The Rate of Adaptation in Large Sexual Populations with Linear Chromosomes.” <i>Genetics</i>. Genetics Society of America, 2014. <a href=\"https://doi.org/10.1534/genetics.113.160705\">https://doi.org/10.1534/genetics.113.160705</a>.","ama":"Weissman D, Hallatschek O. The rate of adaptation in large sexual populations with linear chromosomes. <i>Genetics</i>. 2014;196(4):1167-1183. doi:<a href=\"https://doi.org/10.1534/genetics.113.160705\">10.1534/genetics.113.160705</a>","mla":"Weissman, Daniel, and Oskar Hallatschek. “The Rate of Adaptation in Large Sexual Populations with Linear Chromosomes.” <i>Genetics</i>, vol. 196, no. 4, Genetics Society of America, 2014, pp. 1167–83, doi:<a href=\"https://doi.org/10.1534/genetics.113.160705\">10.1534/genetics.113.160705</a>.","ieee":"D. Weissman and O. Hallatschek, “The rate of adaptation in large sexual populations with linear chromosomes,” <i>Genetics</i>, vol. 196, no. 4. Genetics Society of America, pp. 1167–1183, 2014.","short":"D. Weissman, O. Hallatschek, Genetics 196 (2014) 1167–1183."},"scopus_import":"1","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"04","language":[{"iso":"eng"}],"quality_controlled":"1","issue":"4","department":[{"_id":"NiBa"}],"oa_version":"Submitted Version","oa":1,"volume":196,"ec_funded":1,"publication":"Genetics","abstract":[{"lang":"eng","text":"In large populations, multiple beneficial mutations may be simultaneously spreading. In asexual populations, these mutations must either arise on the same background or compete against each other. In sexual populations, recombination can bring together beneficial alleles from different backgrounds, but tightly linked alleles may still greatly interfere with each other. We show for well-mixed populations that when this interference is strong, the genome can be seen as consisting of many effectively asexual stretches linked together. The rate at which beneficial alleles fix is thus roughly proportional to the rate of recombination and depends only logarithmically on the mutation supply and the strength of selection. Our scaling arguments also allow us to predict, with reasonable accuracy, the fitness distribution of fixed mutations when the mutational effect sizes are broad. We focus on the regime in which crossovers occur more frequently than beneficial mutations, as is likely to be the case for many natural populations."}],"title":"The rate of adaptation in large sexual populations with linear chromosomes","arxiv":1,"project":[{"call_identifier":"FP7","name":"Limits to selection in biology and in evolutionary computation","_id":"25B07788-B435-11E9-9278-68D0E5697425","grant_number":"250152"}],"article_processing_charge":"No","external_id":{"arxiv":["1307.0737"],"isi":["000334179300022"]},"page":"1167 - 1183"},{"year":"2014","day":"01","file":[{"date_updated":"2020-07-14T12:45:20Z","content_type":"application/pdf","file_size":536154,"creator":"system","access_level":"open_access","checksum":"3cbe8623174709a8ceec2103246f8fe0","date_created":"2018-12-12T10:15:45Z","relation":"main_file","file_id":"5167","file_name":"IST-2016-419-v1+1_Ezard_et_al-2014-Functional_Ecology.pdf"}],"status":"public","pubrep_id":"419","publication_status":"published","date_updated":"2025-09-29T12:26:34Z","publisher":"Wiley-Blackwell","intvolume":"        28","isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"has_accepted_license":"1","date_published":"2014-06-01T00:00:00Z","ddc":["570"],"publist_id":"5186","author":[{"full_name":"Ezard, Thomas","first_name":"Thomas","last_name":"Ezard"},{"first_name":"Roshan","last_name":"Prizak","full_name":"Prizak, Roshan","id":"4456104E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Hoyle","first_name":"Rebecca","full_name":"Hoyle, Rebecca"}],"issue":"3","language":[{"iso":"eng"}],"oa_version":"Published Version","oa":1,"department":[{"_id":"NiBa"},{"_id":"GaTk"}],"acknowledgement":"Engineering and Physical Sciences Research Council. Grant Number: EP/H031928/1","doi":"10.1111/1365-2435.12207","date_created":"2018-12-11T11:54:40Z","_id":"1909","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"06","type":"journal_article","scopus_import":"1","citation":{"ista":"Ezard T, Prizak R, Hoyle R. 2014. The fitness costs of adaptation via phenotypic plasticity and maternal effects. Functional Ecology. 28(3), 693–701.","apa":"Ezard, T., Prizak, R., &#38; Hoyle, R. (2014). The fitness costs of adaptation via phenotypic plasticity and maternal effects. <i>Functional Ecology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/1365-2435.12207\">https://doi.org/10.1111/1365-2435.12207</a>","short":"T. Ezard, R. Prizak, R. Hoyle, Functional Ecology 28 (2014) 693–701.","ieee":"T. Ezard, R. Prizak, and R. Hoyle, “The fitness costs of adaptation via phenotypic plasticity and maternal effects,” <i>Functional Ecology</i>, vol. 28, no. 3. Wiley-Blackwell, pp. 693–701, 2014.","mla":"Ezard, Thomas, et al. “The Fitness Costs of Adaptation via Phenotypic Plasticity and Maternal Effects.” <i>Functional Ecology</i>, vol. 28, no. 3, Wiley-Blackwell, 2014, pp. 693–701, doi:<a href=\"https://doi.org/10.1111/1365-2435.12207\">10.1111/1365-2435.12207</a>.","ama":"Ezard T, Prizak R, Hoyle R. The fitness costs of adaptation via phenotypic plasticity and maternal effects. <i>Functional Ecology</i>. 2014;28(3):693-701. doi:<a href=\"https://doi.org/10.1111/1365-2435.12207\">10.1111/1365-2435.12207</a>","chicago":"Ezard, Thomas, Roshan Prizak, and Rebecca Hoyle. “The Fitness Costs of Adaptation via Phenotypic Plasticity and Maternal Effects.” <i>Functional Ecology</i>. Wiley-Blackwell, 2014. <a href=\"https://doi.org/10.1111/1365-2435.12207\">https://doi.org/10.1111/1365-2435.12207</a>."},"page":"693 - 701","article_processing_charge":"No","external_id":{"isi":["000335954900016"]},"publication":"Functional Ecology","abstract":[{"text":"Summary: Phenotypes are often environmentally dependent, which requires organisms to track environmental change. The challenge for organisms is to construct phenotypes using the most accurate environmental cue. Here, we use a quantitative genetic model of adaptation by additive genetic variance, within- and transgenerational plasticity via linear reaction norms and indirect genetic effects respectively. We show how the relative influence on the eventual phenotype of these components depends on the predictability of environmental change (fast or slow, sinusoidal or stochastic) and the developmental lag τ between when the environment is perceived and when selection acts. We then decompose expected mean fitness into three components (variance load, adaptation and fluctuation load) to study the fitness costs of within- and transgenerational plasticity. A strongly negative maternal effect coefficient m minimizes the variance load, but a strongly positive m minimises the fluctuation load. The adaptation term is maximized closer to zero, with positive or negative m preferred under different environmental scenarios. Phenotypic plasticity is higher when τ is shorter and when the environment changes frequently between seasonal extremes. Expected mean population fitness is highest away from highest observed levels of phenotypic plasticity. Within- and transgenerational plasticity act in concert to deliver well-adapted phenotypes, which emphasizes the need to study both simultaneously when investigating phenotypic evolution.","lang":"eng"}],"volume":28,"file_date_updated":"2020-07-14T12:45:20Z","title":"The fitness costs of adaptation via phenotypic plasticity and maternal effects"},{"acknowledgement":"FWF. Grant Number: P22058-B20","_id":"1910","doi":"10.1002/eji.201343681","date_created":"2018-12-11T11:54:40Z","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"02","citation":{"apa":"Konradi, S., Yasmin, N., Haslwanter, D., Weber, M., Gesslbauer, B., Sixt, M. K., &#38; Strobl, H. (2014). Langerhans cell maturation is accompanied by induction of N-cadherin and the transcriptional regulators of epithelial-mesenchymal transition ZEB1/2. <i>European Journal of Immunology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/eji.201343681\">https://doi.org/10.1002/eji.201343681</a>","ista":"Konradi S, Yasmin N, Haslwanter D, Weber M, Gesslbauer B, Sixt MK, Strobl H. 2014. Langerhans cell maturation is accompanied by induction of N-cadherin and the transcriptional regulators of epithelial-mesenchymal transition ZEB1/2. European Journal of Immunology. 44(2), 553–560.","ama":"Konradi S, Yasmin N, Haslwanter D, et al. Langerhans cell maturation is accompanied by induction of N-cadherin and the transcriptional regulators of epithelial-mesenchymal transition ZEB1/2. <i>European Journal of Immunology</i>. 2014;44(2):553-560. doi:<a href=\"https://doi.org/10.1002/eji.201343681\">10.1002/eji.201343681</a>","chicago":"Konradi, Sabine, Nighat Yasmin, Denise Haslwanter, Michele Weber, Bernd Gesslbauer, Michael K Sixt, and Herbert Strobl. “Langerhans Cell Maturation Is Accompanied by Induction of N-Cadherin and the Transcriptional Regulators of Epithelial-Mesenchymal Transition ZEB1/2.” <i>European Journal of Immunology</i>. Wiley-Blackwell, 2014. <a href=\"https://doi.org/10.1002/eji.201343681\">https://doi.org/10.1002/eji.201343681</a>.","short":"S. Konradi, N. Yasmin, D. Haslwanter, M. Weber, B. Gesslbauer, M.K. Sixt, H. Strobl, European Journal of Immunology 44 (2014) 553–560.","mla":"Konradi, Sabine, et al. “Langerhans Cell Maturation Is Accompanied by Induction of N-Cadherin and the Transcriptional Regulators of Epithelial-Mesenchymal Transition ZEB1/2.” <i>European Journal of Immunology</i>, vol. 44, no. 2, Wiley-Blackwell, 2014, pp. 553–60, doi:<a href=\"https://doi.org/10.1002/eji.201343681\">10.1002/eji.201343681</a>.","ieee":"S. Konradi <i>et al.