---
OA_place: publisher
OA_type: hybrid
_id: '18587'
abstract:
- lang: eng
  text: Many scientific breakthroughs have depended on animal research, yet the ethical
    concerns surrounding the use of animals in experimentation have long prompted
    discussions about humane treatment and responsible scientific practice. First
    articulated by Russell and Burch, the 3Rs Principles of Replacement, Reduction,
    and Refinement have gained widespread recognition as basic guidelines for animal
    research. Over time, the 3Rs have transcended the research community, influencing
    policy decisions, animal welfare advocacy and public perception of animal experimentation.
    Despite their broad acceptance, interpretations of the 3Rs vary substantially,
    shaping statutory frameworks at various levels, with both technical and practical
    impacts.
acknowledgement: This publication is based upon work from the Ethics Crossover Group
  within the COST Action IMPROVE (“3Rs concepts to improve the quality of biomedical
  science”), CA21139, supported by COST (European Cooperation in Science and Technology).
  We acknowledge the input and advice from Dr. Susanna Louhimies.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Jan
  full_name: Lauwereyns, Jan
  last_name: Lauwereyns
- first_name: Jeffrey
  full_name: Bajramovic, Jeffrey
  last_name: Bajramovic
- first_name: Bettina
  full_name: Bert, Bettina
  last_name: Bert
- first_name: Samuel
  full_name: Camenzind, Samuel
  last_name: Camenzind
- first_name: Joery
  full_name: De Kock, Joery
  last_name: De Kock
- first_name: Alisa
  full_name: Elezović, Alisa
  last_name: Elezović
- first_name: Sevilay
  full_name: Erden, Sevilay
  last_name: Erden
- first_name: Fernando
  full_name: Gonzalez-Uarquin, Fernando
  last_name: Gonzalez-Uarquin
- first_name: Yesim Isil
  full_name: Ulman, Yesim Isil
  last_name: Ulman
- first_name: Orsolya Ivett
  full_name: Hoffmann, Orsolya Ivett
  last_name: Hoffmann
- first_name: Maria
  full_name: Kitsara, Maria
  last_name: Kitsara
- first_name: Nikolaos
  full_name: Kostomitsopoulos, Nikolaos
  last_name: Kostomitsopoulos
- first_name: Winfried
  full_name: Neuhaus, Winfried
  last_name: Neuhaus
- first_name: Benoit
  full_name: Petit-Demouliere, Benoit
  last_name: Petit-Demouliere
- first_name: Simone
  full_name: Pollo, Simone
  last_name: Pollo
- first_name: Brígida
  full_name: Riso, Brígida
  last_name: Riso
- first_name: Sophie
  full_name: Schober, Sophie
  id: 80b0a0ef-4b9f-11ec-b119-8d9d94c4a1d8
  last_name: Schober
- first_name: Athanassia
  full_name: Sotiropoulos, Athanassia
  last_name: Sotiropoulos
- first_name: Aurélie
  full_name: Thomas, Aurélie
  last_name: Thomas
- first_name: Augusto
  full_name: Vitale, Augusto
  last_name: Vitale
- first_name: Doris
  full_name: Wilflingseder, Doris
  last_name: Wilflingseder
- first_name: Arti
  full_name: Ahluwalia, Arti
  last_name: Ahluwalia
citation:
  ama: Lauwereyns J, Bajramovic J, Bert B, et al. Toward a common interpretation of
    the 3Rs principles in animal research. <i>Lab Animal</i>. 2024;53:347-350. doi:<a
    href="https://doi.org/10.1038/s41684-024-01476-2">10.1038/s41684-024-01476-2</a>
  apa: Lauwereyns, J., Bajramovic, J., Bert, B., Camenzind, S., De Kock, J., Elezović,
    A., … Ahluwalia, A. (2024). Toward a common interpretation of the 3Rs principles
    in animal research. <i>Lab Animal</i>. Springer Nature. <a href="https://doi.org/10.1038/s41684-024-01476-2">https://doi.org/10.1038/s41684-024-01476-2</a>
  chicago: Lauwereyns, Jan, Jeffrey Bajramovic, Bettina Bert, Samuel Camenzind, Joery
    De Kock, Alisa Elezović, Sevilay Erden, et al. “Toward a Common Interpretation
    of the 3Rs Principles in Animal Research.” <i>Lab Animal</i>. Springer Nature,
    2024. <a href="https://doi.org/10.1038/s41684-024-01476-2">https://doi.org/10.1038/s41684-024-01476-2</a>.
  ieee: J. Lauwereyns <i>et al.</i>, “Toward a common interpretation of the 3Rs principles
    in animal research,” <i>Lab Animal</i>, vol. 53. Springer Nature, pp. 347–350,
    2024.
  ista: Lauwereyns J, Bajramovic J, Bert B, Camenzind S, De Kock J, Elezović A, Erden
    S, Gonzalez-Uarquin F, Ulman YI, Hoffmann OI, Kitsara M, Kostomitsopoulos N, Neuhaus
    W, Petit-Demouliere B, Pollo S, Riso B, Schober S, Sotiropoulos A, Thomas A, Vitale
    A, Wilflingseder D, Ahluwalia A. 2024. Toward a common interpretation of the 3Rs
    principles in animal research. Lab Animal. 53, 347–350.
  mla: Lauwereyns, Jan, et al. “Toward a Common Interpretation of the 3Rs Principles
    in Animal Research.” <i>Lab Animal</i>, vol. 53, Springer Nature, 2024, pp. 347–50,
    doi:<a href="https://doi.org/10.1038/s41684-024-01476-2">10.1038/s41684-024-01476-2</a>.
  short: J. Lauwereyns, J. Bajramovic, B. Bert, S. Camenzind, J. De Kock, A. Elezović,
    S. Erden, F. Gonzalez-Uarquin, Y.I. Ulman, O.I. Hoffmann, M. Kitsara, N. Kostomitsopoulos,
    W. Neuhaus, B. Petit-Demouliere, S. Pollo, B. Riso, S. Schober, A. Sotiropoulos,
    A. Thomas, A. Vitale, D. Wilflingseder, A. Ahluwalia, Lab Animal 53 (2024) 347–350.
date_created: 2024-11-24T23:01:49Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2025-09-08T14:50:31Z
day: '01'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.1038/s41684-024-01476-2
external_id:
  isi:
  - '001355264100001'
  pmid:
  - '39548348'
file:
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intvolume: '        53'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 347-350
pmid: 1
publication: Lab Animal
publication_identifier:
  eissn:
  - 1548-4475
  issn:
  - 0093-7355
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toward a common interpretation of the 3Rs principles in animal research
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 53
year: '2024'
...
---
OA_place: publisher
_id: '18588'
abstract:
- lang: eng
  text: "This thesis is an experimental work about two distinct research projects
    that evolved from a single project: non-equilibrium dynamics of an acoustically
    vibrated particle and microfabrication of particles with nano-scale 3D printing.
    The first project explores non equilibrium dynamics of a particle driven by ultrasonic
    vibrations. We design an experimental system consisting of an electromechanical
    vibration scheme to drive the particle’s vibrations and an imaging scheme to track
    its trajectories. We study the trajectories to determine how the particle’s dynamics
    evolve under the driven conditions, considering out of equilibrium systems in
    the context of equilibrium statistical mechanics. Using a Langevin framework and
    the Boltzmann factor, we characterize the particle’s dynamics as complex; the
    particle motion\r\nis not purely diffusive. We extract physical parameters like
    spring constant, effective temperature, damping coefficient and resonance frequency.\r\n\r\nIn
    the second project, we explore and develop techniques in the design and microfabrication
    of particles across scales. Microfabrication involves building structures at the
    micron or submicron scale. These designed miniaturized patterns, objects, or devices
    are useful in biophysics, pharmacology, medical biology, and nanotechnology. We
    specifically apply two-photon polymerization, a form of 3D nano printing. We print
    millimetric particles, characterizing different designs to evaluate and showcase
    the resolution, aspect ratio integrity and print quality of the printing process.
    We also design and fabricate a microsensor to deflect under applicable force of
    order 0.1 pN. We present fundamental concepts needed to design the microsensor,
    showcasing 3D printing at considerably smaller scales down to the µm or below."
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
acknowledgement: "I would like to acknowledge Scott Waitukaitis and Jérémie Palacci,
  for their supervision, and their extensive support of my learning. \r\n\r\nFor the
  beautiful characterization images used in this work, I would like to thank Dr. Daniel
  Grober, Samuel Hajek and Felix Pertl.\r\n\r\nThe Palacci group, particularly Malina
  Strugaru and Dan Grober, for their continuous guidance in decoding and following
  my streams of thought.\r\n\r\nTo the Waitukaitis group, for helping me find my footing
  in science, and making me feel at\r\nhome.\r\n\r\nTo the Nanofabrication Facility
  (NFF) at ISTA, for training me in significant aspects of my research. The MIBA Facility,
  and particularly Todor Asenov for consistently picking up the phone for my machining
  and designing needs.\r\n\r\nTo my friends, Mariana, Lenka, Aaron, Rebecca, Eavan
  who provided an ear, wine, and a lot more when I needed to vent, talk through my
  crises as well as experiment. For the walks, for the coffees, for reading through
  my work and providing edits, for dinners to take me out of blocks and binds and
  for cheering me on when it felt insurmountable. \r\n\r\nFinally, I am grateful to
  Griff and Fletcher, whose music helped me through several blocks, especially with
  my writing.\r\n\r\nMy science would not have been possible without the guidance,
  support and contributions of\r\nall these people, and more."
alternative_title:
- ISTA Master's Thesis
article_processing_charge: No
author:
- first_name: Cecelia N
  full_name: Mweka, Cecelia N
  id: 2a69ab4b-896a-11ed-bdf8-cb8641cf2b21
  last_name: Mweka
citation:
  ama: Mweka CN. Non equilibrium dynamics of driven individual particles and 3D printing
    across scales. 2024. doi:<a href="https://doi.org/10.15479/at:ista:18588">10.15479/at:ista:18588</a>
  apa: Mweka, C. N. (2024). <i>Non equilibrium dynamics of driven individual particles
    and 3D printing across scales</i>. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/at:ista:18588">https://doi.org/10.15479/at:ista:18588</a>
  chicago: Mweka, Cecelia N. “Non Equilibrium Dynamics of Driven Individual Particles
    and 3D Printing across Scales.” Institute of Science and Technology Austria, 2024.
    <a href="https://doi.org/10.15479/at:ista:18588">https://doi.org/10.15479/at:ista:18588</a>.
  ieee: C. N. Mweka, “Non equilibrium dynamics of driven individual particles and
    3D printing across scales,” Institute of Science and Technology Austria, 2024.
  ista: Mweka CN. 2024. Non equilibrium dynamics of driven individual particles and
    3D printing across scales. Institute of Science and Technology Austria.
  mla: Mweka, Cecelia N. <i>Non Equilibrium Dynamics of Driven Individual Particles
    and 3D Printing across Scales</i>. Institute of Science and Technology Austria,
    2024, doi:<a href="https://doi.org/10.15479/at:ista:18588">10.15479/at:ista:18588</a>.
  short: C.N. Mweka, Non Equilibrium Dynamics of Driven Individual Particles and 3D
    Printing across Scales, Institute of Science and Technology Austria, 2024.
