---
_id: '12776'
abstract:
- lang: eng
text: An improved asymptotic formula is established for the number of rational points
of bounded height on the split smooth del Pezzo surface of degree 5. The proof
uses the five conic bundle structures on the surface.
acknowledgement: This work was begun while the author was participating in the programme
on "Diophantine equations" at the Hausdorff Research Institute for Mathematics in
Bonn in 2009. The hospitality and financial support of the institute is gratefully
acknowledged. The idea of using conic bundles to study the split del Pezzo surface
of degree 5 was explained to the author by Professor Salberger. The author is very
grateful to him for his input into this project and also to Shuntaro Yamagishi for
many useful comments on an earlier version of this manuscript. While working on
this paper the author was supported by FWF grant P32428-N35.
article_processing_charge: No
article_type: original
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: Browning TD. Revisiting the Manin–Peyre conjecture for the split del Pezzo
surface of degree 5. New York Journal of Mathematics. 2022;28:1193-1229.
apa: Browning, T. D. (2022). Revisiting the Manin–Peyre conjecture for the split
del Pezzo surface of degree 5. New York Journal of Mathematics. State University
of New York.
chicago: Browning, Timothy D. “Revisiting the Manin–Peyre Conjecture for the Split
Del Pezzo Surface of Degree 5.” New York Journal of Mathematics. State
University of New York, 2022.
ieee: T. D. Browning, “Revisiting the Manin–Peyre conjecture for the split del Pezzo
surface of degree 5,” New York Journal of Mathematics, vol. 28. State University
of New York, pp. 1193–1229, 2022.
ista: Browning TD. 2022. Revisiting the Manin–Peyre conjecture for the split del
Pezzo surface of degree 5. New York Journal of Mathematics. 28, 1193–1229.
mla: Browning, Timothy D. “Revisiting the Manin–Peyre Conjecture for the Split Del
Pezzo Surface of Degree 5.” New York Journal of Mathematics, vol. 28, State
University of New York, 2022, pp. 1193–229.
short: T.D. Browning, New York Journal of Mathematics 28 (2022) 1193–1229.
corr_author: '1'
date_created: 2023-03-28T09:21:09Z
date_published: 2022-08-24T00:00:00Z
date_updated: 2025-04-15T07:39:01Z
day: '24'
ddc:
- '510'
department:
- _id: TiBr
file:
- access_level: open_access
checksum: c01e8291794a1bdb7416aa103cb68ef8
content_type: application/pdf
creator: dernst
date_created: 2023-03-30T07:09:35Z
date_updated: 2023-03-30T07:09:35Z
file_id: '12778'
file_name: 2022_NYJM_Browning.pdf
file_size: 897267
relation: main_file
success: 1
file_date_updated: 2023-03-30T07:09:35Z
has_accepted_license: '1'
intvolume: ' 28'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 1193 - 1229
project:
- _id: 26AEDAB2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P32428
name: New frontiers of the Manin conjecture
publication: New York Journal of Mathematics
publication_identifier:
issn:
- 1076-9803
publication_status: published
publisher: State University of New York
quality_controlled: '1'
status: public
title: Revisiting the Manin–Peyre conjecture for the split del Pezzo surface of degree
5
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2022'
...
---
_id: '12793'
abstract:
- lang: eng
text: "Let F be a global function field with constant field Fq. Let G be a reductive
group over Fq. We establish a variant of Arthur's truncated kernel for G and for
its Lie algebra which generalizes Arthur's original construction. We establish
a coarse geometric expansion for our variant truncation.\r\nAs applications, we
consider some existence and uniqueness problems of some cuspidal automorphic representations
for the functions field of the projective line P1Fq with two points of ramifications."
acknowledgement: 'I’d like to thank Prof. Chaudouard for introducing me to this area.