</i>, “Langerhans cell maturation is accompanied by induction of N-cadherin and the transcriptional regulators of epithelial-mesenchymal transition ZEB1/2,” <i>European Journal of Immunology</i>, vol. 44, no. 2. Wiley-Blackwell, pp. 553–560, 2014."},"scopus_import":"1","language":[{"iso":"eng"}],"issue":"2","oa_version":"None","department":[{"_id":"MiSi"}],"volume":44,"abstract":[{"lang":"eng","text":"angerhans cells (LCs) are a unique subset of dendritic cells (DCs) that express epithelial adhesion molecules, allowing them to form contacts with epithelial cells and reside in epidermal/epithelial tissues. The dynamic regulation of epithelial adhesion plays a decisive role in the life cycle of LCs. It controls whether LCs remain immature and sessile within the epidermis or mature and egress to initiate immune responses. So far, the molecular machinery regulating epithelial adhesion molecules during LC maturation remains elusive. Here, we generated pure populations of immature human LCs in vitro to systematically probe for gene-expression changes during LC maturation. LCs down-regulate a set of epithelial genes including E-cadherin, while they upregulate the mesenchymal marker N-cadherin known to facilitate cell migration. In addition, N-cadherin is constitutively expressed by monocyte-derived DCs known to exhibit characteristics of both inflammatory-type and interstitial/dermal DCs. Moreover, the transcription factors ZEB1 and ZEB2 (ZEB is zinc-finger E-box-binding homeobox) are upregulated in migratory LCs. ZEB1 and ZEB2 have been shown to induce epithelial-to-mesenchymal transition (EMT) and invasive behavior in cancer cells undergoing metastasis. Our results provide the first hint that the molecular EMT machinery might facilitate LC mobilization. Moreover, our study suggests that N-cadherin plays a role during DC migration."}],"publication":"European Journal of Immunology","title":"Langerhans cell maturation is accompanied by induction of N-cadherin and the transcriptional regulators of epithelial-mesenchymal transition ZEB1/2","external_id":{"isi":["000331901200025"]},"article_processing_charge":"No","page":"553 - 560","publication_status":"published","status":"public","date_updated":"2025-09-29T12:26:01Z","publisher":"Wiley-Blackwell","year":"2014","day":"01","date_published":"2014-02-01T00:00:00Z","publist_id":"5185","author":[{"first_name":"Sabine","last_name":"Konradi","full_name":"Konradi, Sabine"},{"first_name":"Nighat","last_name":"Yasmin","full_name":"Yasmin, Nighat"},{"last_name":"Haslwanter","first_name":"Denise","full_name":"Haslwanter, Denise"},{"first_name":"Michele","last_name":"Weber","full_name":"Weber, Michele","id":"3A3FC708-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Bernd","last_name":"Gesslbauer","full_name":"Gesslbauer, Bernd"},{"orcid":"0000-0002-6620-9179","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","full_name":"Sixt, Michael K","last_name":"Sixt","first_name":"Michael K"},{"first_name":"Herbert","last_name":"Strobl","full_name":"Strobl, Herbert"}],"intvolume":"        44","isi":1},{"citation":{"chicago":"Engström, Alexander, and Patrik Noren. “Tverberg’s Theorem and Graph Coloring.” <i>Discrete &#38; Computational Geometry</i>. Springer, 2014. <a href=\"https://doi.org/10.1007/s00454-013-9556-3\">https://doi.org/10.1007/s00454-013-9556-3</a>.","ama":"Engström A, Noren P. Tverberg’s Theorem and Graph Coloring. <i>Discrete &#38; Computational Geometry</i>. 2014;51(1):207-220. doi:<a href=\"https://doi.org/10.1007/s00454-013-9556-3\">10.1007/s00454-013-9556-3</a>","mla":"Engström, Alexander, and Patrik Noren. “Tverberg’s Theorem and Graph Coloring.” <i>Discrete &#38; Computational Geometry</i>, vol. 51, no. 1, Springer, 2014, pp. 207–20, doi:<a href=\"https://doi.org/10.1007/s00454-013-9556-3\">10.1007/s00454-013-9556-3</a>.","ieee":"A. Engström and P. Noren, “Tverberg’s Theorem and Graph Coloring,” <i>Discrete &#38; Computational Geometry</i>, vol. 51, no. 1. Springer, pp. 207–220, 2014.","short":"A. Engström, P. Noren, Discrete &#38; Computational Geometry 51 (2014) 207–220.","apa":"Engström, A., &#38; Noren, P. (2014). Tverberg’s Theorem and Graph Coloring. <i>Discrete &#38; Computational Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s00454-013-9556-3\">https://doi.org/10.1007/s00454-013-9556-3</a>","ista":"Engström A, Noren P. 2014. Tverberg’s Theorem and Graph Coloring. Discrete &#38; Computational Geometry. 51(1), 207–220."},"scopus_import":"1","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","_id":"1911","date_created":"2018-12-11T11:54:40Z","doi":"10.1007/s00454-013-9556-3","acknowledgement":"Patrik Norén gratefully acknowledges support from the Wallenberg foundation","department":[{"_id":"CaUh"}],"oa_version":"None","language":[{"iso":"eng"}],"issue":"1","title":"Tverberg's Theorem and Graph Coloring","volume":51,"abstract":[{"lang":"eng","text":"The topological Tverberg theorem has been generalized in several directions by setting extra restrictions on the Tverberg partitions. Restricted Tverberg partitions, defined by the idea that certain points cannot be in the same part, are encoded with graphs. When two points are adjacent in the graph, they are not in the same part. If the restrictions are too harsh, then the topological Tverberg theorem fails. The colored Tverberg theorem corresponds to graphs constructed as disjoint unions of small complete graphs. Hell studied the case of paths and cycles. In graph theory these partitions are usually viewed as graph colorings. As explored by Aharoni, Haxell, Meshulam and others there are fundamental connections between several notions of graph colorings and topological combinatorics. For ordinary graph colorings it is enough to require that the number of colors q satisfy q&gt;Δ, where Δ is the maximal degree of the graph. It was proven by the first author using equivariant topology that if q&gt;Δ 2 then the topological Tverberg theorem still works. It is conjectured that q&gt;KΔ is also enough for some constant K, and in this paper we prove a fixed-parameter version of that conjecture. The required topological connectivity results are proven with shellability, which also strengthens some previous partial results where the topological connectivity was proven with the nerve lemma."}],"publication":"Discrete & Computational Geometry","article_processing_charge":"No","page":"207 - 220","external_id":{"isi":["000329619100007"]},"publisher":"Springer","date_updated":"2025-09-29T12:25:31Z","publication_status":"published","status":"public","day":"01","year":"2014","author":[{"first_name":"Alexander","last_name":"Engström","full_name":"Engström, Alexander"},{"first_name":"Patrik","last_name":"Noren","full_name":"Noren, Patrik","id":"46870C74-F248-11E8-B48F-1D18A9856A87"}],"publist_id":"5183","date_published":"2014-01-01T00:00:00Z","isi":1,"intvolume":"        51"},{"intvolume":"        31","isi":1,"corr_author":"1","ddc":["570"],"date_published":"2014-12-22T00:00:00Z","author":[{"last_name":"Compagnon","first_name":"Julien","id":"2E3E0988-F248-11E8-B48F-1D18A9856A87","full_name":"Compagnon, Julien"},{"full_name":"Barone, Vanessa","id":"419EECCC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2676-3367","first_name":"Vanessa","last_name":"Barone"},{"full_name":"Rajshekar, Srivarsha","first_name":"Srivarsha","last_name":"Rajshekar"},{"last_name":"Kottmeier","first_name":"Rita","full_name":"Kottmeier, Rita"},{"last_name":"Pranjic-Ferscha","first_name":"Kornelija","id":"4362B3C2-F248-11E8-B48F-1D18A9856A87","full_name":"Pranjic-Ferscha, Kornelija"},{"first_name":"Martin","last_name":"Behrndt","full_name":"Behrndt, Martin","id":"3ECECA3A-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Heisenberg","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J"}],"publist_id":"5182","year":"2014","day":"22","status":"public","pmid":1,"publication_status":"published","date_updated":"2026-06-18T18:12:41Z","publisher":"Cell Press","external_id":{"isi":["000346742900012"],"pmid":["25535919"]},"page":"774 - 783","article_processing_charge":"No","publication":"Developmental Cell","abstract":[{"text":"Kupffer's vesicle (KV) is the zebrafish organ of laterality, patterning the embryo along its left-right (LR) axis. Regional differences in cell shape within the lumen-lining KV epithelium are essential for its LR patterning function. However, the processes by which KV cells acquire their characteristic shapes are largely unknown. Here, we show that the notochord induces regional differences in cell shape within KV by triggering extracellular matrix (ECM) accumulation adjacent to anterior-dorsal (AD) regions of KV. This localized ECM deposition restricts apical expansion of lumen-lining epithelial cells in AD regions of KV during lumen growth. Our study provides mechanistic insight into the processes by which KV translates global embryonic patterning into regional cell shape differences required for its LR symmetry-breaking function.","lang":"eng"}],"volume":31,"title":"The notochord breaks bilateral symmetry by controlling cell shapes in the Zebrafish laterality organ","issue":"6","quality_controlled":"1","language":[{"iso":"eng"}],"oa":1,"oa_version":"Published Version","department":[{"_id":"CaHe"}],"acknowledgement":"We are grateful to members of the C.