---
OA_place: publisher
OA_type: hybrid
_id: '17049'
abstract:
- lang: eng
text: We consider large non-Hermitian NxN matrices with an additive independent,
identically distributed (i.i.d.) noise for each matrix elements. We show that
already a small noise of variance 1/N completely thermalises the bulk singular
vectors, in particular they satisfy the strong form of Quantum Unique Ergodicity
(QUE) with an optimal speed of convergence. In physics terms, we thus extend the
Eigenstate Thermalisation Hypothesis, formulated originally by Deutsch [34] and
proven for Wigner matrices in [23], to arbitrary non-Hermitian matrices with an
i.i.d. noise. As a consequence we obtain an optimal lower bound on the diagonal
overlaps of the corresponding non-Hermitian eigenvectors. This quantity, also
known as the (square of the) eigenvalue condition number measuring the sensitivity
of the eigenvalue to small perturbations, has notoriously escaped rigorous treatment
beyond the explicitly computable Ginibre ensemble apart from the very recent upper
bounds given in [7] and [45]. As a key tool, we develop a new systematic decomposition
of general observables in random matrix theory that governs the size of products
of resolvents with deterministic matrices in between.
acknowledgement: "Supported by ERC Advanced Grant “RMTBeyond” No. 101020331.\r\nSupported
by the SNSF Ambizione Grant PZ00P2_209089."
article_number: '110495'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Giorgio
full_name: Cipolloni, Giorgio
id: 42198EFA-F248-11E8-B48F-1D18A9856A87
last_name: Cipolloni
orcid: 0000-0002-4901-7992
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Sven Joscha
full_name: Henheik, Sven Joscha
id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
last_name: Henheik
orcid: 0000-0003-1106-327X
- first_name: Dominik J
full_name: Schröder, Dominik J
id: 408ED176-F248-11E8-B48F-1D18A9856A87
last_name: Schröder
orcid: 0000-0002-2904-1856
citation:
ama: Cipolloni G, Erdös L, Henheik SJ, Schröder DJ. Optimal lower bound on eigenvector
overlaps for non-Hermitian random matrices. Journal of Functional Analysis.
2024;287(4). doi:10.1016/j.jfa.2024.110495
apa: Cipolloni, G., Erdös, L., Henheik, S. J., & Schröder, D. J. (2024). Optimal
lower bound on eigenvector overlaps for non-Hermitian random matrices. Journal
of Functional Analysis. Elsevier. https://doi.org/10.1016/j.jfa.2024.110495
chicago: Cipolloni, Giorgio, László Erdös, Sven Joscha Henheik, and Dominik J Schröder.
“Optimal Lower Bound on Eigenvector Overlaps for Non-Hermitian Random Matrices.”
Journal of Functional Analysis. Elsevier, 2024. https://doi.org/10.1016/j.jfa.2024.110495.
ieee: G. Cipolloni, L. Erdös, S. J. Henheik, and D. J. Schröder, “Optimal lower
bound on eigenvector overlaps for non-Hermitian random matrices,” Journal of
Functional Analysis, vol. 287, no. 4. Elsevier, 2024.
ista: Cipolloni G, Erdös L, Henheik SJ, Schröder DJ. 2024. Optimal lower bound on
eigenvector overlaps for non-Hermitian random matrices. Journal of Functional
Analysis. 287(4), 110495.
mla: Cipolloni, Giorgio, et al. “Optimal Lower Bound on Eigenvector Overlaps for
Non-Hermitian Random Matrices.” Journal of Functional Analysis, vol. 287,
no. 4, 110495, Elsevier, 2024, doi:10.1016/j.jfa.2024.110495.
short: G. Cipolloni, L. Erdös, S.J. Henheik, D.J. Schröder, Journal of Functional
Analysis 287 (2024).
corr_author: '1'
date_created: 2024-05-26T22:00:57Z
date_published: 2024-08-15T00:00:00Z
date_updated: 2026-04-07T12:37:11Z
day: '15'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1016/j.jfa.2024.110495
ec_funded: 1
external_id:
isi:
- '001325502400001'
file:
- access_level: open_access
checksum: 07d3f73e0c56e68eb110851842c22ee0
content_type: application/pdf
creator: dernst
date_created: 2025-06-24T13:14:21Z
date_updated: 2025-06-24T13:14:21Z
file_id: '19891'
file_name: 2025_JourFunctionalAnalysis_Cipolloni.pdf
file_size: 1374854
relation: main_file
success: 1
file_date_updated: 2025-06-24T13:14:21Z
has_accepted_license: '1'
intvolume: ' 287'
isi: 1
issue: '4'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
publication: Journal of Functional Analysis
publication_identifier:
eissn:
- 1096-0783
issn:
- 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
record:
- id: '19540'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Optimal lower bound on eigenvector overlaps for non-Hermitian random matrices
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 287
year: '2024'
...
---
DOAJ_listed: '1'
_id: '17050'
abstract:
- lang: eng
text: The process of polymer condensation, i.e., the formation of bonds between
reactive end groups, is ubiquitous in both industry and biology. Here we study
generic systems undergoing polymer condensation in competition with cyclization.
Using a generalized Smoluchowski theory, molecular dynamics simulations and experiments
with DNA and ATP-consuming T4 ligase, we find that this system displays a transition,
from a ring-dominated regime with finite-length chains at infinite time to a linear-polymers-dominated
one with chains that keep growing in time. Finally, we show that fluids prepared
close to the transition may have widely different compositions and rheology at
large condensation times.
acknowledgement: D.M. acknowledges the support of the Royal Society via a University
Research Fellowship. This project has received support from the European Research
Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Program
(Grant Agreement No. 947918 to D.M. and No. 677532 to M.L.). The authors acknowledge
insightful discussions with Daan Noordermeer and Antonio Valdes, who also kindly
gifted us with the 1288 plasmid.
article_number: '023189'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Maria
full_name: Panoukidou, Maria
last_name: Panoukidou
- first_name: Simon
full_name: Weir, Simon
last_name: Weir
- first_name: Valerio
full_name: Sorichetti, Valerio
id: ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b
last_name: Sorichetti
orcid: 0000-0002-9645-6576
- first_name: Yair Gutierrez
full_name: Fosado, Yair Gutierrez
last_name: Fosado
- first_name: Martin
full_name: Lenz, Martin
last_name: Lenz
- first_name: Davide
full_name: Michieletto, Davide
last_name: Michieletto
citation:
ama: Panoukidou M, Weir S, Sorichetti V, Fosado YG, Lenz M, Michieletto D. Runaway
transition in irreversible polymer condensation with cyclization. Physical
Review Research. 2024;6(2). doi:10.1103/PhysRevResearch.6.023189
apa: Panoukidou, M., Weir, S., Sorichetti, V., Fosado, Y. G., Lenz, M., & Michieletto,
D. (2024). Runaway transition in irreversible polymer condensation with cyclization.
Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.6.023189
chicago: Panoukidou, Maria, Simon Weir, Valerio Sorichetti, Yair Gutierrez Fosado,
Martin Lenz, and Davide Michieletto. “Runaway Transition in Irreversible Polymer
Condensation with Cyclization.” Physical Review Research. American Physical
Society, 2024. https://doi.org/10.1103/PhysRevResearch.6.023189.
ieee: M. Panoukidou, S. Weir, V. Sorichetti, Y. G. Fosado, M. Lenz, and D. Michieletto,
“Runaway transition in irreversible polymer condensation with cyclization,” Physical
Review Research, vol. 6, no. 2. American Physical Society, 2024.
ista: Panoukidou M, Weir S, Sorichetti V, Fosado YG, Lenz M, Michieletto D. 2024.
Runaway transition in irreversible polymer condensation with cyclization. Physical
Review Research. 6(2), 023189.
mla: Panoukidou, Maria, et al. “Runaway Transition in Irreversible Polymer Condensation
with Cyclization.” Physical Review Research, vol. 6, no. 2, 023189, American
Physical Society, 2024, doi:10.1103/PhysRevResearch.6.023189.
short: M. Panoukidou, S. Weir, V. Sorichetti, Y.G. Fosado, M. Lenz, D. Michieletto,
Physical Review Research 6 (2024).
date_created: 2024-05-26T22:00:58Z
date_published: 2024-05-01T00:00:00Z
date_updated: 2025-05-14T09:32:40Z
day: '01'
ddc:
- '530'
department:
- _id: AnSa
doi: 10.1103/PhysRevResearch.6.023189
external_id:
arxiv:
- '2210.14010'
file:
- access_level: open_access
checksum: 63a962d49ef1e21a3367d265784df14b
content_type: application/pdf
creator: dernst
date_created: 2024-05-27T06:37:01Z
date_updated: 2024-05-27T06:37:01Z
file_id: '17055'
file_name: 2024_PhysicalReviewResearch_Panoukidou.pdf
file_size: 1409416
relation: main_file
success: 1
file_date_updated: 2024-05-27T06:37:01Z
has_accepted_license: '1'
intvolume: ' 6'
issue: '2'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: Physical Review Research
publication_identifier:
eissn:
- 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Runaway transition in irreversible polymer condensation with cyclization
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2024'
...
---
_id: '17051'
abstract:
- lang: eng
text: "Memory-hard functions (MHF) are functions whose evaluation provably requires\r\na
lot of memory. While MHFs are an unkeyed primitive, it is natural to consider
the\r\nnotion of trapdoor MHFs (TMHFs). A TMHF is like an MHF, but when sampling\r\nthe
public parameters one also samples a trapdoor which allows evaluating the\r\nfunction
much cheaper.\r\nBiryukov and Perrin (Asiacrypt’17) were the first to consider
TMHFs and put\r\nforth a candidate TMHF construction called Diodon that is based
on the Scrypt\r\nMHF (Percival, BSDCan’09). To allow for a trapdoor, Scrypt’s
initial hash chain\r\nis replaced by a sequence of squares in a group of unknown
order where the order of\r\nthe group is the trapdoor. For a length n sequence
of squares and a group of order\r\nN, Diodon’s cumulative memory complexity (CMC)
is O(n2log N) without the\r\ntrapdoor and O(n log(n) log(N)2) with knowledge of
it.\r\nWhile Scrypt is proven to be optimally memory-hard in the random oracle\r\nmodel
(Alwen et al., Eurocrypt’17), Diodon’s memory-hardness has not been\r\nproven
so far. In this work, we fill this gap by rigorously analyzing a specific\r\ninstantiation
of Diodon. We show that its CMC is lower bounded by Ω( n2log nlog N)\r\nwhich
almost matches the upper bound. Our proof is based Alwen et al.’s lower\r\nbound
on Scrypt’s CMC but requires non-trivial modifications due to the algebraic\r\nstructure
of Diodon. Most importantly, our analysis involves a more elaborate\r\ncompression
argument and a solvability criterion for certain systems of Diophantine\r\nequations."
acknowledgement: We thank the Eurocrypt reviewers for their thorough review and for
pointing out related works. This research was funded in whole or in part by the
Austrian Science Fund (FWF) 10.55776/F85.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Benedikt
full_name: Auerbach, Benedikt
id: D33D2B18-E445-11E9-ABB7-15F4E5697425
last_name: Auerbach
orcid: 0000-0002-7553-6606
- first_name: Christoph Ullrich
full_name: Günther, Christoph Ullrich
id: ec98511c-eb8e-11eb-b029-edd25d7271a1
last_name: Günther
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Auerbach B, Günther CU, Pietrzak KZ. Trapdoor memory-hard functions. In: 43rd
Annual International Conference on the Theory and Applications of Cryptographic
Techniques. Vol 14653. Springer Nature; 2024:315-344. doi:10.1007/978-3-031-58734-4_11'
apa: 'Auerbach, B., Günther, C. U., & Pietrzak, K. Z. (2024). Trapdoor memory-hard
functions. In 43rd Annual International Conference on the Theory and Applications
of Cryptographic Techniques (Vol. 14653, pp. 315–344). Zurich, Switzerland:
Springer Nature. https://doi.org/10.1007/978-3-031-58734-4_11'
chicago: Auerbach, Benedikt, Christoph Ullrich Günther, and Krzysztof Z Pietrzak.
“Trapdoor Memory-Hard Functions.” In 43rd Annual International Conference on
the Theory and Applications of Cryptographic Techniques, 14653:315–44. Springer
Nature, 2024. https://doi.org/10.1007/978-3-031-58734-4_11.
ieee: B. Auerbach, C. U. Günther, and K. Z. Pietrzak, “Trapdoor memory-hard functions,”
in 43rd Annual International Conference on the Theory and Applications of Cryptographic
Techniques, Zurich, Switzerland, 2024, vol. 14653, pp. 315–344.
ista: 'Auerbach B, Günther CU, Pietrzak KZ. 2024. Trapdoor memory-hard functions.
