[{"article_number":"2450028","author":[{"last_name":"Campbell","full_name":"Campbell, Andrew J","id":"582b06a9-1f1c-11ee-b076-82ffce00dde4","first_name":"Andrew J"},{"last_name":"Luh","full_name":"Luh, Kyle","first_name":"Kyle"},{"last_name":"Margarint","first_name":"Vlad","full_name":"Margarint, Vlad"}],"scopus_import":"1","publication_identifier":{"issn":["2010-3263"],"eissn":["2010-3271"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2301.04722","open_access":"1"}],"day":"01","article_processing_charge":"No","type":"journal_article","fulldoi":"https://doi.org/10.1142/S201032632450028X","arxiv":1,"external_id":{"isi":["001397136000001"],"arxiv":["2301.04722"]},"date_published":"2025-01-01T00:00:00Z","language":[{"iso":"eng"}],"year":"2025","volume":14,"OA_place":"repository","publication_status":"published","citation":{"ieee":"A. J. Campbell, K. Luh, and V. Margarint, “Rate of convergence in multiple SLE using random matrix theory,” <i>Random Matrices: Theory and Application</i>, vol. 14, no. 1. World Scientific Publishing, 2025.","short":"A.J. Campbell, K. Luh, V. Margarint, Random Matrices: Theory and Application 14 (2025).","apa":"Campbell, A. J., Luh, K., &#38; Margarint, V. (2025). Rate of convergence in multiple SLE using random matrix theory. <i>Random Matrices: Theory and Application</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S201032632450028X\">https://doi.org/10.1142/S201032632450028X</a>","chicago":"Campbell, Andrew J, Kyle Luh, and Vlad Margarint. “Rate of Convergence in Multiple SLE Using Random Matrix Theory.” <i>Random Matrices: Theory and Application</i>. World Scientific Publishing, 2025. <a href=\"https://doi.org/10.1142/S201032632450028X\">https://doi.org/10.1142/S201032632450028X</a>.","mla":"Campbell, Andrew J., et al. “Rate of Convergence in Multiple SLE Using Random Matrix Theory.” <i>Random Matrices: Theory and Application</i>, vol. 14, no. 1, 2450028, World Scientific Publishing, 2025, doi:<a href=\"https://doi.org/10.1142/S201032632450028X\">10.1142/S201032632450028X</a>.","ama":"Campbell AJ, Luh K, Margarint V. Rate of convergence in multiple SLE using random matrix theory. <i>Random Matrices: Theory and Application</i>. 2025;14(1). doi:<a href=\"https://doi.org/10.1142/S201032632450028X\">10.1142/S201032632450028X</a>","ista":"Campbell AJ, Luh K, Margarint V. 2025. Rate of convergence in multiple SLE using random matrix theory. Random Matrices: Theory and Application. 14(1), 2450028."},"OA_type":"green","doi":"10.1142/S201032632450028X","publisher":"World Scientific Publishing","status":"public","issue":"1","quality_controlled":"1","abstract":[{"lang":"eng","text":"In this paper, we provide a rate of convergence for a version of the Carathéodory convergence for the multiple SLE model with a Dyson Brownian motion driver towards its hydrodynamic limit, for β=1 and β=2. The results are obtained by combining techniques from the field of Schramm–Loewner Evolutions with modern techniques from random matrices. Our approach shows how one can apply modern tools used in the proof of universality in random matrix theory to the field of Schramm–Loewner Evolutions."}],"title":"Rate of convergence in multiple SLE using random matrix theory","article_type":"original","department":[{"_id":"LaEr"}],"date_created":"2025-01-26T23:01:49Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","_id":"18880","intvolume":"        14","publication":"Random Matrices: Theory and Application","oa_version":"Preprint","oa":1,"isi":1,"date_updated":"2025-07-10T11:51:29Z"},{"day":"01","article_processing_charge":"Yes (via OA deal)","type":"journal_article","article_number":"e202400743","author":[{"first_name":"Nomnotho","full_name":"Jiyane, Nomnotho","last_name":"Jiyane"},{"full_name":"Santana Santos, Carla","first_name":"Carla","last_name":"Santana Santos"},{"full_name":"Echevarria Poza, Igor","first_name":"Igor","id":"fbae1d3b-8142-11ed-8927-a8cf34feb495","last_name":"Echevarria Poza"},{"id":"452e82c6-803f-11ed-ab7e-ca0439e73a5d","first_name":"Mario","full_name":"Palacios Corella, Mario","last_name":"Palacios Corella"},{"full_name":"Abdillah Mahbub, Muhammad Adib","first_name":"Muhammad Adib","last_name":"Abdillah Mahbub"},{"last_name":"Marin-Tajadura","first_name":"Gimena","full_name":"Marin-Tajadura, Gimena"},{"last_name":"Quast","full_name":"Quast, Thomas","first_name":"Thomas"},{"last_name":"Ibáñez","orcid":"0000-0001-5013-2843","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria"},{"full_name":"Ventosa, Edgar","first_name":"Edgar","last_name":"Ventosa"},{"last_name":"Schuhmann","full_name":"Schuhmann, Wolfgang","first_name":"Wolfgang"}],"publication_identifier":{"eissn":["2566-6223"]},"scopus_import":"1","external_id":{"isi":["001402369200001"]},"date_published":"2025-03-01T00:00:00Z","language":[{"iso":"eng"}],"ddc":["540"],"fulldoi":"https://doi.org/10.1002/batt.202400743","has_accepted_license":"1","issue":"3","status":"public","publisher":"Wiley","quality_controlled":"1","license":"https://creativecommons.org/licenses/by-nc/4.0/","abstract":[{"text":"The determination of the intrinsic properties of solid active material candidates is essential for their performance optimization. However, macroscopic electrodes and related analytical techniques show challenges concerning the number of additional influencing parameters. We explore recessed microelectrodes (rME) as a platform that allows for a binder-free investigation of Prussian Blue analogues (PBA), a family of promising battery materials. The enhanced diffusion using microelectrochemical tools is indispensable to assess the intrinsic material performance, overcoming the limitation of cation diffusion from the electrolyte to the solid interface during (dis)charging cycles and allowing the investigation of limiting steps in the coupled ion-electron transfer process. The intrinsic electrochemical performance of PBAs was studied in a three-electrode configuration by means of cyclic voltammetry and galvanostatic (dis)charging in aqueous Na+-containing electrolyte. We extended the evaluation to the role of the electrolyte on the performance of cathodic and anodic processes of a Mn-based PBA. Ex-situ and operando chemical characterization were coupled to support the microelectrochemical results.","lang":"eng"}],"title":"Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application","acknowledgement":"The authors acknowledge funding from the European Union's Horizon Europe research and innovation programme – European Innovation Council (EIC) under the grant agreement 101046742 (MeBattery), the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (CasCat [833408]), and the Spanish Government (Ministerio de Ciencia e Innovación, Grants PID2021-124974OB-C22). The authors thank Martin Trautmann (RUB) and Prof. Dr. Daniel Grasseschi (Federal University of Rio de Janeiro – UFRJ) for support concerning ICP-MS and Raman measurements, respectively. Open Access funding enabled and organized by Projekt DEAL.","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"volume":8,"year":"2025","citation":{"ista":"Jiyane N, Santana Santos C, Echevarria Poza I, Palacios Corella M, Abdillah Mahbub MA, Marin-Tajadura G, Quast T, Ibáñez M, Ventosa E, Schuhmann W. 2025. Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. Batteries &#38; Supercaps. 8(3), e202400743.","ama":"Jiyane N, Santana Santos C, Echevarria Poza I, et al. Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. <i>Batteries &#38; Supercaps</i>. 2025;8(3). doi:<a href=\"https://doi.org/10.1002/batt.202400743\">10.1002/batt.202400743</a>","mla":"Jiyane, Nomnotho, et al. “Recessed Microelectrodes as a Platform to Investigate the Intrinsic Redox Process of Prussian Blue Analogs for Energy Storage Application.” <i>Batteries &#38; Supercaps</i>, vol. 8, no. 3, e202400743, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/batt.202400743\">10.1002/batt.202400743</a>.","chicago":"Jiyane, Nomnotho, Carla Santana Santos, Igor Echevarria Poza, Mario Palacios Corella, Muhammad Adib Abdillah Mahbub, Gimena Marin-Tajadura, Thomas Quast, Maria Ibáñez, Edgar Ventosa, and Wolfgang Schuhmann. “Recessed Microelectrodes as a Platform to Investigate the Intrinsic Redox Process of Prussian Blue Analogs for Energy Storage Application.” <i>Batteries &#38; Supercaps</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/batt.202400743\">https://doi.org/10.1002/batt.202400743</a>.","apa":"Jiyane, N., Santana Santos, C., Echevarria Poza, I., Palacios Corella, M., Abdillah Mahbub, M. A., Marin-Tajadura, G., … Schuhmann, W. (2025). Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. <i>Batteries &#38; Supercaps</i>. Wiley. <a href=\"https://doi.org/10.1002/batt.202400743\">https://doi.org/10.1002/batt.202400743</a>","short":"N. Jiyane, C. Santana Santos, I. Echevarria Poza, M. Palacios Corella, M.A. Abdillah Mahbub, G. Marin-Tajadura, T. Quast, M. Ibáñez, E. Ventosa, W. Schuhmann, Batteries &#38; Supercaps 8 (2025).","ieee":"N. Jiyane <i>et al.</i>, “Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application,” <i>Batteries &#38; Supercaps</i>, vol. 8, no. 3. Wiley, 2025."},"OA_place":"publisher","publication_status":"published","OA_type":"hybrid","doi":"10.1002/batt.202400743","file_date_updated":"2025-04-16T06:47:09Z","intvolume":"         8","publication":"Batteries & Supercaps","oa_version":"Published Version","file":[{"date_created":"2025-04-16T06:47:09Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"a9ebdb25c43dc2823cc8a1ba9154d914","file_size":1251786,"file_name":"2025_Batteries_Jiyane.pdf","creator":"dernst","success":1,"file_id":"19568","date_updated":"2025-04-16T06:47:09Z"}],"date_updated":"2026-02-16T12:15:59Z","isi":1,"oa":1,"department":[{"_id":"MaIb"}],"article_type":"original","date_created":"2025-01-26T23:01:50Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"03","_id":"18881"},{"external_id":{"isi":["001398067000001"]},"date_published":"2025-06-19T00:00:00Z","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1002/adfm.202421449","day":"19","type":"journal_article","article_processing_charge":"No","article_number":"2421449","scopus_import":"1","publication_identifier":{"eissn":["1616-3028"],"issn":["1616-301X"]},"author":[{"full_name":"Zhao, Xueke","first_name":"Xueke","last_name":"Zhao"},{"full_name":"Li, Mengyao","first_name":"Mengyao","last_name":"Li"},{"full_name":"Jia, Mochen","first_name":"Mochen","last_name":"Jia"},{"full_name":"Fiedler, Christine","id":"bd3fceba-dc74-11ea-a0a7-c17f71817366","first_name":"Christine","last_name":"Fiedler"},{"last_name":"Nan","first_name":"Bingfei","full_name":"Nan, Bingfei"},{"last_name":"Yang","full_name":"Yang, Dongwen","first_name":"Dongwen"},{"last_name":"Li","full_name":"Li, Lei","first_name":"Lei"},{"last_name":"Yuan","full_name":"Yuan, Zicheng","first_name":"Zicheng"},{"last_name":"Song","full_name":"Song, Hongzhang","first_name":"Hongzhang"},{"last_name":"Liu","orcid":"0000-0001-7313-6740","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","first_name":"Yu","full_name":"Liu, Yu"},{"first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez"},{"first_name":"Ziyu","full_name":"Wang, Ziyu","last_name":"Wang"},{"last_name":"Shan","first_name":"Chongxin","full_name":"Shan, Chongxin"},{"first_name":"Andreu","full_name":"Cabot, Andreu","last_name":"Cabot"}],"publication":"Advanced Functional Materials","oa_version":"None","intvolume":"        35","isi":1,"date_updated":"2025-12-30T07:17:39Z","date_created":"2025-01-26T23:01:50Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","department":[{"_id":"MaIb"},{"_id":"GradSch"}],"_id":"18882","month":"06","quality_controlled":"1","publisher":"Wiley","status":"public","issue":"24","acknowledgement":"X.Z. and M.L. contributed equally to this work. This work was supported by the National Key R&D Program of China (No. 2024YFE0105200). Also supported by the China Postdoctoral Science Foundation under Grant Number 2023M743151. M.J. acknowledges funding from the China Postdoctoral Science Foundation (No. 2023M743221). A.C. thanks the support from the projects ENE2016-77798-C4-3-R and NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/ and by “ERDF A way of making Europe”, by the “European Union”.","abstract":[{"lang":"eng","text":"Ternary liquid-like thermoelectric materials have garnered significant attention due to their ultra-low lattice thermal conductivity. Among these, Ag8SnSe6 stands out for its exceptionally low sound velocity and thermal conductivity. However, the inherent poor electrical conductivity and suboptimal thermoelectric properties of Ag8SnSe6 necessitate further improvement. Here, a novel approach is initiated to enhance the thermoelectric properties of Ag8SnSe6 by combining low-dimensionalization with intrinsic doping. For the first time, this work successfully synthesizes single-phase Ag8SnSe6 nanocrystals, ≈10 nm in size, with the correct phase and composition using a robust and reliable colloidal method. This approach represents a significant improvement over previous reports on this material. Reducing the crystal domains of Ag8SnSe6 to the nanoscale induces quantum confinement effects, increasing the density of states near the Fermi surface. It also introduces additional grain boundaries, which lower the lattice thermal conductivity and simplify structural design. Moreover, incorporating small amounts of Sn nanopowder into the Ag8SnSe6 nanocrystals before consolidation further enhances the thermoelectric performance. Sn acts as a donor dopant, increasing the electronic concentration while at the same time improving their mobility by reducing interface barriers, thus significantly improving the material transport properties. Additionally, the presence of Sn leads to the formation of point defects, dislocations, and secondary phases, which increase phonon scattering and further reduce the thermal conductivity. Through this synergistic optimization, the figure of merit  shows a significant increase across a wide temperature range. Overall, a strategy is presented for the controlled preparation of Ag8SnSe6 nanocrystals, the decoupling of their electrical and thermal transport, and the practical application of this material to thermoelectric single-leg modules."