-P.H. lab, M. Concha, D. Siekhaus, and J. Vermot for comments on the manuscript and to M. Furutani-Seiki for sharing reagents. This work was supported by the Institute of Science and Technology Austria and an Alexander von Humboldt Foundation fellowship to J.C.","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pubmed/25535919"}],"date_created":"2018-12-11T11:54:41Z","doi":"10.1016/j.devcel.2014.11.003","related_material":{"record":[{"id":"961","status":"public","relation":"dissertation_contains"}]},"_id":"1912","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"12","type":"journal_article","scopus_import":"1","citation":{"ista":"Compagnon J, Barone V, Rajshekar S, Kottmeier R, Pranjic-Ferscha K, Behrndt M, Heisenberg C-PJ. 2014. The notochord breaks bilateral symmetry by controlling cell shapes in the Zebrafish laterality organ. Developmental Cell. 31(6), 774–783.","apa":"Compagnon, J., Barone, V., Rajshekar, S., Kottmeier, R., Pranjic-Ferscha, K., Behrndt, M., &#38; Heisenberg, C.-P. J. (2014). The notochord breaks bilateral symmetry by controlling cell shapes in the Zebrafish laterality organ. <i>Developmental Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.devcel.2014.11.003\">https://doi.org/10.1016/j.devcel.2014.11.003</a>","ieee":"J. Compagnon <i>et al.</i>, “The notochord breaks bilateral symmetry by controlling cell shapes in the Zebrafish laterality organ,” <i>Developmental Cell</i>, vol. 31, no. 6. Cell Press, pp. 774–783, 2014.","mla":"Compagnon, Julien, et al. “The Notochord Breaks Bilateral Symmetry by Controlling Cell Shapes in the Zebrafish Laterality Organ.” <i>Developmental Cell</i>, vol. 31, no. 6, Cell Press, 2014, pp. 774–83, doi:<a href=\"https://doi.org/10.1016/j.devcel.2014.11.003\">10.1016/j.devcel.2014.11.003</a>.","short":"J. Compagnon, V. Barone, S. Rajshekar, R. Kottmeier, K. Pranjic-Ferscha, M. Behrndt, C.-P.J. Heisenberg, Developmental Cell 31 (2014) 774–783.","chicago":"Compagnon, Julien, Vanessa Barone, Srivarsha Rajshekar, Rita Kottmeier, Kornelija Pranjic-Ferscha, Martin Behrndt, and Carl-Philipp J Heisenberg. “The Notochord Breaks Bilateral Symmetry by Controlling Cell Shapes in the Zebrafish Laterality Organ.” <i>Developmental Cell</i>. Cell Press, 2014. <a href=\"https://doi.org/10.1016/j.devcel.2014.11.003\">https://doi.org/10.1016/j.devcel.2014.11.003</a>.","ama":"Compagnon J, Barone V, Rajshekar S, et al. The notochord breaks bilateral symmetry by controlling cell shapes in the Zebrafish laterality organ. <i>Developmental Cell</i>. 2014;31(6):774-783. doi:<a href=\"https://doi.org/10.1016/j.devcel.2014.11.003\">10.1016/j.devcel.2014.11.003</a>"}},{"date_published":"2014-11-07T00:00:00Z","ddc":["570"],"author":[{"first_name":"Ivan","last_name":"Milenković","full_name":"Milenković, Ivan"},{"first_name":"Tatjana","last_name":"Petrov","full_name":"Petrov, Tatjana","id":"3D5811FC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9041-0905"},{"full_name":"Kovács, Gábor","first_name":"Gábor","last_name":"Kovács"}],"publist_id":"5181","isi":1,"intvolume":"        38","pmid":1,"publication_status":"published","status":"public","publisher":"Karger Publishers","article_type":"original","date_updated":"2026-06-18T18:13:04Z","day":"07","year":"2014","volume":38,"abstract":[{"lang":"eng","text":"Deposits of phosphorylated tau protein and convergence of pathology in the hippocampus are the hallmarks of neurodegenerative tauopathies. Thus we aimed to evaluate whether regional and cellular vulnerability patterns in the hippocampus distinguish tauopathies or are influenced by their concomitant presence. Methods: We created a heat map of phospho-tau (AT8) immunoreactivity patterns in 24 hippocampal subregions/layers in individuals with Alzheimer's disease (AD)-related neurofibrillary degeneration (n = 40), Pick's disease (n = 8), progressive supranuclear palsy (n = 7), corticobasal degeneration (n = 6), argyrophilic grain disease (AGD, n = 18), globular glial tauopathy (n = 5), and tau-astrogliopathy of the elderly (n = 10). AT8 immunoreactivity patterns were compared by mathematical analysis. Results: Our study reveals disease-specific hot spots and regional selective vulnerability for these disorders. The pattern of hippocampal AD-related tau pathology is strongly influenced by concomitant AGD. Mathematical analysis reveals that hippocampal involvement in primary tauopathies is distinguishable from early-stage AD-related neurofibrillary degeneration. Conclusion: Our data demonstrate disease-specific AT8 immunoreactivity patterns and hot spots in the hippocampus even in tauopathies, which primarily do not affect the hippocampus. These hot spots can be shifted to other regions by the co-occurrence of tauopathies like AGD. Our observations support the notion that globular glial tauopathies and tau-astrogliopathy of the elderly are distinct entities."}],"publication":"Dementia and Geriatric Cognitive Disorders","title":"Patterns of hippocampal tau pathology differentiate neurodegenerative dementias","article_processing_charge":"No","page":"375 - 388","external_id":{"pmid":["25195847"],"isi":["000344049900011"]},"_id":"1913","publication_identifier":{"issn":["1420-8008"]},"doi":"10.1159/000365548","date_created":"2018-12-11T11:54:41Z","acknowledgement":"This study was supported by the European Commission’s 7th Framework Programme under GA No. 278486, ‘DEVELAGE’.","main_file_link":[{"url":"https://kops.uni-konstanz.de/bitstream/123456789/42127/1/Milenkovic_2-17ivylo2up0798.pdf","open_access":"1"}],"citation":{"apa":"Milenković, I., Petrov, T., &#38; Kovács, G. (2014). Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. <i>Dementia and Geriatric Cognitive Disorders</i>. Karger Publishers. <a href=\"https://doi.org/10.1159/000365548\">https://doi.org/10.1159/000365548</a>","ista":"Milenković I, Petrov T, Kovács G. 2014. Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. Dementia and Geriatric Cognitive Disorders. 38(5–6), 375–388.","chicago":"Milenković, Ivan, Tatjana Petrov, and Gábor Kovács. “Patterns of Hippocampal Tau Pathology Differentiate Neurodegenerative Dementias.” <i>Dementia and Geriatric Cognitive Disorders</i>. Karger Publishers, 2014. <a href=\"https://doi.org/10.1159/000365548\">https://doi.org/10.1159/000365548</a>.","ama":"Milenković I, Petrov T, Kovács G. Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. <i>Dementia and Geriatric Cognitive Disorders</i>. 2014;38(5-6):375-388. doi:<a href=\"https://doi.org/10.1159/000365548\">10.1159/000365548</a>","mla":"Milenković, Ivan, et al. “Patterns of Hippocampal Tau Pathology Differentiate Neurodegenerative Dementias.” <i>Dementia and Geriatric Cognitive Disorders</i>, vol. 38, no. 5–6, Karger Publishers, 2014, pp. 375–88, doi:<a href=\"https://doi.org/10.1159/000365548\">10.1159/000365548</a>.","ieee":"I. Milenković, T. Petrov, and G. Kovács, “Patterns of hippocampal tau pathology differentiate neurodegenerative dementias,” <i>Dementia and Geriatric Cognitive Disorders</i>, vol. 38, no. 5–6. Karger Publishers, pp. 375–388, 2014.","short":"I. Milenković, T. Petrov, G. Kovács, Dementia and Geriatric Cognitive Disorders 38 (2014) 375–388."},"scopus_import":"1","type":"journal_article","month":"11","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","language":[{"iso":"eng"}],"issue":"5-6","department":[{"_id":"CaGu"}],"oa_version":"Published Version","oa":1},{"corr_author":"1","date_published":"2014-01-06T00:00:00Z","publist_id":"5180","author":[{"full_name":"Sauer, Michael","last_name":"Sauer","first_name":"Michael"},{"first_name":"Jirí","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"intvolume":"        24","isi":1,"status":"public","publication_status":"published","date_updated":"2025-09-29T12:23:35Z","publisher":"Cell Press","year":"2014","day":"06","abstract":[{"lang":"eng","text":"Targeting membrane proteins for degradation requires the sequential action of ESCRT sub-complexes ESCRT-0 to ESCRT-III. Although this machinery is generally conserved among kingdoms, plants lack the essential ESCRT-0 components. A new report closes this gap by identifying a novel protein family that substitutes for ESCRT-0 function in plants."}],"publication":"Current Biology","volume":24,"title":"Plant biology: Gatekeepers of the road to protein perdition","page":"R27 - R29","article_processing_charge":"No","external_id":{"isi":["000329501400011"]},"date_created":"2018-12-11T11:54:41Z","doi":"10.1016/j.cub.2013.11.019","_id":"1914","month":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","scopus_import":"1","citation":{"short":"M. Sauer, J. Friml, Current Biology 24 (2014) R27–R29.","mla":"Sauer, Michael, and Jiří Friml. “Plant Biology: Gatekeepers of the Road to Protein Perdition.” <i>Current Biology</i>, vol. 24, no. 1, Cell Press, 2014, pp. R27–29, doi:<a href=\"https://doi.org/10.1016/j.cub.2013.11.019\">10.1016/j.cub.2013.11.019</a>.","ieee":"M. Sauer and J. Friml, “Plant biology: Gatekeepers of the road to protein perdition,” <i>Current Biology</i>, vol. 24, no. 1. Cell Press, pp. R27–R29, 2014.","ama":"Sauer M, Friml J. Plant biology: Gatekeepers of the road to protein perdition. <i>Current Biology</i>. 2014;24(1):R27-R29. doi:<a href=\"https://doi.org/10.1016/j.cub.2013.11.019\">10.1016/j.cub.2013.11.019</a>","chicago":"Sauer, Michael, and Jiří Friml. “Plant Biology: Gatekeepers of the Road to Protein Perdition.” <i>Current Biology</i>. Cell Press, 2014. <a href=\"https://doi.org/10.1016/j.cub.2013.11.019\">https://doi.org/10.1016/j.cub.2013.11.019</a>.","ista":"Sauer M, Friml J. 2014. Plant biology: Gatekeepers of the road to protein perdition. Current Biology. 