43rd Annual International Conference on the Theory and Applications of Cryptographic
Techniques. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS,
vol. 14653, 315–344.'
mla: Auerbach, Benedikt, et al. “Trapdoor Memory-Hard Functions.” 43rd Annual
International Conference on the Theory and Applications of Cryptographic Techniques,
vol. 14653, Springer Nature, 2024, pp. 315–44, doi:10.1007/978-3-031-58734-4_11.
short: B. Auerbach, C.U. Günther, K.Z. Pietrzak, in:, 43rd Annual International
Conference on the Theory and Applications of Cryptographic Techniques, Springer
Nature, 2024, pp. 315–344.
conference:
end_date: 2024-05-30
location: Zurich, Switzerland
name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
start_date: 2024-05-26
corr_author: '1'
date_created: 2024-05-26T22:00:58Z
date_published: 2024-05-01T00:00:00Z
date_updated: 2025-09-08T07:35:40Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-031-58734-4_11
external_id:
isi:
- '001274940200011'
intvolume: ' 14653'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2024/312
month: '05'
oa: 1
oa_version: Preprint
page: 315-344
project:
- _id: 34a34d57-11ca-11ed-8bc3-a2688a8724e1
grant_number: F8509
name: Security and Privacy by Design for Complex Systems
publication: 43rd Annual International Conference on the Theory and Applications of
Cryptographic Techniques
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783031587337'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Trapdoor memory-hard functions
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14653
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '17054'
abstract:
- lang: eng
text: Photoisomerization and photoluminescence are two distinct energy dissipation
pathways in light-driven molecular motors. The photoisomerization properties of
discrete molecular motors have been well established in solution, but their photoluminescent
properties have been rarely reported—especially in aggregates. Here, it is shown
that an overcrowded alkene-based molecular motor exhibits distinct dynamic properties
in solution and aggregate states, for example, gel and solid states. Despite the
poor emissive properties of molecular motors in solution, a bright emission is
observed in the aggregate states, including in gel and the crystalline solid.
The emission wavelength is highly dependent on the nature of the supramolecular
packing and order in the aggregates. As a result, the fluorescent color can be
readily tuned reversibly via mechanical grinding and vapor fuming, which provides
a new platform for developing multi-stimuli functional materials.
acknowledgement: This work was supported by the National Natural Science Foundation
of China (grant nos. 22220102004, 22025503), Shanghai Municipal Science and Technology
Major Project (grant no. 2018SHZDZX03), the Innovation Program of Shanghai Municipal
Education Commission (2023ZKZD40), the Fundamental Research Funds for the Central
Universities, the Program of Introducing Talents of Discipline to Universities (grant
no. B16017), Science and Technology Commission of Shanghai Municipality (grant no.
21JC1401700), and the Starry Night Science Fund of Zhejiang University Shanghai
Institute for Advanced Study (grant no. SN-ZJU-SIAS-006), China Scholarship Council
(CSC PhD Fellowship No. 202006745016 to Yahan Shan). The authors gratefully acknowledge
financial support from the Dutch Ministry of Education, Culture and Science (gravitation
program no. 024.001.035 to Ben L. Feringa). The authors thank Dr. Youxin Fu and
Dr. Alexander Ryabchun for the help with fluorescence quantum yield measurement,
Cristina Nitu for the help with photoisomerzation quantum yield measurement, Prof.
Wesley R. Browne for the help with fluorescence lifetime measurement, and Dr. Jianyu
Zhang for fruitful discussion and revising the manuscript.
article_number: e584
article_processing_charge: Yes
article_type: original
author:
- first_name: Yahan
full_name: Shan, Yahan
last_name: Shan
- first_name: Jinyu
full_name: Sheng, Jinyu
id: 639f0526-27c9-11ee-95a6-966cd7f102d8
last_name: Sheng
- first_name: Qi
full_name: Zhang, Qi
last_name: Zhang
- first_name: Marc C.A.
full_name: Stuart, Marc C.A.
last_name: Stuart
- first_name: Da Hui
full_name: Qu, Da Hui
last_name: Qu
- first_name: Ben L.
full_name: Feringa, Ben L.
last_name: Feringa
citation:
ama: Shan Y, Sheng J, Zhang Q, Stuart MCA, Qu DH, Feringa BL. Multi-state photoluminescent
properties of an overcrowded alkene-based molecular motor in aggregates. Aggregate.
2024;5(5). doi:10.1002/agt2.584
apa: Shan, Y., Sheng, J., Zhang, Q., Stuart, M. C. A., Qu, D. H., & Feringa,
B. L. (2024). Multi-state photoluminescent properties of an overcrowded alkene-based
molecular motor in aggregates. Aggregate. Wiley. https://doi.org/10.1002/agt2.584
chicago: Shan, Yahan, Jinyu Sheng, Qi Zhang, Marc C.A. Stuart, Da Hui Qu, and Ben
L. Feringa. “Multi-State Photoluminescent Properties of an Overcrowded Alkene-Based
Molecular Motor in Aggregates.” Aggregate. Wiley, 2024. https://doi.org/10.1002/agt2.584.
ieee: Y. Shan, J. Sheng, Q. Zhang, M. C. A. Stuart, D. H. Qu, and B. L. Feringa,
“Multi-state photoluminescent properties of an overcrowded alkene-based molecular
motor in aggregates,” Aggregate, vol. 5, no. 5. Wiley, 2024.
ista: Shan Y, Sheng J, Zhang Q, Stuart MCA, Qu DH, Feringa BL. 2024. Multi-state
photoluminescent properties of an overcrowded alkene-based molecular motor in
aggregates. Aggregate. 5(5), e584.
mla: Shan, Yahan, et al. “Multi-State Photoluminescent Properties of an Overcrowded
Alkene-Based Molecular Motor in Aggregates.” Aggregate, vol. 5, no. 5,
e584, Wiley, 2024, doi:10.1002/agt2.584.
short: Y. Shan, J. Sheng, Q. Zhang, M.C.A. Stuart, D.H. Qu, B.L. Feringa, Aggregate
5 (2024).
date_created: 2024-05-26T22:00:58Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-01-09T09:41:53Z
day: '01'
ddc:
- '540'
department:
- _id: RaKl
doi: 10.1002/agt2.584
file:
- access_level: open_access
checksum: 1e79dc81d0edf0b441ef661a1890bbf5
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T09:38:51Z
date_updated: 2025-01-09T09:38:51Z
file_id: '18804'
file_name: 2024_Aggregate_Shan.pdf
file_size: 2299084
relation: main_file
success: 1
file_date_updated: 2025-01-09T09:38:51Z
has_accepted_license: '1'
intvolume: ' 5'
issue: '5'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: Aggregate
publication_identifier:
eissn:
- 2692-4560
issn:
- 2766-8541
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multi-state photoluminescent properties of an overcrowded alkene-based molecular
motor in aggregates
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2024'
...
---
_id: '17089'
abstract:
- lang: eng
text: How the coordination of neuronal spiking and brain rhythms between hippocampal
subregions supports memory function remains elusive. We studied the interregional
coordination of CA3 neuronal spiking with CA1 theta oscillations by recording
electrophysiological signals along the proximodistal axis of the hippocampus in
rats that were performing a high-memory-demand recognition memory task adapted
from humans. We found that CA3 population spiking occurs preferentially at the
peak of distal CA1 theta oscillations when memory was tested but only when previously
encountered stimuli were presented. In addition, decoding analyses revealed that
only population cell firing of proximal CA3 together with that of distal CA1 can
predict performance at test in the present non-spatial task. Overall, our work
demonstrates an important role for the synchronization of CA3 neuronal activity
with CA1 theta oscillations during memory testing.
acknowledgement: We would like to thank J. Maiwald for her assistance in animal behavior
training, experiments, and brain slice preparation; D. Koch for her assistance in
recording drive building and brain slicing; K. Kaefer and J. Wallenschus (IST Austria)
for their initial technical support; S. Mikulovich for her comments on an early
version of the manuscript; C. Reichert for his comments on SVM analyses; and J.
Pakan for English proofreading. This project is funded by the DFG (CRC 779 and CRC
1436).
article_number: '114276'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Shih Pi
full_name: Ku, Shih Pi
last_name: Ku
- first_name: Erika
full_name: Atucha, Erika
last_name: Atucha
- first_name: Nico
full_name: Alavi, Nico
last_name: Alavi
- first_name: Halla
full_name: Mulla-Osman, Halla
last_name: Mulla-Osman
- first_name: Rukhshona
full_name: Kayumova, Rukhshona
last_name: Kayumova
- first_name: Motoharu
full_name: Yoshida, Motoharu
last_name: Yoshida
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
- first_name: Magdalena M.
full_name: Sauvage, Magdalena M.
last_name: Sauvage
citation:
ama: Ku SP, Atucha E, Alavi N, et al. Phase locking of hippocampal CA3 neurons to
distal CA1 theta oscillations selectively predicts memory performance. Cell
Reports. 2024;43(6). doi:10.1016/j.celrep.2024.114276
apa: Ku, S. P., Atucha, E., Alavi, N., Mulla-Osman, H., Kayumova, R., Yoshida, M.,
… Sauvage, M. M. (2024). Phase locking of hippocampal CA3 neurons to distal CA1
theta oscillations selectively predicts memory performance. Cell Reports.
Elsevier. https://doi.org/10.1016/j.celrep.2024.114276
chicago: Ku, Shih Pi, Erika Atucha, Nico Alavi, Halla Mulla-Osman, Rukhshona Kayumova,
Motoharu Yoshida, Jozsef L Csicsvari, and Magdalena M. Sauvage. “Phase Locking
of Hippocampal CA3 Neurons to Distal CA1 Theta Oscillations Selectively Predicts
Memory Performance.” Cell Reports. Elsevier, 2024. https://doi.org/10.1016/j.celrep.2024.114276.
ieee: S. P. Ku et al., “Phase locking of hippocampal CA3 neurons to distal
CA1 theta oscillations selectively predicts memory performance,” Cell Reports,
vol. 43, no. 6. Elsevier, 2024.
ista: Ku SP, Atucha E, Alavi N, Mulla-Osman H, Kayumova R, Yoshida M, Csicsvari
JL, Sauvage MM. 2024. Phase locking of hippocampal CA3 neurons to distal CA1 theta
oscillations selectively predicts memory performance. Cell Reports. 43(6), 114276.
mla: Ku, Shih Pi, et al. “Phase Locking of Hippocampal CA3 Neurons to Distal CA1
Theta Oscillations Selectively Predicts Memory Performance.” Cell Reports,
vol. 43, no. 6, 114276, Elsevier, 2024, doi:10.1016/j.celrep.2024.114276.
short: S.P. Ku, E. Atucha, N. Alavi, H. Mulla-Osman, R. Kayumova, M. Yoshida, J.L.
Csicsvari, M.M. Sauvage, Cell Reports 43 (2024).
date_created: 2024-06-02T22:00:56Z
date_published: 2024-06-25T00:00:00Z
date_updated: 2025-09-08T07:42:25Z
day: '25'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1016/j.celrep.2024.114276
external_id:
isi:
- '001252792600001'
file:
- access_level: open_access
checksum: 9b43f8ca5e5a12ae96e3fb9df06385c1
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T07:12:45Z
date_updated: 2024-06-03T07:12:45Z
file_id: '17096'
file_name: 2024_CellReports_Ku.pdf
file_size: 4371015
relation: main_file
success: 1
file_date_updated: 2024-06-03T07:12:45Z
has_accepted_license: '1'
intvolume: ' 43'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Cell Reports
publication_identifier:
eissn:
- 2211-1247
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phase locking of hippocampal CA3 neurons to distal CA1 theta oscillations selectively
predicts memory performance
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 43
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '17090'
abstract:
- lang: eng
text: Primordial neutral atomic gas, mostly composed of hydrogen, is the raw material
for star formation in galaxies. However, there are few direct constraints on the
amount of neutral atomic hydrogen (H i) in galaxies at early cosmic times. We
analyzed James Webb Space Telescope (JWST) near-infrared spectroscopy of distant
galaxies, at redshifts ≳8. From a sample of 12 galaxies, we identified three that
show strong damped Lyman-α absorption due to H i in their local surroundings.