}],"title":"Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance","citation":{"apa":"Zhao, X., Li, M., Jia, M., Fiedler, C., Nan, B., Yang, D., … Cabot, A. (2025). Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. <i>Advanced Functional Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adfm.202421449\">https://doi.org/10.1002/adfm.202421449</a>","chicago":"Zhao, Xueke, Mengyao Li, Mochen Jia, Christine Fiedler, Bingfei Nan, Dongwen Yang, Lei Li, et al. “Low-Dimensional Structure Modulation in Ag8SnSe6 for Enhanced Thermoelectric Performance.” <i>Advanced Functional Materials</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/adfm.202421449\">https://doi.org/10.1002/adfm.202421449</a>.","ieee":"X. Zhao <i>et al.</i>, “Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance,” <i>Advanced Functional Materials</i>, vol. 35, no. 24. Wiley, 2025.","short":"X. Zhao, M. Li, M. Jia, C. Fiedler, B. Nan, D. Yang, L. Li, Z. Yuan, H. Song, Y. Liu, M. Ibáñez, Z. Wang, C. Shan, A. Cabot, Advanced Functional Materials 35 (2025).","ista":"Zhao X, Li M, Jia M, Fiedler C, Nan B, Yang D, Li L, Yuan Z, Song H, Liu Y, Ibáñez M, Wang Z, Shan C, Cabot A. 2025. Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. Advanced Functional Materials. 35(24), 2421449.","mla":"Zhao, Xueke, et al. “Low-Dimensional Structure Modulation in Ag8SnSe6 for Enhanced Thermoelectric Performance.” <i>Advanced Functional Materials</i>, vol. 35, no. 24, 2421449, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/adfm.202421449\">10.1002/adfm.202421449</a>.","ama":"Zhao X, Li M, Jia M, et al. Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. <i>Advanced Functional Materials</i>. 2025;35(24). doi:<a href=\"https://doi.org/10.1002/adfm.202421449\">10.1002/adfm.202421449</a>"},"publication_status":"published","year":"2025","volume":35,"doi":"10.1002/adfm.202421449","OA_type":"closed access"},{"page":"285-292","publication_identifier":{"eissn":["1365-2966"],"issn":["0035-8711"]},"scopus_import":"1","author":[{"last_name":"Xing","first_name":"Zepei","full_name":"Xing, Zepei"},{"first_name":"Santiago","id":"a8df4360-4328-11ee-8f1a-e502d0c83fc2","full_name":"Torres Rodriguez, Santiago","orcid":"0000-0002-3150-8988","last_name":"Torres Rodriguez"},{"orcid":"0000-0002-6960-6911","last_name":"Götberg","full_name":"Götberg, Ylva Louise Linsdotter","first_name":"Ylva Louise Linsdotter","id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d"},{"last_name":"Trani","first_name":"Alessandro A.","full_name":"Trani, Alessandro A."},{"last_name":"Korol","full_name":"Korol, Valeriya","first_name":"Valeriya"},{"first_name":"Jorge","full_name":"Cuadra, Jorge","last_name":"Cuadra"}],"day":"01","type":"journal_article","article_processing_charge":"Yes","PlanS_conform":"1","has_accepted_license":"1","fulldoi":"https://doi.org/10.1093/mnras/stae2820","ddc":["520"],"date_published":"2025-02-01T00:00:00Z","external_id":{"isi":["001400731500001"],"arxiv":["2410.19695"]},"arxiv":1,"language":[{"iso":"eng"}],"citation":{"apa":"Xing, Z., Torres Rodriguez, S., Götberg, Y. L. L., Trani, A. A., Korol, V., &#38; Cuadra, J. (2025). Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/stae2820\">https://doi.org/10.1093/mnras/stae2820</a>","chicago":"Xing, Zepei, Santiago Torres Rodriguez, Ylva Louise Linsdotter Götberg, Alessandro A. Trani, Valeriya Korol, and Jorge Cuadra. “Combining REBOUND and MESA: Dynamical Evolution of Planets Orbiting Interacting Binaries.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/mnras/stae2820\">https://doi.org/10.1093/mnras/stae2820</a>.","ieee":"Z. Xing, S. Torres Rodriguez, Y. L. L. Götberg, A. A. Trani, V. Korol, and J. Cuadra, “Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 537, no. 1. Oxford University Press, pp. 285–292, 2025.","short":"Z. Xing, S. Torres Rodriguez, Y.L.L. Götberg, A.A. Trani, V. Korol, J. Cuadra, Monthly Notices of the Royal Astronomical Society 537 (2025) 285–292.","ista":"Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. 2025. Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. Monthly Notices of the Royal Astronomical Society. 537(1), 285–292.","mla":"Xing, Zepei, et al. “Combining REBOUND and MESA: Dynamical Evolution of Planets Orbiting Interacting Binaries.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 537, no. 1, Oxford University Press, 2025, pp. 285–92, doi:<a href=\"https://doi.org/10.1093/mnras/stae2820\">10.1093/mnras/stae2820</a>.","ama":"Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. <i>Monthly Notices of the Royal Astronomical Society</i>. 2025;537(1):285-292. doi:<a href=\"https://doi.org/10.1093/mnras/stae2820\">10.1093/mnras/stae2820</a>"},"OA_place":"publisher","publication_status":"published","volume":537,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2025","doi":"10.1093/mnras/stae2820","OA_type":"gold","quality_controlled":"1","publisher":"Oxford University Press","project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","call_identifier":"H2020"}],"status":"public","issue":"1","acknowledgement":"We thank the participants of the 2023 Kavli Summer Program in Astrophysics, hosted by the Max Planck Institute for Astrophysics and funded by the Kavli Foundation. In particular, Holly Preece, Selma de Mink, and Stephen Justham for their feedback and comments on our work. ZX acknowledges support from the China Scholarship Council (CSC). ST acknowledges the funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413. AAT acknowledges support from the Horizon Europe research and innovation programmes under the Marie Skłodowska-Curie grant agreement no. 101103134.","title":"Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries","abstract":[{"lang":"eng","text":"Although planets have been found orbiting binary systems, whether they can survive binary interactions is debated. While the tightest-orbit binaries should host the most dynamically stable and long-lived circumbinary planetary systems, they are also the systems that are expected to experience mass transfer, common envelope evolution, or stellar mergers. In this study, we explore the effect of stable non-conservative mass transfer on the dynamical evolution of circumbinary planets. We present a new script that seamlessly integrates binary evolution data from the 1D binary stellar evolution code MESA into the N-body simulation code REBOUND. This integration framework enables a comprehensive examination of the dynamical evolution of circumbinary planets orbiting mass-transferring binaries, while simultaneously accounting for the detailed stellar structure evolution. In addition, we introduce a recalibration method to mitigate numerical errors from updates of binary properties during the system's dynamical evolution. We construct a reference binary model in which a 2.21M⊙ star loses its hydrogen-rich envelope through non-conservative mass transfer to the 1.76M⊙ companion star, creating a 0.38M⊙ subdwarf. We find the tightest stable orbital separation for circumbinary planets to be ≃2.5 times the binary separation after mass transfer. Accounting for tides by using the interior stellar structure, we find that tidal effects become apparent after the rapid mass transfer phase and start to fade away during the latter stage of the slow mass transfer phase. Our research provides a new framework for exploring circumbinary planet dynamics in interacting binary systems."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2025-02-02T23:01:53Z","article_type":"original","department":[{"_id":"YlGo"},{"_id":"LiBu"}],"DOAJ_listed":"1","ec_funded":1,"_id":"18984","month":"02","oa_version":"Published Version","publication":"Monthly Notices of the Royal Astronomical Society","intvolume":"       537","file_date_updated":"2025-12-30T07:24:34Z","oa":1,"file":[{"file_name":"2025_MonthlyNoticesRAS_Xing.pdf","creator":"dernst","success":1,"date_updated":"2025-12-30T07:24:34Z","file_id":"20881","date_created":"2025-12-30T07:24:34Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"49fb4fe69f487d36169ccea60acbeccc","file_size":2974244}],"date_updated":"2025-12-30T07:25:37Z","isi":1},{"day":"17","article_processing_charge":"No","type":"journal_article","page":"278-284","author":[{"last_name":"Chen","full_name":"Chen, Liangzhi","first_name":"Liangzhi"},{"full_name":"Brun, Philipp","first_name":"Philipp","last_name":"Brun"},{"last_name":"Buri","id":"317987aa-9421-11ee-ac5a-b941b041abba","first_name":"Pascal","full_name":"Buri, Pascal"},{"first_name":"Simone","full_name":"Fatichi, Simone","last_name":"Fatichi"},{"full_name":"Gessler, Arthur","first_name":"Arthur","last_name":"Gessler"},{"last_name":"Mccarthy","full_name":"Mccarthy, Michael","id":"22a2674a-61ce-11ee-94b5-d18813baf16f","first_name":"Michael"},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","last_name":"Pellicciotti","orcid":"0000-0002-5554-8087"},{"full_name":"Stocker, Benjamin","first_name":"Benjamin","last_name":"Stocker"},{"first_name":"Dirk Nikolaus","full_name":"Karger, Dirk Nikolaus","last_name":"Karger"}],"scopus_import":"1","publication_identifier":{"eissn":["1095-9203"]},"pmid":1,"external_id":{"isi":["001491931700027"],"pmid":["39818908"]},"date_published":"2025-01-17T00:00:00Z","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1126/science.ado4245","publisher":"AAAS","status":"public","issue":"6731","quality_controlled":"1","title":"Global increase in the occurrence and impact of multiyear droughts","abstract":[{"text":"Persistent multiyear drought (MYD) events pose a growing threat to nature and humans in a changing climate. We identified and inventoried global MYDs by detecting spatiotemporally contiguous climatic anomalies, showing that MYDs have become drier, hotter, and led to increasingly diminished vegetation greenness. The global terrestrial land affected by MYDs has increased at a rate of 49,279 ± 14,771 square kilometers per year from 1980 to 2018. Temperate grasslands have exhibited the greatest declines in vegetation greenness during MYDs, whereas boreal and tropical forests have had comparably minor responses. With MYDs becoming more common, this global quantitative inventory of the occurrence, severity, trend, and impact of MYDs provides an important benchmark for facilitating more effective and collaborative preparedness toward mitigation of and adaptation to such extreme events.","lang":"eng"}],"acknowledgement":"This study received support from the Extremes Research Program funded by the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) within the EMERGE project of the Extremes program.","volume":387,"year":"2025","citation":{"ama":"Chen L, Brun P, Buri P, et al. Global increase in the occurrence and impact of multiyear droughts. <i>Science</i>. 2025;387(6731):278-284. doi:<a href=\"https://doi.org/10.1126/science.ado4245\">10.1126/science.ado4245</a>","mla":"Chen, Liangzhi, et al. “Global Increase in the Occurrence and Impact of Multiyear Droughts.” <i>Science</i>, vol. 387, no. 6731, AAAS, 2025, pp. 278–84, doi:<a href=\"https://doi.org/10.1126/science.ado4245\">10.1126/science.ado4245</a>.","ista":"Chen L, Brun P, Buri P, Fatichi S, Gessler A, McCarthy M, Pellicciotti F, Stocker B, Karger DN. 2025. Global increase in the occurrence and impact of multiyear droughts. Science. 387(6731), 278–284.","short":"L. Chen, P. Brun, P. Buri, S. Fatichi, A. Gessler, M. McCarthy, F. Pellicciotti, B. Stocker, D.N. Karger, Science 387 (2025) 278–284.","ieee":"L. Chen <i>et al.</i>, “Global increase in the occurrence and impact of multiyear droughts,” <i>Science</i>, vol. 387, no. 6731. AAAS, pp. 278–284, 2025.","chicago":"Chen, Liangzhi, Philipp Brun, Pascal Buri, Simone Fatichi, Arthur Gessler, Michael McCarthy, Francesca Pellicciotti, Benjamin Stocker, and Dirk Nikolaus Karger. “Global Increase in the Occurrence and Impact of Multiyear Droughts.” <i>Science</i>. AAAS, 2025. <a href=\"https://doi.org/10.1126/science.ado4245\">https://doi.org/10.1126/science.ado4245</a>.","apa":"Chen, L., Brun, P., Buri, P., Fatichi, S., Gessler, A., McCarthy, M., … Karger, D. N. (2025). Global increase in the occurrence and impact of multiyear droughts. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.ado4245\">https://doi.org/10.1126/science.ado4245</a>"},"publication_status":"published","OA_type":"closed access","doi":"10.1126/science.ado4245","intvolume":"       387","publication":"Science","oa_version":"None","isi":1,"date_updated":"2025-09-30T10:24:34Z","article_type":"original","department":[{"_id":"FrPe"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2025-02-02T23:01:54Z","month":"01","_id":"18985"},{"quality_controlled":"1","publisher":"American Physical Society","project":[{"name":"Prix Lopez-Loretta 2019 - Marco Mondelli","_id":"059876FA-7A3F-11EA-A408-12923DDC885E"}],"status":"public","acknowledgement":"J.B., F.C., and Y.X. were funded by the European Union (ERC, CHORAL, Project No. 101039794). Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. M.M. was supported by the 2019 Lopez-Loreta Prize. J.B. acknowledges discussions with TianQi Hou at the initial stage of the project, as well as with Antoine Bodin.","title":"Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise","abstract":[{"lang":"eng","text":"We consider a prototypical problem of Bayesian inference for a structured spiked model: a low-rank signal is corrupted by additive noise. While both information-theoretic and algorithmic limits are well understood when the noise is a Gaussian Wigner matrix, the more realistic case of structured noise still remains challenging. To capture the structure while maintaining mathematical tractability, a line of work has focused on rotationally invariant noise. However, existing studies either provide suboptimal algorithms or are limited to a special class of noise ensembles. In this paper, using tools from statistical physics (replica method) and random matrix theory (generalized spherical integrals) we establish the characterization of the information-theoretic limits for a noise matrix drawn from a general trace ensemble. Remarkably, our analysis unveils the asymptotic equivalence between the rotationally invariant model and a surrogate Gaussian one. Finally, we show how to saturate the predicted statistical limits using an efficient algorithm inspired by the theory of adaptive Thouless-Anderson-Palmer (TAP) equations."