corr_author: '1'
date_created: 2024-11-27T09:12:02Z
date_published: 2024-11-29T00:00:00Z
date_updated: 2026-04-07T12:42:13Z
day: '29'
ddc:
- '530'
degree_awarded: MS
department:
- _id: GradSch
doi: 10.15479/at:ista:18588
file:
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  date_created: 2024-11-28T12:50:32Z
  date_updated: 2024-11-28T12:50:32Z
  file_id: '18597'
  file_name: Cecelia Mweka Master Thesis.pdf
  file_size: 3836671
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  creator: cmweka
  date_created: 2024-11-28T12:51:43Z
  date_updated: 2024-12-13T11:30:53Z
  file_id: '18598'
  file_name: Cecelia Mweka Master Thesis.docx
  file_size: 7068210
  relation: source_file
file_date_updated: 2024-12-13T11:30:53Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: '61'
publication_identifier:
  issn:
  - 2791-4585
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
title: Non equilibrium dynamics of driven individual particles and 3D printing across
  scales
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18596'
abstract:
- lang: eng
  text: Hormone perception and signaling pathways have a fundamental regulatory function
    in the physiological processes of plants. Cytokinins, a class of plant hormones,
    regulate cell division and meristem maintenance. The cytokinin signaling pathway
    is well established in the model plant Arabidopsis thaliana. Several negative
    feedback mechanisms, tightly controlling cytokinin signaling output, have been
    described previously. In this study, we identified a new feedback mechanism executed
    through alternative splicing of the cytokinin receptor AHK4/CRE1. A novel splicing
    variant named CRE1int7 results from seventh intron retention, introducing a premature
    termination codon in the transcript. We showed that CRE1int7 is translated in
    planta into a truncated receptor lacking the C-terminal receiver domain essential
    for signal transduction. CRE1int7 can bind cytokinin but cannot activate the downstream
    cascade. We present a novel negative feedback mechanism of the cytokinin signaling
    pathway, facilitated by a decoy receptor that can inactivate canonical cytokinin
    receptors via dimerization and compete with them for ligand binding. Ensuring
    proper plant growth and development requires precise control of the cytokinin
    signaling pathway at several levels. CRE1int7 represents a so-far unknown mechanism
    for fine-tuning the cytokinin signaling pathway in Arabidopsis.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: We dedicate this paper to the deceased Petr Galuszka for his inspiration
  and support of our project. We thank Prof. Peter Hedden for constructive criticism
  of the manuscript and English editing. No conflict of interest is declared.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Michaela
  full_name: Králová, Michaela
  last_name: Králová
- first_name: Ivona
  full_name: Kubalová, Ivona
  last_name: Kubalová
- first_name: Jakub
  full_name: Hajný, Jakub
  last_name: Hajný
- first_name: Karolina
  full_name: Kubiasova, Karolina
  id: 946011F4-3E71-11EA-860B-C7A73DDC885E
  last_name: Kubiasova
  orcid: 0000-0001-5630-9419
- first_name: Karolína
  full_name: Vagaská, Karolína
  last_name: Vagaská
- first_name: Zengxiang
  full_name: Ge, Zengxiang
  id: f43371a3-09ff-11eb-8013-bd0c6a2f6de8
  last_name: Ge
  orcid: 0000-0001-9381-3577
- first_name: Michelle C
  full_name: Gallei, Michelle C
  id: 35A03822-F248-11E8-B48F-1D18A9856A87
  last_name: Gallei
  orcid: 0000-0003-1286-7368
- first_name: Hana
  full_name: Semerádová, Hana
  id: 42FE702E-F248-11E8-B48F-1D18A9856A87
  last_name: Semerádová
- first_name: Anna
  full_name: Kuchařová, Anna
  last_name: Kuchařová
- first_name: Martin
  full_name: Hönig, Martin
  last_name: Hönig
- first_name: Aline
  full_name: Monzer, Aline
  id: 2DB5D88C-D7B3-11E9-B8FD-7907E6697425
  last_name: Monzer
- first_name: Martin
  full_name: Kovačik, Martin
  last_name: Kovačik
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Yoshihisa
  full_name: Ikeda, Yoshihisa
  last_name: Ikeda
- first_name: David
  full_name: Zalabák, David
  last_name: Zalabák
citation:
  ama: Králová M, Kubalová I, Hajný J, et al. A decoy receptor derived from alternative
    splicing fine-tunes cytokinin signaling in Arabidopsis. <i>Molecular Plant</i>.
    2024;17(12):1850-1865. doi:<a href="https://doi.org/10.1016/j.molp.2024.11.001">10.1016/j.molp.2024.11.001</a>
  apa: Králová, M., Kubalová, I., Hajný, J., Kubiasova, K., Vagaská, K., Ge, Z., …
    Zalabák, D. (2024). A decoy receptor derived from alternative splicing fine-tunes
    cytokinin signaling in Arabidopsis. <i>Molecular Plant</i>. Elsevier. <a href="https://doi.org/10.1016/j.molp.2024.11.001">https://doi.org/10.1016/j.molp.2024.11.001</a>
  chicago: Králová, Michaela, Ivona Kubalová, Jakub Hajný, Karolina Kubiasova, Karolína
    Vagaská, Zengxiang Ge, Michelle C Gallei, et al. “A Decoy Receptor Derived from
    Alternative Splicing Fine-Tunes Cytokinin Signaling in Arabidopsis.” <i>Molecular
    Plant</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.molp.2024.11.001">https://doi.org/10.1016/j.molp.2024.11.001</a>.
  ieee: M. Králová <i>et al.</i>, “A decoy receptor derived from alternative splicing
    fine-tunes cytokinin signaling in Arabidopsis,” <i>Molecular Plant</i>, vol. 17,
    no. 12. Elsevier, pp. 1850–1865, 2024.
  ista: Králová M, Kubalová I, Hajný J, Kubiasova K, Vagaská K, Ge Z, Gallei MC, Semerádová
    H, Kuchařová A, Hönig M, Monzer A, Kovačik M, Friml J, Novák O, Benková E, Ikeda
    Y, Zalabák D. 2024. A decoy receptor derived from alternative splicing fine-tunes
    cytokinin signaling in Arabidopsis. Molecular Plant. 17(12), 1850–1865.
  mla: Králová, Michaela, et al. “A Decoy Receptor Derived from Alternative Splicing
    Fine-Tunes Cytokinin Signaling in Arabidopsis.” <i>Molecular Plant</i>, vol. 17,
    no. 12, Elsevier, 2024, pp. 1850–65, doi:<a href="https://doi.org/10.1016/j.molp.2024.11.001">10.1016/j.molp.2024.11.001</a>.
  short: M. Králová, I. Kubalová, J. Hajný, K. Kubiasova, K. Vagaská, Z. Ge, M.C.
    Gallei, H. Semerádová, A. Kuchařová, M. Hönig, A. Monzer, M. Kovačik, J. Friml,
    O. Novák, E. Benková, Y. Ikeda, D. Zalabák, Molecular Plant 17 (2024) 1850–1865.
date_created: 2024-11-28T11:13:35Z
date_published: 2024-12-02T00:00:00Z
date_updated: 2025-09-08T14:46:45Z
day: '02'
ddc:
- '580'
department:
- _id: JiFr
- _id: EvBe
doi: 10.1016/j.molp.2024.11.001
external_id:
  isi:
  - '001373778300001'
  pmid:
  - '39501563'
file:
- access_level: open_access
  checksum: a11feea4b1677df76b632eca04bfc1dd
  content_type: application/pdf
  creator: dernst
  date_created: 2024-12-03T11:08:09Z
  date_updated: 2024-12-03T11:08:09Z
  file_id: '18612'
  file_name: 2024_MolecularPlant_Kralova.pdf
  file_size: 3308945
  relation: main_file
  success: 1
file_date_updated: 2024-12-03T11:08:09Z
has_accepted_license: '1'
intvolume: '        17'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1850-1865
pmid: 1
publication: Molecular Plant
publication_identifier:
  issn:
  - 1674-2052
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling
  in Arabidopsis
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2024'
...
---
OA_type: closed access
_id: '18599'
abstract:
- lang: eng
  text: "Hypernode logic can reason about the prefix relation on stutter-reduced finite
    traces through the stutter-reduced prefix predicate. We increase the expressiveness
    of hypernode logic in two ways. First, we split the stutter-reduced prefix predicate
    into an explicit stutter-reduction operator and the classical prefix predicate
    on words. This change gives hypernode logic the ability to combine synchronous
    and asynchronous reasoning by explicitly stating which parts of traces can stutter.
    Second, we allow the use of regular expressions in formulas to reason about the
    structure of traces. This change enables hypernode logic to describe a mixture
    of trace properties and hyperproperties.\r\n\r\nWe show how to translate extended
    hypernode logic formulas into multi-track automata, which are automata that read
    multiple input words. Then we describe a fully online monitoring algorithm for
    monitoring k-safety hyperproperties specified in the logic. We have implemented
    the monitoring algorithm, and evaluated it on monitoring synchronous and asynchronous
    versions of observational determinism, and on checking the privacy preservation
    by compiler optimizations."
acknowledgement: This work was supported in part by the ERC-2020-AdG 101020093, and
  by the Austrian Science Fund (FWF) SFB project SpyCoDe F8502.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Ana
  full_name: Oliveira da Costa, Ana
  id: f347ec37-6676-11ee-b395-a888cb7b4fb4
  last_name: Oliveira da Costa
  orcid: 0000-0002-8741-5799
citation:
  ama: 'Chalupa M, Henzinger TA, Oliveira da Costa A. Monitoring extended hypernode
    logic. In: <i>Integrated Formal Methods</i>. Vol 15234. Springer Nature; 2024:151-171.
    doi:<a href="https://doi.org/10.1007/978-3-031-76554-4_9">10.1007/978-3-031-76554-4_9</a>'
  apa: Chalupa, M., Henzinger, T. A., &#38; Oliveira da Costa, A. (2024). Monitoring
    extended hypernode logic. In <i>Integrated Formal Methods</i> (Vol. 15234, pp.
    151–171). Springer Nature. <a href="https://doi.org/10.1007/978-3-031-76554-4_9">https://doi.org/10.1007/978-3-031-76554-4_9</a>
  chicago: Chalupa, Marek, Thomas A Henzinger, and Ana Oliveira da Costa. “Monitoring
    Extended Hypernode Logic.” In <i>Integrated Formal Methods</i>, 15234:151–71.
    Springer Nature, 2024. <a href="https://doi.org/10.1007/978-3-031-76554-4_9">https://doi.org/10.1007/978-3-031-76554-4_9</a>.
  ieee: M. Chalupa, T. A. Henzinger, and A. Oliveira da Costa, “Monitoring extended
    hypernode logic,” in <i>Integrated Formal Methods</i>, 2024, vol. 15234, pp. 151–171.
  ista: Chalupa M, Henzinger TA, Oliveira da Costa A. 2024. Monitoring extended hypernode
    logic. Integrated Formal Methods. , LNCS, vol. 15234, 151–171.
  mla: Chalupa, Marek, et al. “Monitoring Extended Hypernode Logic.” <i>Integrated
    Formal Methods</i>, vol. 15234, Springer Nature, 2024, pp. 151–71, doi:<a href="https://doi.org/10.1007/978-3-031-76554-4_9">10.1007/978-3-031-76554-4_9</a>.
  short: M. Chalupa, T.A. Henzinger, A. Oliveira da Costa, in:, Integrated Formal
    Methods, Springer Nature, 2024, pp. 151–171.
corr_author: '1'
date_created: 2024-12-01T23:01:52Z
date_published: 2024-11-13T00:00:00Z
date_updated: 2025-09-08T14:47:22Z
day: '13'
department:
- _id: ToHe
doi: 10.1007/978-3-031-76554-4_9
ec_funded: 1
external_id:
  isi:
  - '001416640500009'
intvolume: '     15234'
isi: 1
language:
- iso: eng
month: '11'
oa_version: None
page: 151-171
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
  grant_number: F8502
  name: Interface Theory for Security and Privacy
publication: Integrated Formal Methods
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031765537'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Monitoring extended hypernode logic
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15234
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '18600'
abstract:
- lang: eng
  text: 'The analysis of formal models that include quantitative aspects such as timing
    or probabilistic choices is performed by quantitative verification tools. Broad
    and mature tool support is available for computing basic properties such as expected
    rewards on basic models such as Markov chains. Previous editions of QComp, the
    comparison of tools for the analysis of quantitative formal models, focused on
    this setting. Many application scenarios, however, require more advanced property
    types such as LTL and parameter synthesis queries as well as advanced models like
    stochastic games and partially observable MDPs. For these, tool support is in
    its infancy today. This paper presents the outcomes of QComp 2023: a survey of
    the state of the art in quantitative verification tool support for advanced property
    types and models. With tools ranging from first research prototypes to well-supported
    integrations into established toolsets, this report highlights today’s active
    areas and tomorrow’s challenges in tool-focused research for quantitative verification.'
acknowledgement: The authors are ordered alphabetically. This work was supported by
  DFG RTG 2236/2 (UnRAVeL) and DFG project TRR 248 (CPEC, ID 389792660), by the EU
  under MSCA grant agreements 101008233 (MISSION), 101034413 (IST-BRIDGE), and 101067199
  (ProSVED), by ERC Starting Grant 101077178 (DEUCE), ERC Consolidator Grant 864075
  (CAESAR), and ERC Advanced Grant 834115 (FUN2MODEL), by GAČR grant GA23-06963S (VESCAA),
  by National Science Foundation grant 1856733, by NextGenerationEU project D53D23008400006
  (SMARTITUDE), and by NWO VENI grant 639.021.754.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Roman
  full_name: Andriushchenko, Roman
  last_name: Andriushchenko
- first_name: Alexander
  full_name: Bork, Alexander
  last_name: Bork
- first_name: Carlos E.
  full_name: Budde, Carlos E.