I’d like to thank Prof. Harris for asking me the question that makes Section 10
possible. I’m grateful for the support of Prof. Hausel and IST Austria. The author
was funded by an ISTplus fellowship: This project has received funding from the
European Union’s Horizon 2020 research and innovation programme under the Marie
Skłodowska-Curie Grant Agreement No. 754411.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Hongjie
full_name: Yu, Hongjie
id: 3D7DD9BE-F248-11E8-B48F-1D18A9856A87
last_name: Yu
orcid: 0000-0001-5128-7126
citation:
ama: Yu H. A coarse geometric expansion of a variant of Arthur’s truncated traces
and some applications. Pacific Journal of Mathematics. 2022;321(1):193-237.
doi:10.2140/pjm.2022.321.193
apa: Yu, H. (2022). A coarse geometric expansion of a variant of Arthur’s truncated
traces and some applications. Pacific Journal of Mathematics. Mathematical
Sciences Publishers. https://doi.org/10.2140/pjm.2022.321.193
chicago: Yu, Hongjie. “ A Coarse Geometric Expansion of a Variant of Arthur’s Truncated
Traces and Some Applications.” Pacific Journal of Mathematics. Mathematical
Sciences Publishers, 2022. https://doi.org/10.2140/pjm.2022.321.193.
ieee: H. Yu, “ A coarse geometric expansion of a variant of Arthur’s truncated traces
and some applications,” Pacific Journal of Mathematics, vol. 321, no. 1.
Mathematical Sciences Publishers, pp. 193–237, 2022.
ista: Yu H. 2022. A coarse geometric expansion of a variant of Arthur’s truncated
traces and some applications. Pacific Journal of Mathematics. 321(1), 193–237.
mla: Yu, Hongjie. “ A Coarse Geometric Expansion of a Variant of Arthur’s Truncated
Traces and Some Applications.” Pacific Journal of Mathematics, vol. 321,
no. 1, Mathematical Sciences Publishers, 2022, pp. 193–237, doi:10.2140/pjm.2022.321.193.
short: H. Yu, Pacific Journal of Mathematics 321 (2022) 193–237.
corr_author: '1'
date_created: 2023-04-02T22:01:11Z
date_published: 2022-08-29T00:00:00Z
date_updated: 2025-04-14T07:44:01Z
day: '29'
department:
- _id: TaHa
doi: 10.2140/pjm.2022.321.193
ec_funded: 1
external_id:
arxiv:
- '2109.10245'
isi:
- '000954466300006'
intvolume: ' 321'
isi: 1
issue: '1'
keyword:
- Arthur–Selberg trace formula
- cuspidal automorphic representations
- global function fields
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2109.10245
month: '08'
oa: 1
oa_version: Preprint
page: 193-237
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Pacific Journal of Mathematics
publication_identifier:
eissn:
- 1945-5844
issn:
- 0030-8730
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: ' A coarse geometric expansion of a variant of Arthur''s truncated traces and
some applications'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 321
year: '2022'
...
---
_id: '12860'
abstract:
- lang: eng
text: 'Memorization of the relation between entities in a dataset can lead to privacy
issues when using a trained model for question answering. We introduce Relational
Memorization (RM) to understand, quantify and control this phenomenon. While bounding
general memorization can have detrimental effects on the performance of a trained
model, bounding RM does not prevent effective learning. The difference is most
pronounced when the data distribution is long-tailed, with many queries having
only few training examples: Impeding general memorization prevents effective learning,
while impeding only relational memorization still allows learning general properties
of the underlying concepts. We formalize the notion of Relational Privacy (RP)
and, inspired by Differential Privacy (DP), we provide a possible definition of
Differential Relational Privacy (DrP). These notions can be used to describe and
compute bounds on the amount of RM in a trained model. We illustrate Relational
Privacy concepts in experiments with large-scale models for Question Answering.'
article_number: '2203.16701'
article_processing_charge: No
arxiv: 1
author:
- first_name: Simone
full_name: Bombari, Simone
id: ca726dda-de17-11ea-bc14-f9da834f63aa
last_name: Bombari
- first_name: Alessandro
full_name: Achille, Alessandro
last_name: Achille
- first_name: Zijian
full_name: Wang, Zijian
last_name: Wang
- first_name: Yu-Xiang
full_name: Wang, Yu-Xiang
last_name: Wang
- first_name: Yusheng
full_name: Xie, Yusheng
last_name: Xie
- first_name: Kunwar Yashraj
full_name: Singh, Kunwar Yashraj
last_name: Singh
- first_name: Srikar
full_name: Appalaraju, Srikar
last_name: Appalaraju
- first_name: Vijay
full_name: Mahadevan, Vijay
last_name: Mahadevan
- first_name: Stefano
full_name: Soatto, Stefano
last_name: Soatto
citation:
ama: Bombari S, Achille A, Wang Z, et al. Towards differential relational privacy
and its use in question answering. arXiv. doi:10.48550/arXiv.2203.16701
apa: Bombari, S., Achille, A., Wang, Z., Wang, Y.-X., Xie, Y., Singh, K. Y., … Soatto,