}],"publication_status":"published","OA_place":"publisher","citation":{"apa":"Barbier, J., Camilli, F., Xu, Y., &#38; Mondelli, M. (2025). Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">https://doi.org/10.1103/PhysRevResearch.7.013081</a>","chicago":"Barbier, Jean, Francesco Camilli, Yizhou Xu, and Marco Mondelli. “Information Limits and Thouless-Anderson-Palmer Equations for Spiked Matrix Models with Structured Noise.” <i>Physical Review Research</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">https://doi.org/10.1103/PhysRevResearch.7.013081</a>.","ieee":"J. Barbier, F. Camilli, Y. Xu, and M. Mondelli, “Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise,” <i>Physical Review Research</i>, vol. 7. American Physical Society, 2025.","short":"J. Barbier, F. Camilli, Y. Xu, M. Mondelli, Physical Review Research 7 (2025).","ista":"Barbier J, Camilli F, Xu Y, Mondelli M. 2025. Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. Physical Review Research. 7, 013081.","mla":"Barbier, Jean, et al. “Information Limits and Thouless-Anderson-Palmer Equations for Spiked Matrix Models with Structured Noise.” <i>Physical Review Research</i>, vol. 7, 013081, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">10.1103/PhysRevResearch.7.013081</a>.","ama":"Barbier J, Camilli F, Xu Y, Mondelli M. Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. <i>Physical Review Research</i>. 2025;7. doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">10.1103/PhysRevResearch.7.013081</a>"},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":7,"year":"2025","doi":"10.1103/PhysRevResearch.7.013081","OA_type":"gold","publication":"Physical Review Research","oa_version":"Published Version","intvolume":"         7","file_date_updated":"2025-02-03T08:27:59Z","related_material":{"link":[{"url":"https://github.com/xu-yz19/spiked-matrix-models-with-structured-noise","relation":"software"}]},"oa":1,"date_updated":"2026-05-06T12:57:36Z","file":[{"creator":"dernst","file_name":"2025_PhysReviewResearch_Barbier.pdf","date_updated":"2025-02-03T08:27:59Z","file_id":"18988","success":1,"content_type":"application/pdf","date_created":"2025-02-03T08:27:59Z","access_level":"open_access","relation":"main_file","file_size":702543,"checksum":"52c5f72d80ffc928542469114fcdb62b"}],"date_created":"2025-02-02T23:01:54Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","APC_amount":"3272,21 EUR","article_type":"original","department":[{"_id":"MaMo"}],"DOAJ_listed":"1","_id":"18986","month":"01","day":"22","type":"journal_article","article_processing_charge":"Yes","article_number":"013081","scopus_import":"1","publication_identifier":{"issn":["2643-1564"]},"author":[{"last_name":"Barbier","full_name":"Barbier, Jean","first_name":"Jean"},{"first_name":"Francesco","full_name":"Camilli, Francesco","last_name":"Camilli"},{"first_name":"Yizhou","full_name":"Xu, Yizhou","last_name":"Xu"},{"orcid":"0000-0002-3242-7020","last_name":"Mondelli","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","full_name":"Mondelli, Marco"}],"date_published":"2025-01-22T00:00:00Z","external_id":{"arxiv":["2405.20993"]},"arxiv":1,"language":[{"iso":"eng"}],"has_accepted_license":"1","fulldoi":"https://doi.org/10.1103/PhysRevResearch.7.013081","ddc":["530"]},{"language":[{"iso":"eng"}],"external_id":{"pmid":["39963288"]},"pmid":1,"date_published":"2025-01-01T00:00:00Z","has_accepted_license":"1","fulldoi":"https://doi.org/10.1093/braincomms/fcae453","ddc":["570"],"type":"journal_article","article_processing_charge":"Yes","PlanS_conform":"1","day":"01","scopus_import":"1","publication_identifier":{"eissn":["2632-1297"]},"author":[{"last_name":"Kaiyrzhanov","first_name":"Rauan","full_name":"Kaiyrzhanov, Rauan"},{"last_name":"Thompson","full_name":"Thompson, Kyle","first_name":"Kyle"},{"last_name":"Efthymiou","full_name":"Efthymiou, Stephanie","first_name":"Stephanie"},{"last_name":"Mukushev","first_name":"Askhat","full_name":"Mukushev, Askhat"},{"last_name":"Zharylkassyn","full_name":"Zharylkassyn, Akbota","first_name":"Akbota"},{"full_name":"Prasad, Chitra","first_name":"Chitra","last_name":"Prasad"},{"full_name":"Karimiani, Ehsan Ghayoor","first_name":"Ehsan Ghayoor","last_name":"Karimiani"},{"full_name":"Alvi, Javeria Raza","first_name":"Javeria Raza","last_name":"Alvi"},{"last_name":"Niyazov","first_name":"Dmitriy","full_name":"Niyazov, Dmitriy"},{"last_name":"Alahmad","first_name":"Ahmad","full_name":"Alahmad, Ahmad"},{"full_name":"Babaei, Meisam","first_name":"Meisam","last_name":"Babaei"},{"last_name":"Tajsharghi","first_name":"Homa","full_name":"Tajsharghi, Homa"},{"last_name":"Albash","first_name":"Buthaina","full_name":"Albash, Buthaina"},{"last_name":"Alaqeel","full_name":"Alaqeel, Ahmad","first_name":"Ahmad"},{"first_name":"Majida","full_name":"Charif, Majida","last_name":"Charif"},{"full_name":"Hashemi, Narges","first_name":"Narges","last_name":"Hashemi"},{"last_name":"Heidari","full_name":"Heidari, Morteza","first_name":"Morteza"},{"last_name":"Kalantar","full_name":"Kalantar, Seyed Mehdi","first_name":"Seyed Mehdi"},{"full_name":"Lenaers, Guy","first_name":"Guy","last_name":"Lenaers"},{"full_name":"Mehrjardi, Mohammad Yahya Vahidi","first_name":"Mohammad Yahya Vahidi","last_name":"Mehrjardi"},{"first_name":"Varunvenkat M.","full_name":"Srinivasan, Varunvenkat M.","last_name":"Srinivasan"},{"first_name":"Vykuntaraju K.","full_name":"Gowda, Vykuntaraju K.","last_name":"Gowda"},{"first_name":"Seyed Hamidreza","full_name":"Mirabutalebi, Seyed Hamidreza","last_name":"Mirabutalebi"},{"first_name":"Deanna Alexis","full_name":"Carere, Deanna Alexis","last_name":"Carere"},{"full_name":"Movahedinia, Mojtaba","first_name":"Mojtaba","last_name":"Movahedinia"},{"last_name":"Murphy","first_name":"David","full_name":"Murphy, David"},{"last_name":"Mcfarland","full_name":"Mcfarland, Robert","first_name":"Robert"},{"last_name":"Abdel-Hamid","first_name":"Mohamed S.","full_name":"Abdel-Hamid, Mohamed S."},{"full_name":"Elhossini, Rasha M.","first_name":"Rasha M.","last_name":"Elhossini"},{"first_name":"Shahryar","full_name":"Alavi, Shahryar","last_name":"Alavi"},{"last_name":"Napier","first_name":"Melanie","full_name":"Napier, Melanie"},{"full_name":"Belanger-Quintana, Amaya","first_name":"Amaya","last_name":"Belanger-Quintana"},{"full_name":"Prasad, Asuri N.","first_name":"Asuri N.","last_name":"Prasad"},{"full_name":"Jakobczyk, Jessica","first_name":"Jessica","last_name":"Jakobczyk"},{"first_name":"Agathe","full_name":"Roubertie, Agathe","last_name":"Roubertie"},{"full_name":"Rupar, Tony","first_name":"Tony","last_name":"Rupar"},{"last_name":"Sultan","first_name":"Tipu","full_name":"Sultan, Tipu"},{"last_name":"Toosi","first_name":"Mehran Beiraghi","full_name":"Toosi, Mehran Beiraghi"},{"last_name":"Sazanov","orcid":"0000-0002-0977-7989","first_name":"Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","full_name":"Sazanov, Leonid A"},{"last_name":"Severino","first_name":"Mariasavina","full_name":"Severino, Mariasavina"},{"first_name":"Henry","full_name":"Houlden, Henry","last_name":"Houlden"},{"full_name":"Taylor, Robert W.","first_name":"Robert W.","last_name":"Taylor"},{"last_name":"Maroofian","first_name":"Reza","full_name":"Maroofian, Reza"}],"article_number":"fcae453","oa":1,"date_updated":"2025-08-05T11:55:15Z","file":[{"checksum":"bdf39b64d1c1d833a20b62836751fe44","file_size":1420646,"relation":"main_file","access_level":"open_access","date_created":"2025-08-05T11:54:23Z","content_type":"application/pdf","success":1,"file_id":"20126","date_updated":"2025-08-05T11:54:23Z","file_name":"2025_BrainComm_Kaiyrzhanov.pdf","creator":"dernst"}],"oa_version":"Published Version","publication":"Brain Communications","intvolume":"         7","file_date_updated":"2025-08-05T11:54:23Z","DOAJ_listed":"1","_id":"18987","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2025-02-02T23:01:55Z","article_type":"original","department":[{"_id":"LeSa"}],"acknowledgement":"We thank all individuals and relatives for consent to be part of the study. Families 1–4, 7, were collected as part of the SYNaPS Study Group collaboration funded by The Wellcome Trust and strategic award (Synaptopathies) funding (WT093205 MA and WT104033AIA), and research was conducted as part of the Queen Square Genomics group at the University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre. We are also grateful to Queen Square Genomics at the Institute of Neurology University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre, for the bioinformatics support. For the purpose of Open Access, the author has applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission.\r\nThis study was funded by the Medical Research Council (MR/S01165X/1, MR/S005021/1, G0601943). The Medical Research Council (MR/S01165X/1, MR/S005021/1, MRC ICGNMD), Wellcome Trust 221951/Z/20/Z, Global Parkinson’s Genetics Program, Aligning Science Across Parkinson’s, The Michael J. Fox Foundation, The National Institute for Health Research University College London Hospitals Biomedical Research Centre, Rosetree Trust, Multiple System Atrophy Trust, Brain Research UK, Sparks Great Ormond Street Hospital Charity, Muscular Dystrophy, Muscular Dystrophy Association United States of America, and King Baudouin Foundation. H.T. was supported by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 608473. M.S.A.-H. is funded by the Science and Technology Development Fund Academy of Science Research and Technology Egypt (Grant number: 33492, Ethical approval number: 20066). R.W.T. is funded by the Wellcome Centre for Mitochondrial Research (203105/Z/16/Z), the Mitochondrial Disease Patient Cohort (UK) (G0800674), the Medical Research Council International Centre for Genomic Medicine in Neuromuscular Disease (MR/S005021/1), the Medical Research Council (MR/W019027/1), the Lily Foundation, Mito Foundation, the Pathological Society, LifeArc, the UK National Institute for Health Research Biomedical Research Centre for Ageing and Age-related disease award to the Newcastle upon Tyne Foundation Hospitals NHS Trust and the UK NHS Highly Specialised Service for Rare Mitochondrial Disorders of Adults and Children. H.H. and R.K. are supported by Global Parkinson’s Genetic Program and The Michael J. Fox Foundation Grant ID: MJFF-022153.","title":"Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment","abstract":[{"lang":"eng","text":"Biallelic variants in NADH (nicotinamide adenine dinucleotide (NAD) + hydrogen (H))-ubiquinone oxidoreductase 1 alpha subcomplex 13 have been linked to mitochondrial complex I deficiency, nuclear type 28, based on three affected individuals from two families. With only two families reported, the clinical and molecular spectrum of NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related diseases remains unclear. We report 10 additional affected individuals from nine independent families, identifying four missense variants (including recurrent c.170G > A) and three ultra-rare or novel predicted loss-of-function biallelic variants. Updated clinical–radiological data from previously reported families and a literature review compiling clinical features of all reported patients with isolated complex I deficiency caused by 43 genes encoding complex I subunits and assembly factors are also provided. Our cohort (mean age 7.8 ± 5.4 years; range 2.5–18) predominantly presented a moderate-to-severe neurodevelopmental syndrome with oculomotor abnormalities (84%), spasticity/hypertonia (83%), hypotonia (69%), cerebellar ataxia (66%), movement disorders (58%) and epilepsy (46%). Neuroimaging revealed bilateral symmetric T2 hyperintense substantia nigra lesions (91.6%) and optic nerve atrophy (66.6%). Protein modeling suggests missense variants destabilize a critical junction between the hydrophilic and membrane arms of complex I. Fibroblasts from two patients showed reduced complex I activity and compensatory complex IV activity increase. This study characterizes NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related disease in 13 individuals, highlighting genotype–phenotype correlations."}],"quality_controlled":"1","publisher":"Oxford University Press","status":"public","issue":"1","doi":"10.1093/braincomms/fcae453","OA_type":"gold","OA_place":"publisher","publication_status":"published","citation":{"ista":"Kaiyrzhanov R, Thompson K, Efthymiou S, Mukushev A, Zharylkassyn A, Prasad C, Karimiani EG, Alvi JR, Niyazov D, Alahmad A, Babaei M, Tajsharghi H, Albash B, Alaqeel A, Charif M, Hashemi N, Heidari M, Kalantar SM, Lenaers G, Mehrjardi MYV, Srinivasan VM, Gowda VK, Mirabutalebi SH, Carere DA, Movahedinia M, Murphy D, Mcfarland R, Abdel-Hamid MS, Elhossini RM, Alavi S, Napier M, Belanger-Quintana A, Prasad AN, Jakobczyk J, Roubertie A, Rupar T, Sultan T, Toosi MB, Sazanov LA, Severino M, Houlden H, Taylor RW, Maroofian R. 2025. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. Brain Communications. 7(1), fcae453.","mla":"Kaiyrzhanov, Rauan, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>, vol. 7, no. 1, fcae453, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>.","ama":"Kaiyrzhanov R, Thompson K, Efthymiou S, et al. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. 2025;7(1). doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>","apa":"Kaiyrzhanov, R., Thompson, K., Efthymiou, S., Mukushev, A., Zharylkassyn, A., Prasad, C., … Maroofian, R. (2025). Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>","chicago":"Kaiyrzhanov, Rauan, Kyle Thompson, Stephanie Efthymiou, Askhat Mukushev, Akbota Zharylkassyn, Chitra Prasad, Ehsan Ghayoor Karimiani, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>.","ieee":"R. Kaiyrzhanov <i>et al.</i>, “Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment,” <i>Brain Communications</i>, vol. 7, no. 1. Oxford University Press, 2025.","short":"R. Kaiyrzhanov, K. Thompson, S. Efthymiou, A. Mukushev, A. Zharylkassyn, C. Prasad, E.G. Karimiani, J.R. Alvi, D. Niyazov, A. Alahmad, M. Babaei, H. Tajsharghi, B. Albash, A. Alaqeel, M. Charif, N. Hashemi, M. Heidari, S.M. Kalantar, G. Lenaers, M.Y.V. Mehrjardi, V.M. Srinivasan, V.K. Gowda, S.H. Mirabutalebi, D.A. Carere, M. Movahedinia, D. Murphy, R. Mcfarland, M.S. Abdel-Hamid, R.M. Elhossini, S. Alavi, M. Napier, A. Belanger-Quintana, A.N. Prasad, J. Jakobczyk, A. Roubertie, T. Rupar, T. Sultan, M.B. Toosi, L.A. Sazanov, M. Severino, H. Houlden, R.W. Taylor, R. Maroofian, Brain Communications 7 (2025)."},"volume":7,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2025"},{"author":[{"orcid":"0009-0004-2973-278X","last_name":"Chiossi","full_name":"Chiossi, Heloisa","first_name":"Heloisa","id":"2BBA502C-F248-11E8-B48F-1D18A9856A87"}],"corr_author":"1","article_processing_charge":"No","acknowledged_ssus":[{"_id":"PreCl"},{"_id":"M-Shop"}],"contributor":[{"last_name":"Nardin","orcid":"0000-0001-8849-6570","contributor_type":"researcher","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","first_name":"Michele"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper","contributor_type":"supervisor","last_name":"Tkačik","orcid":"0000-0002-6699-1455"},{"orcid":"0000-0002-5193-4036","last_name":"Csicsvari","contributor_type":"supervisor","first_name":"Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87"}],"type":"research_data","day":"04","fulldoi":"https://doi.org/10.15479/AT:ISTA:18991","ddc":["570"],"has_accepted_license":"1","keyword":["hippocampus","electrophysiology","behavior"],"date_published":"2025-02-04T00:00:00Z","OA_type":"gold","doi":"10.15479/AT:ISTA:18991","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"year":"2025","OA_place":"repository","citation":{"ieee":"H. S. C. Chiossi, “Research data for the publication ‘Learning reshapes the hippocampal representation hierarchy.’” Institute of Science and Technology Austria, 2025.","short":"H.S.C. Chiossi, (2025).","apa":"Chiossi, H. S. C. (2025). Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">https://doi.org/10.15479/AT:ISTA:18991</a>","chicago":"Chiossi, Heloisa S. C. “Research Data for the Publication ‘Learning Reshapes the Hippocampal Representation Hierarchy.’” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">https://doi.org/10.15479/AT:ISTA:18991</a>.","mla":"Chiossi, Heloisa S. C. <i>Research Data for the Publication “Learning Reshapes the Hippocampal Representation Hierarchy.”</i> Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>.","ama":"Chiossi HSC. Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” 2025. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>","ista":"Chiossi HSC. 2025. Research data for the publication ‘Learning reshapes the hippocampal representation hierarchy’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>."},"abstract":[{"lang":"eng","text":"Research data for the article \"Learning reshapes the hippocampal representation hierarchy\" from Chiossi et al. (PNAS, 2025). The data includes hippocampal CA1 unit activity and behaviour tracking of 5 Long Evans rats during the learning of an associative memory task. Detailed information can be found in the 'readme.txt' file."}],"title":"Research data for the publication \"Learning reshapes the hippocampal representation hierarchy\"","acknowledgement":"Thanks to Rebecca Morse for performing one of the experiments under H.S.C.C. supervision and Jago Wallenschus for technical support, especially with maze design.","publisher":"Institute of Science and Technology Austria","status":"public","month":"02","_id":"18991","department":[{"_id":"GradSch"},{"_id":"JoCs"},{"_id":"GaTk"}],"date_created":"2025-02-04T10:36:18Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"file":[{"access_level":"open_access","date_created":"2025-02-04T10:16:52Z","content_type":"application/zip","file_size":769383201,"checksum":"04d761ed42e8879abffde04a560409ce","relation":"main_file","creator":"hchiossi","file_name":"Chiossi_etal_2025_PNAS_data.zip","success":1,"date_updated":"2025-02-04T10:16:52Z","file_id":"18992"},{"access_level":"open_access","content_type":"text/plain","date_created":"2025-02-04T10:18:33Z","checksum":"50602931dcd33e4f009ed46af11335f3","file_size":3215,"relation":"main_file","creator":"hchiossi","file_name":"readme.txt","file_id":"18993","date_updated":"2025-02-04T10:18:33Z","success":1}],"date_updated":"2026-05-06T13:12:00Z","related_material":{"record":[{"id":"19453","status":"public","relation":"used_in_publication"}]},"file_date_updated":"2025-02-04T10:18:33Z","oa_version":"Published Version"},{"status":"public","issue":"4","publisher":"Elsevier","quality_controlled":"1","abstract":[{"lang":"eng","text":"A k-subcolouring of a graph G is a function f : V (G) → {0,...,k − 1} such that the set of\r\nvertices coloured i induce a disjoint union of cliques. The subchromatic number, χsub(G),\r\nis the minimum k such that G admits a k-subcolouring. Nešetril, ˇ Ossona de Mendez,\r\nPilipczuk, and Zhu (2020), recently raised the problem of finding tight upper bounds for\r\nχsub(G2) when G is planar. We show that χsub(G2) ≤ 43 when G is planar, improving\r\ntheir bound of 135. We give even better bounds when the planar graph G has larger girth.\r\nMoreover, we show that χsub(G3) ≤ 95, improving the previous bound of 364. For these\r\nwe adapt some recent techniques of Almulhim and Kierstead (2022), while also extending\r\nthe decompositions of triangulated planar graphs of Van den Heuvel, Ossona de Mendez,\r\nQuiroz, Rabinovich and Siebertz (2017), to planar graphs of arbitrary girth. Note that these\r\ndecompositions are the precursors of the graph product structure theorem of planar graphs.\r\nWe give improved bounds for χsub(Gp) for all p ≥ 2, whenever G has bounded treewidth,\r\nbounded simple treewidth, bounded genus, or excludes a clique or biclique as a minor.\r\nFor this we introduce a family of parameters which form a gradation between the strong\r\nand the weak colouring numbers. We give upper bounds for these parameters for graphs\r\ncoming from such classes.\r\nFinally, we give a 2-approximation algorithm for the subchromatic number of graphs\r\nhaving a layering in which each layer has bounded cliquewidth and this layering is\r\ncomputable in polynomial time (like the class of all dth powers of planar graphs, for fixed\r\nd). This algorithm works even if the power p and the graph G is unknown."}],"title":"Subchromatic numbers of powers of graphs with excluded minors","acknowledgement":"We thank an anonymous referee for pointing out an error in an earlier version of Theorem 3.1. We also thank an anonymous referee for pointing out numerous typos in an earlier version of the paper.","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2025","volume":348,"publication_status":"published","OA_place":"publisher","citation":{"ista":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. 2025. Subchromatic numbers of powers of graphs with excluded minors. Discrete Mathematics. 348(4), 114377.","ama":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. 2025;348(4). doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>","mla":"Cortés, Pedro P., et al. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>, vol. 348, no. 4, 114377, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>.","chicago":"Cortés, Pedro P., Pankaj Kumar, Benjamin Moore, Patrice Ossona de Mendez, and Daniel A. Quiroz. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>.","apa":"Cortés, P. P., Kumar, P., Moore, B., Ossona de Mendez, P., &#38; Quiroz, D. A. (2025). Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>","short":"P.P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, D.A. Quiroz, Discrete Mathematics 348 (2025).","ieee":"P. P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, and D. A. Quiroz, “Subchromatic numbers of powers of graphs with excluded minors,” <i>Discrete Mathematics</i>, vol. 348, no. 4. Elsevier, 2025."},"OA_type":"hybrid","doi":"10.1016/j.disc.2024.114377","file_date_updated":"2025-05-05T12:56:12Z","intvolume":"       348","publication":"Discrete Mathematics","oa_version":"Published Version","file":[{"relation":"main_file","checksum":"6723cbb02b6aea0d05f37d167da00c03","file_size":850988,"date_created":"2025-05-05T12:56:12Z","content_type":"application/pdf","access_level":"open_access","success":1,"file_id":"19657","date_updated":"2025-05-05T12:56:12Z","creator":"dernst","file_name":"2025_DiscreteMath_Cortes.pdf"}],"isi":1,"date_updated":"2025-09-30T10:25:15Z","oa":1,"department":[{"_id":"MaKw"}],"article_type":"original","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2025-02-05T06:51:08Z","month":"04","_id":"19002","day":"01","article_processing_charge":"Yes (via OA deal)","type":"journal_article","corr_author":"1","article_number":"114377","author":[{"first_name":"Pedro P.","full_name":"Cortés, Pedro P.","last_name":"Cortés"},{"last_name":"Kumar","full_name":"Kumar, Pankaj","first_name":"Pankaj"},{"full_name":"Moore, Benjamin","id":"6dc1a1be-bf1c-11ed-8d2b-d044840f49d6","first_name":"Benjamin","last_name":"Moore"},{"full_name":"Ossona de Mendez, Patrice","first_name":"Patrice","last_name":"Ossona de Mendez"},{"first_name":"Daniel A.","full_name":"Quiroz, Daniel A.","last_name":"Quiroz"}],"scopus_import":"1","publication_identifier":{"issn":["0012-365X"]},"arxiv":1,"external_id":{"arxiv":["2306.02195"],"isi":["001401656900001"]},"date_published":"2025-04-01T00:00:00Z","language":[{"iso":"eng"}],"ddc":["510"],"fulldoi":"https://doi.org/10.1016/j.disc.2024.114377","has_accepted_license":"1"},{"scopus_import":"1","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"author":[{"last_name":"Vodeb","full_name":"Vodeb, Jaka","first_name":"Jaka"},{"last_name":"Desaules","orcid":"0000-0002-3749-6375","full_name":"Desaules, Jean-Yves Marc","first_name":"Jean-Yves Marc","id":"6c292945-a610-11ed-9eec-c3be1ad62a80"},{"last_name":"Hallam","first_name":"Andrew","full_name":"Hallam, Andrew"},{"first_name":"Andrea","full_name":"Rava, Andrea","last_name":"Rava"},{"last_name":"Humar","full_name":"Humar, Gregor","first_name":"Gregor"},{"full_name":"Willsch, Dennis","first_name":"Dennis","last_name":"Willsch"},{"first_name":"Fengping","full_name":"Jin, Fengping","last_name":"Jin"},{"full_name":"Willsch, Madita","first_name":"Madita","last_name":"Willsch"},{"full_name":"Michielsen, Kristel","first_name":"Kristel","last_name":"Michielsen"},{"last_name":"Papić","full_name":"Papić, Zlatko","first_name":"Zlatko"}],"corr_author":"1","page":"386-392","type":"journal_article","article_processing_charge":"Yes (via OA deal)","PlanS_conform":"1","day":"01","has_accepted_license":"1","fulldoi":"https://doi.org/10.1038/s41567-024-02765-w","ddc":["530"],"language":[{"iso":"eng"}],"external_id":{"pmid":["40093970"],"arxiv":["2406.14718"],"isi":["001412684400001"]},"date_published":"2025-03-01T00:00:00Z","pmid":1,"arxiv":1,"doi":"10.1038/s41567-024-02765-w","OA_type":"hybrid","citation":{"short":"J. Vodeb, J.-Y.M. Desaules, A. Hallam, A. Rava, G. Humar, D. Willsch, F. Jin, M. Willsch, K. Michielsen, Z. Papić, Nature Physics 21 (2025) 386–392.","ieee":"J. Vodeb <i>et al.</i>, “Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer,” <i>Nature Physics</i>, vol. 21. Springer Nature, pp. 386–392, 2025.","chicago":"Vodeb, Jaka, Jean-Yves Marc Desaules, Andrew Hallam, Andrea Rava, Gregor Humar, Dennis Willsch, Fengping Jin, Madita Willsch, Kristel Michielsen, and Zlatko Papić. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>.","apa":"Vodeb, J., Desaules, J.-Y. M., Hallam, A., Rava, A., Humar, G., Willsch, D., … Papić, Z. (2025). Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>","ama":"Vodeb J, Desaules J-YM, Hallam A, et al. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. 2025;21:386-392. doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>","mla":"Vodeb, Jaka, et al. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>, vol. 21, Springer Nature, 2025, pp. 386–92, doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>.","ista":"Vodeb J, Desaules J-YM, Hallam A, Rava A, Humar G, Willsch D, Jin F, Willsch M, Michielsen K, Papić Z. 2025. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. Nature Physics. 21, 386–392."},"OA_place":"publisher","publication_status":"published","year":"2025","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":21,"acknowledgement":"J.V., D.W. and M.W. acknowledge support from the project Jülich UNified Infrastructure for Quantum computing (JUNIQ) that has received funding from the German Federal Ministry of Education and Research (BMBF) and the Ministry of Culture and Science of the State of North Rhine-Westphalia. A.R. acknowledges support from the project HPCQS (101018180) of the European High-Performance Computing Joint Undertaking (EuroHPC JU). J.-Y.D., A.H. and Z.P. acknowledge support from the Leverhulme Trust Research Leadership Award RL-2019-015 and EPSRC grant nos. EP/R513258/1 and EP/W026848/1. J.