  last_name: Budde
- first_name: Milan
  full_name: Češka, Milan
  last_name: Češka
- first_name: Kush
  full_name: Grover, Kush
  last_name: Grover
- first_name: Ernst Moritz
  full_name: Hahn, Ernst Moritz
  last_name: Hahn
- first_name: Arnd
  full_name: Hartmanns, Arnd
  last_name: Hartmanns
- first_name: Bryant
  full_name: Israelsen, Bryant
  last_name: Israelsen
- first_name: Nils
  full_name: Jansen, Nils
  last_name: Jansen
- first_name: Joshua
  full_name: Jeppson, Joshua
  last_name: Jeppson
- first_name: Sebastian
  full_name: Junges, Sebastian
  last_name: Junges
- first_name: Maximilian A.
  full_name: Köhl, Maximilian A.
  last_name: Köhl
- first_name: Bettina
  full_name: Könighofer, Bettina
  last_name: Könighofer
- first_name: Jan
  full_name: Kretinsky, Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
  orcid: 0000-0002-8122-2881
- first_name: Tobias
  full_name: Meggendorfer, Tobias
  id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
  last_name: Meggendorfer
  orcid: 0000-0002-1712-2165
- first_name: David
  full_name: Parker, David
  last_name: Parker
- first_name: Stefan
  full_name: Pranger, Stefan
  last_name: Pranger
- first_name: Tim
  full_name: Quatmann, Tim
  last_name: Quatmann
- first_name: Enno
  full_name: Ruijters, Enno
  last_name: Ruijters
- first_name: Landon
  full_name: Taylor, Landon
  last_name: Taylor
- first_name: Matthias
  full_name: Volk, Matthias
  last_name: Volk
- first_name: Maximilian
  full_name: Weininger, Maximilian
  id: 02ab0197-cc70-11ed-ab61-918e71f56881
  last_name: Weininger
- first_name: Zhen
  full_name: Zhang, Zhen
  last_name: Zhang
citation:
  ama: 'Andriushchenko R, Bork A, Budde CE, et al. Tools at the Frontiers of Quantitative
    Verification: QComp 2023 Competition Report. In: <i>TOOLympics Challenge 2023</i>.
    Vol 14550. Springer Nature; 2024:90-146. doi:<a href="https://doi.org/10.1007/978-3-031-67695-6_4">10.1007/978-3-031-67695-6_4</a>'
  apa: 'Andriushchenko, R., Bork, A., Budde, C. E., Češka, M., Grover, K., Hahn, E.
    M., … Zhang, Z. (2024). Tools at the Frontiers of Quantitative Verification: QComp
    2023 Competition Report. In <i>TOOLympics Challenge 2023</i> (Vol. 14550, pp.
    90–146). Springer Nature. <a href="https://doi.org/10.1007/978-3-031-67695-6_4">https://doi.org/10.1007/978-3-031-67695-6_4</a>'
  chicago: 'Andriushchenko, Roman, Alexander Bork, Carlos E. Budde, Milan Češka, Kush
    Grover, Ernst Moritz Hahn, Arnd Hartmanns, et al. “Tools at the Frontiers of Quantitative
    Verification: QComp 2023 Competition Report.” In <i>TOOLympics Challenge 2023</i>,
    14550:90–146. Springer Nature, 2024. <a href="https://doi.org/10.1007/978-3-031-67695-6_4">https://doi.org/10.1007/978-3-031-67695-6_4</a>.'
  ieee: 'R. Andriushchenko <i>et al.</i>, “Tools at the Frontiers of Quantitative
    Verification: QComp 2023 Competition Report,” in <i>TOOLympics Challenge 2023</i>,
    2024, vol. 14550, pp. 90–146.'
  ista: 'Andriushchenko R, Bork A, Budde CE, Češka M, Grover K, Hahn EM, Hartmanns
    A, Israelsen B, Jansen N, Jeppson J, Junges S, Köhl MA, Könighofer B, Kretinsky
    J, Meggendorfer T, Parker D, Pranger S, Quatmann T, Ruijters E, Taylor L, Volk
    M, Weininger M, Zhang Z. 2024. Tools at the Frontiers of Quantitative Verification:
    QComp 2023 Competition Report. TOOLympics Challenge 2023. , LNCS, vol. 14550,
    90–146.'
  mla: 'Andriushchenko, Roman, et al. “Tools at the Frontiers of Quantitative Verification:
    QComp 2023 Competition Report.” <i>TOOLympics Challenge 2023</i>, vol. 14550,
    Springer Nature, 2024, pp. 90–146, doi:<a href="https://doi.org/10.1007/978-3-031-67695-6_4">10.1007/978-3-031-67695-6_4</a>.'
  short: R. Andriushchenko, A. Bork, C.E. Budde, M. Češka, K. Grover, E.M. Hahn, A.
    Hartmanns, B. Israelsen, N. Jansen, J. Jeppson, S. Junges, M.A. Köhl, B. Könighofer,
    J. Kretinsky, T. Meggendorfer, D. Parker, S. Pranger, T. Quatmann, E. Ruijters,
    L. Taylor, M. Volk, M. Weininger, Z. Zhang, in:, TOOLympics Challenge 2023, Springer
    Nature, 2024, pp. 90–146.
date_created: 2024-12-01T23:01:53Z
date_published: 2024-11-01T00:00:00Z
date_updated: 2025-09-08T14:45:11Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-031-67695-6_4
external_id:
  arxiv:
  - '2405.13583'
  isi:
  - '001434957500004'
intvolume: '     14550'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2405.13583'
month: '11'
oa: 1
oa_version: Preprint
page: 90-146
publication: TOOLympics Challenge 2023
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031676949'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition
  Report'
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14550
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '18602'
abstract:
- lang: eng
  text: Semiconductor quantum dots (QDs) in planar germanium (Ge) heterostructures
    have emerged as front-runners for future hole-based quantum processors. Here,
    we present strong coupling between a hole charge qubit, defined in a double quantum
    dot (DQD) in planar Ge, and microwave photons in a high-impedance (Zr = 1.3 kΩ)
    resonator based on an array of superconducting quantum interference devices (SQUIDs).
    Our investigation reveals vacuum-Rabi splittings with coupling strengths up to
    g0/2π = 260 MHz, and a cooperativity of C ~ 100, dependent on DQD tuning. Furthermore,
    utilizing the frequency tunability of our resonator, we explore the quenched energy
    splitting associated with strong Coulomb correlation effects in Ge QDs. The observed
    enhanced coherence of the strongly correlated excited state signals the presence
    of distinct symmetries within related spin functions, serving as a precursor to
    the strong coupling between photons and spin-charge hybrid qubits in planar Ge.
    This work paves the way towards coherent quantum connections between remote hole
    qubits in planar Ge, required to scale up hole-based quantum processors.
acknowledgement: The authors thank Simone Frasca, Vincent Jouanny, Guillaume Beaulieu,
  Camille Roy, Dominic Dahinden, Davide Lombardo, Daniel Chrastina, and Siddhart Gautam
  for contributing to some cleanroom fabrication steps, the measurement setup, device
  simulations, data analysis, and for the useful discussions. P.S. acknowledges support
  from the Swiss National Science Foundation (SNSF) through the grants Ref. No. 200021
  200418 and Ref. No. 206021_205335, and from the Swiss State Secretariat for Education,
  Research and Innovation (SERI) under contract number 01042765 SEFRI MB22.00081.
  W.J. acknowledges support from the EPFL QSE Postdoctoral Fellowship Grant. S.B.,
  D.L., and P.S. acknowledge support from the NCCR Spin Qubit in Silicon (NCCR-SPIN)
  Grant No. 51NF40-180604. M.J., G.K., G.I., and S.C. acknowledge support from the
  Horizon Europe Project IGNITE ID 101070193. G.K. acknowledges support from the FWF
  via the P32235 and I05060 projects.
article_number: '10177'
article_processing_charge: Yes
article_type: original
author:
- first_name: Franco
  full_name: De Palma, Franco
  last_name: De Palma
- first_name: Fabian
  full_name: Oppliger, Fabian
  last_name: Oppliger
- first_name: Wonjin
  full_name: Jang, Wonjin
  last_name: Jang
- first_name: Stefano
  full_name: Bosco, Stefano
  last_name: Bosco
- first_name: Marian
  full_name: Janik, Marian
  id: 396A1950-F248-11E8-B48F-1D18A9856A87
  last_name: Janik
  orcid: 0009-0003-9037-8831
- first_name: Stefano
  full_name: Calcaterra, Stefano
  last_name: Calcaterra
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
- first_name: Giovanni
  full_name: Isella, Giovanni
  last_name: Isella
- first_name: Daniel
  full_name: Loss, Daniel
  last_name: Loss
- first_name: Pasquale
  full_name: Scarlino, Pasquale
  last_name: Scarlino
citation:
  ama: De Palma F, Oppliger F, Jang W, et al. Strong hole-photon coupling in planar
    Ge for probing charge degree and strongly correlated states. <i>Nature Communications</i>.
    2024;15. doi:<a href="https://doi.org/10.1038/s41467-024-54520-7">10.1038/s41467-024-54520-7</a>
  apa: De Palma, F., Oppliger, F., Jang, W., Bosco, S., Janik, M., Calcaterra, S.,
    … Scarlino, P. (2024). Strong hole-photon coupling in planar Ge for probing charge
    degree and strongly correlated states. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-024-54520-7">https://doi.org/10.1038/s41467-024-54520-7</a>
  chicago: De Palma, Franco, Fabian Oppliger, Wonjin Jang, Stefano Bosco, Marian Janik,
    Stefano Calcaterra, Georgios Katsaros, Giovanni Isella, Daniel Loss, and Pasquale
    Scarlino. “Strong Hole-Photon Coupling in Planar Ge for Probing Charge Degree
    and Strongly Correlated States.” <i>Nature Communications</i>. Springer Nature,
    2024. <a href="https://doi.org/10.1038/s41467-024-54520-7">https://doi.org/10.1038/s41467-024-54520-7</a>.
  ieee: F. De Palma <i>et al.</i>, “Strong hole-photon coupling in planar Ge for probing
    charge degree and strongly correlated states,” <i>Nature Communications</i>, vol.
    15. Springer Nature, 2024.
  ista: De Palma F, Oppliger F, Jang W, Bosco S, Janik M, Calcaterra S, Katsaros G,
    Isella G, Loss D, Scarlino P. 2024. Strong hole-photon coupling in planar Ge for
    probing charge degree and strongly correlated states. Nature Communications. 15,
    10177.
  mla: De Palma, Franco, et al. “Strong Hole-Photon Coupling in Planar Ge for Probing
    Charge Degree and Strongly Correlated States.” <i>Nature Communications</i>, vol.
    15, 10177, Springer Nature, 2024, doi:<a href="https://doi.org/10.1038/s41467-024-54520-7">10.1038/s41467-024-54520-7</a>.
  short: F. De Palma, F. Oppliger, W. Jang, S. Bosco, M. Janik, S. Calcaterra, G.
    Katsaros, G. Isella, D. Loss, P. Scarlino, Nature Communications 15 (2024).
date_created: 2024-12-01T23:01:53Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2025-09-08T14:46:06Z
day: '01'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1038/s41467-024-54520-7
external_id:
  isi:
  - '001362684200001'
  pmid:
  - '39580488'
file:
- access_level: open_access
  checksum: ef9f99a84089c388904cc8aa8d89c55a
  content_type: application/pdf
  creator: dernst
  date_created: 2024-12-03T11:00:15Z
  date_updated: 2024-12-03T11:00:15Z
  file_id: '18611'
  file_name: 2024_NatureComm_dePalma.pdf
  file_size: 5288092
  relation: main_file
  success: 1
file_date_updated: 2024-12-03T11:00:15Z
has_accepted_license: '1'
intvolume: '        15'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 237B3DA4-32DE-11EA-91FC-C7463DDC885E
  call_identifier: FWF
  grant_number: P32235
  name: Towards scalable hut wire quantum devices
- _id: c0977eea-5a5b-11eb-8a69-a862db0cf4d1
  grant_number: I05060
  name: High impedance circuit quantum electrodynamics with hole spins
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Strong hole-photon coupling in planar Ge for probing charge degree and strongly
  correlated states
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15
year: '2024'
...