24(1), R27–R29.","apa":"Sauer, M., &#38; Friml, J. (2014). Plant biology: Gatekeepers of the road to protein perdition. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2013.11.019\">https://doi.org/10.1016/j.cub.2013.11.019</a>"},"issue":"1","language":[{"iso":"eng"}],"quality_controlled":"1","oa_version":"None","department":[{"_id":"JiFr"}]},{"intvolume":"        42","isi":1,"corr_author":"1","date_published":"2014-02-01T00:00:00Z","author":[{"last_name":"Chen","first_name":"Xu","id":"4E5ADCAA-F248-11E8-B48F-1D18A9856A87","full_name":"Chen, Xu"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jirí","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jirí"}],"publist_id":"5179","year":"2014","day":"01","status":"public","pmid":1,"publication_status":"published","date_updated":"2025-09-29T12:22:54Z","article_type":"original","publisher":"Portland Press","page":"212 - 218","article_processing_charge":"No","external_id":{"isi":["000333444400034"],"pmid":["24450654"]},"project":[{"grant_number":"282300","_id":"25716A02-B435-11E9-9278-68D0E5697425","name":"Polarity and subcellular dynamics in plants","call_identifier":"FP7"}],"publication":"Biochemical Society Transactions","abstract":[{"lang":"eng","text":"ROPs (Rho of plants) belong to a large family of plant-specific Rho-like small GTPases that function as essential molecular switches to control diverse cellular processes including cytoskeleton organization, cell polarization, cytokinesis, cell differentiation and vesicle trafficking. Although the machineries of vesicle trafficking and cell polarity in plants have been individually well addressed, how ROPs co-ordinate those processes is still largely unclear. Recent progress has been made towards an understanding of the coordination of ROP signalling and trafficking of PIN (PINFORMED) transporters for the plant hormone auxin in both root and leaf pavement cells. PIN transporters constantly shuttle between the endosomal compartments and the polar plasma membrane domains, therefore the modulation of PIN-dependent auxin transport between cells is a main developmental output of ROP-regulated vesicle trafficking. The present review focuses on these cellular mechanisms, especially the integration of ROP-based vesicle trafficking and plant cell polarity."}],"volume":42,"ec_funded":1,"title":"Rho-GTPase-regulated vesicle trafficking in plant cell polarity","issue":"1","quality_controlled":"1","language":[{"iso":"eng"}],"oa_version":"None","department":[{"_id":"JiFr"}],"acknowledgement":"This work was supported by the European Research Council [project ERC-2011-StG-20101109-PSDP], Central European Institute of Technology (CEITEC) [grant number CZ.1.05/1.1.00/02.0068], European Social Fund [grant number CZ.1.07/2.3.00/20.0043] and the Czec","date_created":"2018-12-11T11:54:41Z","doi":"10.1042/BST20130269","publication_identifier":{"eissn":["1470-8752"],"issn":["0300-5127"]},"_id":"1915","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"02","type":"journal_article","scopus_import":"1","citation":{"mla":"Chen, Xu, and Jiří Friml. “Rho-GTPase-Regulated Vesicle Trafficking in Plant Cell Polarity.” <i>Biochemical Society Transactions</i>, vol. 42, no. 1, Portland Press, 2014, pp. 212–18, doi:<a href=\"https://doi.org/10.1042/BST20130269\">10.1042/BST20130269</a>.","ieee":"X. Chen and J. Friml, “Rho-GTPase-regulated vesicle trafficking in plant cell polarity,” <i>Biochemical Society Transactions</i>, vol. 42, no. 1. Portland Press, pp. 212–218, 2014.","short":"X. Chen, J. Friml, Biochemical Society Transactions 42 (2014) 212–218.","chicago":"Chen, Xu, and Jiří Friml. “Rho-GTPase-Regulated Vesicle Trafficking in Plant Cell Polarity.” <i>Biochemical Society Transactions</i>. Portland Press, 2014. <a href=\"https://doi.org/10.1042/BST20130269\">https://doi.org/10.1042/BST20130269</a>.","ama":"Chen X, Friml J. Rho-GTPase-regulated vesicle trafficking in plant cell polarity. <i>Biochemical Society Transactions</i>. 2014;42(1):212-218. doi:<a href=\"https://doi.org/10.1042/BST20130269\">10.1042/BST20130269</a>","ista":"Chen X, Friml J. 2014. Rho-GTPase-regulated vesicle trafficking in plant cell polarity. Biochemical Society Transactions. 42(1), 212–218.","apa":"Chen, X., &#38; Friml, J. (2014). Rho-GTPase-regulated vesicle trafficking in plant cell polarity. <i>Biochemical Society Transactions</i>. Portland Press. <a href=\"https://doi.org/10.1042/BST20130269\">https://doi.org/10.1042/BST20130269</a>"}},{"intvolume":"       343","isi":1,"publist_id":"5178","author":[{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","full_name":"Novarino, Gaia","orcid":"0000-0002-7673-7178","last_name":"Novarino","first_name":"Gaia"},{"full_name":"Fenstermaker, Ali","last_name":"Fenstermaker","first_name":"Ali"},{"full_name":"Zaki, Maha","last_name":"Zaki","first_name":"Maha"},{"full_name":"Hofree, Matan","last_name":"Hofree","first_name":"Matan"},{"full_name":"Silhavy, Jennifer","first_name":"Jennifer","last_name":"Silhavy"},{"last_name":"Heiberg","first_name":"Andrew","full_name":"Heiberg, Andrew"},{"full_name":"Abdellateef, Mostafa","last_name":"Abdellateef","first_name":"Mostafa"},{"full_name":"Rosti, Başak","first_name":"Başak","last_name":"Rosti"},{"first_name":"Eric","last_name":"Scott","full_name":"Scott, Eric"},{"full_name":"Mansour, Lobna","first_name":"Lobna","last_name":"Mansour"},{"first_name":"Amira","last_name":"Masri","full_name":"Masri, Amira"},{"full_name":"Kayserili, Hülya","first_name":"Hülya","last_name":"Kayserili"},{"full_name":"Al Aama, Jumana","first_name":"Jumana","last_name":"Al Aama"},{"first_name":"Ghada","last_name":"Abdel Salam","full_name":"Abdel Salam, Ghada"},{"full_name":"Karminejad, Ariana","last_name":"Karminejad","first_name":"Ariana"},{"first_name":"Majdi","last_name":"Kara","full_name":"Kara, Majdi"},{"full_name":"Kara, Bülent","first_name":"Bülent","last_name":"Kara"},{"last_name":"Bozorgmehri","first_name":"Bita","full_name":"Bozorgmehri, Bita"},{"full_name":"Ben Omran, Tawfeg","first_name":"Tawfeg","last_name":"Ben Omran"},{"first_name":"Faezeh","last_name":"Mojahedi","full_name":"Mojahedi, Faezeh"},{"last_name":"Mahmoud","first_name":"Iman","full_name":"Mahmoud, Iman"},{"last_name":"Bouslam","first_name":"Naïma","full_name":"Bouslam, Naïma"},{"full_name":"Bouhouche, Ahmed","last_name":"Bouhouche","first_name":"Ahmed"},{"first_name":"Ali","last_name":"Benomar","full_name":"Benomar, Ali"},{"full_name":"Hanein, Sylvain","first_name":"Sylvain","last_name":"Hanein"},{"full_name":"Raymond, Laure","first_name":"Laure","last_name":"Raymond"},{"full_name":"Forlani, Sylvie","first_name":"Sylvie","last_name":"Forlani"},{"full_name":"Mascaro, Massimo","last_name":"Mascaro","first_name":"Massimo"},{"full_name":"Selim, Laila","first_name":"Laila","last_name":"Selim"},{"full_name":"Shehata, Nabil","first_name":"Nabil","last_name":"Shehata"},{"full_name":"Al Allawi, Nasir","first_name":"Nasir","last_name":"Al Allawi"},{"last_name":"Bindu","first_name":"Parayil","full_name":"Bindu, Parayil"},{"last_name":"Azam","first_name":"Matloob","full_name":"Azam, Matloob"},{"full_name":"Günel, Murat","first_name":"Murat","last_name":"Günel"},{"full_name":"Caglayan, Ahmet","last_name":"Caglayan","first_name":"Ahmet"},{"full_name":"Bilgüvar, Kaya","first_name":"Kaya","last_name":"Bilgüvar"},{"first_name":"Aslihan","last_name":"Tolun","full_name":"Tolun, Aslihan"},{"last_name":"Issa","first_name":"Mahmoud","full_name":"Issa, Mahmoud"},{"full_name":"Schroth, Jana","last_name":"Schroth","first_name":"Jana"},{"first_name":"Emily","last_name":"Spencer","full_name":"Spencer, Emily"},{"full_name":"Rosti, Rasim","last_name":"Rosti","first_name":"Rasim"},{"first_name":"Naiara","last_name":"Akizu","full_name":"Akizu, Naiara"},{"last_name":"Vaux","first_name":"Keith","full_name":"Vaux, Keith"},{"full_name":"Johansen, Anide","last_name":"Johansen","first_name":"Anide"},{"first_name":"Alice","last_name":"Koh","full_name":"Koh, Alice"},{"last_name":"Megahed","first_name":"Hisham","full_name":"Megahed, Hisham"},{"full_name":"Dürr, Alexandra","first_name":"Alexandra","last_name":"Dürr"},{"full_name":"Brice, Alexis","first_name":"Alexis","last_name":"Brice"},{"last_name":"Stévanin","first_name":"Giovanni","full_name":"Stévanin, Giovanni"},{"full_name":"Gabriel, Stacy","first_name":"Stacy","last_name":"Gabriel"},{"full_name":"Ideker, Trey","first_name":"Trey","last_name":"Ideker"},{"full_name":"Gleeson, Joseph","first_name":"Joseph","last_name":"Gleeson"}],"date_published":"2014-01-31T00:00:00Z","year":"2014","day":"31","date_updated":"2025-09-29T12:22:05Z","publisher":"American Association for the Advancement of Science","article_type":"original","status":"public","pmid":1,"publication_status":"published","article_processing_charge":"No","page":"506 - 511","external_id":{"isi":["000330343700038"],"pmid":["24482476"]},"title":"Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders","publication":"Science","abstract":[{"lang":"eng","text":"Hereditary spastic paraplegias (HSPs) are neurodegenerative motor neuron diseases characterized by progressive age-dependent loss of corticospinal motor tract function. Although the genetic basis is partly understood, only a fraction of cases can receive a genetic diagnosis, and a global view of HSP is lacking. By using whole-exome sequencing in combination with network analysis, we identified 18 previously unknown putative HSP genes and validated nearly all of these genes functionally or genetically. The pathways highlighted by these mutations link HSP to cellular transport, nucleotide metabolism, and synapse and axon development. Network analysis revealed a host of further candidate genes, of which three were mutated in our cohort. Our analysis links HSP to other neurodegenerative disorders and can facilitate gene discovery and mechanistic understanding of disease."