S. (n.d.). Towards differential relational privacy and its use in question answering.
arXiv. https://doi.org/10.48550/arXiv.2203.16701
chicago: Bombari, Simone, Alessandro Achille, Zijian Wang, Yu-Xiang Wang, Yusheng
Xie, Kunwar Yashraj Singh, Srikar Appalaraju, Vijay Mahadevan, and Stefano Soatto.
“Towards Differential Relational Privacy and Its Use in Question Answering.” ArXiv,
n.d. https://doi.org/10.48550/arXiv.2203.16701.
ieee: S. Bombari et al., “Towards differential relational privacy and its
use in question answering,” arXiv. .
ista: Bombari S, Achille A, Wang Z, Wang Y-X, Xie Y, Singh KY, Appalaraju S, Mahadevan
V, Soatto S. Towards differential relational privacy and its use in question answering.
arXiv, 2203.16701.
mla: Bombari, Simone, et al. “Towards Differential Relational Privacy and Its Use
in Question Answering.” ArXiv, 2203.16701, doi:10.48550/arXiv.2203.16701.
short: S. Bombari, A. Achille, Z. Wang, Y.-X. Wang, Y. Xie, K.Y. Singh, S. Appalaraju,
V. Mahadevan, S. Soatto, ArXiv (n.d.).
date_created: 2023-04-23T16:11:48Z
date_published: 2022-03-30T00:00:00Z
date_updated: 2023-04-25T07:34:49Z
day: '30'
department:
- _id: GradSch
- _id: MaMo
doi: 10.48550/arXiv.2203.16701
external_id:
arxiv:
- '2203.16701'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2203.16701
month: '03'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Towards differential relational privacy and its use in question answering
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '12894'
acknowledgement: "The abstracts in this booklet are licenced under a CC BY 4.0 licence
(https://creativecommons.org/licenses/by/4.0/legalcode), except Markus Wallerberger’s
contribution at page 21, licenced under a CC BY-SA 4.0 licence (https://creativecommons.org/licenses/by-sa/4.0/legalcode).\r\n"
article_processing_charge: No
author:
- first_name: Alois
full_name: Schlögl, Alois
id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
last_name: Schlögl
orcid: 0000-0002-5621-8100
- first_name: Andrei
full_name: Hornoiu, Andrei
id: 77129392-B450-11EA-8745-D4653DDC885E
last_name: Hornoiu
- first_name: Stefano
full_name: Elefante, Stefano
id: 490F40CE-F248-11E8-B48F-1D18A9856A87
last_name: Elefante
- first_name: Stephan
full_name: Stadlbauer, Stephan
id: 4D0BC184-F248-11E8-B48F-1D18A9856A87
last_name: Stadlbauer
citation:
ama: 'Schlögl A, Hornoiu A, Elefante S, Stadlbauer S. Where is the sweet spot? A
procurement story of general purpose compute nodes. In: ASHPC22 - Austrian-Slovenian
HPC Meeting 2022. EuroCC Austria c/o Universität Wien; 2022:7. doi:10.25365/phaidra.337'
apa: 'Schlögl, A., Hornoiu, A., Elefante, S., & Stadlbauer, S. (2022). Where
is the sweet spot? A procurement story of general purpose compute nodes. In ASHPC22
- Austrian-Slovenian HPC Meeting 2022 (p. 7). Grundlsee, Austria: EuroCC Austria
c/o Universität Wien. https://doi.org/10.25365/phaidra.337'
chicago: Schlögl, Alois, Andrei Hornoiu, Stefano Elefante, and Stephan Stadlbauer.