The galaxies are located at spectroscopic redshifts of 8.8, 10.2, and 11.4, corresponding
to 400 to 600 million years after the Big Bang. They have H i column densities
≳1022 cm−2, which is an order of magnitude higher than expected for a fully neutral
intergalactic medium, and constitute a gas-rich population of young star-forming
galaxies.
acknowledgement: K.E.H. acknowledges support from Carlsberg Foundation Reintegration
Fellowship grant CF21-0103. A.H. acknowledges support from the VILLUM FONDEN under
grant 37459. C.A.M. acknowledges support from the VILLUM FONDEN under grant 37459
and the Carlsberg Foundation under grant CF22-1322. N.R.T. was funded through Science
and Technology Facilities Council (STFC) consolidated grant ST/W000857/1. R.P.N.
acknowledges funding from JWST programs GO-1933 and GO-2279. R.P.N. was supported
by the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope
Science Institute, which is operated by the Association of Universities for Research
in Astronomy under NASA contract NAS5-26555. P.A.O. received funding from the Swiss
State Secretariat for Education, Research, and Innovation (SERI) under contract
number MB22.00072 and from the Swiss National Science Foundation (SNSF) through
project grant 200020_207349.
article_processing_charge: No
article_type: original
author:
- first_name: Kasper E.
full_name: Heintz, Kasper E.
last_name: Heintz
- first_name: Darach
full_name: Watson, Darach
last_name: Watson
- first_name: Gabriel
full_name: Brammer, Gabriel
last_name: Brammer
- first_name: Simone
full_name: Vejlgaard, Simone
last_name: Vejlgaard
- first_name: Anne
full_name: Hutter, Anne
last_name: Hutter
- first_name: Victoria B.
full_name: Strait, Victoria B.
last_name: Strait
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: Pascal A.
full_name: Oesch, Pascal A.
last_name: Oesch
- first_name: Páll
full_name: Jakobsson, Páll
last_name: Jakobsson
- first_name: Nial R.
full_name: Tanvir, Nial R.
last_name: Tanvir
- first_name: Peter
full_name: Laursen, Peter
last_name: Laursen
- first_name: Rohan P.
full_name: Naidu, Rohan P.
last_name: Naidu
- first_name: Charlotte A.
full_name: Mason, Charlotte A.
last_name: Mason
- first_name: Meghana
full_name: Killi, Meghana
last_name: Killi
- first_name: Intae
full_name: Jung, Intae
last_name: Jung
- first_name: Tiger Yu Yang
full_name: Hsiao, Tiger Yu Yang
last_name: Hsiao
- first_name: Unknown
full_name: Abdurro’Uf, Unknown
last_name: Abdurro’Uf
- first_name: Dan
full_name: Coe, Dan
last_name: Coe
- first_name: Pablo Arrabal
full_name: Haro, Pablo Arrabal
last_name: Haro
- first_name: Steven L.
full_name: Finkelstein, Steven L.
last_name: Finkelstein
- first_name: Sune
full_name: Toft, Sune
last_name: Toft
citation:
ama: Heintz KE, Watson D, Brammer G, et al. Strong damped Lyman-a absorption in
young star-forming galaxies at redshifts 9 to 11. Science. 2024;384(6698):890-894.
doi:10.1126/science.adj0343
apa: Heintz, K. E., Watson, D., Brammer, G., Vejlgaard, S., Hutter, A., Strait,
V. B., … Toft, S. (2024). Strong damped Lyman-a absorption in young star-forming
galaxies at redshifts 9 to 11. Science. AAAS. https://doi.org/10.1126/science.adj0343
chicago: Heintz, Kasper E., Darach Watson, Gabriel Brammer, Simone Vejlgaard, Anne
Hutter, Victoria B. Strait, Jorryt J Matthee, et al. “Strong Damped Lyman-a Absorption
in Young Star-Forming Galaxies at Redshifts 9 to 11.” Science. AAAS, 2024.
https://doi.org/10.1126/science.adj0343.
ieee: K. E. Heintz et al., “Strong damped Lyman-a absorption in young star-forming
galaxies at redshifts 9 to 11,” Science, vol. 384, no. 6698. AAAS, pp.
890–894, 2024.
ista: Heintz KE, Watson D, Brammer G, Vejlgaard S, Hutter A, Strait VB, Matthee
JJ, Oesch PA, Jakobsson P, Tanvir NR, Laursen P, Naidu RP, Mason CA, Killi M,
Jung I, Hsiao TYY, Abdurro’Uf U, Coe D, Haro PA, Finkelstein SL, Toft S. 2024.
Strong damped Lyman-a absorption in young star-forming galaxies at redshifts 9
to 11. Science. 384(6698), 890–894.
mla: Heintz, Kasper E., et al. “Strong Damped Lyman-a Absorption in Young Star-Forming
Galaxies at Redshifts 9 to 11.” Science, vol. 384, no. 6698, AAAS, 2024,
pp. 890–94, doi:10.1126/science.adj0343.
short: K.E. Heintz, D. Watson, G. Brammer, S. Vejlgaard, A. Hutter, V.B. Strait,
J.J. Matthee, P.A. Oesch, P. Jakobsson, N.R. Tanvir, P. Laursen, R.P. Naidu, C.A.
Mason, M. Killi, I. Jung, T.Y.Y. Hsiao, U. Abdurro’Uf, D. Coe, P.A. Haro, S.L.
Finkelstein, S. Toft, Science 384 (2024) 890–894.
date_created: 2024-06-02T22:00:56Z
date_published: 2024-05-24T00:00:00Z
date_updated: 2025-09-08T07:43:13Z
day: '24'
department:
- _id: JoMa
doi: 10.1126/science.adj0343
external_id:
isi:
- '001230029500001'
pmid:
- '38781391'
intvolume: ' 384'
isi: 1
issue: '6698'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://figshare.com/articles/journal_contribution/Strong_damped_Lyman-_absorption_in_young_star-forming_galaxies_at_redshifts_9_to_11/26069122?file=47174584
month: '05'
oa: 1
oa_version: Submitted Version
page: 890-894
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: Strong damped Lyman-a absorption in young star-forming galaxies at redshifts
9 to 11
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 384
year: '2024'
...
---
_id: '17091'
abstract:
- lang: eng
text: DNA sequences are connected to genes and functions in the developing and adult
brain
article_processing_charge: No
article_type: letter_note
author:
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Christoph
full_name: Bock, Christoph
last_name: Bock
citation:
ama: Novarino G, Bock C. Mapping the brain’s gene-regulatory maze. Science.
2024;384(6698):860-861. doi:10.1126/science.adp4663
apa: Novarino, G., & Bock, C. (2024). Mapping the brain’s gene-regulatory maze.
Science. AAAS. https://doi.org/10.1126/science.adp4663
chicago: Novarino, Gaia, and Christoph Bock. “Mapping the Brain’s Gene-Regulatory
Maze.” Science. AAAS, 2024. https://doi.org/10.1126/science.adp4663.
ieee: G. Novarino and C. Bock, “Mapping the brain’s gene-regulatory maze,” Science,
vol. 384, no. 6698. AAAS, pp. 860–861, 2024.
ista: Novarino G, Bock C. 2024. Mapping the brain’s gene-regulatory maze. Science.
384(6698), 860–861.
mla: Novarino, Gaia, and Christoph Bock. “Mapping the Brain’s Gene-Regulatory Maze.”
Science, vol. 384, no. 6698, AAAS, 2024, pp. 860–61, doi:10.1126/science.adp4663.
short: G. Novarino, C. Bock, Science 384 (2024) 860–861.
corr_author: '1'
date_created: 2024-06-02T22:00:57Z
date_published: 2024-05-24T00:00:00Z
date_updated: 2025-09-08T07:40:10Z
day: '24'
department:
- _id: GaNo
doi: 10.1126/science.adp4663
external_id:
isi:
- '001230076500007'
pmid:
- '38781359'
intvolume: ' 384'
isi: 1
issue: '6698'
language:
- iso: eng
month: '05'
oa_version: None
page: 860-861
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mapping the brain’s gene-regulatory maze
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 384
year: '2024'
...
---
_id: '17092'
abstract:
- lang: eng
text: Memories are thought to be stored in neural ensembles known as engrams that
are specifically reactivated during memory recall. Recent studies have found that
memory engrams of two events that happened close in time tend to overlap in the
hippocampus and the amygdala, and these overlaps have been shown to support memory
linking. It has been hypothesized that engram overlaps arise from the mechanisms
that regulate memory allocation itself, involving neural excitability, but the
exact process remains unclear. Indeed, most theoretical studies focus on synaptic
plasticity and little is known about the role of intrinsic plasticity, which could
be mediated by neural excitability and serve as a complementary mechanism for
forming memory engrams. Here, we developed a rate-based recurrent neural network
that includes both synaptic plasticity and neural excitability. We obtained structural
and functional overlap of memory engrams for contexts that are presented close
in time, consistent with experimental and computational studies. We then investigated
the role of excitability in memory allocation at the network level and unveiled
competitive mechanisms driven by inhibition. This work suggests mechanisms underlying
the role of intrinsic excitability in memory allocation and linking, and yields
predictions regarding the formation and the overlap of memory engrams.
acknowledgement: We thank Sadra Sadeh and Inês Completo Guerreiro for helpful comments
on the manuscript, Yosif Zaki and Denise J. Cai for useful feedback and members
of the Clopath lab for discussion and support. This work was supported by Biotechnology
and Biological Sciences Research Council (BB/N013956/1 awarded to C.C.), Wellcome
Trust (200790/Z/16/Z awarded to C.C.), the Simons Foundation (564408 awarded to
C.C.), and Engineering and Physical Sciences Research Council (EP/R035806/1 awarded
to C.C.).
article_number: e0846232024
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Geoffroy
full_name: Delamare, Geoffroy
last_name: Delamare
- first_name: Douglas
full_name: Feitosa Tomé, Douglas
id: 0eed2d40-3d48-11ec-8d38-f789cc2e40b2
last_name: Feitosa Tomé
- first_name: Claudia
full_name: Clopath, Claudia
last_name: Clopath
citation:
ama: Delamare G, Feitosa Tomé D, Clopath C. Intrinsic neural excitability biases
allocation and overlap of memory engrams. Journal of Neuroscience. 2024;44(21).
doi:10.1523/JNEUROSCI.0846-23.2024
apa: Delamare, G., Feitosa Tomé, D., & Clopath, C. (2024). Intrinsic neural
excitability biases allocation and overlap of memory engrams. Journal of Neuroscience.
Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.0846-23.2024
chicago: Delamare, Geoffroy, Douglas Feitosa Tomé, and Claudia Clopath. “Intrinsic
Neural Excitability Biases Allocation and Overlap of Memory Engrams.” Journal
of Neuroscience. Society for Neuroscience, 2024. https://doi.org/10.1523/JNEUROSCI.0846-23.2024.
ieee: G. Delamare, D. Feitosa Tomé, and C. Clopath, “Intrinsic neural excitability
biases allocation and overlap of memory engrams,” Journal of Neuroscience,
vol. 44, no. 21. Society for Neuroscience, 2024.
ista: Delamare G, Feitosa Tomé D, Clopath C. 2024. Intrinsic neural excitability
biases allocation and overlap of memory engrams. Journal of Neuroscience. 44(21),
e0846232024.
mla: Delamare, Geoffroy, et al. “Intrinsic Neural Excitability Biases Allocation
and Overlap of Memory Engrams.” Journal of Neuroscience, vol. 44, no. 21,
e0846232024, Society for Neuroscience, 2024, doi:10.1523/JNEUROSCI.0846-23.2024.
short: G. Delamare, D. Feitosa Tomé, C. Clopath, Journal of Neuroscience 44 (2024).
date_created: 2024-06-02T22:00:57Z
date_published: 2024-05-22T00:00:00Z
date_updated: 2025-09-08T07:40:58Z
day: '22'
ddc:
- '570'
department:
- _id: TiVo
doi: 10.1523/JNEUROSCI.0846-23.2024
external_id:
isi:
- '001249681000008'
pmid:
- '38561228'
file:
- access_level: open_access
checksum: 4e19159800db605b802c721e4d4b1ffe
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T06:34:21Z
date_updated: 2024-06-03T06:34:21Z
file_id: '17095'
file_name: 2024_JourNeuroscience_Delamare.pdf
file_size: 920354
relation: main_file
success: 1
file_date_updated: 2024-06-03T06:34:21Z
has_accepted_license: '1'
intvolume: ' 44'
isi: 1
issue: '21'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
eissn:
- 1529-2401
issn:
- 0270-6474
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: Intrinsic neural excitability biases allocation and overlap of memory engrams
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 44
year: '2024'
...
---
_id: '17093'
abstract:
- lang: eng
text: 'Federated Learning (FL) enables large-scale distributed training of machine
learning models, while still allowing individual nodes to maintain data locally.
However, executing FL at scale comes with inherent practical challenges: 1) heterogeneity
of the local node data distributions, 2) heterogeneity of node computational speeds
(asynchrony), but also 3) constraints in the amount of communication between the
clients and the server. In this work, we present the first variant of the classic
federated averaging (FedAvg) algorithm which, at the same time, supports data
heterogeneity, partial client asynchrony, and communication compression. Our algorithm
comes with a novel, rigorous analysis showing that, in spite of these system relaxations,
it can provide similar convergence to FedAvg in interesting parameter regimes.