-Y.D. acknowledges support from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no.101034413. This research was supported in part by grant no. NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP). Computational portions of this research work were carried out on ARC3 and ARC4, part of the high-performance computing facilities at the University of Leeds. G.H. acknowledges financial support from ARIS, P1-0040 Nonequilibrium Quantum System Dynamics. We gratefully acknowledge the Jülich Supercomputing Centre (https://www.fz-juelich.de/en/ias/jsc) for funding this project by providing computing time on the D-Wave Advantage System JUPSI through JUNIQ. We acknowledge helpful theoretical discussions with G. Lagnese and the quantum-simulation-related discussions with D-Wave’s experimental team, particularly A. MacDonald, G. Poulin-Lamarre, A. Daian and A. Berkley. We also thank V. Goliber and A. Mason for patiently organizing and mediating the corresponding meetings that enabled the discussions with D-Wave’s team. J.V., A.R., D.W., F.J., M.W. and K.M. gratefully acknowledge the Gauss Centre for Supercomputing e.V. (www.gauss-centre.eu) for funding this project by providing computing time on the GCS Supercomputer JUWELS at Jülich Supercomputing Centre (JSC).","abstract":[{"lang":"eng","text":"False vacuum decay—the transition from a metastable quantum state to a true vacuum state—plays an important role in quantum field theory and non-equilibrium phenomena such as phase transitions and dynamical metastability. The non-perturbative nature of false vacuum decay and the limited experimental access to this process make it challenging to study, leaving several open questions regarding how true vacuum bubbles form, move and interact. Here we observe quantized bubble formation in real time, a key feature of false vacuum decay dynamics, using a quantum annealer with 5,564 superconducting flux qubits. We develop an effective model that captures both initial bubble creation and subsequent interactions, and remains accurate under dissipation. The annealer reveals coherent scaling laws in the driven many-body dynamics for more than 1,000 intrinsic qubit time units. This work provides a method for investigating false vacuum dynamics of large quantum systems in quantum annealers."}],"title":"Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer","quality_controlled":"1","project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","call_identifier":"H2020"}],"publisher":"Springer Nature","status":"public","_id":"19012","ec_funded":1,"month":"03","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2025-02-06T10:07:13Z","article_type":"original","department":[{"_id":"MaSe"}],"related_material":{"link":[{"description":"News on ISTA Website","relation":"press_release","url":"https://ista.ac.at/en/news/dancing-bubbles-model-a-cosmic-disaster/"}]},"oa":1,"isi":1,"date_updated":"2025-09-30T10:29:15Z","file":[{"file_size":2252107,"checksum":"b005ccf7448fee29c187cbc9b1944893","relation":"main_file","access_level":"open_access","content_type":"application/pdf","date_created":"2025-08-05T11:56:53Z","date_updated":"2025-08-05T11:56:53Z","file_id":"20127","success":1,"file_name":"2025_NaturePhysics_Vodeb.pdf","creator":"dernst"}],"publication":"Nature Physics","oa_version":"Published Version","intvolume":"        21","file_date_updated":"2025-08-05T11:56:53Z"},{"fulldoi":"https://doi.org/10.1021/acs.est.4c10551","language":[{"iso":"eng"}],"external_id":{"pmid":["39868426"],"isi":["001406914100001"]},"date_published":"2025-01-27T00:00:00Z","pmid":1,"publication_identifier":{"eissn":["1520-5851"],"issn":["0013-936X"]},"scopus_import":"1","author":[{"last_name":"Parrella","first_name":"Francesco","full_name":"Parrella, Francesco"},{"last_name":"Brizzolara","id":"4bbe33b8-c59a-11ee-a1af-fa33d1ac42c4","first_name":"Stefano","full_name":"Brizzolara, Stefano"},{"full_name":"Holzner, Markus","first_name":"Markus","last_name":"Holzner"},{"first_name":"Denise M.","full_name":"Mitrano, Denise M.","last_name":"Mitrano"}],"page":"2257-2265","type":"journal_article","article_processing_charge":"No","day":"27","_id":"19015","month":"01","date_created":"2025-02-09T23:01:50Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_type":"original","department":[{"_id":"BjHo"}],"date_updated":"2025-09-30T10:27:26Z","isi":1,"oa_version":"None","publication":"Environmental Science and Technology","intvolume":"        59","doi":"10.1021/acs.est.4c10551","OA_type":"closed access","publication_status":"published","citation":{"chicago":"Parrella, Francesco, Stefano Brizzolara, Markus Holzner, and Denise M. Mitrano. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>.","apa":"Parrella, F., Brizzolara, S., Holzner, M., &#38; Mitrano, D. M. (2025). Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>","short":"F. Parrella, S. Brizzolara, M. Holzner, D.M. Mitrano, Environmental Science and Technology 59 (2025) 2257–2265.","ieee":"F. Parrella, S. Brizzolara, M. Holzner, and D. M. Mitrano, “Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates,” <i>Environmental Science and Technology</i>, vol. 59, no. 4. American Chemical Society, pp. 2257–2265, 2025.","ista":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. 2025. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. Environmental Science and Technology. 59(4), 2257–2265.","ama":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. 2025;59(4):2257-2265. doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>","mla":"Parrella, Francesco, et al. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>, vol. 59, no. 4, American Chemical Society, 2025, pp. 2257–65, doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>."},"year":"2025","volume":59,"acknowledgement":"F.P. and D.M.M. were funded through the Swiss National Science Foundation (grant number PCEFP2_186856).","title":"Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates","abstract":[{"text":"When microplastics (MPs) enter water bodies, they undergo various transport processes, including sedimentation, which can be influenced by factors such as particle size, density, and interactions with other particles. Surface waters contain suspended natural particles (e.g., clay and silt), which may impact MP settling rates. Here, we investigated how the presence of suspended sediments (SS) influenced the deposition patterns and rates of MPs in turbid waters. We systematically analyzed the settling velocities of particles, including different MP sizes and SS concentrations, in a plexiglass column with a camera array. For each experimental variant, we collected data on thousands of individual MPs, strengthening the statistical analysis of the particles’ velocities. Simultaneous measurements of the SS flow and MPs trajectories revealed that the SS induced complex flow patterns, with MPs spending more time in downwelling flow regions, thereby accelerating MPs sedimentation. This effect was more pronounced when SS were aggregated. Additionally, we found that smaller MP fragments were more affected by the fluctuations than spheres or larger fragments. Collectively, our results provide valuable data for future MP fate models and help to understand the sedimentation processes of MPs in natural waters, which is crucial for assessing their environmental transport and impact.","lang":"eng"}],"quality_controlled":"1","publisher":"American Chemical Society","status":"public","issue":"4"},{"oa":1,"isi":1,"date_updated":"2025-09-30T10:28:07Z","publication":"Canadian Journal of Mathematics","oa_version":"Published Version","month":"01","_id":"19017","article_type":"original","department":[{"_id":"MaKw"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2025-02-10T08:39:46Z","abstract":[{"text":"Let f(r)(n;s,k) denote the maximum number of edges in an n-vertex r-uniform hypergraph containing no subgraph with k edges and at most s vertices. Brown, Erdős and Sós [New directions in the theory of graphs (Proc. Third Ann Arbor Conf., Univ. Michigan 1971), pp. 53--63, Academic Press 1973] conjectured that the limit limn→∞n−2f(3)(n;k+2,k) exists for all k. The value of the limit was previously determined for k=2 in the original paper of Brown, Erdős and Sós, for k=3 by Glock [Bull. Lond. Math. Soc. 51 (2019) 230--236] and for k=4 by Glock, Joos, Kim, Kühn, Lichev and Pikhurko [arXiv:2209.14177, accepted by Proc. Amer. Math. Soc.] while Delcourt and Postle [arXiv:2210.01105, accepted by Proc. Amer. Math. Soc.] proved the conjecture (without determining the limiting value).\r\nIn this paper, we determine the value of the limit in the Brown-Erdős-Sós Problem for k∈{5,6,7}. More generally, we obtain the value of limn→∞n−2f(r)(n;rk−2k+2,k) for all r≥3 and k∈{5,6,7}. In addition, by combining these new values with recent results of Bennett, Cushman and Dudek [arXiv:2309.00182] we obtain new asymptotic values for several generalised Ramsey numbers.","lang":"eng"}],"title":"On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7","publisher":"Cambridge University Press","status":"public","quality_controlled":"1","OA_type":"hybrid","doi":"10.4153/s0008414x25000021","year":"2025","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"OA_place":"publisher","citation":{"apa":"Glock, S., Kim, J., Lichev, L., Pikhurko, O., &#38; Sun, S. (2025). On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. Cambridge University Press. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>","chicago":"Glock, Stefan, Jaehoon Kim, Lyuben Lichev, Oleg Pikhurko, and Shumin Sun. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, 2025. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>.","ieee":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, and S. Sun, “On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7,” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, pp. 1–43, 2025.","short":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, S. Sun, Canadian Journal of Mathematics (2025) 1–43.","ista":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. 2025. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. Canadian Journal of Mathematics., 1–43.","mla":"Glock, Stefan, et al. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>, Cambridge University Press, 2025, pp. 1–43, doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>.","ama":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. 2025:1-43. doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>"},"publication_status":"epub_ahead","language":[{"iso":"eng"}],"arxiv":1,"date_published":"2025-01-06T00:00:00Z","external_id":{"isi":["001416788600001"],"arxiv":["2403.04474"]},"fulldoi":"https://doi.org/10.4153/s0008414x25000021","ddc":["500"],"has_accepted_license":"1","article_processing_charge":"No","type":"journal_article","day":"06","author":[{"last_name":"Glock","first_name":"Stefan","full_name":"Glock, Stefan"},{"full_name":"Kim, Jaehoon","first_name":"Jaehoon","last_name":"Kim"},{"last_name":"Lichev","first_name":"Lyuben","id":"9aa8388e-d003-11ee-8458-c4c1d7447977","full_name":"Lichev, Lyuben"},{"last_name":"Pikhurko","full_name":"Pikhurko, Oleg","first_name":"Oleg"},{"first_name":"Shumin","full_name":"Sun, Shumin","last_name":"Sun"}],"scopus_import":"1","publication_identifier":{"issn":["0008-414X"],"eissn":["1496-4279"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.4153/s0008414x25000021"}],"page":"1-43"},{"oa":1,"date_updated":"2025-09-30T10:28:42Z","isi":1,"publication":"European Journal of Combinatorics","oa_version":"Preprint","intvolume":"       126","_id":"19018","month":"05","date_created":"2025-02-10T09:00:53Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_type":"original","department":[{"_id":"MaKw"}],"acknowledgement":"We are grateful to Dieter Mitsche for related discussions and to several anonymous referees for multiple useful comments.","title":"The semi-random tree process","abstract":[{"text":"The online semi-random graph process is a one-player game which starts with the empty graph on n vertices. At every round, a player (called Builder) is presented with a vertex v chosen uniformly at random and independently from previous rounds, and constructs an edge of their choice that is incident to v. Inspired by recent advances on the semi-random graph process, we define a family of generalized online semi-random models.\r\nWe analyse a particular instance that shares similar features with the original semi-random graph process and determine the hitting times of the classical graph properties minimum degree k,k-connectivity, containment of a perfect matching, a Hamiltonian cycle and an \r\nH-factor for a fixed graph H possessing an additional tree-like property. Along the way, we derive a few consequences of the famous Aldous-Broder algorithm that may be of independent interest.","lang":"eng"}],"quality_controlled":"1","publisher":"Elsevier","status":"public","doi":"10.1016/j.ejc.2025.104120","OA_type":"green","OA_place":"repository","publication_status":"published","citation":{"chicago":"Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” <i>European Journal of Combinatorics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">https://doi.org/10.1016/j.ejc.2025.104120</a>.","apa":"Burova, S., &#38; Lichev, L. (2025). The semi-random tree process. <i>European Journal of Combinatorics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">https://doi.org/10.1016/j.ejc.2025.104120</a>","short":"S. Burova, L. Lichev, European Journal of Combinatorics 126 (2025).","ieee":"S. Burova and L. Lichev, “The semi-random tree process,” <i>European Journal of Combinatorics</i>, vol. 126. Elsevier, 2025.","ista":"Burova S, Lichev L. 2025. The semi-random tree process. European Journal of Combinatorics. 126, 104120.","ama":"Burova S, Lichev L. The semi-random tree process. <i>European Journal of Combinatorics</i>. 2025;126. doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">10.1016/j.ejc.2025.104120</a>","mla":"Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” <i>European Journal of Combinatorics</i>, vol. 126, 104120, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">10.1016/j.ejc.2025.104120</a>."