---
APC_amount: 6248,82 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '18603'
abstract:
- lang: eng
  text: It is widely believed that information storage in neuronal circuits involves
    nanoscopic structural changes at synapses, resulting in the formation of synaptic
    engrams. However, direct evidence for this hypothesis is lacking. To test this
    conjecture, we combined chemical potentiation, functional analysis by paired pre-postsynaptic
    recordings, and structural analysis by electron microscopy (EM) and freeze-fracture
    replica labeling (FRL) at the rodent hippocampal mossy fiber synapse, a key synapse
    in the trisynaptic circuit of the hippocampus. Biophysical analysis of synaptic
    transmission revealed that forskolin-induced chemical potentiation increased the
    readily releasable vesicle pool size and vesicular release probability by 146%
    and 49%, respectively. Structural analysis of mossy fiber synapses by EM and FRL
    demonstrated an increase in the number of vesicles close to the plasma membrane
    and the number of clusters of the priming protein Munc13-1, indicating an increase
    in the number of both docked and primed vesicles. Furthermore, FRL analysis revealed
    a significant reduction of the distance between Munc13-1 and CaV2.1 Ca2+ channels,
    suggesting reconfiguration of the channel-vesicle coupling nanotopography. Our
    results indicate that presynaptic plasticity is associated with structural reorganization
    of active zones. We propose that changes in potential nanoscopic organization
    at synaptic vesicle release sites may be correlates of learning and memory at
    a plastic central synapse.
acknowledged_ssus:
- _id: EM-Fac
- _id: PreCl
acknowledgement: "We thank Carolina Borges-Merjane, Jing-Jing Chen, Katharina Lichter,
  and Samuel Young for critically reading the manuscript; the Electron Microscopy
  Facility of ISTA, in particular Vanessa Zheden, for extensive support, advice, and
  experimental assistance; the Preclinical Facility of ISTA, in particular Victoria
  Wimmer and Michael Schunn, for experimental assistance; Florian Marr and Christina
  Altmutter for technical support; Alois Schlögl for help with analysis; and Eleftheria
  Kralli-Beller for manuscript editing. We also thank Cordelia Imig for providing
  Munc13-1cKO-Munc13-2/3(−/−) mutant mice. Part of the work has been published in
  O.K.’s thesis in partial fulfillment of the requirements for the degree of Doctor
  of Philosophy.\r\nThis project received funding from the European Research Council
  and European Union’s Horizon 2020 research and innovation programme (ERC 692692
  to P.J.; https://cordis.europa.eu/project/id/692692/de) and from the Fond zur Förderung
  der Wissenschaftlichen Forschung (Z312-B27 Wittgenstein award to P.J., https://www.fwf.ac.at/en/funding/portfolio/projects/fwf-wittgenstein-award;
  W1205-B09 and P36232-B to P.J., https://www.fwf.ac.at/en/funding; I6166-B to R.S.;
  https://www.fwf.ac.at/en/funding). The funders had no role in study design, data
  collection and analysis, decision to publish, or preparation of the manuscript."
article_number: e3002879
article_processing_charge: Yes
article_type: original
author:
- first_name: Olena
  full_name: Kim, Olena
  id: 3F8ABDDA-F248-11E8-B48F-1D18A9856A87
  last_name: Kim
  orcid: 0000-0003-2344-1039
- first_name: Yuji
  full_name: Okamoto, Yuji
  id: 3337E116-F248-11E8-B48F-1D18A9856A87
  last_name: Okamoto
  orcid: 0000-0003-0408-6094
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Nils
  full_name: Brose, Nils
  last_name: Brose
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Kim O, Okamoto Y, Kaufmann W, Brose N, Shigemoto R, Jonas PM. Presynaptic cAMP-PKA-mediated
    potentiation induces reconfiguration of synaptic vesicle pools and channel-vesicle
    coupling at hippocampal mossy fiber boutons. <i>PLoS Biology</i>. 2024;22(11).
    doi:<a href="https://doi.org/10.1371/journal.pbio.3002879">10.1371/journal.pbio.3002879</a>
  apa: Kim, O., Okamoto, Y., Kaufmann, W., Brose, N., Shigemoto, R., &#38; Jonas,
    P. M. (2024). Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration
    of synaptic vesicle pools and channel-vesicle coupling at hippocampal mossy fiber
    boutons. <i>PLoS Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.3002879">https://doi.org/10.1371/journal.pbio.3002879</a>
  chicago: Kim, Olena, Yuji Okamoto, Walter Kaufmann, Nils Brose, Ryuichi Shigemoto,
    and Peter M Jonas. “Presynaptic CAMP-PKA-Mediated Potentiation Induces Reconfiguration
    of Synaptic Vesicle Pools and Channel-Vesicle Coupling at Hippocampal Mossy Fiber
    Boutons.” <i>PLoS Biology</i>. Public Library of Science, 2024. <a href="https://doi.org/10.1371/journal.pbio.3002879">https://doi.org/10.1371/journal.pbio.3002879</a>.
  ieee: O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, and P. M. Jonas,
    “Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic
    vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons,”
    <i>PLoS Biology</i>, vol. 22, no. 11. Public Library of Science, 2024.
  ista: Kim O, Okamoto Y, Kaufmann W, Brose N, Shigemoto R, Jonas PM. 2024. Presynaptic
    cAMP-PKA-mediated potentiation induces reconfiguration of synaptic vesicle pools
    and channel-vesicle coupling at hippocampal mossy fiber boutons. PLoS Biology.
    22(11), e3002879.
  mla: Kim, Olena, et al. “Presynaptic CAMP-PKA-Mediated Potentiation Induces Reconfiguration
    of Synaptic Vesicle Pools and Channel-Vesicle Coupling at Hippocampal Mossy Fiber
    Boutons.” <i>PLoS Biology</i>, vol. 22, no. 11, e3002879, Public Library of Science,
    2024, doi:<a href="https://doi.org/10.1371/journal.pbio.3002879">10.1371/journal.pbio.3002879</a>.
  short: O. Kim, Y. Okamoto, W. Kaufmann, N. Brose, R. Shigemoto, P.M. Jonas, PLoS
    Biology 22 (2024).
corr_author: '1'
date_created: 2024-12-01T23:01:54Z
date_published: 2024-11-18T00:00:00Z
date_updated: 2026-04-16T12:20:34Z
day: '18'
ddc:
- '570'
department:
- _id: PeJo
- _id: EM-Fac
- _id: RySh
doi: 10.1371/journal.pbio.3002879
ec_funded: 1
external_id:
  isi:
  - '001358568700003'
  pmid:
  - '39556620'
file:
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  checksum: 7de2dcb50deb65dde05c80082bb85a82
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  creator: dernst
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  file_id: '18608'
  file_name: 2024_PloSBio_Kim.pdf
  file_size: 3057631
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  success: 1
file_date_updated: 2024-12-03T08:56:53Z
has_accepted_license: '1'
intvolume: '        22'
isi: 1
issue: '11'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
project:
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  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glutamatergic synapse
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: Synaptic communication in neuronal microcircuits
- _id: bd88be38-d553-11ed-ba76-81d5a70a6ef5
  grant_number: P36232
  name: Mechanisms of GABA release in hippocampal circuits
- _id: b1b85715-d554-11ed-a5ad-84a07fc9f18e
  grant_number: I06166
  name: Structural & functional basis of presynaptic plasticity
- _id: 25C3DBB6-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W01205
  name: Zellkommunikation in Gesundheit und Krankheit
- _id: 3AC91DDA-15DF-11EA-824D-93A3E7B544D1
  call_identifier: FWF
  name: FWF Open Access Fund
publication: PLoS Biology
publication_identifier:
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  issn:
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publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
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scopus_import: '1'
status: public
title: Presynaptic cAMP-PKA-mediated potentiation induces reconfiguration of synaptic
  vesicle pools and channel-vesicle coupling at hippocampal mossy fiber boutons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 22
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '18604'
abstract:
- lang: eng
  text: 'A face in a curve arrangement is called popular if it is bounded by the same
    curve multiple times. Motivated by the automatic generation of curved nonogram
    puzzles, we investigate possibilities to eliminate the popular faces in an arrangement
    by inserting a single additional curve. This turns out to be NP-hard; however,
    it becomes tractable when the number of popular faces is small: We present a randomized
    FPT-time algorithm where the parameter is the number of popular faces.'
acknowledgement: "This work was initiated at the 16th European Research Week on Geometric
  Graphs in Strobl in 2019. A.W. has been supported by the Austrian Science Fund (FWF):
  W1230. S.T. has been funded by the Vienna Science and Technology Fund (WWTF) [10.47379/ICT19035]
  and by the NWO Gravitation project NETWORKS under grant no. 024.002.003. Part of
  the work was done while A.W. was emplyed at Graz University of Technology. Preliminary
  versions of this work have been presented at the 38th European Workshop on Computational
  Geometry (EuroCG\r\n2022) in Perugia [10] and at the 31st International Symposium
  on Graph Drawing and Network Visualization (GD 2023) in Isola delle Femmine [11]."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Phoebe
  full_name: De Nooijer, Phoebe
  last_name: De Nooijer
- first_name: Soeren
  full_name: Terziadis, Soeren
  last_name: Terziadis
- first_name: Alexandra
  full_name: Weinberger, Alexandra
  last_name: Weinberger
- first_name: Zuzana
  full_name: Masárová, Zuzana
  id: 45CFE238-F248-11E8-B48F-1D18A9856A87
  last_name: Masárová
  orcid: 0000-0002-6660-1322
- first_name: Tamara
  full_name: Mchedlidze, Tamara
  last_name: Mchedlidze
- first_name: Maarten
  full_name: Löffler, Maarten
  last_name: Löffler
- first_name: Günter
  full_name: Rote, Günter
  last_name: Rote
citation:
  ama: De Nooijer P, Terziadis S, Weinberger A, et al. Removing popular faces in curve
    arrangements. <i>Journal of Graph Algorithms and Applications</i>. 2024;28(2):47-82.
    doi:<a href="https://doi.org/10.7155/jgaa.v28i2.2988">10.7155/jgaa.v28i2.2988</a>
  apa: De Nooijer, P., Terziadis, S., Weinberger, A., Masárová, Z., Mchedlidze, T.,
    Löffler, M., &#38; Rote, G. (2024). Removing popular faces in curve arrangements.
    <i>Journal of Graph Algorithms and Applications</i>. Brown University. <a href="https://doi.org/10.7155/jgaa.v28i2.2988">https://doi.org/10.7155/jgaa.v28i2.2988</a>
  chicago: De Nooijer, Phoebe, Soeren Terziadis, Alexandra Weinberger, Zuzana Masárová,
    Tamara Mchedlidze, Maarten Löffler, and Günter Rote. “Removing Popular Faces in
    Curve Arrangements.” <i>Journal of Graph Algorithms and Applications</i>. Brown
    University, 2024. <a href="https://doi.org/10.7155/jgaa.v28i2.2988">https://doi.org/10.7155/jgaa.v28i2.2988</a>.
  ieee: P. De Nooijer <i>et al.</i>, “Removing popular faces in curve arrangements,”
    <i>Journal of Graph Algorithms and Applications</i>, vol. 28, no. 2. Brown University,
    pp. 47–82, 2024.
  ista: De Nooijer P, Terziadis S, Weinberger A, Masárová Z, Mchedlidze T, Löffler
    M, Rote G. 2024. Removing popular faces in curve arrangements. Journal of Graph
    Algorithms and Applications. 28(2), 47–82.
  mla: De Nooijer, Phoebe, et al. “Removing Popular Faces in Curve Arrangements.”
    <i>Journal of Graph Algorithms and Applications</i>, vol. 28, no. 2, Brown University,
    2024, pp. 47–82, doi:<a href="https://doi.org/10.7155/jgaa.v28i2.2988">10.7155/jgaa.v28i2.2988</a>.
  short: P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M.
    Löffler, G. Rote, Journal of Graph Algorithms and Applications 28 (2024) 47–82.
corr_author: '1'
date_created: 2024-12-01T23:01:54Z
date_published: 2024-11-03T00:00:00Z
date_updated: 2024-12-03T09:49:18Z
day: '03'
ddc:
- '510'
department:
- _id: UlWa
- _id: HeEd
doi: 10.7155/jgaa.v28i2.2988
external_id:
  arxiv:
  - '2202.12175'
file:
- access_level: open_access
  checksum: be611da6f9d790dc980d6fb7283fe889
  content_type: application/pdf
  creator: dernst
  date_created: 2024-12-03T09:45:00Z
  date_updated: 2024-12-03T09:45:00Z
  file_id: '18609'
  file_name: 2024_JourGraphAlgorithms_deNooijer.pdf
  file_size: 1582493
  relation: main_file
  success: 1
file_date_updated: 2024-12-03T09:45:00Z
has_accepted_license: '1'
intvolume: '        28'
issue: '2'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 47-82
publication: Journal of Graph Algorithms and Applications
publication_identifier:
  issn:
  - 1526-1719
publication_status: published
publisher: Brown University
quality_controlled: '1'
scopus_import: '1'
status: public
title: Removing popular faces in curve arrangements
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2024'
...