Experimental results in the rigorous LEAF benchmark on setups of up to 300 nodes
show that our algorithm ensures fast convergence for standard federated tasks,
improving upon prior quantized and asynchronous approaches.'
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Hossein
full_name: Zakerinia, Hossein
id: 653bd8b6-f394-11eb-9cf6-c0bbf6cd78d4
last_name: Zakerinia
- first_name: Shayan
full_name: Talaei, Shayan
last_name: Talaei
- first_name: Giorgi
full_name: Nadiradze, Giorgi
id: 3279A00C-F248-11E8-B48F-1D18A9856A87
last_name: Nadiradze
orcid: 0000-0001-5634-0731
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Zakerinia H, Talaei S, Nadiradze G, Alistarh D-A. Communication-efficient
federated learning with data and client heterogeneity. In: Proceedings of the
27th International Conference on Artificial Intelligence and Statistics. Vol
238. ML Research Press; 2024:3448-3456.'
apa: 'Zakerinia, H., Talaei, S., Nadiradze, G., & Alistarh, D.-A. (2024). Communication-efficient
federated learning with data and client heterogeneity. In Proceedings of the
27th International Conference on Artificial Intelligence and Statistics (Vol.
238, pp. 3448–3456). Valencia, Spain: ML Research Press.'
chicago: Zakerinia, Hossein, Shayan Talaei, Giorgi Nadiradze, and Dan-Adrian Alistarh.
“Communication-Efficient Federated Learning with Data and Client Heterogeneity.”
In Proceedings of the 27th International Conference on Artificial Intelligence
and Statistics, 238:3448–56. ML Research Press, 2024.
ieee: H. Zakerinia, S. Talaei, G. Nadiradze, and D.-A. Alistarh, “Communication-efficient
federated learning with data and client heterogeneity,” in Proceedings of the
27th International Conference on Artificial Intelligence and Statistics, Valencia,
Spain, 2024, vol. 238, pp. 3448–3456.
ista: 'Zakerinia H, Talaei S, Nadiradze G, Alistarh D-A. 2024. Communication-efficient
federated learning with data and client heterogeneity. Proceedings of the 27th
International Conference on Artificial Intelligence and Statistics. AISTATS: Conference
on Artificial Intelligence and Statistics, PMLR, vol. 238, 3448–3456.'
mla: Zakerinia, Hossein, et al. “Communication-Efficient Federated Learning with
Data and Client Heterogeneity.” Proceedings of the 27th International Conference
on Artificial Intelligence and Statistics, vol. 238, ML Research Press, 2024,
pp. 3448–56.
short: H. Zakerinia, S. Talaei, G. Nadiradze, D.-A. Alistarh, in:, Proceedings of
the 27th International Conference on Artificial Intelligence and Statistics, ML
Research Press, 2024, pp. 3448–3456.
conference:
end_date: 2024-05-04
location: Valencia, Spain
name: 'AISTATS: Conference on Artificial Intelligence and Statistics'
start_date: 2024-05-02
corr_author: '1'
date_created: 2024-06-02T22:00:57Z
date_published: 2024-05-01T00:00:00Z
date_updated: 2024-10-09T21:08:57Z
day: '01'
department:
- _id: DaAl
- _id: ChLa
external_id:
arxiv:
- '2206.10032'
intvolume: ' 238'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2206.10032
month: '05'
oa: 1
oa_version: Preprint
page: 3448-3456
publication: Proceedings of the 27th International Conference on Artificial Intelligence
and Statistics
publication_identifier:
eissn:
- 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Communication-efficient federated learning with data and client heterogeneity
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 238
year: '2024'
...
---
_id: '17098'
abstract:
- lang: eng
text: Turn-based discounted-sum games are two-player zero-sum games played on finite
directed graphs. The vertices of the graph are partitioned between player 1 and
player 2. Plays are infinite walks on the graph where the next vertex is decided
by a player that owns the current vertex. Each edge is assigned an integer weight
and the payoff of a play is the discounted-sum of the weights of the play. The
goal of player 1 is to maximize the discounted-sum payoff against the adversarial
player 2. These games lie in NP ∩ coNP and are among the rare combinatorial problems
that belong to this complexity class and the existence of a polynomial-time algorithm
is a major open question. Since breaking the general exponential barrier has been
a challenging problem, faster parameterized algorithms have been considered. If
the discount factor is expressed in unary, then discounted-sum games can be solved
in polynomial time. However, if the discount factor is arbitrary (or expressed
in binary), but the weights are in unary, none of the existing approaches yield
a sub-exponential bound. Our main result is a new analysis technique for a classical
algorithm (namely, the strategy iteration algorithm) that present a new runtime
bound which is [EQUATION] for game graphs with n vertices and absolute weights
of at most W. In particular, our result yields a deterministic sub-exponential
bound for games with weights that are constant or represented in unary.
acknowledgement: "This research was partially supported by the ERC CoG 863818 (ForM-SMArt)
grant.\r\n"
article_number: '6'
article_processing_charge: No
arxiv: 1
author:
- first_name: Ali
full_name: Asadi, Ali
id: 02d96aae-000e-11ec-b801-cadd0a5eefbb
last_name: Asadi
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Jakub
full_name: Svoboda, Jakub
id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
last_name: Svoboda
orcid: 0000-0002-1419-3267
- first_name: Raimundo J
full_name: Saona Urmeneta, Raimundo J
id: BD1DF4C4-D767-11E9-B658-BC13E6697425
last_name: Saona Urmeneta
orcid: 0000-0001-5103-038X
citation:
ama: 'Asadi A, Chatterjee K, Svoboda J, Saona Urmeneta RJ. Deterministic sub-exponential
algorithm for discounted-sum games with unary weights. In: 39th Annual ACM/IEEE
Symposium on Logic in Computer Science. Association for Computing Machinery;
2024. doi:10.1145/3661814.3662080'
apa: 'Asadi, A., Chatterjee, K., Svoboda, J., & Saona Urmeneta, R. J. (2024).
Deterministic sub-exponential algorithm for discounted-sum games with unary weights.
In 39th Annual ACM/IEEE Symposium on Logic in Computer Science. Tallinn,
Estonia: Association for Computing Machinery. https://doi.org/10.1145/3661814.3662080'
chicago: Asadi, Ali, Krishnendu Chatterjee, Jakub Svoboda, and Raimundo J Saona
Urmeneta. “Deterministic Sub-Exponential Algorithm for Discounted-Sum Games with
Unary Weights.” In 39th Annual ACM/IEEE Symposium on Logic in Computer Science.
Association for Computing Machinery, 2024. https://doi.org/10.1145/3661814.3662080.
ieee: A. Asadi, K. Chatterjee, J. Svoboda, and R. J. Saona Urmeneta, “Deterministic
sub-exponential algorithm for discounted-sum games with unary weights,” in 39th
Annual ACM/IEEE Symposium on Logic in Computer Science, Tallinn, Estonia,
2024.
ista: 'Asadi A, Chatterjee K, Svoboda J, Saona Urmeneta RJ. 2024. Deterministic
sub-exponential algorithm for discounted-sum games with unary weights. 39th Annual
ACM/IEEE Symposium on Logic in Computer Science. LICS: Logic in Computer Science,
6.'
mla: Asadi, Ali, et al. “Deterministic Sub-Exponential Algorithm for Discounted-Sum
Games with Unary Weights.” 39th Annual ACM/IEEE Symposium on Logic in Computer
Science, 6, Association for Computing Machinery, 2024, doi:10.1145/3661814.3662080.
short: A. Asadi, K. Chatterjee, J. Svoboda, R.J. Saona Urmeneta, in:, 39th Annual
ACM/IEEE Symposium on Logic in Computer Science, Association for Computing Machinery,
2024.
conference:
end_date: 2024-07-11
location: Tallinn, Estonia
name: 'LICS: Logic in Computer Science'
start_date: 2024-07-08
corr_author: '1'
date_created: 2024-06-03T07:43:15Z
date_published: 2024-07-08T00:00:00Z
date_updated: 2025-09-08T07:44:29Z
day: '08'
department:
- _id: KrCh
doi: 10.1145/3661814.3662080
ec_funded: 1
external_id:
arxiv:
- '2405.02479'
isi:
- '001275042100006'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2405.02479
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: 39th Annual ACM/IEEE Symposium on Logic in Computer Science
publication_identifier:
eissn:
- 1043-6871
isbn:
- '9798400706608'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Deterministic sub-exponential algorithm for discounted-sum games with unary
weights
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '17099'
abstract:
- lang: eng
text: "We study two-player zero-sum concurrent stochastic games with finite state
and action space played for an infinite number of steps. In every step, the two
players simultaneously and independently choose an action. Given the current state
and the chosen actions, the next state is obtained according to a stochastic transition
function. An objective is a measurable function on plays (or infinite trajectories)
of the game, and the value for an objective is the maximal expectation that the
player can guarantee against the adversarial player. We consider: (a) stateful-discounted
objectives, which are similar to the classical discounted-sum objectives, but
states are associated with different discount factors rather than a single discount
factor; and (b) parity objectives, which are a canonical representation for ω-regular
objectives. For stateful-discounted objectives, given an ordering of the discount
factors, the limit value is the limit of the value of the stateful-discounted
objectives, as the discount factors approach zero according to the given order.\r\nThe
computational problem we consider is the approximation of the value within an
arbitrary\r\nadditive error. The above problem is known to be in EXPSPACE for
the limit value of statefuldiscounted objectives and in PSPACE for parity objectives.
The best-known algorithms for both the above problems are at least exponential
time, with an exponential dependence on the number of states and actions. Our
main results for the value approximation problem for the limit value of stateful-discounted
objectives and parity objectives are as follows: (a) we establish TFNP[NP] complexity;
and (b) we present algorithms that improve the dependency on the number of actions
in the exponent from linear to logarithmic. In particular, if the number of states
is constant, our algorithms run in polynomial time."
acknowledgement: "This research was partially supported by ERC CoG 863818 (ForM-SMArt),
Austrian\r\nScience Fund (FWF) 10.55776/COE12, and French Agence Nationale de la
Recherche (ANR)\r\nANR-21-CE40-0020 (CONVERGENCE project)"
alternative_title:
- LIPIcs
article_number: '5'
article_processing_charge: No
arxiv: 1
author:
- first_name: Ali
full_name: Asadi, Ali
id: 02d96aae-000e-11ec-b801-cadd0a5eefbb
last_name: Asadi
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Raimundo J
full_name: Saona Urmeneta, Raimundo J
id: BD1DF4C4-D767-11E9-B658-BC13E6697425
last_name: Saona Urmeneta
orcid: 0000-0001-5103-038X
- first_name: Jakub
full_name: Svoboda, Jakub
id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
last_name: Svoboda
orcid: 0000-0002-1419-3267
citation:
ama: 'Asadi A, Chatterjee K, Saona Urmeneta RJ, Svoboda J. Concurrent stochastic
games with stateful-discounted and parity objectives: Complexity and algorithms.
In: 44th IARCS Annual Conference on Foundations of Software Technology and
Theoretical Computer Science. Vol 323. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik; 2024. doi:10.4230/LIPIcs.FSTTCS.2024.5'
apa: 'Asadi, A., Chatterjee, K., Saona Urmeneta, R. J., & Svoboda, J. (2024).
Concurrent stochastic games with stateful-discounted and parity objectives: Complexity
and algorithms. In 44th IARCS Annual Conference on Foundations of Software
Technology and Theoretical Computer Science (Vol. 323). Gujarat, India: Schloss
Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.FSTTCS.2024.5'
chicago: 'Asadi, Ali, Krishnendu Chatterjee, Raimundo J Saona Urmeneta, and Jakub
Svoboda. “Concurrent Stochastic Games with Stateful-Discounted and Parity Objectives:
Complexity and Algorithms.” In 44th IARCS Annual Conference on Foundations
of Software Technology and Theoretical Computer Science, Vol. 323. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2024. https://doi.org/10.4230/LIPIcs.FSTTCS.2024.5.'
ieee: 'A. Asadi, K. Chatterjee, R. J. Saona Urmeneta, and J. Svoboda, “Concurrent
stochastic games with stateful-discounted and parity objectives: Complexity and
algorithms,” in 44th IARCS Annual Conference on Foundations of Software Technology
and Theoretical Computer Science, Gujarat, India, 2024, vol. 323.'
ista: 'Asadi A, Chatterjee K, Saona Urmeneta RJ, Svoboda J. 2024. Concurrent stochastic
games with stateful-discounted and parity objectives: Complexity and algorithms.
44th IARCS Annual Conference on Foundations of Software Technology and Theoretical
Computer Science. FSTTCS: Foundations of Software Technology and Theoretical Computer
Science, LIPIcs, vol. 323, 5.'
mla: 'Asadi, Ali, et al. “Concurrent Stochastic Games with Stateful-Discounted and
Parity Objectives: Complexity and Algorithms.” 44th IARCS Annual Conference
on Foundations of Software Technology and Theoretical Computer Science, vol.