},"year":"2025","volume":126,"language":[{"iso":"eng"}],"external_id":{"isi":["001420659400001"],"arxiv":["2204.07376 "]},"date_published":"2025-05-01T00:00:00Z","arxiv":1,"fulldoi":"https://doi.org/10.1016/j.ejc.2025.104120","type":"journal_article","article_processing_charge":"No","day":"01","scopus_import":"1","publication_identifier":{"issn":["0195-6698"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2204.07376","open_access":"1"}],"author":[{"first_name":"Sofiya","full_name":"Burova, Sofiya","last_name":"Burova"},{"last_name":"Lichev","id":"9aa8388e-d003-11ee-8458-c4c1d7447977","first_name":"Lyuben","full_name":"Lichev, Lyuben"}],"article_number":"104120"},{"ddc":["570"],"fulldoi":"https://doi.org/10.1186/s13148-025-01818-y","has_accepted_license":"1","date_published":"2025-01-25T00:00:00Z","pmid":1,"external_id":{"isi":["001406495600001"],"pmid":["39863868"]},"language":[{"iso":"eng"}],"article_number":"14","author":[{"last_name":"Bernabeu","full_name":"Bernabeu, Elena","first_name":"Elena"},{"first_name":"Aleksandra D.","full_name":"Chybowska, Aleksandra D.","last_name":"Chybowska"},{"first_name":"Jacob K.","full_name":"Kresovich, Jacob K.","last_name":"Kresovich"},{"first_name":"Matthew","full_name":"Suderman, Matthew","last_name":"Suderman"},{"last_name":"Mccartney","full_name":"Mccartney, Daniel L.","first_name":"Daniel L."},{"last_name":"Hillary","first_name":"Robert F.","full_name":"Hillary, Robert F."},{"first_name":"Janie","full_name":"Corley, Janie","last_name":"Corley"},{"full_name":"Valdés-Hernández, Maria Del C.","first_name":"Maria Del C.","last_name":"Valdés-Hernández"},{"last_name":"Maniega","first_name":"Susana Muñoz","full_name":"Maniega, Susana Muñoz"},{"full_name":"Bastin, Mark E.","first_name":"Mark E.","last_name":"Bastin"},{"last_name":"Wardlaw","full_name":"Wardlaw, Joanna M.","first_name":"Joanna M."},{"first_name":"Zongli","full_name":"Xu, Zongli","last_name":"Xu"},{"last_name":"Sandler","first_name":"Dale P.","full_name":"Sandler, Dale P."},{"last_name":"Campbell","first_name":"Archie","full_name":"Campbell, Archie"},{"last_name":"Harris","full_name":"Harris, Sarah E.","first_name":"Sarah E."},{"last_name":"Mcintosh","first_name":"Andrew M.","full_name":"Mcintosh, Andrew M."},{"full_name":"Taylor, Jack A.","first_name":"Jack A.","last_name":"Taylor"},{"full_name":"Yousefi, Paul","first_name":"Paul","last_name":"Yousefi"},{"full_name":"Cox, Simon R.","first_name":"Simon R.","last_name":"Cox"},{"full_name":"Evans, Kathryn L.","first_name":"Kathryn L.","last_name":"Evans"},{"last_name":"Robinson","orcid":"0000-0001-8982-8813","full_name":"Robinson, Matthew Richard","first_name":"Matthew Richard","id":"E5D42276-F5DA-11E9-8E24-6303E6697425"},{"full_name":"Vallejos, Catalina A.","first_name":"Catalina A.","last_name":"Vallejos"},{"first_name":"Riccardo E.","full_name":"Marioni, Riccardo E.","last_name":"Marioni"}],"publication_identifier":{"issn":["1868-7075"],"eissn":["1868-7083"]},"scopus_import":"1","day":"25","article_processing_charge":"Yes","type":"journal_article","department":[{"_id":"MaRo"}],"article_type":"original","date_created":"2025-02-16T23:02:33Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","_id":"19023","DOAJ_listed":"1","file_date_updated":"2025-02-17T08:44:23Z","intvolume":"        17","publication":"Clinical Epigenetics","oa_version":"Published Version","file":[{"content_type":"application/pdf","date_created":"2025-02-17T08:44:23Z","access_level":"open_access","relation":"main_file","file_size":1170930,"checksum":"c32511f2d09e6c164116793e784944b8","file_name":"2025_ClinicalEpigenetics_Bernabeu.pdf","creator":"dernst","date_updated":"2025-02-17T08:44:23Z","file_id":"19030","success":1}],"isi":1,"date_updated":"2025-09-30T10:31:08Z","oa":1,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2025","volume":17,"publication_status":"published","OA_place":"publisher","citation":{"apa":"Bernabeu, E., Chybowska, A. D., Kresovich, J. K., Suderman, M., Mccartney, D. L., Hillary, R. F., … Marioni, R. E. (2025). Blood-based epigenome-wide association study and prediction of alcohol consumption. <i>Clinical Epigenetics</i>. Springer Nature. <a href=\"https://doi.org/10.1186/s13148-025-01818-y\">https://doi.org/10.1186/s13148-025-01818-y</a>","chicago":"Bernabeu, Elena, Aleksandra D. Chybowska, Jacob K. Kresovich, Matthew Suderman, Daniel L. Mccartney, Robert F. Hillary, Janie Corley, et al. “Blood-Based Epigenome-Wide Association Study and Prediction of Alcohol Consumption.” <i>Clinical Epigenetics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1186/s13148-025-01818-y\">https://doi.org/10.1186/s13148-025-01818-y</a>.","ieee":"E. Bernabeu <i>et al.</i>, “Blood-based epigenome-wide association study and prediction of alcohol consumption,” <i>Clinical Epigenetics</i>, vol. 17. Springer Nature, 2025.","short":"E. Bernabeu, A.D. Chybowska, J.K. Kresovich, M. Suderman, D.L. Mccartney, R.F. Hillary, J. Corley, M.D.C. Valdés-Hernández, S.M. Maniega, M.E. Bastin, J.M. Wardlaw, Z. Xu, D.P. Sandler, A. Campbell, S.E. Harris, A.M. Mcintosh, J.A. Taylor, P. Yousefi, S.R. Cox, K.L. Evans, M.R. Robinson, C.A. Vallejos, R.E. Marioni, Clinical Epigenetics 17 (2025).","ista":"Bernabeu E, Chybowska AD, Kresovich JK, Suderman M, Mccartney DL, Hillary RF, Corley J, Valdés-Hernández MDC, Maniega SM, Bastin ME, Wardlaw JM, Xu Z, Sandler DP, Campbell A, Harris SE, Mcintosh AM, Taylor JA, Yousefi P, Cox SR, Evans KL, Robinson MR, Vallejos CA, Marioni RE. 2025. Blood-based epigenome-wide association study and prediction of alcohol consumption. Clinical Epigenetics. 17, 14.","mla":"Bernabeu, Elena, et al. “Blood-Based Epigenome-Wide Association Study and Prediction of Alcohol Consumption.” <i>Clinical Epigenetics</i>, vol. 17, 14, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1186/s13148-025-01818-y\">10.1186/s13148-025-01818-y</a>.","ama":"Bernabeu E, Chybowska AD, Kresovich JK, et al. Blood-based epigenome-wide association study and prediction of alcohol consumption. <i>Clinical Epigenetics</i>. 2025;17. doi:<a href=\"https://doi.org/10.1186/s13148-025-01818-y\">10.1186/s13148-025-01818-y</a>"},"OA_type":"gold","doi":"10.1186/s13148-025-01818-y","status":"public","publisher":"Springer Nature","project":[{"_id":"9B8D11D6-BA93-11EA-9121-9846C619BF3A","grant_number":"PCEGP3_181181","name":"Improving estimation and prediction of common complex disease risk"}],"quality_controlled":"1","title":"Blood-based epigenome-wide association study and prediction of alcohol consumption","abstract":[{"text":"Alcohol consumption is an important risk factor for multiple diseases. It is typically assessed via self-report, which is open to measurement error through recall bias. Instead, molecular data such as blood-based DNA methylation (DNAm) could be used to derive a more objective measure of alcohol consumption by incorporating information from cytosine-phosphate-guanine (CpG) sites known to be linked to the trait. Here, we explore the epigenetic architecture of self-reported weekly units of alcohol consumption in the Generation Scotland study. We first create a blood-based epigenetic score (EpiScore) of alcohol consumption using elastic net penalized linear regression. We explore the effect of pre-filtering for CpG features ahead of elastic net, as well as differential patterns by sex and by units consumed in the last week relative to an average week. The final EpiScore was trained on 16,717 individuals and tested in four external cohorts: the Lothian Birth Cohorts (LBC) of 1921 and 1936, the Sister Study, and the Avon Longitudinal Study of Parents and Children (total N across studies > 10,000). The maximum Pearson correlation between the EpiScore and self-reported alcohol consumption within cohort ranged from 0.41 to 0.53. In LBC1936, higher EpiScore levels had significant associations with poorer global brain imaging metrics, whereas self-reported alcohol consumption did not. Finally, we identified two novel CpG loci via a Bayesian penalized regression epigenome-wide association study of alcohol consumption. Together, these findings show how DNAm can objectively characterize patterns of alcohol consumption that associate with brain health, unlike self-reported estimates.","lang":"eng"}],"acknowledgement":"Generation Scotland: Generation Scotland received core support from the Chief Scientist Office of the Scottish Government Health Directorates (CZD/16/6) and the Scottish Funding Council (HR03006). Genotyping and DNA methylation profiling of the Generation Scotland samples were carried out by the Genetics Core Laboratory at the Edinburgh Clinical Research Facility, Edinburgh, Scotland, and were funded by the Medical Research Council UK and the Wellcome Trust (Wellcome Trust Strategic Award STratifying Resilience and Depression Longitudinally (STRADL; Reference 104036/Z/14/Z) and 220857/Z/20/Z. The DNA methylation data assayed for Generation Scotland were partially funded by a 2018 NARSAD Young Investigator Grant from the Brain & Behavior Research Foundation (Ref: 27404; awardee: Dr David M Howard) and by a JMAS SIM fellowship from the Royal College of Physicians of Edinburgh (Awardee: Dr Heather C Whalley). Lothian Birth Cohorts: We thank the LBC1921 and LBC1936 participants and team members who contributed to these studies. The LBC1921 was supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC), The Royal Society, and The Chief Scientist Office of the Scottish Government. The LBC1936 is supported by the BBSRC, and the Economic and Social Research Council [BB/W008793/1] (which supports S.E.H.), Age UK (Disconnected Mind project), the Milton Damerel Trust, the Medical Research Council (MR/M01311/1), and the University of Edinburgh. Methylation typing of LBC1936 was supported by the Centre for Cognitive Ageing and Cognitive Epidemiology (Pilot Fund award), Age UK, The Wellcome Trust Institutional Strategic Support Fund, The University of Edinburgh, and The University of Queensland. Genotyping was funded by the BBSRC (BB/F019394/1). S.R.C. is supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant Number 221890/Z/20/Z). ALSPAC: The UK Medical Research Council and Wellcome (Grant ref: 217065/Z/19/Z) and the University of Bristol provide core support for ALSPAC. This publication is the work of the authors and Matthew Suderman will serve as guarantors for the contents of this paper. A comprehensive list of grants funding is available on the ALSPAC website (http://www.bristol.ac.uk/alspac/external/documents/grant-acknowledgements.pdf). Funding for ALSPAC DNAm measurements was supported by the Wellcome (102215/2/13/2); the University of Bristol; the UK Economic and Social Research Council (ES/N000498/1); the UK Medical Research Council (MC_UU_12013/1, MC_UU_12013/2); and the John Templeton Foundation (60828). MS and PY work within the MRC Integrative Epidemiology Unit at the University of Bristol, which is supported by the Medical Research Council (MC_UU_00011/5). Sister Study: This research was supported by the Intramural Research Program of the National Institutes of Health (Z01-ES049033, Z01-ES049032, Z01-ES044005). A.D.C. was supported by a Medical Research Council PhD Studentship in Precision Medicine with funding from the Medical Research Council Doctoral Training Program and the University of Edinburgh College of Medicine and Veterinary Medicine. R.F.H is supported by an MRC IEU Fellowship. M.R.R. was funded by Swiss National Science Foundation Eccellenza Grant PCEGP3-181181 and by core funding from the Institute of Science and Technology Austria. E.B. and R.E.M. are supported by Alzheimer’s Society major project grant AS-PG-19b-010. This research was funded in whole, or in part, by the Wellcome Trust (104036/Z/14/Z, 220857/Z/20/Z, and 221890/Z/20/Z). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission."},{"oa":1,"file":[{"creator":"dernst","file_name":"2025_JourColloidScie_Scacchi.pdf","date_updated":"2025-08-05T12:07:24Z","file_id":"20128","success":1,"content_type":"application/pdf","date_created":"2025-08-05T12:07:24Z","access_level":"open_access","relation":"main_file","checksum":"a52b72a243a717d85c348f53898ad934","file_size":4212615}],"isi":1,"date_updated":"2025-09-30T10:31:45Z","related_material":{"record":[{"id":"19033","status":"public","relation":"research_data"}]},"intvolume":"       686","file_date_updated":"2025-08-05T12:07:24Z","oa_version":"Published Version","publication":"Journal of Colloid and Interface Science","month":"05","_id":"19024","article_type":"original","department":[{"_id":"RaKl"}],"date_created":"2025-02-16T23:02:33Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"A coarse-grained model for aqueous two-phase systems: Application to ferrofluids","abstract":[{"lang":"eng","text":"Aqueous two-phase systems (ATPSs), phase-separating solutions of water soluble but mutually immiscible molecular species, offer fascinating prospects for selective partitioning, purification, and extraction. Here, we formulate a general Brownian dynamics based coarse-grained simulation model for an ATPS of two water soluble but mutually immiscible polymer species. Including additional solute species into the model is straightforward, which enables capturing the assembly and partitioning response of, e.g., nanoparticles (NPs), additional macromolecular species, or impurities in the ATPS. We demonstrate that the simulation model captures satisfactorily the phase separation, partitioning, and interfacial properties of an actual ATPS using a model ATPS in which a polymer mixture of dextran and polyethylene glycol (PEG) phase separates, and magnetic NPs selectively partition into one of the two polymeric phases. Phase separation and NP partitioning are characterized both via the computational model and experimentally, under different conditions. The simulation model captures the trends observed in the experimental system and quantitatively links the partitioning behavior to the component species interactions. Finally, the simulation model reveals that the ATPS interface fluctuations in systems with magnetic NPs as a partitioned species can be controlled by the magnetic field at length scales much smaller than those probed experimentally to date."