---
OA_type: closed access
_id: '18616'
abstract:
- lang: eng
  text: By patterning an ultrathin layered structure with tiny wells, physicists have
    created and imaged peculiar states known as quantum scars — revealing behaviour
    that could be used to boost the performance of electronic devices.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Dmitry
  full_name: Abanin, Dmitry
  last_name: Abanin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Abanin D, Serbyn M. Quantum scars make their mark in graphene. <i>Nature</i>.
    2024;635(8040):825-826. doi:<a href="https://doi.org/10.1038/d41586-024-03649-y">10.1038/d41586-024-03649-y</a>
  apa: Abanin, D., &#38; Serbyn, M. (2024). Quantum scars make their mark in graphene.
    <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/d41586-024-03649-y">https://doi.org/10.1038/d41586-024-03649-y</a>
  chicago: Abanin, Dmitry, and Maksym Serbyn. “Quantum Scars Make Their Mark in Graphene.”
    <i>Nature</i>. Springer Nature, 2024. <a href="https://doi.org/10.1038/d41586-024-03649-y">https://doi.org/10.1038/d41586-024-03649-y</a>.
  ieee: D. Abanin and M. Serbyn, “Quantum scars make their mark in graphene,” <i>Nature</i>,
    vol. 635, no. 8040. Springer Nature, pp. 825–826, 2024.
  ista: Abanin D, Serbyn M. 2024. Quantum scars make their mark in graphene. Nature.
    635(8040), 825–826.
  mla: Abanin, Dmitry, and Maksym Serbyn. “Quantum Scars Make Their Mark in Graphene.”
    <i>Nature</i>, vol. 635, no. 8040, Springer Nature, 2024, pp. 825–26, doi:<a href="https://doi.org/10.1038/d41586-024-03649-y">10.1038/d41586-024-03649-y</a>.
  short: D. Abanin, M. Serbyn, Nature 635 (2024) 825–826.
date_created: 2024-12-03T18:08:16Z
date_published: 2024-11-27T00:00:00Z
date_updated: 2025-09-08T14:57:35Z
day: '27'
department:
- _id: MaSe
doi: 10.1038/d41586-024-03649-y
external_id:
  isi:
  - '001367935000029'
  pmid:
  - '39604614'
intvolume: '       635'
isi: 1
issue: '8040'
language:
- iso: eng
month: '11'
oa_version: None
page: 825-826
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum scars make their mark in graphene
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 635
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18617'
abstract:
- lang: eng
  text: "Any complex-valued polynomial on (Rn)k decomposes into an algebraic combination
    of O(n)-invariant polynomials and harmonic polynomials. This decomposition, separation
    of variables, is granted to be unique if n≥2k−1. We prove that the condition n≥2k−1
    is not only sufficient, but also necessary for uniqueness of the separation. Moreover,
    we describe the structure of non-uniqueness of the separation in the boundary
    cases when n=2k−2 and n=2k−3.\r\nFormally, we study the kernel of a multiplication
    map ϕ carrying out separation of variables. We devise a general algorithmic procedure
    for describing Ker ϕ in the restricted non-stable range k≤n<2k−1. In the full
    non-stable range n<2k−1, we give formulas for highest weights of generators of
    the kernel as well as formulas for its Hilbert series. Using the developed methods,
    we obtain a list of highest weight vectors generating Ker ϕ."
acknowledgement: The author is sincerely grateful for guidance, advice and valuable
  feedback from Roman Lávička.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Daniel
  full_name: Beďatš, Daniel
  id: 78ea3cc9-31e7-11ee-aa02-a6169bbfe1f1
  last_name: Beďatš
  orcid: 0009-0004-1828-0044
citation:
  ama: Beďatš D. Separation of variables for scalar-valued polynomials in the non-stable
    range. <i>Journal of Algebra</i>. 2024;651:281-304. doi:<a href="https://doi.org/10.1016/j.jalgebra.2024.04.013">10.1016/j.jalgebra.2024.04.013</a>
  apa: Beďatš, D. (2024). Separation of variables for scalar-valued polynomials in
    the non-stable range. <i>Journal of Algebra</i>. Elsevier. <a href="https://doi.org/10.1016/j.jalgebra.2024.04.013">https://doi.org/10.1016/j.jalgebra.2024.04.013</a>
  chicago: Beďatš, Daniel. “Separation of Variables for Scalar-Valued Polynomials
    in the Non-Stable Range.” <i>Journal of Algebra</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.jalgebra.2024.04.013">https://doi.org/10.1016/j.jalgebra.2024.04.013</a>.
  ieee: D. Beďatš, “Separation of variables for scalar-valued polynomials in the non-stable
    range,” <i>Journal of Algebra</i>, vol. 651. Elsevier, pp. 281–304, 2024.
  ista: Beďatš D. 2024. Separation of variables for scalar-valued polynomials in the
    non-stable range. Journal of Algebra. 651, 281–304.
  mla: Beďatš, Daniel. “Separation of Variables for Scalar-Valued Polynomials in the
    Non-Stable Range.” <i>Journal of Algebra</i>, vol. 651, Elsevier, 2024, pp. 281–304,
    doi:<a href="https://doi.org/10.1016/j.jalgebra.2024.04.013">10.1016/j.jalgebra.2024.04.013</a>.
  short: D. Beďatš, Journal of Algebra 651 (2024) 281–304.
corr_author: '1'
date_created: 2024-12-04T07:58:45Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2025-09-08T14:57:00Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1016/j.jalgebra.2024.04.013
external_id:
  arxiv:
  - '2309.11154'
  isi:
  - '001232775600001'
file:
- access_level: open_access
  checksum: 7b01c89128ba16d5334dfab389a03878
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  creator: dernst
  date_created: 2024-12-09T13:56:26Z
  date_updated: 2024-12-09T13:56:26Z
  file_id: '18638'
  file_name: 2024_JourAlgebra_Bedats.pdf
  file_size: 486969
  relation: main_file
  success: 1
file_date_updated: 2024-12-09T13:56:26Z
has_accepted_license: '1'
intvolume: '       651'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 281-304
publication: Journal of Algebra
publication_identifier:
  issn:
  - 0021-8693
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Separation of variables for scalar-valued polynomials in the non-stable range
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 651
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '18627'
abstract:
- lang: eng
  text: In contrast with extended Bloch waves, a single particle can become spatially
    localized due to the so-called skin effect originating from non-Hermitian pumping.
    Here we show that in kinetically constrained many-body systems, the skin effect
    can instead manifest as dynamical amplification within the Fock space, beyond
    the intuitively expected and previously studied particle localization and clustering.
    We exemplify this non-Hermitian Fock skin effect in an asymmetric version of the
    PXP model and show that it gives rise to ergodicity-breaking eigenstates—the non-Hermitian
    analogs of quantum many-body scars. A distinguishing feature of these non-Hermitian
    scars is their enhanced robustness against external disorders. We propose an experimental
    realization of the non-Hermitian scar enhancement in a tilted Bose-Hubbard optical
    lattice with laser-induced loss. Additionally, we implement digital simulations
    of such scar enhancement on the IBM quantum processor. Our results show that the
    Fock skin effect provides a powerful tool for creating robust nonergodic states
    in generic open quantum systems.
acknowledgement: F. Q. and C. H. L. acknowledge support from the QEP2.0 Grant from
  the Singapore National Research Foundation (Grant No. NRF2021-QEP2-02-P09) and the
  Singapore MOE Tier-II Grant (Grant No. MOE-T2EP50222-0003). J.-Y. D. and Z. P. acknowledge
  support by the Leverhulme Trust Research Leadership Award RL-2019-015. This project
  has received funding from the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. This research
  was supported in part by Grant No. NSF PHY-2309135 to the Kavli Institute for Theoretical
  Physics (KITP). We acknowledge the use of IBM Quantum services for this work. The
  views expressed are those of the authors and do not reflect the official policy
  or position of IBM or the IBM Quantum team.
article_number: '216601'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ruizhe
  full_name: Shen, Ruizhe
  last_name: Shen
- first_name: Fang
  full_name: Qin, Fang
  last_name: Qin
- first_name: Jean-Yves Marc
  full_name: Desaules, Jean-Yves Marc
  id: 6c292945-a610-11ed-9eec-c3be1ad62a80
  last_name: Desaules
  orcid: 0000-0002-3749-6375
- first_name: Zlatko
  full_name: Papić, Zlatko
  last_name: Papić
- first_name: Ching Hua
  full_name: Lee, Ching Hua
  last_name: Lee
citation:
  ama: Shen R, Qin F, Desaules J-YM, Papić Z, Lee CH. Enhanced many-body quantum scars
    from the non-hermitian fock skin effect. <i>Physical Review Letters</i>. 2024;133(21).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.133.216601">10.1103/PhysRevLett.133.216601</a>
  apa: Shen, R., Qin, F., Desaules, J.-Y. M., Papić, Z., &#38; Lee, C. H. (2024).
    Enhanced many-body quantum scars from the non-hermitian fock skin effect. <i>Physical
    Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.133.216601">https://doi.org/10.1103/PhysRevLett.133.216601</a>
  chicago: Shen, Ruizhe, Fang Qin, Jean-Yves Marc Desaules, Zlatko Papić, and Ching
    Hua Lee. “Enhanced Many-Body Quantum Scars from the Non-Hermitian Fock Skin Effect.”
    <i>Physical Review Letters</i>. American Physical Society, 2024. <a href="https://doi.org/10.1103/PhysRevLett.133.216601">https://doi.org/10.1103/PhysRevLett.133.216601</a>.
  ieee: R. Shen, F. Qin, J.-Y. M. Desaules, Z. Papić, and C. H. Lee, “Enhanced many-body
    quantum scars from the non-hermitian fock skin effect,” <i>Physical Review Letters</i>,
    vol. 133, no. 21. American Physical Society, 2024.
  ista: Shen R, Qin F, Desaules J-YM, Papić Z, Lee CH. 2024. Enhanced many-body quantum
    scars from the non-hermitian fock skin effect. Physical Review Letters. 133(21),
    216601.
  mla: Shen, Ruizhe, et al. “Enhanced Many-Body Quantum Scars from the Non-Hermitian
    Fock Skin Effect.” <i>Physical Review Letters</i>, vol. 133, no. 21, 216601, American
    Physical Society, 2024, doi:<a href="https://doi.org/10.1103/PhysRevLett.133.216601">10.1103/PhysRevLett.133.216601</a>.
  short: R. Shen, F. Qin, J.-Y.M. Desaules, Z. Papić, C.H. Lee, Physical Review Letters
    133 (2024).
date_created: 2024-12-08T23:01:55Z
date_published: 2024-11-22T00:00:00Z
date_updated: 2026-06-10T07:52:52Z
day: '22'
department:
- _id: MaSe
doi: 10.1103/PhysRevLett.133.216601
ec_funded: 1
external_id:
  arxiv:
  - '2403.02395'
  isi:
  - '001369697800005'
  pmid:
  - '39642519'
intvolume: '       133'
isi: 1
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2403.02395
month: '11'
oa: 1
oa_version: Preprint
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
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  - id: '17471'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Enhanced many-body quantum scars from the non-hermitian fock skin effect
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 133
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '18628'
abstract:
- lang: eng
  text: 'Arctic tidewater glaciers are retreating, serving as key indicators of global
    warming. This study aims to assess how subglacial hydrology affects glacier front
    retreat by comparing two glacier–fjord models of the Hansbreen glacier: one incorporating
    a detailed subglacial hydrology model and another simplifying the subglacial discharge
    to a single channel centered in the flow line. We first validate the subglacial
    hydrology model by comparing its discharge channels with observations of plume
    activity. Simulations conducted from April to December 2010 revealed that the
    glacier front position aligns more closely with the observations in the coupled
    model than in the simplified version. Furthermore, the mass loss due to calving
    and submarine melting is greater in the coupled model, with the calving mass loss
    reaching 6 Mt by the end of the simulation compared to 4 Mt in the simplified
    model. These findings highlight the critical role of subglacial hydrology in predicting
    glacier dynamics and emphasize the importance of detailed modeling in understanding
    the responses of Arctic tidewater glaciers to climate change.'
acknowledgement: "E. De Andrés is supported by Margarita-Salas Grant No. UP2021-035
  under the Next Generation-EU program. This research was also funded by grant PID2020-113051RB-C31
  from MCIN/AEI/10.13039/501100011033/FEDER, UE.\r\nWe gratefully acknowledge Michal
  Cieply and Dariusz Ignatiuk from the Faculty of Natural Sciences, University of
  Silesia in Katowice, Poland, for their essential contributions to the Hansbreen
  data collection. We also extend our sincere thanks to Waldemar Walczowski from the
  Institute of Oceanology, Polish Academy of Sciences, Sopot, Poland, for providing
  Hansbuka data. Additionally, we would like to thank two anonymous reviewers for
  their constructive feedback, which helped to enhance the quality and clarity of
  this work."
article_number: '193'
article_processing_charge: Yes
article_type: original
author:
- first_name: Eva
  full_name: De Andrés, Eva
  last_name: De Andrés
- first_name: José M
  full_name: Muñoz Hermosilla, José M
  id: e1037a6d-646e-11ef-b402-e0ed9ab0901e
  last_name: Muñoz Hermosilla
- first_name: Kaian
  full_name: Shahateet, Kaian
  last_name: Shahateet
- first_name: Jaime
  full_name: Otero, Jaime
  last_name: Otero
citation:
  ama: 'De Andrés E, Muñoz Hermosilla JM, Shahateet K, Otero J. The importance of
    solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen,
    Svalbard. <i>Hydrology</i>. 2024;11(11). doi:<a href="https://doi.org/10.3390/hydrology11110193">10.3390/hydrology11110193</a>'
  apa: 'De Andrés, E., Muñoz Hermosilla, J. M., Shahateet, K., &#38; Otero, J. (2024).