}],"volume":343,"oa":1,"oa_version":"Submitted Version","department":[{"_id":"GaNo"}],"issue":"6170","language":[{"iso":"eng"}],"quality_controlled":"1","month":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","scopus_import":"1","citation":{"chicago":"Novarino, Gaia, Ali Fenstermaker, Maha Zaki, Matan Hofree, Jennifer Silhavy, Andrew Heiberg, Mostafa Abdellateef, et al. “Exome Sequencing Links Corticospinal Motor Neuron Disease to Common Neurodegenerative Disorders.” <i>Science</i>. American Association for the Advancement of Science, 2014. <a href=\"https://doi.org/10.1126/science.1247363\">https://doi.org/10.1126/science.1247363</a>.","ama":"Novarino G, Fenstermaker A, Zaki M, et al. Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders. <i>Science</i>. 2014;343(6170):506-511. doi:<a href=\"https://doi.org/10.1126/science.1247363\">10.1126/science.1247363</a>","ieee":"G. Novarino <i>et al.</i>, “Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders,” <i>Science</i>, vol. 343, no. 6170. American Association for the Advancement of Science, pp. 506–511, 2014.","mla":"Novarino, Gaia, et al. “Exome Sequencing Links Corticospinal Motor Neuron Disease to Common Neurodegenerative Disorders.” <i>Science</i>, vol. 343, no. 6170, American Association for the Advancement of Science, 2014, pp. 506–11, doi:<a href=\"https://doi.org/10.1126/science.1247363\">10.1126/science.1247363</a>.","short":"G. Novarino, A. Fenstermaker, M. Zaki, M. Hofree, J. Silhavy, A. Heiberg, M. Abdellateef, B. Rosti, E. Scott, L. Mansour, A. Masri, H. Kayserili, J. Al Aama, G. Abdel Salam, A. Karminejad, M. Kara, B. Kara, B. Bozorgmehri, T. Ben Omran, F. Mojahedi, I. Mahmoud, N. Bouslam, A. Bouhouche, A. Benomar, S. Hanein, L. Raymond, S. Forlani, M. Mascaro, L. Selim, N. Shehata, N. Al Allawi, P. Bindu, M. Azam, M. Günel, A. Caglayan, K. Bilgüvar, A. Tolun, M. Issa, J. Schroth, E. Spencer, R. Rosti, N. Akizu, K. Vaux, A. Johansen, A. Koh, H. Megahed, A. Dürr, A. Brice, G. Stévanin, S. Gabriel, T. Ideker, J. Gleeson, Science 343 (2014) 506–511.","apa":"Novarino, G., Fenstermaker, A., Zaki, M., Hofree, M., Silhavy, J., Heiberg, A., … Gleeson, J. (2014). Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1247363\">https://doi.org/10.1126/science.1247363</a>","ista":"Novarino G, Fenstermaker A, Zaki M, Hofree M, Silhavy J, Heiberg A, Abdellateef M, Rosti B, Scott E, Mansour L, Masri A, Kayserili H, Al Aama J, Abdel Salam G, Karminejad A, Kara M, Kara B, Bozorgmehri B, Ben Omran T, Mojahedi F, Mahmoud I, Bouslam N, Bouhouche A, Benomar A, Hanein S, Raymond L, Forlani S, Mascaro M, Selim L, Shehata N, Al Allawi N, Bindu P, Azam M, Günel M, Caglayan A, Bilgüvar K, Tolun A, Issa M, Schroth J, Spencer E, Rosti R, Akizu N, Vaux K, Johansen A, Koh A, Megahed H, Dürr A, Brice A, Stévanin G, Gabriel S, Ideker T, Gleeson J. 2014. Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders. Science. 343(6170), 506–511."},"acknowledgement":"Supported by the Deutsche Forschungsgemeinschaft (G.N.)","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157572/","open_access":"1"}],"doi":"10.1126/science.1247363","date_created":"2018-12-11T11:54:42Z","_id":"1916"},{"article_processing_charge":"No","external_id":{"isi":["000332309600046"],"pmid":["24578577"]},"page":"1025 - 1028","title":"Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling","abstract":[{"lang":"eng","text":"Auxin-binding protein 1 (ABP1) was discovered nearly 40 years ago and was shown to be essential for plant development and morphogenesis, but its mode of action remains unclear. Here, we report that the plasma membrane-localized transmembrane kinase (TMK) receptor-like kinases interact with ABP1 and transduce auxin signal to activate plasma membrane-associated ROPs [Rho-like guanosine triphosphatases (GTPase) from plants], leading to changes in the cytoskeleton and the shape of leaf pavement cells in Arabidopsis. The interaction between ABP1 and TMK at the cell surface is induced by auxin and requires ABP1 sensing of auxin. These findings show that TMK proteins and ABP1 form a cell surface auxin perception complex that activates ROP signaling pathways, regulating nontranscriptional cytoplasmic responses and associated fundamental processes."}],"publication":"Science","volume":343,"department":[{"_id":"JiFr"}],"oa_version":"Submitted Version","oa":1,"issue":"6174","language":[{"iso":"eng"}],"quality_controlled":"1","scopus_import":"1","citation":{"apa":"Xu, T., Dai, N., Chen, J., Nagawa, S., Cao, M., Li, H., … Yang, Z. (2014). Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1245125\">https://doi.org/10.1126/science.1245125</a>","ista":"Xu T, Dai N, Chen J, Nagawa S, Cao M, Li H, Zhou Z, Chen X, De Rycke R, Rakusová H, Wang W, Jones A, Friml J, Patterson S, Bleecker A, Yang Z. 2014. Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling. Science. 343(6174), 1025–1028.","chicago":"Xu, Tongda, Ning Dai, Jisheng Chen, Shingo Nagawa, Min Cao, Hongjiang Li, Zimin Zhou, et al. “Cell Surface ABP1-TMK Auxin Sensing Complex Activates ROP GTPase Signaling.” <i>Science</i>. American Association for the Advancement of Science, 2014. <a href=\"https://doi.org/10.1126/science.1245125\">https://doi.org/10.1126/science.1245125</a>.","ama":"Xu T, Dai N, Chen J, et al. Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling. <i>Science</i>. 2014;343(6174):1025-1028. doi:<a href=\"https://doi.org/10.1126/science.1245125\">10.1126/science.1245125</a>","mla":"Xu, Tongda, et al. “Cell Surface ABP1-TMK Auxin Sensing Complex Activates ROP GTPase Signaling.” <i>Science</i>, vol. 343, no. 6174, American Association for the Advancement of Science, 2014, pp. 1025–28, doi:<a href=\"https://doi.org/10.1126/science.1245125\">10.1126/science.1245125</a>.","ieee":"T. Xu <i>et al.</i>, “Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling,” <i>Science</i>, vol. 343, no. 6174. American Association for the Advancement of Science, pp. 1025–1028, 2014.","short":"T. Xu, N. Dai, J. Chen, S. Nagawa, M. Cao, H. Li, Z. Zhou, X. Chen, R. De Rycke, H. Rakusová, W. Wang, A. Jones, J. Friml, S. Patterson, A. Bleecker, Z. Yang, Science 343 (2014) 1025–1028."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"02","type":"journal_article","doi":"10.1126/science.1245125","date_created":"2018-12-11T11:54:42Z","_id":"1917","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166562/"}],"acknowledgement":"Supported by the intramural research program of the National Institute of Arthritis and Musculoskeletal and Skin Diseases and by its Laboratory Animal Care and Use Section and Flow Cytometry Group, Office of Science and Technology","isi":1,"intvolume":"       343","publist_id":"5177","author":[{"last_name":"Xu","first_name":"Tongda","full_name":"Xu, Tongda"},{"full_name":"Dai, Ning","last_name":"Dai","first_name":"Ning"},{"full_name":"Chen, Jisheng","last_name":"Chen","first_name":"Jisheng"},{"last_name":"Nagawa","first_name":"Shingo","full_name":"Nagawa, Shingo"},{"last_name":"Cao","first_name":"Min","full_name":"Cao, Min"},{"orcid":"0000-0001-5039-9660","full_name":"Li, Hongjiang","id":"33CA54A6-F248-11E8-B48F-1D18A9856A87","first_name":"Hongjiang","last_name":"Li"},{"last_name":"Zhou","first_name":"Zimin","full_name":"Zhou, Zimin"},{"last_name":"Chen","first_name":"Xu","id":"4E5ADCAA-F248-11E8-B48F-1D18A9856A87","full_name":"Chen, Xu"},{"last_name":"De Rycke","first_name":"Riet","full_name":"De Rycke, Riet"},{"first_name":"Hana","last_name":"Rakusová","full_name":"Rakusová, Hana"},{"full_name":"Wang, Wen","first_name":"Wen","last_name":"Wang"},{"full_name":"Jones, Alan","last_name":"Jones","first_name":"Alan"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jirí","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jirí"},{"full_name":"Patterson, Sara","first_name":"Sara","last_name":"Patterson"},{"first_name":"Anthony","last_name":"Bleecker","full_name":"Bleecker, Anthony"},{"full_name":"Yang, Zhenbiao","last_name":"Yang","first_name":"Zhenbiao"}],"date_published":"2014-02-28T00:00:00Z","day":"28","year":"2014","article_type":"original","publisher":"American Association for the Advancement of Science","date_updated":"2025-09-29T12:20:10Z","status":"public","pmid":1,"publication_status":"published"},{"date_created":"2018-12-11T11:54:42Z","doi":"10.1142/S0129055X13500219","_id":"1918","main_file_link":[{"url":"http://arxiv.org/abs/1301.5370","open_access":"1"}],"scopus_import":"1","citation":{"ista":"Bellazzini J, Frank R, Lieb É, Seiringer R. 2014. Existence of ground states for negative ions at the binding threshold. Reviews in Mathematical Physics. 26(1), 1350021.","apa":"Bellazzini, J., Frank, R., Lieb, É., &#38; Seiringer, R. (2014). Existence of ground states for negative ions at the binding threshold. <i>Reviews in Mathematical Physics</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S0129055X13500219\">https://doi.org/10.1142/S0129055X13500219</a>","short":"J. Bellazzini, R. Frank, É. Lieb, R. Seiringer, Reviews in Mathematical Physics 26 (2014).","ieee":"J. Bellazzini, R. Frank, É. Lieb, and R. Seiringer, “Existence of ground states for negative ions at the binding threshold,” <i>Reviews in Mathematical Physics</i>, vol. 26, no. 1. World Scientific Publishing, 2014.","mla":"Bellazzini, Jacopo, et al. “Existence of Ground States for Negative Ions at the Binding Threshold.” <i>Reviews in Mathematical Physics</i>, vol. 26, no. 1, 1350021, World Scientific Publishing, 2014, doi:<a href=\"https://doi.org/10.1142/S0129055X13500219\">10.1142/S0129055X13500219</a>.","ama":"Bellazzini J, Frank R, Lieb É, Seiringer R. Existence of ground states for negative ions at the binding threshold. <i>Reviews in Mathematical Physics</i>. 