}],"acknowledgement":"This work was supported by the Swiss National Science Foundation under the project no. P500PT_206916 (A.S.) and the Academy of Finland through its Centres of Excellence Programs (2022-2029, LIBER) under projects no. 346111 and 364205 (M.S.) and 346112 and 364206 (J.T.). MPH was supported by the National Science Foundation through the Princeton University (PCCM) Materials Research Science and Engineering Center DMR-2011750. A.S. warmly thanks Bob Evans for extensive scientific discussions and for his hospitality during the research visit in Bristol. Computational resources by CSC IT Centre for Finland, the Aalto Science-IT project, and RAMI – RawMatters Finland Infrastructure are also gratefully acknowledged.","publisher":"Elsevier","status":"public","quality_controlled":"1","OA_type":"hybrid","doi":"10.1016/j.jcis.2025.01.256","volume":686,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2025","publication_status":"published","OA_place":"publisher","citation":{"ista":"Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. 2025. A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. Journal of Colloid and Interface Science. 686, 1135–1146.","mla":"Scacchi, Alberto, et al. “A Coarse-Grained Model for Aqueous Two-Phase Systems: Application to Ferrofluids.” <i>Journal of Colloid and Interface Science</i>, vol. 686, Elsevier, 2025, pp. 1135–46, doi:<a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">10.1016/j.jcis.2025.01.256</a>.","ama":"Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. <i>Journal of Colloid and Interface Science</i>. 2025;686:1135-1146. doi:<a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">10.1016/j.jcis.2025.01.256</a>","apa":"Scacchi, A., Rigoni, C., Haataja, M., Timonen, J. V. I., &#38; Sammalkorpi, M. (2025). A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. <i>Journal of Colloid and Interface Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">https://doi.org/10.1016/j.jcis.2025.01.256</a>","chicago":"Scacchi, Alberto, Carlo Rigoni, Mikko Haataja, Jaakko V.I. Timonen, and Maria Sammalkorpi. “A Coarse-Grained Model for Aqueous Two-Phase Systems: Application to Ferrofluids.” <i>Journal of Colloid and Interface Science</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">https://doi.org/10.1016/j.jcis.2025.01.256</a>.","ieee":"A. Scacchi, C. Rigoni, M. Haataja, J. V. I. Timonen, and M. Sammalkorpi, “A coarse-grained model for aqueous two-phase systems: Application to ferrofluids,” <i>Journal of Colloid and Interface Science</i>, vol. 686. Elsevier, pp. 1135–1146, 2025.","short":"A. Scacchi, C. Rigoni, M. Haataja, J.V.I. Timonen, M. Sammalkorpi, Journal of Colloid and Interface Science 686 (2025) 1135–1146."},"language":[{"iso":"eng"}],"arxiv":1,"date_published":"2025-05-15T00:00:00Z","pmid":1,"external_id":{"pmid":["39933351"],"arxiv":["2311.16906"],"isi":["001426125300001"]},"fulldoi":"https://doi.org/10.1016/j.jcis.2025.01.256","ddc":["540"],"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","PlanS_conform":"1","type":"journal_article","day":"15","author":[{"last_name":"Scacchi","first_name":"Alberto","full_name":"Scacchi, Alberto"},{"last_name":"Rigoni","full_name":"Rigoni, Carlo","first_name":"Carlo","id":"c5df3b62-5f9e-11ef-ba3c-b97f5b5b5ef0"},{"last_name":"Haataja","full_name":"Haataja, Mikko","first_name":"Mikko"},{"full_name":"Timonen, Jaakko V.I.","first_name":"Jaakko V.I.","last_name":"Timonen"},{"last_name":"Sammalkorpi","full_name":"Sammalkorpi, Maria","first_name":"Maria"}],"publication_identifier":{"issnl":["0021-9797"],"issn":["0021-9797"],"eissn":["1095-7103"]},"scopus_import":"1","page":"1135-1146"},{"has_accepted_license":"1","ddc":["510"],"fulldoi":"https://doi.org/10.1137/23M1617345","language":[{"iso":"eng"}],"date_published":"2025-02-01T00:00:00Z","external_id":{"isi":["001447583400011"],"arxiv":["2311.08872"]},"arxiv":1,"scopus_import":"1","publication_identifier":{"eissn":["1095-7170"],"issn":["0036-1429"]},"author":[{"orcid":"0000-0002-6269-5149","last_name":"Cornalba","full_name":"Cornalba, Federico","first_name":"Federico","id":"2CEB641C-A400-11E9-A717-D712E6697425"},{"first_name":"Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","full_name":"Fischer, Julian L","last_name":"Fischer","orcid":"0000-0002-0479-558X"}],"corr_author":"1","page":"262-287","type":"journal_article","article_processing_charge":"Yes (in subscription journal)","day":"01","_id":"19027","month":"02","date_created":"2025-02-16T23:02:34Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"JuFi"}],"article_type":"original","date_updated":"2025-09-30T10:30:31Z","file":[{"date_updated":"2025-02-17T08:32:23Z","file_id":"19029","success":1,"creator":"dernst","file_name":"2025_SIAMNumerAnaly_Cornalba.pdf","file_size":2435019,"checksum":"53505647e848ed50f7e0d00c369b14e7","relation":"main_file","access_level":"open_access","content_type":"application/pdf","date_created":"2025-02-17T08:32:23Z"}],"isi":1,"oa":1,"oa_version":"Published Version","publication":"SIAM Journal on Numerical Analysis","file_date_updated":"2025-02-17T08:32:23Z","intvolume":"        63","doi":"10.1137/23M1617345","OA_type":"hybrid","publication_status":"published","citation":{"apa":"Cornalba, F., &#38; Fischer, J. L. (2025). Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/23M1617345\">https://doi.org/10.1137/23M1617345</a>","chicago":"Cornalba, Federico, and Julian L Fischer. “Multilevel Monte Carlo Methods for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial and Applied Mathematics, 2025. <a href=\"https://doi.org/10.1137/23M1617345\">https://doi.org/10.1137/23M1617345</a>.","ieee":"F. Cornalba and J. L. Fischer, “Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics,” <i>SIAM Journal on Numerical Analysis</i>, vol. 63, no. 1. Society for Industrial and Applied Mathematics, pp. 262–287, 2025.","short":"F. Cornalba, J.L. Fischer, SIAM Journal on Numerical Analysis 63 (2025) 262–287.","ista":"Cornalba F, Fischer JL. 2025. Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. SIAM Journal on Numerical Analysis. 63(1), 262–287.","mla":"Cornalba, Federico, and Julian L. Fischer. “Multilevel Monte Carlo Methods for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” <i>SIAM Journal on Numerical Analysis</i>, vol. 63, no. 1, Society for Industrial and Applied Mathematics, 2025, pp. 262–87, doi:<a href=\"https://doi.org/10.1137/23M1617345\">10.1137/23M1617345</a>.","ama":"Cornalba F, Fischer JL. Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. <i>SIAM Journal on Numerical Analysis</i>. 2025;63(1):262-287. doi:<a href=\"https://doi.org/10.1137/23M1617345\">10.1137/23M1617345</a>"},"OA_place":"publisher","year":"2025","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":63,"acknowledgement":"The work of the authors was supported by the Austrian Science Fund (FWF) projectF65.","abstract":[{"text":"Stochastic PDEs of fluctuating hydrodynamics are a powerful tool for the description of fluctuations in many-particle systems. In this paper, we develop and analyze a multilevel Monte Carlo (MLMC) scheme for the Dean–Kawasaki equation, a pivotal representative of this class of SPDEs. We prove analytically and demonstrate numerically that our MLMC scheme provides a significant reduction in computational cost (with respect to a standard Monte Carlo method) in the simulation of the Dean–Kawasaki equation. Specifically, we link this reduction in cost to having a sufficiently large average particle density and show that sizeable cost reductions can be obtained even when we have solutions with regions of low density. Numerical simulations are provided in the two-dimensional case, confirming our theoretical predictions. Our results are formulated entirely in terms of the law of distributions rather than in terms of strong spatial norms: this crucially allows for MLMC speed-ups altogether despite the Dean–Kawasaki equation being highly singular.","lang":"eng"}],"title":"Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics","quality_controlled":"1","status":"public","issue":"1","project":[{"grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems"}],"publisher":"Society for Industrial and Applied Mathematics"},{"oa_version":"Published Version","date_published":"2025-02-05T00:00:00Z","related_material":{"record":[{"status":"public","id":"19024","relation":"used_in_publication"}]},"date_updated":"2025-09-30T10:31:44Z","oa":1,"date_created":"2025-02-17T09:00:36Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"RaKl"}],"_id":"19033","has_accepted_license":"1","ddc":["530"],"month":"02","fulldoi":"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1","status":"public","day":"05","publisher":"Fairdata","type":"research_data_reference","acknowledgement":"This work was supported by the Swiss National Science Foundation under the project no. P500PT_206916 (A.S.) and the Academy of Finland through its Centres of Excellence Programs (2022-2029, LIBER) under projects no. 346111 and 364205 (M.S.) and 346112 and 364206 (J.T.). MPH was supported by the National Science Foundation through the Princeton University (PCCM) Materials Research Science and Engineering Center DMR-2011750. A.S. warmly thanks Bob Evans for extensive scientific discussions and for his hospitality during the research visit in Bristol. Computational resources by CSC IT Centre for Finland, the Aalto Science-IT project, and RAMI -- RawMatters Finland Infrastructure are also gratefully acknowledged.","contributor":[{"first_name":"Carlo","id":"c5df3b62-5f9e-11ef-ba3c-b97f5b5b5ef0","last_name":"Rigoni"},{"first_name":"Maria","last_name":"Sammalkorpi"},{"last_name":"Haataja","first_name":"Mikko"},{"last_name":"Timonen","first_name":"Jaakoo"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"This data set contains the simulation input files, scripts, and figures data belonging to the publication\r\n\r\nAlberto Scacchi, Carlo Rigoni, Mikko P. Haataja, Jakko V. I. Timonen, and Maria Sammalkorpi, \"A Coarse-grained Model for Aqueous Two-phase Systems: Application to Ferrofluids\", Journal of Colloids and Interface Science (2025). https://doi.org/10.1016/j.jcis.2025.01.256."}],"title":"2025_SCACCHI_JCIS","citation":{"mla":"Scacchi, Alberto. <i>2025_SCACCHI_JCIS</i>. Fairdata, 2025, doi:<a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","ama":"Scacchi A. 2025_SCACCHI_JCIS. 2025. doi:<a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>","ista":"Scacchi A. 2025. 2025_SCACCHI_JCIS, Fairdata, <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","ieee":"A. Scacchi, “2025_SCACCHI_JCIS.” Fairdata, 2025.","short":"A. Scacchi, (2025).","apa":"Scacchi, A. (2025). 2025_SCACCHI_JCIS. Fairdata. <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>","chicago":"Scacchi, Alberto. “2025_SCACCHI_JCIS.” Fairdata, 2025. <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>."},"OA_place":"publisher","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2025","main_file_link":[{"open_access":"1","url":"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1"}],"doi":"10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1","author":[{"full_name":"Scacchi, Alberto","first_name":"Alberto","last_name":"Scacchi"}]},{"quality_controlled":"1","publisher":"Elsevier","status":"public","acknowledgement":"M.M.N.H. and M.H. acknowledge financial support from SNSF grant number 200727. M.H. and S.B. acknowledge financial support from the DFG priority program SPP 1881 Turbulent Superstructures under Grant No. HO5519/1-2.","abstract":[{"lang":"eng","text":"Lagrangian coherent structures (LCSs) are widely recognized as playing a significant role in turbulence dynamics since they can control the transport of mass, momentum or heat. However, the methods used to identify these structures are often based on ambiguous definitions and arbitrary thresholding. While LCSs theory provides precise and frame-indifferent mathematical definitions of coherent structures, some of the commonly used extraction algorithms employed in the literature are still case-specific and involve user-defined parameters. In this study, we present a new, unsupervised extraction algorithm that enables the extraction of rotational LCSs based on Lagrangian average vorticity deviation from an arbitrary 3D velocity field. The algorithm utilizes two alternative methods for the identification of the LCS core (ridge): an unsupervised clustering method and a streamline-based method. In a subsequent step, the ridge curve is parametrized through a pruning procedure of minimum spanning tree graphs. To assess the effectiveness of the algorithm, we test it on two cases: (i) direct numerical simulations of forced homogeneous and isotropic turbulence and (ii) three-dimensional Particle Tracking Velocimetry experiments of a turbulent gravity current."}],"title":"Unsupervised extraction of rotational Lagrangian coherent structures","citation":{"short":"M.M. Neamtu-Halic, S. Brizzolara, G. Haller, M. Holzner, Computers &#38; Fluids 290 (2025).","ieee":"M. M. Neamtu-Halic, S. Brizzolara, G. Haller, and M. Holzner, “Unsupervised extraction of rotational Lagrangian coherent structures,” <i>Computers &#38; Fluids</i>, vol. 290. Elsevier, 2025.","chicago":"Neamtu-Halic, Marius M., Stefano Brizzolara, George Haller, and Markus Holzner. “Unsupervised Extraction of Rotational Lagrangian Coherent Structures.” <i>Computers &#38; Fluids</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">https://doi.org/10.1016/j.compfluid.2025.106558</a>.","apa":"Neamtu-Halic, M. M., Brizzolara, S., Haller, G., &#38; Holzner, M. (2025). Unsupervised extraction of rotational Lagrangian coherent structures. <i>Computers &#38; Fluids</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">https://doi.org/10.1016/j.compfluid.2025.106558</a>","ama":"Neamtu-Halic MM, Brizzolara S, Haller G, Holzner M. Unsupervised extraction of rotational Lagrangian coherent structures. <i>Computers &#38; Fluids</i>. 2025;290. doi:<a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">10.1016/j.compfluid.2025.106558</a>","mla":"Neamtu-Halic, Marius M., et al. “Unsupervised Extraction of Rotational Lagrangian Coherent Structures.” <i>Computers &#38; Fluids</i>, vol. 290, 106558, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">10.1016/j.compfluid.2025.106558</a>.","ista":"Neamtu-Halic MM, Brizzolara S, Haller G, Holzner M. 2025. Unsupervised extraction of rotational Lagrangian coherent structures. Computers &#38; Fluids. 