    The importance of solving Subglaciar hydrology in modeling glacier retreat: A
    case study of Hansbreen, Svalbard. <i>Hydrology</i>. MDPI. <a href="https://doi.org/10.3390/hydrology11110193">https://doi.org/10.3390/hydrology11110193</a>'
  chicago: 'De Andrés, Eva, José M Muñoz Hermosilla, Kaian Shahateet, and Jaime Otero.
    “The Importance of Solving Subglaciar Hydrology in Modeling Glacier Retreat: A
    Case Study of Hansbreen, Svalbard.” <i>Hydrology</i>. MDPI, 2024. <a href="https://doi.org/10.3390/hydrology11110193">https://doi.org/10.3390/hydrology11110193</a>.'
  ieee: 'E. De Andrés, J. M. Muñoz Hermosilla, K. Shahateet, and J. Otero, “The importance
    of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen,
    Svalbard,” <i>Hydrology</i>, vol. 11, no. 11. MDPI, 2024.'
  ista: 'De Andrés E, Muñoz Hermosilla JM, Shahateet K, Otero J. 2024. The importance
    of solving Subglaciar hydrology in modeling glacier retreat: A case study of Hansbreen,
    Svalbard. Hydrology. 11(11), 193.'
  mla: 'De Andrés, Eva, et al. “The Importance of Solving Subglaciar Hydrology in
    Modeling Glacier Retreat: A Case Study of Hansbreen, Svalbard.” <i>Hydrology</i>,
    vol. 11, no. 11, 193, MDPI, 2024, doi:<a href="https://doi.org/10.3390/hydrology11110193">10.3390/hydrology11110193</a>.'
  short: E. De Andrés, J.M. Muñoz Hermosilla, K. Shahateet, J. Otero, Hydrology 11
    (2024).
corr_author: '1'
date_created: 2024-12-08T23:01:55Z
date_published: 2024-11-12T00:00:00Z
date_updated: 2024-12-09T09:43:48Z
day: '12'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.3390/hydrology11110193
file:
- access_level: open_access
  checksum: 0665c5bfca97782bf0b041f23dd7e8d7
  content_type: application/pdf
  creator: dernst
  date_created: 2024-12-09T09:43:33Z
  date_updated: 2024-12-09T09:43:33Z
  file_id: '18635'
  file_name: 2024_Hydrology_deAndres.pdf
  file_size: 5709093
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  success: 1
file_date_updated: 2024-12-09T09:43:33Z
has_accepted_license: '1'
intvolume: '        11'
issue: '11'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: Hydrology
publication_identifier:
  eissn:
  - 2306-5338
publication_status: published
publisher: MDPI
quality_controlled: '1'
related_material:
  record:
  - id: '18634'
    relation: used_in_publication
    status: public
scopus_import: '1'
status: public
title: 'The importance of solving Subglaciar hydrology in modeling glacier retreat:
  A case study of Hansbreen, Svalbard'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '18629'
abstract:
- lang: eng
  text: We study a three-dimensional Gross-Pitaevskii equation that describes a static
    impurity in a dipolar Bose-Einstein condensate. Our focus is on the interplay
    between the shape of the impurity and the anisotropy of the medium manifested
    in the energy and the density of the system. Without external confinement, properties
    of the system are derived with basic analytical approaches. For a system in a
    harmonic trap, the model is investigated numerically, using the split-step Crank-Nicolson
    method. Our results demonstrate that the impurity self-energy is minimized when
    its shape more closely aligns with the anisotropic character of the bath; in particular
    a prolate deformed impurity aligned with the direction of the dipoles has the
    smallest self-energy for a repulsive impurity. Our work complements studies of
    impurities in Bose gases with zero-range interactions and paves the way for studies
    of dipolar polarons with a Gross-Pitaevskii equation.
acknowledgement: 'The authors acknowledge that this material is based upon work supported
  by the National Science Foundation/EPSCoR RII Track-1: Emergent Quantum Materials
  and Technologies (EQUATE), Award No. OIA-2044049.'
article_number: '053317'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Neelam
  full_name: Shukla, Neelam
  last_name: Shukla
- first_name: Artem
  full_name: Volosniev, Artem
  id: 37D278BC-F248-11E8-B48F-1D18A9856A87
  last_name: Volosniev
  orcid: 0000-0003-0393-5525
- first_name: Jeremy R.
  full_name: Armstrong, Jeremy R.
  last_name: Armstrong
citation:
  ama: Shukla N, Volosniev A, Armstrong JR. Anisotropic potential immersed in a dipolar
    Bose-Einstein condensate. <i>Physical Review A</i>. 2024;110(5). doi:<a href="https://doi.org/10.1103/PhysRevA.110.053317">10.1103/PhysRevA.110.053317</a>
  apa: Shukla, N., Volosniev, A., &#38; Armstrong, J. R. (2024). Anisotropic potential
    immersed in a dipolar Bose-Einstein condensate. <i>Physical Review A</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevA.110.053317">https://doi.org/10.1103/PhysRevA.110.053317</a>
  chicago: Shukla, Neelam, Artem Volosniev, and Jeremy R. Armstrong. “Anisotropic
    Potential Immersed in a Dipolar Bose-Einstein Condensate.” <i>Physical Review
    A</i>. American Physical Society, 2024. <a href="https://doi.org/10.1103/PhysRevA.110.053317">https://doi.org/10.1103/PhysRevA.110.053317</a>.
  ieee: N. Shukla, A. Volosniev, and J. R. Armstrong, “Anisotropic potential immersed
    in a dipolar Bose-Einstein condensate,” <i>Physical Review A</i>, vol. 110, no.
    5. American Physical Society, 2024.
  ista: Shukla N, Volosniev A, Armstrong JR. 2024. Anisotropic potential immersed
    in a dipolar Bose-Einstein condensate. Physical Review A. 110(5), 053317.
  mla: Shukla, Neelam, et al. “Anisotropic Potential Immersed in a Dipolar Bose-Einstein
    Condensate.” <i>Physical Review A</i>, vol. 110, no. 5, 053317, American Physical
    Society, 2024, doi:<a href="https://doi.org/10.1103/PhysRevA.110.053317">10.1103/PhysRevA.110.053317</a>.
  short: N. Shukla, A. Volosniev, J.R. Armstrong, Physical Review A 110 (2024).
date_created: 2024-12-08T23:01:55Z
date_published: 2024-11-18T00:00:00Z
date_updated: 2025-09-08T14:56:22Z
day: '18'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.110.053317
external_id:
  arxiv:
  - '2406.00217'
  isi:
  - '001362623400019'
intvolume: '       110'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2406.00217
month: '11'
oa: 1
oa_version: Preprint
publication: Physical Review A
publication_identifier:
  eissn:
  - 2469-9934
  issn:
  - 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anisotropic potential immersed in a dipolar Bose-Einstein condensate
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '18630'
abstract:
- lang: eng
  text: 'Markov chains are the de facto finite-state model for stochastic dynamical
    systems, and Markov decision processes (MDPs) extend Markov chains by incorporating
    non-deterministic behaviors. Given an MDP and rewards on states, a classical optimization
    criterion is the maximal expected total reward where the MDP stops after T steps,
    which can be computed by a simple dynamic programming algorithm. We consider a
    natural generalization of the problem where the stopping times can be chosen according
    to a probability distribution, such that the expected stopping time is T, to optimize
    the expected total reward. Quite surprisingly we establish inter-reducibility
    of the expected stopping-time problem for Markov chains with the Positivity problem
    (which is related to the well-known Skolem problem), for which establishing either
    decidability or undecidability would be a major breakthrough. Given the hardness
    of the exact problem, we consider the approximate version of the problem: we show
    that it can be solved in exponential time for Markov chains and in exponential
    space for MDPs.'
acknowledgement: The authors are grateful to the anonymous reviewers of LICS 2021
  and of a previous version of this paper for insightful comments that helped improving
  the presentation. The research presented in this paper was partially supported by
  the grant ERC CoG 863818 (ForM-SMArt).
alternative_title:
- LMCS
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: Chatterjee K, Doyen L. Stochastic processes with expected stopping time. <i>Logical
    Methods in Computer Science</i>. 2024;20(4):11:1-11:34. doi:<a href="https://doi.org/10.46298/lmcs-20(4:11)2024">10.46298/lmcs-20(4:11)2024</a>
  apa: Chatterjee, K., &#38; Doyen, L. (2024). Stochastic processes with expected
    stopping time. <i>Logical Methods in Computer Science</i>. EPI Sciences. <a href="https://doi.org/10.46298/lmcs-20(4:11)2024">https://doi.org/10.46298/lmcs-20(4:11)2024</a>
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected
    Stopping Time.” <i>Logical Methods in Computer Science</i>. EPI Sciences, 2024.
    <a href="https://doi.org/10.46298/lmcs-20(4:11)2024">https://doi.org/10.46298/lmcs-20(4:11)2024</a>.
  ieee: K. Chatterjee and L. Doyen, “Stochastic processes with expected stopping time,”
    <i>Logical Methods in Computer Science</i>, vol. 20, no. 4. EPI Sciences, p. 11:1-11:34,
    2024.
  ista: Chatterjee K, Doyen L. 2024. Stochastic processes with expected stopping time.
    Logical Methods in Computer Science. 20(4), 11:1-11:34.
  mla: Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected
    Stopping Time.” <i>Logical Methods in Computer Science</i>, vol. 20, no. 4, EPI
    Sciences, 2024, p. 11:1-11:34, doi:<a href="https://doi.org/10.46298/lmcs-20(4:11)2024">10.46298/lmcs-20(4:11)2024</a>.
  short: K. Chatterjee, L. Doyen, Logical Methods in Computer Science 20 (2024) 11:1-11:34.
corr_author: '1'
date_created: 2024-12-08T23:01:56Z
date_published: 2024-11-12T00:00:00Z
date_updated: 2025-09-08T14:54:14Z
day: '12'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.46298/lmcs-20(4:11)2024
ec_funded: 1
external_id:
  arxiv:
  - '2104.07278'
  isi:
  - '001367316400002'
file:
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  checksum: b3315c74ce18ce0a30ed33d8c9972992
  content_type: application/pdf
  creator: dernst
  date_created: 2024-12-09T08:38:48Z
  date_updated: 2024-12-09T08:38:48Z
  file_id: '18633'
  file_name: 2024_LMCS_Chatterjee.pdf
  file_size: 416814
  relation: main_file
  success: 1
file_date_updated: 2024-12-09T08:38:48Z
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '4'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 11:1-11:34
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Logical Methods in Computer Science
publication_identifier:
  eissn:
  - 1860-5974
publication_status: published
publisher: EPI Sciences
quality_controlled: '1'
related_material:
  record:
  - id: '10004'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Stochastic processes with expected stopping time
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 20
year: '2024'
...