323, 5, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:10.4230/LIPIcs.FSTTCS.2024.5.'
short: A. Asadi, K. Chatterjee, R.J. Saona Urmeneta, J. Svoboda, in:, 44th IARCS
Annual Conference on Foundations of Software Technology and Theoretical Computer
Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
end_date: 2024-12-18
location: Gujarat, India
name: 'FSTTCS: Foundations of Software Technology and Theoretical Computer Science'
start_date: 2024-12-16
corr_author: '1'
date_created: 2024-06-03T07:44:27Z
date_published: 2024-12-05T00:00:00Z
date_updated: 2025-12-02T13:40:52Z
day: '05'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.FSTTCS.2024.5
ec_funded: 1
external_id:
arxiv:
- '2405.02486'
isi:
- '001537516500005'
file:
- access_level: open_access
checksum: 5b544ab4692b93300b404435c036ddd4
content_type: application/pdf
creator: dernst
date_created: 2025-01-08T09:49:31Z
date_updated: 2025-01-08T09:49:31Z
file_id: '18777'
file_name: 2024_LIPIcs_Asadi.pdf
file_size: 847960
relation: main_file
success: 1
file_date_updated: 2025-01-08T09:49:31Z
has_accepted_license: '1'
intvolume: ' 323'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: 44th IARCS Annual Conference on Foundations of Software Technology and
Theoretical Computer Science
publication_identifier:
isbn:
- '9783959773553'
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Concurrent stochastic games with stateful-discounted and parity objectives:
Complexity and algorithms'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 323
year: '2024'
...
---
_id: '17101'
abstract:
- lang: eng
text: "This paper considers a class of two-player zero-sum games on directed graphs
whose vertices are equipped with random payoffs of bounded support known by both
players.\r\nStarting from a fixed vertex, players take turns to move a token along
the edges of the graph.\r\nOn the one hand, for acyclic directed graphs of bounded
degree and sub-exponential expansion, we show that the value of the game converges
almost surely to a constant at an exponential rate dominated in terms of the expansion.\r\nOn
the other hand, for the infinite d-ary tree that does not fall into the previous
class of graphs, we show convergence at a double-exponential rate in terms of
the expansion."
acknowledgement: "This work was supported by the French Agence Nationale de la Recherche
(ANR) under references ANR-21-CE40-0020 (CONVERGENCE project) and ANR-20-CE40-0002
(GrHyDy), and by Fondecyt grant 1220174. This collaboration was mainly conducted
during a 1-year visit of Bruno Ziliotto to the Center for Mathematical Modeling
(CMM) at University of Chile in 2023,\r\nunder the IRL program of CNRS."
article_number: '2401.16252'
article_processing_charge: No
arxiv: 1
author:
- first_name: Luc
full_name: Attia, Luc
last_name: Attia
- first_name: Lyuben
full_name: Lichev, Lyuben
last_name: Lichev
- first_name: Dieter
full_name: Mitsche, Dieter
last_name: Mitsche
- first_name: Raimundo J
full_name: Saona Urmeneta, Raimundo J
id: BD1DF4C4-D767-11E9-B658-BC13E6697425
last_name: Saona Urmeneta
orcid: 0000-0001-5103-038X
- first_name: Bruno
full_name: Ziliotto, Bruno
last_name: Ziliotto
citation:
ama: Attia L, Lichev L, Mitsche D, Saona Urmeneta RJ, Ziliotto B. Zero-sum random
games on directed graphs. arXiv. doi:10.48550/arXiv.2401.16252
apa: Attia, L., Lichev, L., Mitsche, D., Saona Urmeneta, R. J., & Ziliotto,
B. (n.d.). Zero-sum random games on directed graphs. arXiv. https://doi.org/10.48550/arXiv.2401.16252
chicago: Attia, Luc, Lyuben Lichev, Dieter Mitsche, Raimundo J Saona Urmeneta, and
Bruno Ziliotto. “Zero-Sum Random Games on Directed Graphs.” ArXiv, n.d.
https://doi.org/10.48550/arXiv.2401.16252.
ieee: L. Attia, L. Lichev, D. Mitsche, R. J. Saona Urmeneta, and B. Ziliotto, “Zero-sum
random games on directed graphs,” arXiv. .
ista: Attia L, Lichev L, Mitsche D, Saona Urmeneta RJ, Ziliotto B. Zero-sum random
games on directed graphs. arXiv, 2401.16252.
mla: Attia, Luc, et al. “Zero-Sum Random Games on Directed Graphs.” ArXiv,
2401.16252, doi:10.48550/arXiv.2401.16252.
short: L. Attia, L. Lichev, D. Mitsche, R.J. Saona Urmeneta, B. Ziliotto, ArXiv
(n.d.).
date_created: 2024-06-03T07:45:22Z
date_published: 2024-01-29T00:00:00Z
date_updated: 2024-06-03T07:50:29Z
day: '29'
department:
- _id: KrCh
doi: 10.48550/arXiv.2401.16252
external_id:
arxiv:
- '2401.16252'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2401.16252
month: '01'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Zero-sum random games on directed graphs
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
DOAJ_listed: '1'
_id: '17103'
abstract:
- lang: eng
text: Phytoalexin sakuranetin functions in resistance against rice blast. However,
the mechanisms underlying the effects of sakuranetin remains elusive. Here, we
report that rice lines expressing resistance (R) genes were found to contain high
levels of sakuranetin, which correlates with attenuated endocytic trafficking
of plasma membrane (PM) proteins. Exogenous and endogenous sakuranetin attenuates
the endocytosis of various PM proteins and the fungal effector PWL2. Moreover,
accumulation of the avirulence protein AvrCO39, resulting from uptake into rice
cells by Magnaporthe oryzae, was reduced following treatment with sakuranetin.
Pharmacological manipulation of clathrin-mediated endocytic (CME) suggests that
this pathway is targeted by sakuranetin. Indeed, attenuation of CME by sakuranetin
is sufficient to convey resistance against rice blast. Our data reveals a mechanism
of rice against M. oryzae by increasing sakuranetin levels and repressing the
CME of pathogen effectors, which is distinct from the action of many R genes that
mainly function by modulating transcription.
acknowledgement: We thank Professor Jianqiang Wu (Kunming Institute of Botany, Chinese
Academy of Sciences) for his generous support with the sakuranetin measurement.
We thank International Rice Research Institute (IRRI) for provision of the rice
NILs. We thank Professor Zhongkai Zhang (Yunnan Academy of Agricultural Sciences)
for his generous support with subcellular structure observation of rice roots. We
thank Professor Barbara Valent (Kansas State University) for her generously provision
of the plasmid containing the PWL2 gene. We thank Professor Zuhua He (Chinese Academy
of Sciences) for the gift of the transgenic rice line expressing the Pigm gene,
OsNPR1-RNAi mutant line and ROD1-overexpression rice line. We thank Professor Yinong
Yang (The Pennsylvania State University) for provision of the rice line NahG. We
thank Professor Muyuan Zhu (Zhejiang University) for provision of the transgenic
plants overexpressing miR393a. We thank Professor Zhengge Zhu (Hebei Normal University)
for provision of the rice line overexpressing OsPIN3t-GFP. We thank Professor Yanhua
Qi (Zhejiang University) for provision of the arf12 mutant line. Thanks also go
to Professor Jean-Benoit Morel (Plant Health Institute of Montpellier) for provision
of the fungus M. oryzae strain Guy11 (AvrCo39-mRFP). This work was supported by
grants from the National Natural Science Foundation of China (Grant Nos. 32260085,
31460453, 31660501, 31860064, 31760500 and 31901870), the Major Special Program
for Scientific Research, Education Department of Yunnan Province (Grant No. ZD2015005).
The project was also sponsored by SRF for ROCS, SEM (Grant No. [2013] 1792), the
Key Projects of Applied Basic Research Plan of Yunnan Province (Grant No. 2017FA018,
202301AS070082), the Major Science and Technology Project in Yunnan Province (202102AE090042,
202202AE090036 and 202102AE090017), the Young and Middle-Aged Academic and Technical
Leaders Reserve Talent Program in Yunnan Province (202205AC160076), the China Postdoctoral
Science Foundation (2019M653849XB) and the National Key Research and Development
Program of China (2023YFE0107500).
article_number: '3437'
article_processing_charge: Yes
article_type: original
author:
- first_name: Lihui
full_name: Jiang, Lihui
last_name: Jiang
- first_name: Xiaoyan
full_name: Zhang, Xiaoyan
last_name: Zhang
- first_name: Yiting
full_name: Zhao, Yiting
last_name: Zhao
- first_name: Haiyan
full_name: Zhu, Haiyan
last_name: Zhu
- first_name: Qijing
full_name: Fu, Qijing
last_name: Fu
- first_name: Xinqi
full_name: Lu, Xinqi
last_name: Lu
- first_name: Wuying
full_name: Huang, Wuying
last_name: Huang
- first_name: Xinyue
full_name: Yang, Xinyue
last_name: Yang
- first_name: Xuan
full_name: Zhou, Xuan
last_name: Zhou
- first_name: Lixia
full_name: Wu, Lixia
last_name: Wu
- first_name: Ao
full_name: Yang, Ao
last_name: Yang
- first_name: Xie
full_name: He, Xie
last_name: He
- first_name: Man
full_name: Dong, Man
last_name: Dong
- first_name: Ziai
full_name: Peng, Ziai
last_name: Peng
- first_name: Jing
full_name: Yang, Jing
last_name: Yang
- first_name: Liwei
full_name: Guo, Liwei
last_name: Guo
- first_name: Jiancheng
full_name: Wen, Jiancheng
last_name: Wen
- first_name: Huichuan
full_name: Huang, Huichuan
last_name: Huang
- first_name: Yong
full_name: Xie, Yong
last_name: Xie
- first_name: Shusheng
full_name: Zhu, Shusheng
last_name: Zhu
- first_name: Chengyun
full_name: Li, Chengyun
last_name: Li
- first_name: Xiahong
full_name: He, Xiahong
last_name: He
- first_name: Youyong
full_name: Zhu, Youyong
last_name: Zhu
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Yunlong
full_name: Du, Yunlong
last_name: Du
citation:
ama: Jiang L, Zhang X, Zhao Y, et al. Phytoalexin sakuranetin attenuates endocytosis
and enhances resistance to rice blast. Nature Communications. 2024;15.
doi:10.1038/s41467-024-47746-y
apa: Jiang, L., Zhang, X., Zhao, Y., Zhu, H., Fu, Q., Lu, X., … Du, Y. (2024). Phytoalexin
sakuranetin attenuates endocytosis and enhances resistance to rice blast. Nature
Communications. Springer Nature. https://doi.org/10.1038/s41467-024-47746-y
chicago: Jiang, Lihui, Xiaoyan Zhang, Yiting Zhao, Haiyan Zhu, Qijing Fu, Xinqi
Lu, Wuying Huang, et al. “Phytoalexin Sakuranetin Attenuates Endocytosis and Enhances
Resistance to Rice Blast.” Nature Communications. Springer Nature, 2024.
https://doi.org/10.1038/s41467-024-47746-y.
ieee: L. Jiang et al., “Phytoalexin sakuranetin attenuates endocytosis and
enhances resistance to rice blast,” Nature Communications, vol. 15. Springer
Nature, 2024.
ista: Jiang L, Zhang X, Zhao Y, Zhu H, Fu Q, Lu X, Huang W, Yang X, Zhou X, Wu L,
Yang A, He X, Dong M, Peng Z, Yang J, Guo L, Wen J, Huang H, Xie Y, Zhu S, Li
C, He X, Zhu Y, Friml J, Du Y. 2024. Phytoalexin sakuranetin attenuates endocytosis
and enhances resistance to rice blast. Nature Communications. 15, 3437.
mla: Jiang, Lihui, et al. “Phytoalexin Sakuranetin Attenuates Endocytosis and Enhances
Resistance to Rice Blast.” Nature Communications, vol. 15, 3437, Springer
Nature, 2024, doi:10.1038/s41467-024-47746-y.
short: L. Jiang, X. Zhang, Y. Zhao, H. Zhu, Q. Fu, X. Lu, W. Huang, X. Yang, X.