2014;26(1). doi:<a href=\"https://doi.org/10.1142/S0129055X13500219\">10.1142/S0129055X13500219</a>","chicago":"Bellazzini, Jacopo, Rupert Frank, Élliott Lieb, and Robert Seiringer. “Existence of Ground States for Negative Ions at the Binding Threshold.” <i>Reviews in Mathematical Physics</i>. World Scientific Publishing, 2014. <a href=\"https://doi.org/10.1142/S0129055X13500219\">https://doi.org/10.1142/S0129055X13500219</a>."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"02","type":"journal_article","issue":"1","quality_controlled":"1","language":[{"iso":"eng"}],"department":[{"_id":"RoSe"}],"oa_version":"Submitted Version","oa":1,"publication":"Reviews in Mathematical Physics","abstract":[{"text":"As the nuclear charge Z is continuously decreased an N-electron atom undergoes a binding-unbinding transition. We investigate whether the electrons remain bound and whether the radius of the system stays finite as the critical value Zc is approached. Existence of a ground state at Zc is shown under the condition Zc &lt; N-K, where K is the maximal number of electrons that can be removed at Zc without changing the energy.","lang":"eng"}],"volume":26,"title":"Existence of ground states for negative ions at the binding threshold","article_number":"1350021","arxiv":1,"project":[{"_id":"26450934-B435-11E9-9278-68D0E5697425","name":"NSERC Postdoctoral fellowship"}],"article_processing_charge":"No","external_id":{"arxiv":["1301.5370"],"isi":["000329928300004"]},"status":"public","publication_status":"published","publisher":"World Scientific Publishing","date_updated":"2025-09-29T12:19:33Z","day":"01","year":"2014","date_published":"2014-02-01T00:00:00Z","corr_author":"1","author":[{"first_name":"Jacopo","last_name":"Bellazzini","full_name":"Bellazzini, Jacopo"},{"full_name":"Frank, Rupert","first_name":"Rupert","last_name":"Frank"},{"last_name":"Lieb","first_name":"Élliott","full_name":"Lieb, Élliott"},{"full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer"}],"publist_id":"5176","isi":1,"intvolume":"        26"},{"isi":1,"intvolume":"       111","date_published":"2014-01-07T00:00:00Z","corr_author":"1","author":[{"full_name":"Aziz, Wajeeha","last_name":"Aziz","first_name":"Wajeeha"},{"first_name":"Wen","last_name":"Wang","full_name":"Wang, Wen"},{"last_name":"Kesaf","first_name":"Sebnem","id":"401AB46C-F248-11E8-B48F-1D18A9856A87","full_name":"Kesaf, Sebnem"},{"last_name":"Mohamed","first_name":"Alsayed","full_name":"Mohamed, Alsayed"},{"last_name":"Fukazawa","first_name":"Yugo","full_name":"Fukazawa, Yugo"},{"last_name":"Shigemoto","first_name":"Ryuichi","orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","full_name":"Shigemoto, Ryuichi"}],"publist_id":"5175","day":"07","year":"2014","status":"public","publication_status":"published","publisher":"National Academy of Sciences","date_updated":"2025-09-29T12:19:01Z","article_processing_charge":"No","page":"E194 - E202","external_id":{"isi":["000329350700025"]},"abstract":[{"text":"Long-lasting memories are formed when the stimulus is temporally distributed (spacing effect). However, the synaptic mechanisms underlying this robust phenomenon and the precise time course of the synaptic modifications that occur during learning remain unclear. Here we examined the adaptation of horizontal optokinetic response in mice that underwent 1 h of massed and spaced training at varying intervals. Despite similar acquisition by all training protocols, 1 h of spacing produced the highest memory retention at 24 h, which lasted for 1 mo. The distinct kinetics of memory are strongly correlated with the reduction of floccular parallel fiber-Purkinje cell synapses but not with AMPA receptor (AMPAR) number and synapse size. After the spaced training, we observed 25%, 23%, and 12% reduction in AMPAR density, synapse size, and synapse number, respectively. Four hours after the spaced training, half of the synapses and Purkinje cell spines had been eliminated, whereas AMPAR density and synapse size were recovered in remaining synapses. Surprisingly, massed training also produced long-term memory and halving of synapses; however, this occurred slowly over days, and the memory lasted for only 1 wk. This distinct kinetics of structural plasticity may serve as a basis for unique temporal profiles in the formation and decay of memory with or without intervals.","lang":"eng"}],"publication":"PNAS","volume":111,"title":"Distinct kinetics of synaptic structural plasticity, memory formation, and memory decay in massed and spaced learning","issue":"1","language":[{"iso":"eng"}],"department":[{"_id":"RySh"}],"oa":1,"oa_version":"Submitted Version","doi":"10.1073/pnas.1303317110","date_created":"2018-12-11T11:54:43Z","_id":"1919","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890840/","open_access":"1"}],"acknowledgement":"his work was supported by Solution Oriented Research for Science and Technology (R.S.), Core Research for Evolutional Science and Technology, Japan Science and Technology Agency (Y.F.), and Grants-in-Aid for Scientific Research on Priority Areas-Molecular Brain Sciences 16300114 (to R.S.) and 18022043 (to Y.F.).","scopus_import":"1","citation":{"short":"W. Aziz, W. Wang, S. Kesaf, A. Mohamed, Y. Fukazawa, R. Shigemoto, PNAS 111 (2014) E194–E202.","ieee":"W. Aziz, W. Wang, S. Kesaf, A. Mohamed, Y. Fukazawa, and R. Shigemoto, “Distinct kinetics of synaptic structural plasticity, memory formation, and memory decay in massed and spaced learning,” <i>PNAS</i>, vol. 111, no. 1. National Academy of Sciences, pp. E194–E202, 2014.","mla":"Aziz, Wajeeha, et al. “Distinct Kinetics of Synaptic Structural Plasticity, Memory Formation, and Memory Decay in Massed and Spaced Learning.” <i>PNAS</i>, vol. 111, no. 1, National Academy of Sciences, 2014, pp. E194–202, doi:<a href=\"https://doi.org/10.1073/pnas.1303317110\">10.1073/pnas.1303317110</a>.","ama":"Aziz W, Wang W, Kesaf S, Mohamed A, Fukazawa Y, Shigemoto R. Distinct kinetics of synaptic structural plasticity, memory formation, and memory decay in massed and spaced learning. <i>PNAS</i>. 2014;111(1):E194-E202. doi:<a href=\"https://doi.org/10.1073/pnas.1303317110\">10.1073/pnas.1303317110</a>","chicago":"Aziz, Wajeeha, Wen Wang, Sebnem Kesaf, Alsayed Mohamed, Yugo Fukazawa, and Ryuichi Shigemoto. “Distinct Kinetics of Synaptic Structural Plasticity, Memory Formation, and Memory Decay in Massed and Spaced Learning.” <i>PNAS</i>. National Academy of Sciences, 2014. <a href=\"https://doi.org/10.1073/pnas.1303317110\">https://doi.org/10.1073/pnas.1303317110</a>.","ista":"Aziz W, Wang W, Kesaf S, Mohamed A, Fukazawa Y, Shigemoto R. 2014. Distinct kinetics of synaptic structural plasticity, memory formation, and memory decay in massed and spaced learning. PNAS. 111(1), E194–E202.","apa":"Aziz, W., Wang, W., Kesaf, S., Mohamed, A., Fukazawa, Y., &#38; Shigemoto, R. (2014). Distinct kinetics of synaptic structural plasticity, memory formation, and memory decay in massed and spaced learning. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1303317110\">https://doi.org/10.1073/pnas.1303317110</a>"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","type":"journal_article"},{"day":"07","year":"2014","publisher":"National Academy of Sciences","date_updated":"2025-09-29T12:18:06Z","publication_status":"published","status":"public","isi":1,"intvolume":"       111","publist_id":"5174","author":[{"full_name":"Wang, Wen","last_name":"Wang","first_name":"Wen"},{"full_name":"Nakadate, Kazuhiko","first_name":"Kazuhiko","last_name":"Nakadate"},{"full_name":"Masugi Tokita, Miwako","first_name":"Miwako","last_name":"Masugi Tokita"},{"last_name":"Shutoh","first_name":"Fumihiro","full_name":"Shutoh, Fumihiro"},{"full_name":"Aziz, Wajeeha","first_name":"Wajeeha","last_name":"Aziz"},{"last_name":"Tarusawa","first_name":"Etsuko","full_name":"Tarusawa, Etsuko"},{"last_name":"Lörincz","first_name":"Andrea","full_name":"Lörincz, Andrea"},{"last_name":"Molnár","first_name":"Elek","full_name":"Molnár, Elek"},{"id":"401AB46C-F248-11E8-B48F-1D18A9856A87","full_name":"Kesaf, Sebnem","last_name":"Kesaf","first_name":"Sebnem"},{"full_name":"Li, Yunqing","first_name":"Yunqing","last_name":"Li"},{"full_name":"Fukazawa, Yugo","last_name":"Fukazawa","first_name":"Yugo"},{"full_name":"Nagao, Soichi","first_name":"Soichi","last_name":"Nagao"},{"full_name":"Shigemoto, Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444","first_name":"Ryuichi","last_name":"Shigemoto"}],"date_published":"2014-01-07T00:00:00Z","corr_author":"1","department":[{"_id":"RySh"}],"oa_version":"Submitted Version","oa":1,"language":[{"iso":"eng"}],"issue":"1","citation":{"apa":"Wang, W., Nakadate, K., Masugi Tokita, M., Shutoh, F., Aziz, W., Tarusawa, E., … Shigemoto, R. (2014). Distinct cerebellar engrams in short-term and long-term motor learning. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1315541111\">https://doi.org/10.1073/pnas.1315541111</a>","ista":"Wang W, Nakadate K, Masugi Tokita M, Shutoh F, Aziz W, Tarusawa E, Lörincz A, Molnár E, Kesaf S, Li Y, Fukazawa Y, Nagao S, Shigemoto R. 2014. Distinct cerebellar engrams in short-term and long-term motor learning. PNAS. 111(1), E188–E193.","ama":"Wang W, Nakadate K, Masugi Tokita M, et al. Distinct cerebellar engrams in short-term and long-term motor learning. <i>PNAS</i>. 2014;111(1):E188-E193. doi:<a href=\"https://doi.org/10.1073/pnas.1315541111\">10.1073/pnas.1315541111</a>","chicago":"Wang, Wen, Kazuhiko Nakadate, Miwako Masugi Tokita, Fumihiro Shutoh, Wajeeha Aziz, Etsuko Tarusawa, Andrea Lörincz, et al. “Distinct Cerebellar Engrams in Short-Term and Long-Term Motor Learning.” <i>PNAS</i>. National Academy of Sciences, 2014. <a href=\"https://doi.org/10.1073/pnas.1315541111\">https://doi.org/10.1073/pnas.1315541111</a>.","short":"W. Wang, K. Nakadate, M. Masugi Tokita, F. Shutoh, W. Aziz, E. Tarusawa, A. Lörincz, E. Molnár, S. Kesaf, Y. Li, Y. Fukazawa, S. Nagao, R. Shigemoto, PNAS 111 (2014) E188–E193.","mla":"Wang, Wen, et al. “Distinct Cerebellar Engrams in Short-Term and Long-Term Motor Learning.” <i>PNAS</i>, vol. 111, no. 1, National Academy of Sciences, 2014, pp. E188–93, doi:<a href=\"https://doi.org/10.1073/pnas.1315541111\">10.1073/pnas.1315541111</a>.","ieee":"W. Wang <i>et al.</i>, “Distinct cerebellar engrams in short-term and long-term motor learning,” <i>PNAS</i>, vol. 111, no. 1. National Academy of Sciences, pp. E188–E193, 2014."},"scopus_import":"1","type":"journal_article","month":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1920","date_created":"2018-12-11T11:54:43Z","doi":"10.1073/pnas.1315541111","acknowledgement":"This work was supported by Solution-Oriented Research for Science and Technology from the Japan Science and Technology Agency; Ministry of Education, Culture, Sports, Science and Technology of Japan Grant 16300114 (to R.S.).","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890858/","open_access":"1"}],"external_id":{"isi":["000329350700024"]},"article_processing_charge":"No","page":"E188 - E193","title":"Distinct cerebellar engrams in short-term and long-term motor learning","volume":111,"abstract":[{"lang":"eng","text":"Cerebellar motor learning is suggested to be caused by long-term plasticity of excitatory parallel fiber-Purkinje cell (PF-PC) synapses associated with changes in the number of synaptic AMPA-type glutamate receptors (AMPARs). However, whether the AMPARs decrease or increase in individual PF-PC synapses occurs in physiological motor learning and accounts for memory that lasts over days remains elusive. We combined quantitative SDS-digested freeze-fracture replica labeling for AMPAR and physical dissector electron microscopy with a simple model of cerebellar motor learning, adaptation of horizontal optokinetic response (HOKR) in mouse. After 1-h training of HOKR, short-term adaptation (STA) was accompanied with transient decrease in AMPARs by 28% in target PF-PC synapses. STA was well correlated with AMPAR decrease in individual animals and both STA and AMPAR decrease recovered to basal levels within 24 h. Surprisingly, long-termadaptation (LTA) after five consecutive daily trainings of 1-h HOKR did not alter the number of AMPARs in PF-PC synapses but caused gradual and persistent synapse elimination by 45%, with corresponding PC spine loss by the fifth training day. Furthermore, recovery of LTA after 2 wk was well correlated with increase of PF-PC synapses to the control level. Our findings indicate that the AMPARs decrease in PF-PC synapses and the elimination of these synapses are in vivo engrams in short- and long-term motor learning, respectively, showing a unique type of synaptic plasticity that may contribute to memory consolidation."}],"publication":"PNAS"},{"publist_id":"5173","author":[{"full_name":"Tejos, Ricardo","first_name":"Ricardo","last_name":"Tejos"},{"first_name":"Michael","last_name":"Sauer","full_name":"Sauer, Michael"},{"full_name":"Vanneste, Steffen","first_name":"Steffen","last_name":"Vanneste"},{"full_name":"Palacios-Gomez, MiriamPalacios ","first_name":"MiriamPalacios ","last_name":"Palacios-Gomez"},{"id":"33CA54A6-F248-11E8-B48F-1D18A9856A87","full_name":"Li, Hongjiang","orcid":"0000-0001-5039-9660","last_name":"Li","first_name":"Hongjiang"},{"first_name":"Mareike","last_name":"Heilmann","full_name":"Heilmann, Mareike"},{"first_name":"Ringo","last_name":"Van Wijk","full_name":"Van Wijk, Ringo"},{"first_name":"Joop","last_name":"Vermeer","full_name":"Vermeer, Joop"},{"full_name":"Heilmann, Ingo","first_name":"Ingo","last_name":"Heilmann"},{"first_name":"Teun","last_name":"Munnik","full_name":"Munnik, Teun"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jirí","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jirí"}],"date_published":"2014-05-01T00:00:00Z","corr_author":"1","isi":1,"intvolume":"        26","publisher":"American Society of Plant Biologists","date_updated":"2025-09-29T12:17:33Z","status":"public","publication_status":"published","day":"01","year":"2014","title":"Bipolar plasma membrane distribution of phosphoinositides and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis","abstract":[{"text":"Cell polarity manifested by asymmetric distribution of cargoes, such as receptors and transporters, within the plasma membrane (PM) is crucial for essential functions in multicellular organisms. In plants, cell polarity (re)establishment is intimately linked to patterning processes. Despite the importance of cell polarity, its underlying mechanisms are still largely unknown, including the definition and distinctiveness of the polar domains within the PM. Here, we show in Arabidopsis thaliana that the signaling membrane components, the phosphoinositides phosphatidylinositol 4-phosphate (PtdIns4P) and phosphatidylinositol 4, 5-bisphosphate [PtdIns(4, 5)P2] as well as PtdIns4P 5-kinases mediating their interconversion, are specifically enriched at apical and basal polar plasma membrane domains. The PtdIns4P 5-kinases PIP5K1 and PIP5K2 are redundantly required for polar localization of specifically apical and basal cargoes, such as PIN-FORMED transporters for the plant hormone auxin. As a consequence of the polarity defects, instructive auxin gradients as well as embryonic and postembryonic patterning are severely compromised. Furthermore, auxin itself regulates PIP5K transcription and PtdIns4P and PtdIns(4, 5)P2 levels, in particular their association with polar PM domains. Our results provide insight into the polar domain-delineating mechanisms in plant cells that depend on apical and basal distribution of membrane lipids and are essential for embryonic and postembryonic patterning.","lang":"eng"}],"publication":"Plant Cell","ec_funded":1,"volume":26,"project":[{"name":"Polarity and subcellular dynamics in plants","call_identifier":"FP7","grant_number":"282300","_id":"25716A02-B435-11E9-9278-68D0E5697425"}],"page":"2114 - 2128","article_processing_charge":"No","external_id":{"isi":["000338771700027"]},"scopus_import":"1","citation":{"apa":"Tejos, R., Sauer, M., Vanneste, S., Palacios-Gomez, M., Li, H., Heilmann, M., … Friml, J. (2014). Bipolar plasma membrane distribution of phosphoinositides and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis. <i>Plant Cell</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1105/tpc.114.126185\">https://doi.org/10.1105/tpc.114.126185</a>","ista":"Tejos R, Sauer M, Vanneste S, Palacios-Gomez M, Li H, Heilmann M, Van Wijk R, Vermeer J, Heilmann I, Munnik T, Friml J. 2014. Bipolar plasma membrane distribution of phosphoinositides and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis. Plant Cell. 26(5), 2114–2128.","ama":"Tejos R, Sauer M, Vanneste S, et al. Bipolar plasma membrane distribution of phosphoinositides and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis. <i>Plant Cell</i>. 2014;26(5):2114-2128. doi:<a href=\"https://doi.org/10.1105/tpc.114.126185\">10.1105/tpc.114.126185</a>","chicago":"Tejos, Ricardo, Michael Sauer, Steffen Vanneste, MiriamPalacios  Palacios-Gomez, Hongjiang Li, Mareike Heilmann, Ringo Van Wijk, et al. “Bipolar Plasma Membrane Distribution of Phosphoinositides and Their Requirement for Auxin-Mediated Cell Polarity and Patterning in Arabidopsis.” <i>Plant Cell</i>. American Society of Plant Biologists, 2014. <a href=\"https://doi.org/10.1105/tpc.114.126185\">https://doi.org/10.1105/tpc.114.126185</a>.","short":"R. Tejos, M. Sauer, S. Vanneste, M. Palacios-Gomez, H. Li, M. Heilmann, R. Van Wijk, J. Vermeer, I. Heilmann, T. Munnik, J. Friml, Plant Cell 26 (2014) 2114–2128.","mla":"Tejos, Ricardo, et al. “Bipolar Plasma Membrane Distribution of Phosphoinositides and Their Requirement for Auxin-Mediated Cell Polarity and Patterning in Arabidopsis.” <i>Plant Cell</i>, vol. 26, no. 5, American Society of Plant Biologists, 2014, pp. 2114–28, doi:<a href=\"https://doi.org/10.1105/tpc.114.126185\">10.1105/tpc.114.126185</a>.","ieee":"R. Tejos <i>et al.</i>, “Bipolar plasma membrane distribution of phosphoinositides and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis,” <i>Plant Cell</i>, vol. 26, no. 5. American Society of Plant Biologists, pp. 2114–2128, 2014."