---
OA_type: closed access
_id: '18651'
abstract:
- lang: eng
  text: Embryo axis formation begins with the localized expression of biochemical
    signals, which organize cell movements and determine cell fate. A quail study
    finds that tissue contraction and resulting long-range changes in tissue tension
    restrict the area where these biochemical signals are expressed.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Naoya
  full_name: Hino, Naoya
  id: 5299a9ce-7679-11eb-a7bc-d1e62b936307
  last_name: Hino
- first_name: Carolina
  full_name: Santos Fernandes Lasbarrères Camelo, Carolina
  id: 6347dca5-074c-11ed-af92-a80f860d9d5b
  last_name: Santos Fernandes Lasbarrères Camelo
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: 'Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. Development:
    Turing mechanics. <i>Current Biology</i>. 2024;34(24):R1230-R1232. doi:<a href="https://doi.org/10.1016/j.cub.2024.10.065">10.1016/j.cub.2024.10.065</a>'
  apa: 'Hino, N., Santos Fernandes Lasbarrères Camelo, C., &#38; Heisenberg, C.-P.
    J. (2024). Development: Turing mechanics. <i>Current Biology</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.cub.2024.10.065">https://doi.org/10.1016/j.cub.2024.10.065</a>'
  chicago: 'Hino, Naoya, Carolina Santos Fernandes Lasbarrères Camelo, and Carl-Philipp
    J Heisenberg. “Development: Turing Mechanics.” <i>Current Biology</i>. Elsevier,
    2024. <a href="https://doi.org/10.1016/j.cub.2024.10.065">https://doi.org/10.1016/j.cub.2024.10.065</a>.'
  ieee: 'N. Hino, C. Santos Fernandes Lasbarrères Camelo, and C.-P. J. Heisenberg,
    “Development: Turing mechanics,” <i>Current Biology</i>, vol. 34, no. 24. Elsevier,
    pp. R1230–R1232, 2024.'
  ista: 'Hino N, Santos Fernandes Lasbarrères Camelo C, Heisenberg C-PJ. 2024. Development:
    Turing mechanics. Current Biology. 34(24), R1230–R1232.'
  mla: 'Hino, Naoya, et al. “Development: Turing Mechanics.” <i>Current Biology</i>,
    vol. 34, no. 24, Elsevier, 2024, pp. R1230–32, doi:<a href="https://doi.org/10.1016/j.cub.2024.10.065">10.1016/j.cub.2024.10.065</a>.'
  short: N. Hino, C. Santos Fernandes Lasbarrères Camelo, C.-P.J. Heisenberg, Current
    Biology 34 (2024) R1230–R1232.
corr_author: '1'
date_created: 2024-12-15T23:01:49Z
date_published: 2024-12-16T00:00:00Z
date_updated: 2025-09-09T11:51:15Z
day: '16'
department:
- _id: CaHe
doi: 10.1016/j.cub.2024.10.065
external_id:
  isi:
  - '001392077000001'
  pmid:
  - '39689690'
intvolume: '        34'
isi: 1
issue: '24'
language:
- iso: eng
month: '12'
oa_version: None
page: R1230-R1232
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Development: Turing mechanics'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 34
year: '2024'
...
---
OA_type: closed access
_id: '18652'
abstract:
- lang: eng
  text: 'Over the last 70 years, information theory and coding has enabled communication
    technologies that have had an astounding impact on our lives. This is possible
    due to the match between encoding/decoding strategies and corresponding channel
    models. Traditional studies of channels have taken one of two extremes: Shannon-theoretic
    models are inherently average-case in which channel noise is governed by a memoryless
    stochastic process, whereas coding-theoretic (referred to as “Hamming”) models
    take a worst-case, adversarial, view of the noise. However, for several existing
    and emerging communication systems the Shannon/average-case view may be too optimistic,
    whereas the Hamming/worstcase view may be too pessimistic. This monograph takes
    up the challenge of studying adversarial channel models that lie between the Shannon
    and Hamming extremes.'
article_processing_charge: No
article_type: original
author:
- first_name: Bikash Kumar
  full_name: Dey, Bikash Kumar
  last_name: Dey
- first_name: Sidharth
  full_name: Jaggi, Sidharth
  last_name: Jaggi
- first_name: Michael
  full_name: Langberg, Michael
  last_name: Langberg
- first_name: Anand D.
  full_name: Sarwate, Anand D.
  last_name: Sarwate
- first_name: Yihan
  full_name: Zhang, Yihan
  id: 2ce5da42-b2ea-11eb-bba5-9f264e9d002c
  last_name: Zhang
  orcid: 0000-0002-6465-6258
citation:
  ama: 'Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. Codes for adversaries: Between
    worst-case and average-case jamming. <i>Foundations and Trends in Communications
    and Information Theory</i>. 2024;21(3-4):300-588. doi:<a href="https://doi.org/10.1561/0100000112">10.1561/0100000112</a>'
  apa: 'Dey, B. K., Jaggi, S., Langberg, M., Sarwate, A. D., &#38; Zhang, Y. (2024).
    Codes for adversaries: Between worst-case and average-case jamming. <i>Foundations
    and Trends in Communications and Information Theory</i>. Now Publishers. <a href="https://doi.org/10.1561/0100000112">https://doi.org/10.1561/0100000112</a>'
  chicago: 'Dey, Bikash Kumar, Sidharth Jaggi, Michael Langberg, Anand D. Sarwate,
    and Yihan Zhang. “Codes for Adversaries: Between Worst-Case and Average-Case Jamming.”
    <i>Foundations and Trends in Communications and Information Theory</i>. Now Publishers,
    2024. <a href="https://doi.org/10.1561/0100000112">https://doi.org/10.1561/0100000112</a>.'
  ieee: 'B. K. Dey, S. Jaggi, M. Langberg, A. D. Sarwate, and Y. Zhang, “Codes for
    adversaries: Between worst-case and average-case jamming,” <i>Foundations and
    Trends in Communications and Information Theory</i>, vol. 21, no. 3–4. Now Publishers,
    pp. 300–588, 2024.'
  ista: 'Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. 2024. Codes for adversaries:
    Between worst-case and average-case jamming. Foundations and Trends in Communications
    and Information Theory. 21(3–4), 300–588.'
  mla: 'Dey, Bikash Kumar, et al. “Codes for Adversaries: Between Worst-Case and Average-Case
    Jamming.” <i>Foundations and Trends in Communications and Information Theory</i>,
    vol. 21, no. 3–4, Now Publishers, 2024, pp. 300–588, doi:<a href="https://doi.org/10.1561/0100000112">10.1561/0100000112</a>.'
  short: B.K. Dey, S. Jaggi, M. Langberg, A.D. Sarwate, Y. Zhang, Foundations and
    Trends in Communications and Information Theory 21 (2024) 300–588.
corr_author: '1'
date_created: 2024-12-15T23:01:50Z
date_published: 2024-12-03T00:00:00Z
date_updated: 2024-12-16T10:38:44Z
day: '03'
department:
- _id: MaMo
doi: 10.1561/0100000112
intvolume: '        21'
issue: 3-4
language:
- iso: eng
month: '12'
oa_version: None
page: 300-588
publication: Foundations and Trends in Communications and Information Theory
publication_identifier:
  eissn:
  - 1567-2328
  issn:
  - 1567-2190
publication_status: published
publisher: Now Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Codes for adversaries: Between worst-case and average-case jamming'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18653'
abstract:
- lang: eng
  text: Charge sensing is a sensitive technique for probing quantum devices, of particular
    importance for spin-qubit readout. To achieve good readout sensitivities, the
    proximity of the charge sensor to the device to be measured is a necessity. However,
    this proximity also means that the operation of the device affects, in turn, the
    sensor tuning and ultimately the readout sensitivity. We present an approach for
    compensating for this crosstalk effect allowing for the gate voltages of the measured
    device to be swept in a 1-V × 1-V window while maintaining a sensor configuration
    chosen by a Bayesian optimizer. Our algorithm will hopefully be a major contribution
    to the suite of fully automated solutions required for the operation of large
    quantum device architectures.
acknowledged_ssus:
- _id: NanoFab
acknowledgement: We thank Nicholas Sim for providing help with the experiment and
  Sebastian Orbell for helpful discussions. This work was supported by the Royal Society,
  the Engineering and Physical Sciences Research Council (EPSRC) National Quantum
  Technology Hub in Networked Quantum Information Technology (Grant No. EP/M013243/1),
  Quantum Technology Capital (Grant No. EP/N014995/1), the EPSRC Platform Grant (Grant
  No. EP/R029229/1), the European Research Council (Grant Agreement No. 948932), the
  Scientific Service Units of the Institute of Science and Technology Austria through
  resources provided by the nanofabrication facility and, the FWF-I 05060 and HORIZON-RIA
  101069515 projects.
article_number: '064026'
article_processing_charge: No
article_type: original
author:
- first_name: Joseph
  full_name: Hickie, Joseph
  last_name: Hickie
- first_name: Barnaby
  full_name: Van Straaten, Barnaby
  last_name: Van Straaten
- first_name: Federico
  full_name: Fedele, Federico
  last_name: Fedele
- first_name: Daniel
  full_name: Jirovec, Daniel
  id: 4C473F58-F248-11E8-B48F-1D18A9856A87
  last_name: Jirovec
  orcid: 0000-0002-7197-4801
- first_name: Andrea
  full_name: Ballabio, Andrea
  last_name: Ballabio
- first_name: Daniel
  full_name: Chrastina, Daniel
  last_name: Chrastina
- first_name: Giovanni
  full_name: Isella, Giovanni
  last_name: Isella
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
- first_name: Natalia
  full_name: Ares, Natalia
  last_name: Ares
citation:
  ama: Hickie J, Van Straaten B, Fedele F, et al. Automated long-range compensation
    of an rf quantum dot sensor. <i>Physical Review Applied</i>. 2024;22(6). doi:<a
    href="https://doi.org/10.1103/PhysRevApplied.22.064026">10.1103/PhysRevApplied.22.064026</a>
  apa: Hickie, J., Van Straaten, B., Fedele, F., Jirovec, D., Ballabio, A., Chrastina,
    D., … Ares, N. (2024). Automated long-range compensation of an rf quantum dot
    sensor. <i>Physical Review Applied</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevApplied.22.064026">https://doi.org/10.1103/PhysRevApplied.22.064026</a>
  chicago: Hickie, Joseph, Barnaby Van Straaten, Federico Fedele, Daniel Jirovec,
    Andrea Ballabio, Daniel Chrastina, Giovanni Isella, Georgios Katsaros, and Natalia
    Ares. “Automated Long-Range Compensation of an Rf Quantum Dot Sensor.” <i>Physical
    Review Applied</i>. American Physical Society, 2024. <a href="https://doi.org/10.1103/PhysRevApplied.22.064026">https://doi.org/10.1103/PhysRevApplied.22.064026</a>.
  ieee: J. Hickie <i>et al.</i>, “Automated long-range compensation of an rf quantum
    dot sensor,” <i>Physical Review Applied</i>, vol. 22, no. 6. American Physical
    Society, 2024.
  ista: Hickie J, Van Straaten B, Fedele F, Jirovec D, Ballabio A, Chrastina D, Isella
    G, Katsaros G, Ares N. 2024. Automated long-range compensation of an rf quantum
    dot sensor. Physical Review Applied. 22(6), 064026.
  mla: Hickie, Joseph, et al. “Automated Long-Range Compensation of an Rf Quantum
    Dot Sensor.” <i>Physical Review Applied</i>, vol. 22, no. 6, 064026, American
    Physical Society, 2024, doi:<a href="https://doi.org/10.1103/PhysRevApplied.22.064026">10.1103/PhysRevApplied.22.064026</a>.