Zhou, L. Wu, A. Yang, X. He, M. Dong, Z. Peng, J. Yang, L. Guo, J. Wen, H. Huang,
Y. Xie, S. Zhu, C. Li, X. He, Y. Zhu, J. Friml, Y. Du, Nature Communications 15
(2024).
date_created: 2024-06-03T08:54:50Z
date_published: 2024-04-23T00:00:00Z
date_updated: 2025-09-08T07:46:24Z
day: '23'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1038/s41467-024-47746-y
external_id:
isi:
- '001207290500013'
pmid:
- '38653755'
file:
- access_level: open_access
checksum: 80cb2f2c538e81064f4836b54bc313ca
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T12:05:10Z
date_updated: 2024-06-03T12:05:10Z
file_id: '17110'
file_name: 2024_NatureComm_Jiang.pdf
file_size: 8013695
relation: main_file
success: 1
file_date_updated: 2024-06-03T12:05:10Z
has_accepted_license: '1'
intvolume: ' 15'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phytoalexin sakuranetin attenuates endocytosis and enhances resistance to rice
blast
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15
year: '2024'
...
---
_id: '17104'
abstract:
- lang: eng
text: 'The homeostasis of epithelial tissue relies on a balance between the self-renewal
of stem cell populations, cellular differentiation, and loss. Although this balance
needs to be tightly regulated to avoid pathologies, such as tumor growth, the
regulatory mechanisms, both cell-intrinsic and collective, which ensure tissue
steady-state are still poorly understood. Here, we develop a computational model
that incorporates basic assumptions of stem cell renewal into distinct populations
and mechanical interactions between cells. We find that the model generates unexpected
dynamic features: stem cells repel each other in the bulk tissue and are thus
found rather isolated, as in a number of in vivo contexts. By mapping the system
onto a gas of passive Brownian particles with effective repulsive interactions,
that arise from the generated flows of differentiated cells, we show that we can
quantitatively describe such stem cell distribution in tissues. The interaction
potential between a pair of stem cells decays exponentially with a characteristic
length that spans several cell sizes, corresponding to the volume of cells generated
per stem cell division. Our findings may help understanding the dynamics of normal
and cancerous epithelial tissues.'
acknowledgement: JE and JK gratefully acknowledge financial support from the Initiative
and Networking Fund (IVF) via the grant number ERC-RA-004. Simulations were performed
with computing resources granted by RWTH Aachen University under project ‘rwth0475’.
article_number: '097'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Johannes C.
full_name: Krämer, Johannes C.
last_name: Krämer
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Gerhard
full_name: Gompper, Gerhard
last_name: Gompper
- first_name: Jens
full_name: Elgeti, Jens
last_name: Elgeti
citation:
ama: Krämer JC, Hannezo EB, Gompper G, Elgeti J. Mechanically-driven stem cell separation
in tissues caused by proliferating daughter cells. SciPost Physics. 2024;16(4).
doi:10.21468/scipostphys.16.4.097
apa: Krämer, J. C., Hannezo, E. B., Gompper, G., & Elgeti, J. (2024). Mechanically-driven
stem cell separation in tissues caused by proliferating daughter cells. SciPost
Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.16.4.097
chicago: Krämer, Johannes C., Edouard B Hannezo, Gerhard Gompper, and Jens Elgeti.
“Mechanically-Driven Stem Cell Separation in Tissues Caused by Proliferating Daughter
Cells.” SciPost Physics. SciPost Foundation, 2024. https://doi.org/10.21468/scipostphys.16.4.097.
ieee: J. C. Krämer, E. B. Hannezo, G. Gompper, and J. Elgeti, “Mechanically-driven
stem cell separation in tissues caused by proliferating daughter cells,” SciPost
Physics, vol. 16, no. 4. SciPost Foundation, 2024.
ista: Krämer JC, Hannezo EB, Gompper G, Elgeti J. 2024. Mechanically-driven stem
cell separation in tissues caused by proliferating daughter cells. SciPost Physics.
16(4), 097.
mla: Krämer, Johannes C., et al. “Mechanically-Driven Stem Cell Separation in Tissues
Caused by Proliferating Daughter Cells.” SciPost Physics, vol. 16, no.
4, 097, SciPost Foundation, 2024, doi:10.21468/scipostphys.16.4.097.
short: J.C. Krämer, E.B. Hannezo, G. Gompper, J. Elgeti, SciPost Physics 16 (2024).
date_created: 2024-06-03T08:58:44Z
date_published: 2024-04-08T00:00:00Z
date_updated: 2025-09-08T07:45:40Z
day: '08'
ddc:
- '530'
department:
- _id: EdHa
doi: 10.21468/scipostphys.16.4.097
external_id:
arxiv:
- '2310.04272'
isi:
- '001202370200001'
file:
- access_level: open_access
checksum: 6fdeecd21c166db8dedb927ecc2e6025
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T11:18:51Z
date_updated: 2024-06-03T11:18:51Z
file_id: '17109'
file_name: 2024_SciPostPhys_Kraemer.pdf
file_size: 4973291
relation: main_file
success: 1
file_date_updated: 2024-06-03T11:18:51Z
has_accepted_license: '1'
intvolume: ' 16'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: SciPost Physics
publication_identifier:
issn:
- 2542-4653
publication_status: published
publisher: SciPost Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanically-driven stem cell separation in tissues caused by proliferating
daughter cells
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 16
year: '2024'
...
---
_id: '17105'
abstract:
- lang: eng
text: The development of photoresponsive systems with non-invasive orthogonal control
by distinct wavelengths of light is still in its infancy. In particular, the design
of photochemically triggered-orthogonal systems integrated into solid materials
that enable multiple dynamic control over their properties remains a longstanding
challenge. Here, we report the orthogonal and reversible control of two types
of photoswitches in an integrated solid porous framework, that is, visible-light
responsive o-fluoroazobenzene and nitro-spiropyran motifs. The properties of the
constructed material can be selectively controlled by different wavelengths of
light thus generating four distinct states providing a basis for dynamic multifunctional
materials. Solid-state NMR spectroscopy demonstrated the selective transformation
of the azobenzene switch in the bulk, which in turn modulates N2 and CO2 adsorption.
acknowledgement: 'This work was supported from the following sources: China Scholarship
Council (CSC PhD Fellowship No. 201808330459 to J.S.), the Ministry of Education,
Culture and Science of the Netherlands (Gravitation Program No. 024.001.035 to BLF),
Financial support from The Netherlands Organization for Scientific Research (NWO-CW),
the European Research Council (ERC; advanced Grant No. 694345 to B.L.F.). PRIN (SHERPA
2020 No. H45F21003430001) and PRIN (HySTAR 2022 No. H53D23004720006) and Lombardy
Region for “Enhancing Photosynthesis” grant (2021-2023 No. H45F21002830007). W.D.
is grateful for financial support from Marie Skłodowska-Curie Actions (Individual
Fellowship No. 101027639). P.C. is grateful for the financial support provided by
the PRELUDIUM grant from the National Science Center Poland (Reg. No: 2023/49/N/ST5/01864).'
article_number: e202404878
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jinyu
full_name: Sheng, Jinyu
id: 639f0526-27c9-11ee-95a6-966cd7f102d8
last_name: Sheng
- first_name: Jacopo
full_name: Perego, Jacopo
last_name: Perego
- first_name: Silvia
full_name: Bracco, Silvia
last_name: Bracco
- first_name: Piotr
full_name: Cieciórski, Piotr
last_name: Cieciórski
- first_name: Wojciech
full_name: Danowski, Wojciech
last_name: Danowski
- first_name: Angiolina
full_name: Comotti, Angiolina
last_name: Comotti
- first_name: Ben L.
full_name: Feringa, Ben L.
last_name: Feringa
citation:
ama: Sheng J, Perego J, Bracco S, et al. Orthogonal photoswitching in a porous organic
framework. Angewandte Chemie International Edition. 2024;63(23). doi:10.1002/anie.202404878
apa: Sheng, J., Perego, J., Bracco, S., Cieciórski, P., Danowski, W., Comotti, A.,
& Feringa, B. L. (2024). Orthogonal photoswitching in a porous organic framework.
Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.202404878
chicago: Sheng, Jinyu, Jacopo Perego, Silvia Bracco, Piotr Cieciórski, Wojciech
Danowski, Angiolina Comotti, and Ben L. Feringa. “Orthogonal Photoswitching in
a Porous Organic Framework.” Angewandte Chemie International Edition. Wiley,
2024. https://doi.org/10.1002/anie.202404878.
ieee: J. Sheng et al., “Orthogonal photoswitching in a porous organic framework,”
Angewandte Chemie International Edition, vol. 63, no. 23. Wiley, 2024.
ista: Sheng J, Perego J, Bracco S, Cieciórski P, Danowski W, Comotti A, Feringa
BL. 2024. Orthogonal photoswitching in a porous organic framework. Angewandte
Chemie International Edition. 63(23), e202404878.
mla: Sheng, Jinyu, et al. “Orthogonal Photoswitching in a Porous Organic Framework.”
Angewandte Chemie International Edition, vol. 63, no. 23, e202404878, Wiley,
2024, doi:10.1002/anie.202404878.
short: J. Sheng, J. Perego, S. Bracco, P. Cieciórski, W. Danowski, A. Comotti, B.L.
Feringa, Angewandte Chemie International Edition 63 (2024).
date_created: 2024-06-03T09:00:01Z
date_published: 2024-03-26T00:00:00Z
date_updated: 2025-04-23T07:48:28Z
day: '26'
ddc:
- '540'
department:
- _id: RaKl
doi: 10.1002/anie.202404878
external_id:
pmid:
- '38530132'
file:
- access_level: open_access
checksum: 7ecb0892051f6ed8f6a6f25baa47543a
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T10:33:17Z
date_updated: 2024-06-03T10:33:17Z
file_id: '17107'
file_name: 2024_AngChemieInt_Sheng.pdf
file_size: 2363206
relation: main_file
success: 1
file_date_updated: 2024-06-03T10:33:17Z
has_accepted_license: '1'
intvolume: ' 63'
issue: '23'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Orthogonal photoswitching in a porous organic framework
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 63
year: '2024'
...
---
_id: '17122'
abstract:
- lang: eng
text: "Background: Motor alterations and lowered physical activity are common in
affective disorders. Previous research has indicated a link between depressive
symptoms and declining muscle strength primarily focusing on the elderly but not
younger individuals. Thus, we aimed to evaluate the relationship between mood
and muscle strength in a sample of N = 73 young to middle-aged hospitalized patients
(18–49 years, mean age 30.7 years) diagnosed with major depressive, bipolar and
schizoaffective disorder, with a focus on moderating effects of psychopharmacotherapy.
The study was carried out as a prospective observational study at a German psychiatric
university hospital between September 2021 and March 2022.\r\nMethods: Employing
a standardized strength circuit consisting of computerized strength training devices,
we measured the maximal muscle strength (Fmax) using three repetitions maximum
across four muscle regions (abdomen, arm, back, leg) at three time points (t1-t3)
over four weeks accompanied by psychometric testing (MADRS, BPRS, YRMS) and blood
lipid profiling in a clinical setting. For analysis of psychopharmacotherapy,
medication was split into activating (AM) and inhibiting (IM) medication and dosages
were normalized by the respective WHO defined daily dose.\r\nResults: While we
observed a significant decrease of the MADRS score and increase of the relative
total Fmax (rTFmax) in the first two weeks (t1-t2) but not later (both p < .001),
we did not reveal a significant bivariate correlation between disease severity
(MADRS) and muscle strength (rTFmax) at any of the timepoints. Individuals with
longer disease history displayed reduced rTFmax (p = .048). IM was significantly
associated with decreased rTFmax (p = .032). Regression models provide a more
substantial effect of gender, age, and IM on muscle strength than the depressive
episode itself (p < .001).\r\nConclusions: The results of the study indicate that
disease severity and muscle strength are not associated in young to middle-aged
inpatients with affective disorders using a strength circuit as observational
measurement. Future research will be needed to differentiate the effect of medication,
gender, and age on muscle strength and to develop interventions for prevention
of muscle weakness, especially in younger patients with chronic affective illnesses."
acknowledgement: "This work was supported by the project ‘Fellows Ride’ of the Thomas
Lurz und Dieter Schneider Stiftung and by the ‘Würzburger Bündnis gegen Depression’
(to S.K.-S).\r\nOpen Access funding enabled and organized by Projekt DEAL."
article_number: '401'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Hannah
full_name: Ramming, Hannah
last_name: Ramming
- first_name: Linda
full_name: Theuerkauf, Linda
last_name: Theuerkauf
- first_name: Olaf
full_name: Hoos, Olaf
last_name: Hoos
- first_name: Katharina
full_name: Lichter, Katharina
id: 39302e62-fcfc-11ec-8196-8b01447dbd3d
last_name: Lichter
orcid: 0000-0002-1485-0351
- first_name: Sarah
full_name: Kittel-Schneider, Sarah
last_name: Kittel-Schneider
citation:
ama: Ramming H, Theuerkauf L, Hoos O, Lichter K, Kittel-Schneider S. The association
between maximal muscle strength, disease severity and psychopharmacotherapy among
young to middle-aged inpatients with affective disorders – a prospective pilot
study. BMC Psychiatry. 2024;24. doi:10.1186/s12888-024-05849-2
apa: Ramming, H., Theuerkauf, L., Hoos, O., Lichter, K., & Kittel-Schneider,
S. (2024). The association between maximal muscle strength, disease severity and
psychopharmacotherapy among young to middle-aged inpatients with affective disorders
– a prospective pilot study. BMC Psychiatry. Springer Nature. https://doi.org/10.1186/s12888-024-05849-2
chicago: Ramming, Hannah, Linda Theuerkauf, Olaf Hoos, Katharina Lichter, and Sarah
Kittel-Schneider. “The Association between Maximal Muscle Strength, Disease Severity
and Psychopharmacotherapy among Young to Middle-Aged Inpatients with Affective
Disorders – a Prospective Pilot Study.” BMC Psychiatry. Springer Nature,
2024. https://doi.org/10.1186/s12888-024-05849-2.
ieee: H. Ramming, L. Theuerkauf, O. Hoos, K. Lichter, and S. Kittel-Schneider, “The
association between maximal muscle strength, disease severity and psychopharmacotherapy
among young to middle-aged inpatients with affective disorders – a prospective
pilot study,” BMC Psychiatry, vol. 24. Springer Nature, 2024.
ista: Ramming H, Theuerkauf L, Hoos O, Lichter K, Kittel-Schneider S. 2024. The
association between maximal muscle strength, disease severity and psychopharmacotherapy
among young to middle-aged inpatients with affective disorders – a prospective
pilot study. BMC Psychiatry. 24, 401.
mla: Ramming, Hannah, et al. “The Association between Maximal Muscle Strength, Disease
Severity and Psychopharmacotherapy among Young to Middle-Aged Inpatients with
Affective Disorders – a Prospective Pilot Study.” BMC Psychiatry, vol.