},"month":"05","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","doi":"10.1105/tpc.114.126185","date_created":"2018-12-11T11:54:43Z","_id":"1921","acknowledgement":"This work was supported by grants from the Odysseus program of the Research Foundation-Flanders (to J.F.).","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079372/","open_access":"1"}],"department":[{"_id":"JiFr"}],"oa":1,"oa_version":"Submitted Version","issue":"5","language":[{"iso":"eng"}]},{"publication":"New Phytologist","abstract":[{"text":"Germination of Arabidopsis seeds in darkness induces apical hook development, based on a tightly regulated differential growth coordinated by a multiple hormone cross-talk. Here, we endeavoured to clarify the function of brassinosteroids (BRs) and cross-talk with ethylene in hook development. An automated infrared imaging system was developed to study the kinetics of hook development in etiolated Arabidopsis seedlings. To ascertain the photomorphogenic control of hook opening, the system was equipped with an automatic light dimmer. We demonstrate that ethylene and BRs are indispensable for hook formation and maintenance. Ethylene regulation of hook formation functions partly through BRs, with BR feedback inhibition of ethylene action. Conversely, BR-mediated extension of hook maintenance functions partly through ethylene. Furthermore, we revealed that a short light pulse is sufficient to induce rapid hook opening. Our dynamic infrared imaging system allows high-resolution, kinetic imaging of up to 112 seedlings in a single experimental run. At this high throughput, it is ideally suited to rapidly gain insight in pathway networks. We demonstrate that BRs and ethylene cooperatively regulate apical hook development in a phase-dependent manner. Furthermore, we show that light is a predominant regulator of hook opening, inhibiting ethylene- and BR-mediated postponement of hook opening.","lang":"eng"}],"volume":202,"ec_funded":1,"title":"Dynamic infrared imaging analysis of apical hook development in Arabidopsis: The case of brassinosteroids","project":[{"name":"Hormonal cross-talk in plant organogenesis","call_identifier":"FP7","_id":"253FCA6A-B435-11E9-9278-68D0E5697425","grant_number":"207362"}],"external_id":{"isi":["000335470200029"]},"page":"1398 - 1411","article_processing_charge":"No","doi":"10.1111/nph.12751","date_created":"2018-12-11T11:54:44Z","_id":"1922","acknowledgement":"Funded by Ghent University; Research Foundation Flanders Grant Number: G065613N European Research Council Grant Number: CZ.1.07/2.3.00/20.0043","scopus_import":"1","citation":{"mla":"Smet, Dajo, et al. “Dynamic Infrared Imaging Analysis of Apical Hook Development in Arabidopsis: The Case of Brassinosteroids.” <i>New Phytologist</i>, vol. 202, no. 4, Wiley-Blackwell, 2014, pp. 1398–411, doi:<a href=\"https://doi.org/10.1111/nph.12751\">10.1111/nph.12751</a>.","ieee":"D. Smet, P. Žádníková, F. Vandenbussche, E. Benková, and D. Van Der Straeten, “Dynamic infrared imaging analysis of apical hook development in Arabidopsis: The case of brassinosteroids,” <i>New Phytologist</i>, vol. 202, no. 4. Wiley-Blackwell, pp. 1398–1411, 2014.","short":"D. Smet, P. Žádníková, F. Vandenbussche, E. Benková, D. Van Der Straeten, New Phytologist 202 (2014) 1398–1411.","chicago":"Smet, Dajo, Petra Žádníková, Filip Vandenbussche, Eva Benková, and Dominique Van Der Straeten. “Dynamic Infrared Imaging Analysis of Apical Hook Development in Arabidopsis: The Case of Brassinosteroids.” <i>New Phytologist</i>. Wiley-Blackwell, 2014. <a href=\"https://doi.org/10.1111/nph.12751\">https://doi.org/10.1111/nph.12751</a>.","ama":"Smet D, Žádníková P, Vandenbussche F, Benková E, Van Der Straeten D. Dynamic infrared imaging analysis of apical hook development in Arabidopsis: The case of brassinosteroids. <i>New Phytologist</i>. 2014;202(4):1398-1411. doi:<a href=\"https://doi.org/10.1111/nph.12751\">10.1111/nph.12751</a>","ista":"Smet D, Žádníková P, Vandenbussche F, Benková E, Van Der Straeten D. 2014. Dynamic infrared imaging analysis of apical hook development in Arabidopsis: The case of brassinosteroids. New Phytologist. 202(4), 1398–1411.","apa":"Smet, D., Žádníková, P., Vandenbussche, F., Benková, E., &#38; Van Der Straeten, D. (2014). Dynamic infrared imaging analysis of apical hook development in Arabidopsis: The case of brassinosteroids. <i>New Phytologist</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/nph.12751\">https://doi.org/10.1111/nph.12751</a>"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"06","type":"journal_article","issue":"4","language":[{"iso":"eng"}],"department":[{"_id":"EvBe"}],"oa_version":"None","date_published":"2014-06-01T00:00:00Z","publist_id":"5172","author":[{"full_name":"Smet, Dajo","last_name":"Smet","first_name":"Dajo"},{"first_name":"Petra","last_name":"Žádníková","full_name":"Žádníková, Petra"},{"last_name":"Vandenbussche","first_name":"Filip","full_name":"Vandenbussche, Filip"},{"full_name":"Benková, Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8510-9739","first_name":"Eva","last_name":"Benková"},{"full_name":"Van Der Straeten, Dominique","last_name":"Van Der Straeten","first_name":"Dominique"}],"isi":1,"intvolume":"       202","status":"public","publication_status":"published","publisher":"Wiley-Blackwell","date_updated":"2025-09-29T12:17:00Z","day":"01","year":"2014"},{"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"isi":1,"intvolume":"        16","publist_id":"5171","author":[{"full_name":"Berthoumieux, Hélène","first_name":"Hélène","last_name":"Berthoumieux"},{"last_name":"Maître","first_name":"Jean-Léon","orcid":"0000-0002-3688-1474","id":"48F1E0D8-F248-11E8-B48F-1D18A9856A87","full_name":"Maître, Jean-Léon"},{"id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J","orcid":"0000-0002-0912-4566","last_name":"Heisenberg","first_name":"Carl-Philipp J"},{"full_name":"Paluch, Ewa","first_name":"Ewa","last_name":"Paluch"},{"full_name":"Julicher, Frank","first_name":"Frank","last_name":"Julicher"},{"last_name":"Salbreux","first_name":"Guillaume","full_name":"Salbreux, Guillaume"}],"ddc":["570"],"date_published":"2014-06-01T00:00:00Z","file":[{"file_name":"IST-2016-429-v1+1_document.pdf","file_id":"5202","relation":"main_file","date_created":"2018-12-12T10:16:16Z","checksum":"8dbe81ec656bf1264d8889bda9b2b985","access_level":"open_access","creator":"system","date_updated":"2020-07-14T12:45:21Z","content_type":"application/pdf","file_size":941387}],"day":"01","year":"2014","publisher":"IOP Publishing","date_updated":"2025-09-29T12:16:30Z","status":"public","pubrep_id":"429","publication_status":"published","external_id":{"isi":["000339083700003"]},"article_processing_charge":"No","article_number":"065005","title":"Active elastic thin shell theory for cellular deformations","file_date_updated":"2020-07-14T12:45:21Z","publication":"New Journal of Physics","abstract":[{"lang":"eng","text":"We derive the equations for a thin, axisymmetric elastic shell subjected to an internal active stress giving rise to active tension and moments within the shell. We discuss the stability of a cylindrical elastic shell and its response to a localized change in internal active stress. This description is relevant to describe the cellular actomyosin cortex, a thin shell at the cell surface behaving elastically at a short timescale and subjected to active internal forces arising from myosin molecular motor activity. We show that the recent observations of cell deformation following detachment of adherent cells (Maître J-L et al 2012 Science 338 253-6) are well accounted for by this mechanical description. The actin cortex elastic and bending moduli can be obtained from a quantitative analysis of cell shapes observed in these experiments. Our approach thus provides a non-invasive, imaging-based method for the extraction of cellular physical parameters."}],"volume":16,"department":[{"_id":"CaHe"}],"oa_version":"Published Version","oa":1,"language":[{"iso":"eng"}],"quality_controlled":"1","scopus_import":"1","citation":{"ieee":"H. Berthoumieux, J.-L. Maître, C.-P. J. Heisenberg, E. Paluch, F. Julicher, and G. Salbreux, “Active elastic thin shell theory for cellular deformations,” <i>New Journal of Physics</i>, vol. 16. IOP Publishing, 2014.","mla":"Berthoumieux, Hélène, et al. “Active Elastic Thin Shell Theory for Cellular Deformations.” <i>New Journal of Physics</i>, vol. 16, 065005, IOP Publishing, 2014, doi:<a href=\"https://doi.org/10.1088/1367-2630/16/6/065005\">10.1088/1367-2630/16/6/065005</a>.","short":"H. Berthoumieux, J.-L. Maître, C.-P.J. Heisenberg, E. Paluch, F. Julicher, G. Salbreux, New Journal of Physics 16 (2014).","chicago":"Berthoumieux, Hélène, Jean-Léon Maître, Carl-Philipp J Heisenberg, Ewa Paluch, Frank Julicher, and Guillaume Salbreux. “Active Elastic Thin Shell Theory for Cellular Deformations.” <i>New Journal of Physics</i>. IOP Publishing, 2014. <a href=\"https://doi.org/10.1088/1367-2630/16/6/065005\">https://doi.org/10.1088/1367-2630/16/6/065005</a>.","ama":"Berthoumieux H, Maître J-L, Heisenberg C-PJ, Paluch E, Julicher F, Salbreux G. Active elastic thin shell theory for cellular deformations. <i>New Journal of Physics</i>. 2014;16. doi:<a href=\"https://doi.org/10.1088/1367-2630/16/6/065005\">10.1088/1367-2630/16/6/065005</a>","ista":"Berthoumieux H, Maître J-L, Heisenberg C-PJ, Paluch E, Julicher F, Salbreux G. 2014. Active elastic thin shell theory for cellular deformations. New Journal of Physics. 16, 065005.","apa":"Berthoumieux, H., Maître, J.-L., Heisenberg, C.-P. J., Paluch, E., Julicher, F., &#38; Salbreux, G. (2014). Active elastic thin shell theory for cellular deformations. <i>New Journal of Physics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1367-2630/16/6/065005\">https://doi.org/10.1088/1367-2630/16/6/065005</a>"},"month":"06","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","date_created":"2018-12-11T11:54:44Z","doi":"10.1088/1367-2630/16/6/065005","_id":"1923"}]