  short: J. Hickie, B. Van Straaten, F. Fedele, D. Jirovec, A. Ballabio, D. Chrastina,
    G. Isella, G. Katsaros, N. Ares, Physical Review Applied 22 (2024).
date_created: 2024-12-15T23:01:50Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2025-09-09T11:47:52Z
day: '01'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1103/PhysRevApplied.22.064026
external_id:
  isi:
  - '001379155900003'
file:
- access_level: open_access
  checksum: bc29a40819abc4969867b6cd6563f7ad
  content_type: application/pdf
  creator: dernst
  date_created: 2024-12-16T11:13:48Z
  date_updated: 2024-12-16T11:13:48Z
  file_id: '18662'
  file_name: 2024_PhysicalReviewApplied_Hickie.pdf
  file_size: 3560132
  relation: main_file
  success: 1
file_date_updated: 2024-12-16T11:13:48Z
has_accepted_license: '1'
intvolume: '        22'
isi: 1
issue: '6'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: c0977eea-5a5b-11eb-8a69-a862db0cf4d1
  grant_number: I05060
  name: High impedance circuit quantum electrodynamics with hole spins
- _id: 34c0acea-11ca-11ed-8bc3-8775e10fd452
  grant_number: '101069515'
  name: Integrated Germanium Quantum Technology
publication: Physical Review Applied
publication_identifier:
  eissn:
  - 2331-7019
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Automated long-range compensation of an rf quantum dot sensor
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 22
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '18654'
abstract:
- lang: eng
  text: "We compute the rotational anisotropy of the free energy of \U0001D6FC−RuCl3
    in an external magnetic field. This quantity, known as the magnetotropic susceptibility,
    \U0001D458, relates to the second derivative of the free energy with respect to
    the angle of rotation. We have used approximation-free, auxiliary-field quantum
    Monte Carlo simulations for a realistic model of \U0001D6FC−RuCl3 and optimized
    the path integral to alleviate the negative sign problem. This allows us to reach
    temperatures down to 30K—an energy scale below the dominant Kitaev coupling. We
    demonstrate that the magnetotropic spin susceptibility in this model of \U0001D6FC−RuCl3
    displays scaling behavior \U0001D458=\U0001D447⁢\U0001D453⁡(\U0001D435/\U0001D447)
    at high temperatures. Once the uniform susceptibility departs from the Curie law
    (i.e., at the energy scale of the exchange interactions), it appears to transition
    to an emergent scalinglike behavior, characterized by a different function \U0001D453
    at lower temperatures, stemming from the locality of torque fluctuations. We observe
    a remarkable numerical match between experiment and simulations and we also find
    qualitative agreement with the pure Kitaev model. In comparison, for the XXZ Heisenberg
    Hamiltonian, the scaling \U0001D458=\U0001D447⁢\U0001D453⁡(\U0001D435/\U0001D447)
    breaks down at a temperature scale where the uniform spin susceptibility deviates
    from the Curie law and never reemerges at low temperatures."
acknowledgement: We gratefully acknowledge the Gauss Centre for Supercomputing e.V.
  for funding this project by providing computing time on the GCS Supercomputer SUPERMUC-NG
  at the Leibniz Supercomputing Centre (Project No. pn73xu) as well as the scientific
  support and HPC resources provided by the Erlangen National High Performance Computing
  Center (NHR@FAU) of the Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)
  under the NHR Project b133ae. NHR funding is provided by federal and Bavarian state
  authorities. NHR@FAU hardware is partially funded by the German Research Foundation
  (DFG) – 440719683. T.S. thanks funding from the Deutsche Forschungsgemeinschaft
  under Grant No. SA 3986/1-1 as well as the Würzburg-Dresden Cluster of Excellence
  on Complexity and Topology in Quantum Matter ct.qmat (EXC 2147, Project ID 390858490).
  F.F.A. acknowledges financial support from the German Research Foundation (DFG)
  under the Grant AS 120/16-1 (Project No. 493886309) that is part of the collaborative
  research project SFB Q-M&S funded by the Austrian Science Fund (FWF) F 86. K.A.M.
  thanks financial support from the Austrian Science Fund, SFB F 86, Q-M&S.
article_number: L201114
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Toshihiro
  full_name: Sato, Toshihiro
  last_name: Sato
- first_name: B. J.
  full_name: Ramshaw, B. J.
  last_name: Ramshaw
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: Fakher F.
  full_name: Assaad, Fakher F.
  last_name: Assaad
citation:
  ama: 'Sato T, Ramshaw BJ, Modic KA, Assaad FF. Scale-invariant magnetic anisotropy
    in α-RuCl3: A quantum Monte Carlo study. <i>Physical Review B</i>. 2024;110(20).
    doi:<a href="https://doi.org/10.1103/PhysRevB.110.L201114">10.1103/PhysRevB.110.L201114</a>'
  apa: 'Sato, T., Ramshaw, B. J., Modic, K. A., &#38; Assaad, F. F. (2024). Scale-invariant
    magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study. <i>Physical Review
    B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.110.L201114">https://doi.org/10.1103/PhysRevB.110.L201114</a>'
  chicago: 'Sato, Toshihiro, B. J. Ramshaw, Kimberly A Modic, and Fakher F. Assaad.
    “Scale-Invariant Magnetic Anisotropy in α-RuCl3: A Quantum Monte Carlo Study.”
    <i>Physical Review B</i>. American Physical Society, 2024. <a href="https://doi.org/10.1103/PhysRevB.110.L201114">https://doi.org/10.1103/PhysRevB.110.L201114</a>.'
  ieee: 'T. Sato, B. J. Ramshaw, K. A. Modic, and F. F. Assaad, “Scale-invariant magnetic
    anisotropy in α-RuCl3: A quantum Monte Carlo study,” <i>Physical Review B</i>,
    vol. 110, no. 20. American Physical Society, 2024.'
  ista: 'Sato T, Ramshaw BJ, Modic KA, Assaad FF. 2024. Scale-invariant magnetic anisotropy
    in α-RuCl3: A quantum Monte Carlo study. Physical Review B. 110(20), L201114.'
  mla: 'Sato, Toshihiro, et al. “Scale-Invariant Magnetic Anisotropy in α-RuCl3: A
    Quantum Monte Carlo Study.” <i>Physical Review B</i>, vol. 110, no. 20, L201114,
    American Physical Society, 2024, doi:<a href="https://doi.org/10.1103/PhysRevB.110.L201114">10.1103/PhysRevB.110.L201114</a>.'
  short: T. Sato, B.J. Ramshaw, K.A. Modic, F.F. Assaad, Physical Review B 110 (2024).
date_created: 2024-12-15T23:01:50Z
date_published: 2024-11-15T00:00:00Z
date_updated: 2025-09-09T11:48:35Z
day: '15'
department:
- _id: KiMo
doi: 10.1103/PhysRevB.110.L201114
external_id:
  arxiv:
  - '2312.03080'
  isi:
  - '001447562900001'
intvolume: '       110'
isi: 1
issue: '20'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2312.03080
month: '11'
oa: 1
oa_version: Preprint
project:
- _id: 34ac8b51-11ca-11ed-8bc3-86c15daa9f8f
  grant_number: F8607
  name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems:
    Scale- invariance in entangled quantum spin systems'
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Scale-invariant magnetic anisotropy in α-RuCl3: A quantum Monte Carlo study'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: repository
OA_type: gold
_id: '18655'
abstract:
- lang: eng
  text: "Let Qd be the d-dimensional binary hypercube. We say that P={v1,…,vk} is
    an increasing path of length k−1 in Qd, if for every i∈[k−1] the edge vivi+1 is
    obtained by switching some zero coordinate in vi to a one coordinate in vi+1.\r\nForm
    a random subgraph Qdp by retaining each edge in E(Qd) independently with probability
    p. We show that there is a phase transition with respect to the length of a longest
    increasing path around p=ed. Let α be a constant and let p=αd. When α<e, then
    there exists a δ∈[0,1) such that whp a longest increasing path in Qdp is of length
    at most δd. On the other hand, when α>e, whp there is a path of length d−2 in
    Qdp, and in fact, whether it is of length d−2,d−1, or d depends on whether the
    all-zero and all-one vertices percolate or not."
acknowledgement: "Research supported by the European Union’s Horizon 2020 research
  and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413.\r\nThe
  authors wish to thank Ross Pinsky for his comments on an earlier version of the
  paper, and for bringing reference [12] to our attention. The authors are grateful
  to the anonymous referees for their helpful comments and suggestions."
article_number: '70'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Michael
  full_name: Anastos, Michael
  id: 0b2a4358-bb35-11ec-b7b9-e3279b593dbb
  last_name: Anastos
- first_name: Sahar
  full_name: Diskin, Sahar
  last_name: Diskin
- first_name: Dor
  full_name: Elboim, Dor
  last_name: Elboim
- first_name: Michael
  full_name: Krivelevich, Michael
  last_name: Krivelevich
citation:
  ama: Anastos M, Diskin S, Elboim D, Krivelevich M. Climbing up a random subgraph
    of the hypercube. <i>Electronic Communications in Probability</i>. 2024;29. doi:<a
    href="https://doi.org/10.1214/24-ECP639">10.1214/24-ECP639</a>
  apa: Anastos, M., Diskin, S., Elboim, D., &#38; Krivelevich, M. (2024). Climbing
    up a random subgraph of the hypercube. <i>Electronic Communications in Probability</i>.
    Duke University Press. <a href="https://doi.org/10.1214/24-ECP639">https://doi.org/10.1214/24-ECP639</a>
  chicago: Anastos, Michael, Sahar Diskin, Dor Elboim, and Michael Krivelevich. “Climbing
    up a Random Subgraph of the Hypercube.” <i>Electronic Communications in Probability</i>.
    Duke University Press, 2024. <a href="https://doi.org/10.1214/24-ECP639">https://doi.org/10.1214/24-ECP639</a>.
  ieee: M. Anastos, S. Diskin, D. Elboim, and M. Krivelevich, “Climbing up a random
    subgraph of the hypercube,” <i>Electronic Communications in Probability</i>, vol.
    29. Duke University Press, 2024.
  ista: Anastos M, Diskin S, Elboim D, Krivelevich M. 2024. Climbing up a random subgraph
    of the hypercube. Electronic Communications in Probability. 29, 70.
  mla: Anastos, Michael, et al. “Climbing up a Random Subgraph of the Hypercube.”
    <i>Electronic Communications in Probability</i>, vol. 29, 70, Duke University
    Press, 2024, doi:<a href="https://doi.org/10.1214/24-ECP639">10.1214/24-ECP639</a>.
  short: M. Anastos, S. Diskin, D. Elboim, M. Krivelevich, Electronic Communications
    in Probability 29 (2024).
corr_author: '1'
date_created: 2024-12-15T23:01:51Z
date_published: 2024-11-24T00:00:00Z
date_updated: 2025-09-09T11:46:53Z
day: '24'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.1214/24-ECP639
ec_funded: 1
external_id:
  arxiv:
  - '2311.16631'
  isi:
  - '001356019700001'
file:
- access_level: open_access
  checksum: 307a9d049325e6ca9bfe8b4a1f275983
  content_type: application/pdf
  creator: dernst
  date_created: 2024-12-16T07:33:34Z
  date_updated: 2024-12-16T07:33:34Z
  file_id: '18657'
  file_name: 2024_ElectrCommProbability_Anastos.pdf
  file_size: 530169
  relation: main_file
  success: 1
file_date_updated: 2024-12-16T07:33:34Z
has_accepted_license: '1'
intvolume: '        29'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2311.16631
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Electronic Communications in Probability
publication_identifier:
  eissn:
  - 1083-589X
publication_status: published
publisher: Duke University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Climbing up a random subgraph of the hypercube
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 29
year: '2024'
...
---
OA_place: repository
_id: '18673'
abstract:
- lang: eng
  text: "Motivated by applications to crystalline materials, we generalize the merge
    tree and the related barcode of a filtered complex to the periodic setting in
    Euclidean space. They are invariant under isometries, changing bases, and indeed
    changing lattices. In addition, we prove stability under perturbations and provide
    an algorithm that under mild geometric conditions typically satisfied by crystalline
    materials takes O((n+m)logn) time, in which n and m are the numbers of vertices
    and edges in the quotient complex, respectively.\r\n"
acknowledgement: "Both authors are partially supported by the European Research Council
  (ERC) Horizon 2020 project\r\n‘Alpha Shape Theory Extended’, grant no. 788183. The
  first author is also partially supported by the DFG\r\nCollaborative Research Center
  TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund\r\n(FWF),
  grant no. I 02979-N35."
article_processing_charge: No
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
citation:
  ama: Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>
  apa: Edelsbrunner, H., &#38; Heiss, T. (n.d.). Merge trees of periodic filtrations.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2408.16575">https://doi.org/10.48550/arXiv.2408.16575</a>
  chicago: Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.”
    <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2408.16575">https://doi.org/10.48550/arXiv.2408.16575</a>.
  ieee: H. Edelsbrunner and T. Heiss, “Merge trees of periodic filtrations,” <i>arXiv</i>.
    .
  ista: Edelsbrunner H, Heiss T. Merge trees of periodic filtrations. arXiv, <a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>.
  mla: Edelsbrunner, Herbert, and Teresa Heiss. “Merge Trees of Periodic Filtrations.”
    <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2408.16575">10.48550/arXiv.2408.16575</a>.
  short: H. Edelsbrunner, T. Heiss, ArXiv (n.d.).
corr_author: '1'
date_created: 2024-12-18T14:06:57Z
date_published: 2024-08-29T00:00:00Z
date_updated: 2026-04-07T12:54:09Z
day: '29'
department:
- _id: HeEd
doi: 10.48550/arXiv.2408.16575
ec_funded: 1
external_id:
  arxiv:
  - '2408.16575'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2408.16575
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '18667'
    relation: dissertation_contains
    status: public
status: public
title: Merge trees of periodic filtrations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