24, 401, Springer Nature, 2024, doi:10.1186/s12888-024-05849-2.
short: H. Ramming, L. Theuerkauf, O. Hoos, K. Lichter, S. Kittel-Schneider, BMC
Psychiatry 24 (2024).
date_created: 2024-06-09T22:01:01Z
date_published: 2024-05-29T00:00:00Z
date_updated: 2025-04-23T07:51:51Z
day: '29'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1186/s12888-024-05849-2
external_id:
pmid:
- '38811916'
file:
- access_level: open_access
checksum: 5df60d3c9388955c5b682ea34748d59d
content_type: application/pdf
creator: dernst
date_created: 2024-06-10T10:44:26Z
date_updated: 2024-06-10T10:44:26Z
file_id: '17131'
file_name: 2024_BMCPsychiatry_Ramming.pdf
file_size: 2320147
relation: main_file
success: 1
file_date_updated: 2024-06-10T10:44:26Z
has_accepted_license: '1'
intvolume: ' 24'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: BMC Psychiatry
publication_identifier:
eissn:
- 1471-244X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The association between maximal muscle strength, disease severity and psychopharmacotherapy
among young to middle-aged inpatients with affective disorders – a prospective pilot
study
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2024'
...
---
APC_amount: 2570,79 EUR
OA_place: publisher
OA_type: hybrid
_id: '17123'
abstract:
- lang: eng
text: A key feature of many developmental systems is their ability to self-organize
spatial patterns of functionally distinct cell fates. To ensure proper biological
function, such patterns must be established reproducibly, by controlling and even
harnessing intrinsic and extrinsic fluctuations. While the relevant molecular
processes are increasingly well understood, we lack a principled framework to
quantify the performance of such stochastic self-organizing systems. To that end,
we introduce an information-theoretic measure for self-organized fate specification
during embryonic development. We show that the proposed measure assesses the total
information content of fate patterns and decomposes it into interpretable contributions
corresponding to the positional and correlational information. By optimizing the
proposed measure, our framework provides a normative theory for developmental
circuits, which we demonstrate on lateral inhibition, cell type proportioning,
and reaction–diffusion models of self-organization. This paves a way toward a
classification of developmental systems based on a common information-theoretic
language, thereby organizing the zoo of implicated chemical and mechanical signaling
processes.
acknowledgement: We thank Wiktor Młynarski, Juraj Majek, Michal Hledík, Fridtjof Brauns,
Nikolas Claussen, Benjamin Zoller, Erwin Frey, Thomas Gregor, and Edouard Hannezo
for inspiring discussions. D.B.B. was supported by the NOMIS foundation as a NOMIS
Fellow and by an European Molecular Biology Organization (EMBO) Postdoctoral Fellowship
(ALTF 343-2022). This research was performed in part at the Aspen Center for Physics,
which is supported by NSF Grant No. PHY-1607611, and Kavli Institute for Theoretical
Physics (KITP) Santa Barbara, supported by NSF Grant No. PHY-1748958 and the Gordon
and Betty Moore Foundation Grant No. 2919.02.
article_number: e2322326121
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: David
full_name: Brückner, David
id: e1e86031-6537-11eb-953a-f7ab92be508d
last_name: Brückner
orcid: 0000-0001-7205-2975
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
citation:
ama: Brückner D, Tkačik G. Information content and optimization of self-organized
developmental systems. Proceedings of the National Academy of Sciences of the
United States of America. 2024;121(23). doi:10.1073/pnas.2322326121
apa: Brückner, D., & Tkačik, G. (2024). Information content and optimization
of self-organized developmental systems. Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences.
https://doi.org/10.1073/pnas.2322326121
chicago: Brückner, David, and Gašper Tkačik. “Information Content and Optimization
of Self-Organized Developmental Systems.” Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences,
2024. https://doi.org/10.1073/pnas.2322326121.
ieee: D. Brückner and G. Tkačik, “Information content and optimization of self-organized
developmental systems,” Proceedings of the National Academy of Sciences of
the United States of America, vol. 121, no. 23. National Academy of Sciences,
2024.
ista: Brückner D, Tkačik G. 2024. Information content and optimization of self-organized
developmental systems. Proceedings of the National Academy of Sciences of the
United States of America. 121(23), e2322326121.
mla: Brückner, David, and Gašper Tkačik. “Information Content and Optimization of
Self-Organized Developmental Systems.” Proceedings of the National Academy
of Sciences of the United States of America, vol. 121, no. 23, e2322326121,
National Academy of Sciences, 2024, doi:10.1073/pnas.2322326121.
short: D. Brückner, G. Tkačik, Proceedings of the National Academy of Sciences of
the United States of America 121 (2024).
corr_author: '1'
date_created: 2024-06-09T22:01:02Z
date_published: 2024-06-04T00:00:00Z
date_updated: 2025-09-08T07:51:01Z
day: '04'
ddc:
- '570'
department:
- _id: EdHa
- _id: GaTk
doi: 10.1073/pnas.2322326121
external_id:
isi:
- '001244835000006'
pmid:
- '38819997'
file:
- access_level: open_access
checksum: 59797a75db7beb3721ed7a4d14c241f9
content_type: application/pdf
creator: dernst
date_created: 2024-06-10T10:27:37Z
date_updated: 2024-06-10T10:27:37Z
file_id: '17130'
file_name: 2024_PNAS_Brueckner.pdf
file_size: 12329234
relation: main_file
success: 1
file_date_updated: 2024-06-10T10:27:37Z
has_accepted_license: '1'
intvolume: ' 121'
isi: 1
issue: '23'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
grant_number: ALTF 343-2022
name: A mechano-chemical theory for stem cell fate decisions in organoid development
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/dbrueckner/SelforgInformation
- description: News on the ISTA website
relation: press_release
url: https://ista.ac.at/en/news/the-embryo-assembles-itself/
scopus_import: '1'
status: public
title: Information content and optimization of self-organized developmental systems
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 121
year: '2024'
...
---
APC_amount: 4394,84 EUR
OA_place: publisher
OA_type: hybrid
_id: '17124'
abstract:
- lang: eng
text: 'In recent years, solution processes have gained considerable traction as
a cost-effective and scalable method to produce high-performance thermoelectric
materials. The process entails a series of critical steps: synthesis, purification,
thermal treatments, and consolidation, each playing a pivotal role in determining
performance, stability, and reproducibility. We have noticed a need for more comprehensive
details for each of the described steps in most published works. Recognizing the
significance of detailed synthetic protocols, we describe here the approach used
to synthesize and characterize one of the highest-performing polycrystalline p-type
SnSe. In particular, we report the synthesis of SnSe particles in water and the
subsequent surface treatment with CdSe molecular complexes that yields CdSe-SnSe
nanocomposites upon consolidation. Moreover, the surface treatment inhibits grain
growth through Zenner pinning of secondary phase CdSe nanoparticles and enhances
defect formation at different length scales. The enhanced complexity in the CdSe-SnSe
nanocomposite microstructure with respect to SnSe promotes phonon scattering and
thereby significantly reduces the thermal conductivity. Such surface engineering
provides opportunities in solution processing for introducing and controlling
defects, making it possible to optimize the transport properties and attain a
high thermoelectric figure of merit.'
acknowledged_ssus:
- _id: EM-Fac
- _id: LifeSc
acknowledgement: The Scientific Service Units (SSU) of ISTA supported this research
through resources provided by the Electron Microscopy Facility (EMF) and the Lab
Support Facility (LSF). This work was financially supported by the Institute of
Science and Technology Austria and the Werner Siemens Foundation.
article_number: e66278
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Christine
full_name: Fiedler, Christine
id: bd3fceba-dc74-11ea-a0a7-c17f71817366
last_name: Fiedler
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
citation:
ama: Fiedler C, Liu Y, Ibáñez M. Solution-processed, surface-engineered, polycrystalline
CdSe-SnSe exhibiting low thermal conductivity. Journal of Visualized Experiments.
2024;2024(207). doi:10.3791/66278
apa: Fiedler, C., Liu, Y., & Ibáñez, M. (2024). Solution-processed, surface-engineered,
polycrystalline CdSe-SnSe exhibiting low thermal conductivity. Journal of Visualized
Experiments. MyJove Corporation. https://doi.org/10.3791/66278
chicago: Fiedler, Christine, Yu Liu, and Maria Ibáñez. “Solution-Processed, Surface-Engineered,
Polycrystalline CdSe-SnSe Exhibiting Low Thermal Conductivity.” Journal of
Visualized Experiments. MyJove Corporation, 2024. https://doi.org/10.3791/66278.
ieee: C. Fiedler, Y. Liu, and M. Ibáñez, “Solution-processed, surface-engineered,
polycrystalline CdSe-SnSe exhibiting low thermal conductivity,” Journal of
Visualized Experiments, vol. 2024, no. 207. MyJove Corporation, 2024.
ista: Fiedler C, Liu Y, Ibáñez M. 2024. Solution-processed, surface-engineered,
polycrystalline CdSe-SnSe exhibiting low thermal conductivity. Journal of Visualized
Experiments. 2024(207), e66278.
mla: Fiedler, Christine, et al. “Solution-Processed, Surface-Engineered, Polycrystalline
CdSe-SnSe Exhibiting Low Thermal Conductivity.” Journal of Visualized Experiments,
vol. 2024, no. 207, e66278, MyJove Corporation, 2024, doi:10.3791/66278.
short: C. Fiedler, Y. Liu, M. Ibáñez, Journal of Visualized Experiments 2024 (2024).
corr_author: '1'
date_created: 2024-06-09T22:01:02Z
date_published: 2024-05-01T00:00:00Z
date_updated: 2025-09-08T07:51:46Z
day: '01'
ddc:
- '530'
department:
- _id: MaIb
doi: 10.3791/66278
external_id:
isi:
- '001281657200005'
pmid:
- '38829127'
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date_created: 2025-02-17T15:08:55Z
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intvolume: ' 2024'
isi: 1
issue: '207'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/3.0/
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
Semiconductors for Waste Heat Recovery'
publication: Journal of Visualized Experiments
publication_identifier:
issn:
- 1940-087X
publication_status: published
publisher: MyJove Corporation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Solution-processed, surface-engineered, polycrystalline CdSe-SnSe exhibiting
low thermal conductivity
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND
3.0)
short: CC BY-NC-ND (3.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2024
year: '2024'
...
---
OA_type: closed access
_id: '17125'
abstract:
- lang: eng
text: We explore the potential of nanocrystals (a term used equivalently to nanoparticles)
as building blocks for nanomaterials, and the current advances and open challenges
for fundamental science developments and applications. Nanocrystal assemblies
are inherently multiscale, and the generation of revolutionary material properties
requires a precise understanding of the relationship between structure and function,
the former being determined by classical effects and the latter often by quantum
effects. With an emphasis on theory and computation, we discuss challenges that
hamper current assembly strategies and to what extent nanocrystal assemblies represent
thermodynamic equilibrium or kinetically trapped metastable states. We also examine
dynamic effects and optimization of assembly protocols. Finally, we discuss promising
material functions and examples of their realization with nanocrystal assemblies.
acknowledgement: This research was supported in part by the National Science Foundation
under Grant No. NSF PHY-1748958 to the Kavli Institute for Theoretical Physics.