290, 106558."},"publication_status":"published","volume":290,"year":"2025","doi":"10.1016/j.compfluid.2025.106558","OA_type":"closed access","publication":"Computers & Fluids","oa_version":"None","intvolume":"       290","related_material":{"link":[{"relation":"software","url":"https://github.com/NeamtuMarius/Unsupervised-3D-LAVD-Extraction-Algorithm"}]},"date_updated":"2025-09-30T10:34:32Z","isi":1,"date_created":"2025-02-17T09:18:41Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_type":"original","department":[{"_id":"BjHo"}],"_id":"19035","month":"03","day":"01","type":"journal_article","article_processing_charge":"No","article_number":"106558","scopus_import":"1","publication_identifier":{"issn":["0045-7930"]},"author":[{"full_name":"Neamtu-Halic, Marius M.","first_name":"Marius M.","last_name":"Neamtu-Halic"},{"last_name":"Brizzolara","full_name":"Brizzolara, Stefano","first_name":"Stefano","id":"4bbe33b8-c59a-11ee-a1af-fa33d1ac42c4"},{"last_name":"Haller","first_name":"George","full_name":"Haller, George"},{"last_name":"Holzner","full_name":"Holzner, Markus","first_name":"Markus"}],"external_id":{"isi":["001423607400001"]},"date_published":"2025-03-01T00:00:00Z","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1016/j.compfluid.2025.106558"},{"publisher":"National Academy of Sciences","status":"public","issue":"4","quality_controlled":"1","title":"Layer-specific control of inhibition by NDNF interneurons","abstract":[{"lang":"eng","text":"Neuronal processing of external sensory input is shaped by internally generated top–down information. In the neocortex, top–down projections primarily target layer 1, which contains NDNF (neuron-derived neurotrophic factor)-expressing interneurons and the dendrites of pyramidal cells. Here, we investigate the hypothesis that NDNF interneurons shape cortical computations in an unconventional, layer-specific way, by exerting presynaptic inhibition on synapses in layer 1 while leaving synapses in deeper layers unaffected. We first confirm experimentally that in the auditory cortex, synapses from somatostatin-expressing (SOM) onto NDNF neurons are indeed modulated by ambient Gamma-aminobutyric acid (GABA). Shifting to a computational model, we then show that this mechanism introduces a distinct mutual inhibition motif between NDNF interneurons and the synaptic outputs of SOM interneurons. This motif can control inhibition in a layer-specific way and introduces competition between NDNF and SOM interneurons for dendritic inhibition onto pyramidal cells on different timescales. NDNF interneurons can thereby control cortical information flow by redistributing dendritic inhibition from fast to slow timescales and by gating different sources of dendritic inhibition."}],"acknowledgement":"We thank all members of the Letzkus lab, the Sprekeler lab, and the Vogels lab for discussions, U. Thirimanna for technical assistance, and K. Deisseroth for generously sharing reagents. This work was supported by the German Research Foundation (LE 3804/3-1, LE 3804/4-1, LE 3804/7-1, CRC-TRR 384/1 2024, - 514483642, and 460088091) and the Wellcome Trust Senior Research Fellowship 214316/Z/18/Z.\r\nElectrophysiological recordings, source code for simulations, and data analysis have been deposited in GitHub (https://github.com/LNaumann/NDNF_control_inhibition_Naumann25) (62).","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"volume":122,"year":"2025","OA_place":"publisher","citation":{"ieee":"L. B. Naumann, L. Hertäg, J. Müller, J. J. Letzkus, and H. Sprekeler, “Layer-specific control of inhibition by NDNF interneurons,” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 4. National Academy of Sciences, 2025.","short":"L.B. Naumann, L. Hertäg, J. Müller, J.J. Letzkus, H. Sprekeler, Proceedings of the National Academy of Sciences 122 (2025).","apa":"Naumann, L. B., Hertäg, L., Müller, J., Letzkus, J. J., &#38; Sprekeler, H. (2025). Layer-specific control of inhibition by NDNF interneurons. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2408966122\">https://doi.org/10.1073/pnas.2408966122</a>","chicago":"Naumann, Laura B, Loreen Hertäg, Jennifer Müller, Johannes J. Letzkus, and Henning Sprekeler. “Layer-Specific Control of Inhibition by NDNF Interneurons.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2025. <a href=\"https://doi.org/10.1073/pnas.2408966122\">https://doi.org/10.1073/pnas.2408966122</a>.","mla":"Naumann, Laura B., et al. “Layer-Specific Control of Inhibition by NDNF Interneurons.” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 4, e2408966122, National Academy of Sciences, 2025, doi:<a href=\"https://doi.org/10.1073/pnas.2408966122\">10.1073/pnas.2408966122</a>.","ama":"Naumann LB, Hertäg L, Müller J, Letzkus JJ, Sprekeler H. Layer-specific control of inhibition by NDNF interneurons. <i>Proceedings of the National Academy of Sciences</i>. 2025;122(4). doi:<a href=\"https://doi.org/10.1073/pnas.2408966122\">10.1073/pnas.2408966122</a>","ista":"Naumann LB, Hertäg L, Müller J, Letzkus JJ, Sprekeler H. 2025. Layer-specific control of inhibition by NDNF interneurons. Proceedings of the National Academy of Sciences. 122(4), e2408966122."},"publication_status":"published","OA_type":"hybrid","doi":"10.1073/pnas.2408966122","intvolume":"       122","file_date_updated":"2025-02-17T14:46:18Z","publication":"Proceedings of the National Academy of Sciences","oa_version":"Published Version","oa":1,"file":[{"access_level":"open_access","content_type":"application/pdf","date_created":"2025-02-17T14:46:18Z","checksum":"636d5130724e3236ebf4fc658b3945fe","file_size":13726531,"relation":"main_file","creator":"dernst","file_name":"2025_PNAS_Naumann.pdf","file_id":"19046","date_updated":"2025-02-17T14:46:18Z","success":1}],"isi":1,"date_updated":"2026-02-16T12:28:02Z","related_material":{"link":[{"relation":"software","url":"https://github.com/LNaumann/NDNF_control_inhibition_Naumann25"}]},"article_type":"original","department":[{"_id":"TiVo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2025-02-17T09:20:19Z","month":"01","_id":"19036","day":"22","article_processing_charge":"Yes (in subscription journal)","type":"journal_article","article_number":"e2408966122","author":[{"first_name":"Laura B","id":"81a3b706-8972-11ed-ae7b-8eff728700ca","full_name":"Naumann, Laura B","last_name":"Naumann"},{"full_name":"Hertäg, Loreen","first_name":"Loreen","last_name":"Hertäg"},{"full_name":"Müller, Jennifer","first_name":"Jennifer","last_name":"Müller"},{"full_name":"Letzkus, Johannes J.","first_name":"Johannes J.","last_name":"Letzkus"},{"full_name":"Sprekeler, Henning","first_name":"Henning","last_name":"Sprekeler"}],"publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"scopus_import":"1","pmid":1,"external_id":{"pmid":["39841147"],"isi":["001422380500004"]},"date_published":"2025-01-22T00:00:00Z","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1073/pnas.2408966122","ddc":["570"],"has_accepted_license":"1"},{"department":[{"_id":"MaIb"}],"article_type":"original","date_created":"2025-02-17T09:22:26Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04","_id":"19037","file_date_updated":"2025-12-30T07:59:13Z","intvolume":"        25","oa_version":"Published Version","publication":"IEEE Sensors Journal","date_updated":"2026-02-16T11:50:01Z","file":[{"date_updated":"2025-12-30T07:59:13Z","file_id":"20887","success":1,"file_name":"2025_IEEESensor_Hasler.pdf","creator":"dernst","relation":"main_file","file_size":2214584,"checksum":"9cdd4017025a3add6198ed84798319e8","content_type":"application/pdf","date_created":"2025-12-30T07:59:13Z","access_level":"open_access"}],"isi":1,"oa":1,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2025","volume":25,"publication_status":"published","OA_place":"publisher","citation":{"mla":"Hasler, Roger, et al. “Dual Electronic and Optical Monitoring of Biointerfaces by a Grating-Structured Coplanar-Gated Field-Effect Transistor.” <i>IEEE Sensors Journal</i>, vol. 25, no. 7, IEEE, 2025, pp. 10521–29, doi:<a href=\"https://doi.org/10.1109/jsen.2025.3533113\">10.1109/jsen.2025.3533113</a>.","ama":"Hasler R, Livio PA, Bozdogan A, et al. Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor. <i>IEEE Sensors Journal</i>. 2025;25(7):10521-10529. doi:<a href=\"https://doi.org/10.1109/jsen.2025.3533113\">10.1109/jsen.2025.3533113</a>","ista":"Hasler R, Livio PA, Bozdogan A, Fossati S, Hageneder S, Montes-García V, Movilli J, Moazzenzade T, Loohuis L, Reiner-Rozman C, Tamayo A, Fiedler C, Ibáñez M, Kleber C, Huskens J, Dostalek J, Samorì P, Knoll W. 2025. Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor. IEEE Sensors Journal. 25(7), 10521–10529.","ieee":"R. Hasler <i>et al.</i>, “Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor,” <i>IEEE Sensors Journal</i>, vol. 25, no. 7. IEEE, pp. 10521–10529, 2025.","short":"R. Hasler, P.A. Livio, A. Bozdogan, S. Fossati, S. Hageneder, V. Montes-García, J. Movilli, T. Moazzenzade, L. Loohuis, C. Reiner-Rozman, A. Tamayo, C. Fiedler, M. Ibáñez, C. Kleber, J. Huskens, J. Dostalek, P. Samorì, W. Knoll, IEEE Sensors Journal 25 (2025) 10521–10529.","apa":"Hasler, R., Livio, P. A., Bozdogan, A., Fossati, S., Hageneder, S., Montes-García, V., … Knoll, W. (2025). Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor. <i>IEEE Sensors Journal</i>. IEEE. <a href=\"https://doi.org/10.1109/jsen.2025.3533113\">https://doi.org/10.1109/jsen.2025.3533113</a>","chicago":"Hasler, Roger, Pietro A. Livio, Anil Bozdogan, Stefan Fossati, Simone Hageneder, Verónica Montes-García, Jacopo Movilli, et al. “Dual Electronic and Optical Monitoring of Biointerfaces by a Grating-Structured Coplanar-Gated Field-Effect Transistor.” <i>IEEE Sensors Journal</i>. IEEE, 2025. <a href=\"https://doi.org/10.1109/jsen.2025.3533113\">https://doi.org/10.1109/jsen.2025.3533113</a>."},"OA_type":"hybrid","doi":"10.1109/jsen.2025.3533113","issue":"7","status":"public","publisher":"IEEE","quality_controlled":"1","abstract":[{"text":"We present a novel, portable sensor platform that enables concurrent monitoring of surface mass and charge density variations at thin biointerfaces. This platform combines a coplanar-gated field-effect transistor (FET) architecture with grating-coupled surface plasmon resonance (SPR), yielding an integrated disposable sensor chip prepared by nanoimprint and maskless photolithography techniques. The sensor chip design is suitable for scalable production and relies on reduced graphene oxide (rGO), serving as the FET’s semiconductor material for the electronic readout, and a metallic gate electrode surface that is corrugated with a multi-diffractive structure for optical probing with resonantly excited surface plasmons. Together with its integration in a compact instrumentation this results in a form factor optimized solution for dual-mode investigations without compromising the optical or electronic sensor performance. A poly-L-lysine (PLL) – based thin linker layer was deployed at the sensor surface to covalently attach azide-conjugated biomolecules by using incorporated “clickable” dibenzocyclooctyne (DBCO) moieties. Interestingly, the dual-mode measurements allow elucidating the role of the globular nature of the PLL chains when increasing the density of DBCO attached to their backbone, leading to PLL folding and internalization of DBCO moieties, and thus reducing the coupling yield for the used DNA oligomers. We envision that this platform can be employed to studying a range of other biointerface architectures and biomolecular interaction phenomena, which are inherently tied to mass and charge density variations.","lang":"eng"}],"title":"Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor","acknowledgement":"We thank the Electron Microscopy Facility at ISTA for their support with sputter coating the FO probes and NOSI GmbH for their support with 3D printing.","ddc":["540"],"fulldoi":"https://doi.org/10.1109/jsen.2025.3533113","has_accepted_license":"1","external_id":{"isi":["001457747000001"]},"date_published":"2025-04-01T00:00:00Z","language":[{"iso":"eng"}],"page":"10521-10529","author":[{"full_name":"Hasler, Roger","first_name":"Roger","last_name":"Hasler"},{"full_name":"Livio, Pietro A.","first_name":"Pietro A.","last_name":"Livio"},{"last_name":"Bozdogan","first_name":"Anil","full_name":"Bozdogan, Anil"},{"full_name":"Fossati, Stefan","first_name":"Stefan","last_name":"Fossati"},{"full_name":"Hageneder, Simone","first_name":"Simone","last_name":"Hageneder"},{"first_name":"Verónica","full_name":"Montes-García, Verónica","last_name":"Montes-García"},{"last_name":"Movilli","first_name":"Jacopo","full_name":"Movilli, Jacopo"},{"last_name":"Moazzenzade","full_name":"Moazzenzade, Taghi","first_name":"Taghi"},{"last_name":"Loohuis","first_name":"Luna","full_name":"Loohuis, Luna"},{"last_name":"Reiner-Rozman","first_name":"Ciril","full_name":"Reiner-Rozman, Ciril"},{"full_name":"Tamayo, Adrián","first_name":"Adrián","last_name":"Tamayo"},{"full_name":"Fiedler, Christine","first_name":"Christine","id":"bd3fceba-dc74-11ea-a0a7-c17f71817366","last_name":"Fiedler"},{"orcid":"0000-0001-5013-2843","last_name":"Ibáñez","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"},{"first_name":"Christoph","full_name":"Kleber, Christoph","last_name":"Kleber"},{"last_name":"Huskens","first_name":"Jurriaan","full_name":"Huskens, Jurriaan"},{"last_name":"Dostalek","full_name":"Dostalek, Jakub","first_name":"Jakub"},{"last_name":"Samorì","first_name":"Paolo","full_name":"Samorì, Paolo"},{"last_name":"Knoll","full_name":"Knoll, Wolfgang","first_name":"Wolfgang"}],"publication_identifier":{"eissn":["1558-1748"],"issn":["1530-437X"]},"scopus_import":"1","day":"01","PlanS_conform":"1","acknowledged_ssus":[{"_id":"EM-Fac"}],"article_processing_charge":"Yes (in subscription journal)","type":"journal_article"}]