The biophysics part of this paper was supported in part by the Gordon and Betty
Moore Foundation Grant No. 2919.02. CLB acknowledges the sponsorship of the Alexander
von Humboldt Foundation through the Humboldt Research Fellowship for postdoctoral
researchers, and the support of the Emerging Talents Initiative (ETI) and the EAM
Starting Grant (EAM-SG23-1) of the Competence Center Engineering of Advanced Materials
of the Friedrich-Alexander-Universität Erlangen-Nürnberg. CLB and ME acknowledge
the support of the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
Project-ID 416229255-SFB 1411. The research of AT was supported by the U.S. Department
of Energy (U.S. DOE), Office of Basic Energy Sciences, Division of Materials Sciences
and Engineering. Iowa State University operates Ames National Laboratory for the
U.S. DOE under Contract DE-AC02-07CH11358.
article_processing_charge: No
article_type: review
author:
- first_name: Carlos L.
full_name: Bassani, Carlos L.
last_name: Bassani
- first_name: Greg
full_name: Van Anders, Greg
last_name: Van Anders
- first_name: Uri
full_name: Banin, Uri
last_name: Banin
- first_name: Dmitry
full_name: Baranov, Dmitry
last_name: Baranov
- first_name: Qian
full_name: Chen, Qian
last_name: Chen
- first_name: Marjolein
full_name: Dijkstra, Marjolein
last_name: Dijkstra
- first_name: Michael S.
full_name: Dimitriyev, Michael S.
last_name: Dimitriyev
- first_name: Efi
full_name: Efrati, Efi
last_name: Efrati
- first_name: Jordi
full_name: Faraudo, Jordi
last_name: Faraudo
- first_name: Oleg
full_name: Gang, Oleg
last_name: Gang
- first_name: Nicola
full_name: Gaston, Nicola
last_name: Gaston
- first_name: Ramin
full_name: Golestanian, Ramin
last_name: Golestanian
- first_name: G. Ivan
full_name: Guerrero-Garcia, G. Ivan
last_name: Guerrero-Garcia
- first_name: Michael
full_name: Gruenwald, Michael
last_name: Gruenwald
- first_name: Amir
full_name: Haji-Akbari, Amir
last_name: Haji-Akbari
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Matthias
full_name: Karg, Matthias
last_name: Karg
- first_name: Tobias
full_name: Kraus, Tobias
last_name: Kraus
- first_name: Byeongdu
full_name: Lee, Byeongdu
last_name: Lee
- first_name: Reid C.
full_name: Van Lehn, Reid C.
last_name: Van Lehn
- first_name: Robert J.
full_name: Macfarlane, Robert J.
last_name: Macfarlane
- first_name: Bortolo M.
full_name: Mognetti, Bortolo M.
last_name: Mognetti
- first_name: Arash
full_name: Nikoubashman, Arash
last_name: Nikoubashman
- first_name: Saeed
full_name: Osat, Saeed
last_name: Osat
- first_name: Oleg V.
full_name: Prezhdo, Oleg V.
last_name: Prezhdo
- first_name: Grant M.
full_name: Rotskoff, Grant M.
last_name: Rotskoff
- first_name: Leonor
full_name: Saiz, Leonor
last_name: Saiz
- first_name: An Chang
full_name: Shi, An Chang
last_name: Shi
- first_name: Sara
full_name: Skrabalak, Sara
last_name: Skrabalak
- first_name: Ivan I.
full_name: Smalyukh, Ivan I.
last_name: Smalyukh
- first_name: Mario
full_name: Tagliazucchi, Mario
last_name: Tagliazucchi
- first_name: Dmitri V.
full_name: Talapin, Dmitri V.
last_name: Talapin
- first_name: Alexei V.
full_name: Tkachenko, Alexei V.
last_name: Tkachenko
- first_name: Sergei
full_name: Tretiak, Sergei
last_name: Tretiak
- first_name: David
full_name: Vaknin, David
last_name: Vaknin
- first_name: Asaph
full_name: Widmer-Cooper, Asaph
last_name: Widmer-Cooper
- first_name: Gerard C.L.
full_name: Wong, Gerard C.L.
last_name: Wong
- first_name: Xingchen
full_name: Ye, Xingchen
last_name: Ye
- first_name: Shan
full_name: Zhou, Shan
last_name: Zhou
- first_name: Eran
full_name: Rabani, Eran
last_name: Rabani
- first_name: Michael
full_name: Engel, Michael
last_name: Engel
- first_name: Alex
full_name: Travesset, Alex
last_name: Travesset
citation:
ama: 'Bassani CL, Van Anders G, Banin U, et al. Nanocrystal assemblies: Current
advances and open problems. ACS Nano. 2024;18(23):14791-14840. doi:10.1021/acsnano.3c10201'
apa: 'Bassani, C. L., Van Anders, G., Banin, U., Baranov, D., Chen, Q., Dijkstra,
M., … Travesset, A. (2024). Nanocrystal assemblies: Current advances and open
problems. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.3c10201'
chicago: 'Bassani, Carlos L., Greg Van Anders, Uri Banin, Dmitry Baranov, Qian Chen,
Marjolein Dijkstra, Michael S. Dimitriyev, et al. “Nanocrystal Assemblies: Current
Advances and Open Problems.” ACS Nano. American Chemical Society, 2024.
https://doi.org/10.1021/acsnano.3c10201.'
ieee: 'C. L. Bassani et al., “Nanocrystal assemblies: Current advances and
open problems,” ACS Nano, vol. 18, no. 23. American Chemical Society, pp.
14791–14840, 2024.'
ista: 'Bassani CL, Van Anders G, Banin U, Baranov D, Chen Q, Dijkstra M, Dimitriyev
MS, Efrati E, Faraudo J, Gang O, Gaston N, Golestanian R, Guerrero-Garcia GI,
Gruenwald M, Haji-Akbari A, Ibáñez M, Karg M, Kraus T, Lee B, Van Lehn RC, Macfarlane
RJ, Mognetti BM, Nikoubashman A, Osat S, Prezhdo OV, Rotskoff GM, Saiz L, Shi
AC, Skrabalak S, Smalyukh II, Tagliazucchi M, Talapin DV, Tkachenko AV, Tretiak
S, Vaknin D, Widmer-Cooper A, Wong GCL, Ye X, Zhou S, Rabani E, Engel M, Travesset
A. 2024. Nanocrystal assemblies: Current advances and open problems. ACS Nano.
18(23), 14791–14840.'
mla: 'Bassani, Carlos L., et al. “Nanocrystal Assemblies: Current Advances and Open
Problems.” ACS Nano, vol. 18, no. 23, American Chemical Society, 2024,
pp. 14791–840, doi:10.1021/acsnano.3c10201.'
short: C.L. Bassani, G. Van Anders, U. Banin, D. Baranov, Q. Chen, M. Dijkstra,
M.S. Dimitriyev, E. Efrati, J. Faraudo, O. Gang, N. Gaston, R. Golestanian, G.I.
Guerrero-Garcia, M. Gruenwald, A. Haji-Akbari, M. Ibáñez, M. Karg, T. Kraus, B.
Lee, R.C. Van Lehn, R.J. Macfarlane, B.M. Mognetti, A. Nikoubashman, S. Osat,
O.V. Prezhdo, G.M. Rotskoff, L. Saiz, A.C. Shi, S. Skrabalak, I.I. Smalyukh, M.
Tagliazucchi, D.V. Talapin, A.V. Tkachenko, S. Tretiak, D. Vaknin, A. Widmer-Cooper,
G.C.L. Wong, X. Ye, S. Zhou, E. Rabani, M. Engel, A. Travesset, ACS Nano 18 (2024)
14791–14840.
date_created: 2024-06-09T22:01:02Z
date_published: 2024-05-30T00:00:00Z
date_updated: 2025-09-08T07:52:37Z
day: '30'
department:
- _id: MaIb
doi: 10.1021/acsnano.3c10201
external_id:
isi:
- '001236199900001'
pmid:
- '38814908'
intvolume: ' 18'
isi: 1
issue: '23'
language:
- iso: eng
month: '05'
oa_version: None
page: 14791-14840
pmid: 1
publication: ACS Nano
publication_identifier:
eissn:
- 1936-086X
issn:
- 1936-0851
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Nanocrystal assemblies: Current advances and open problems'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 18
year: '2024'
...
---
_id: '17126'
abstract:
- lang: eng
text: "Functional encryption (FE) is a primitive where the holder of a master secret
key can control which functions a user can evaluate on encrypted data. It is a
powerful primitive that even implies indistinguishability obfuscation (iO), given
sufficiently compact ciphertexts (Ananth-Jain, CRYPTO’15 and Bitansky-Vaikuntanathan,
FOCS’15). However, despite being extensively studied, there are FE schemes, such
as function-hiding inner-product FE (Bishop-Jain-Kowalczyk, AC’15, Abdalla-Catalano-Fiore-Gay-Ursu,
CRYPTO’18) and compact quadratic FE (Baltico-Catalano-Fiore-Gay, Lin, CRYPTO’17),
that can be only realized using pairings. This raises the question if there are
some mathematical barriers that hinder us from realizing these FE schemes from
other assumptions.\r\n\r\nIn this paper, we study the difficulty of constructing
lattice-based compact FE. We generalize the impossibility results of Ünal (EC’20)
for lattice-based function-hiding FE, and extend it to the case of compact FE.
Concretely, we prove lower bounds for lattice-based compact FE schemes which meet
some (natural) algebraic restrictions at encryption and decryption, and have ciphertexts
of linear size and secret keys of minimal degree. We see our results as important
indications of why it is hard to construct lattice-based FE schemes for new functionalities,
and which mathematical barriers have to be overcome."
acknowledgement: We want to thank the anonymous reviewers of TCC and Eurocrypt for
their very helpful comments and suggestions. This work has received funding from
the Austrian Science Fund (FWF) and netidee SCIENCE via grant P31621-N38 (PROFET).
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Erkan
full_name: Tairi, Erkan
last_name: Tairi
- first_name: Akin
full_name: Ünal, Akin
id: f6b56fb6-dc63-11ee-9dbf-f6780863a85a
last_name: Ünal
orcid: 0000-0002-8929-0221
citation:
ama: 'Tairi E, Ünal A. Lower bounds for lattice-based compact functional encryption.
In: Advances in Cryptology – EUROCRYPT 2024. Vol 14652. Springer Nature;
2024:249-279. doi:10.1007/978-3-031-58723-8_9'
apa: 'Tairi, E., & Ünal, A. (2024). Lower bounds for lattice-based compact functional
encryption. In Advances in Cryptology – EUROCRYPT 2024 (Vol. 14652, pp.
249–279). Zurich, Switzerland: Springer Nature. https://doi.org/10.1007/978-3-031-58723-8_9'
chicago: Tairi, Erkan, and Akin Ünal. “Lower Bounds for Lattice-Based Compact Functional
Encryption.” In Advances in Cryptology – EUROCRYPT 2024, 14652:249–79.
Springer Nature, 2024. https://doi.org/10.1007/978-3-031-58723-8_9.
ieee: E. Tairi and A. Ünal, “Lower bounds for lattice-based compact functional encryption,”
in Advances in Cryptology – EUROCRYPT 2024, Zurich, Switzerland, 2024,
vol. 14652, pp. 249–279.
ista: 'Tairi E, Ünal A. 2024. Lower bounds for lattice-based compact functional
encryption. Advances in Cryptology – EUROCRYPT 2024. EUROCRYPT: Theory and Applications
of Cryptographic Techniques, LNCS, vol. 14652, 249–279.'
mla: Tairi, Erkan, and Akin Ünal. “Lower Bounds for Lattice-Based Compact Functional
Encryption.” Advances in Cryptology – EUROCRYPT 2024, vol. 14652, Springer
Nature, 2024, pp. 249–79, doi:10.1007/978-3-031-58723-8_9.
short: E. Tairi, A. Ünal, in:, Advances in Cryptology – EUROCRYPT 2024, Springer
Nature, 2024, pp. 249–279.
conference:
end_date: 2024-05-30
location: Zurich, Switzerland
name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
start_date: 2024-05-26
date_created: 2024-06-09T22:01:03Z
date_published: 2024-05-08T00:00:00Z
date_updated: 2025-09-08T07:48:18Z
day: '08'
department:
- _id: KrPi
doi: 10.1007/978-3-031-58723-8_9
external_id:
isi:
- '001278247600009'
intvolume: ' 14652'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2023/719.pdf
month: '05'
oa: 1
oa_version: Submitted Version
page: 249-279
publication: Advances in Cryptology – EUROCRYPT 2024
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783031587221'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lower bounds for lattice-based compact functional encryption
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14652
year: '2024'
...