“Where Is the Sweet Spot? A Procurement Story of General Purpose Compute Nodes.”
In ASHPC22 - Austrian-Slovenian HPC Meeting 2022, 7. EuroCC Austria c/o
Universität Wien, 2022. https://doi.org/10.25365/phaidra.337.
ieee: A. Schlögl, A. Hornoiu, S. Elefante, and S. Stadlbauer, “Where is the sweet
spot? A procurement story of general purpose compute nodes,” in ASHPC22 - Austrian-Slovenian
HPC Meeting 2022, Grundlsee, Austria, 2022, p. 7.
ista: 'Schlögl A, Hornoiu A, Elefante S, Stadlbauer S. 2022. Where is the sweet
spot? A procurement story of general purpose compute nodes. ASHPC22 - Austrian-Slovenian
HPC Meeting 2022. ASHPC: Austrian-Slovenian HPC Meeting, 7.'
mla: Schlögl, Alois, et al. “Where Is the Sweet Spot? A Procurement Story of General
Purpose Compute Nodes.” ASHPC22 - Austrian-Slovenian HPC Meeting 2022,
EuroCC Austria c/o Universität Wien, 2022, p. 7, doi:10.25365/phaidra.337.
short: A. Schlögl, A. Hornoiu, S. Elefante, S. Stadlbauer, in:, ASHPC22 - Austrian-Slovenian
HPC Meeting 2022, EuroCC Austria c/o Universität Wien, 2022, p. 7.
conference:
end_date: 2022-06-02
location: Grundlsee, Austria
name: 'ASHPC: Austrian-Slovenian HPC Meeting'
start_date: 2022-05-31
corr_author: '1'
date_created: 2023-05-05T09:13:42Z
date_published: 2022-06-02T00:00:00Z
date_updated: 2024-10-09T21:05:24Z
day: '02'
ddc:
- '000'
department:
- _id: ScienComp
doi: 10.25365/phaidra.337
file:
- access_level: open_access
checksum: e3f8c240b85422ce2190e7b203cc2563
content_type: application/pdf
creator: schloegl
date_created: 2023-05-05T09:06:00Z
date_updated: 2023-05-05T09:06:00Z
file_id: '12895'
file_name: BOOKLET_ASHPC22.pdf
file_size: 7180531
relation: main_file
success: 1
file_date_updated: 2023-05-05T09:06:00Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '7'
publication: ASHPC22 - Austrian-Slovenian HPC Meeting 2022
publication_identifier:
isbn:
- 978-3-200-08499-5
publication_status: published
publisher: EuroCC Austria c/o Universität Wien
status: public
title: Where is the sweet spot? A procurement story of general purpose compute nodes
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference_abstract
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13064'
abstract:
- lang: eng
text: Genetically informed, deep-phenotyped biobanks are an important research resource
and it is imperative that the most powerful, versatile, and efficient analysis
approaches are used. Here, we apply our recently developed Bayesian grouped mixture
of regressions model (GMRM) in the UK and Estonian Biobanks and obtain the highest
genomic prediction accuracy reported to date across 21 heritable traits. When
compared to other approaches, GMRM accuracy was greater than annotation prediction
models run in the LDAK or LDPred-funct software by 15% (SE 7%) and 14% (SE 2%),
respectively, and was 18% (SE 3%) greater than a baseline BayesR model without
single-nucleotide polymorphism (SNP) markers grouped into minor allele frequency–linkage
disequilibrium (MAF-LD) annotation categories. For height, the prediction accuracy
R 2 was 47% in a UK Biobank holdout sample, which was 76% of the estimated h SNP
2 . We then extend our GMRM prediction model to provide mixed-linear model association
(MLMA) SNP marker estimates for genome-wide association (GWAS) discovery, which
increased the independent loci detected to 16,162 in unrelated UK Biobank individuals,
compared to 10,550 from BoltLMM and 10,095 from Regenie, a 62 and 65% increase,
respectively. The average χ2 value of the leading markers increased by 15.24 (SE
0.41) for every 1% increase in prediction accuracy gained over a baseline BayesR
model across the traits. Thus, we show that modeling genetic associations accounting
for MAF and LD differences among SNP markers, and incorporating prior knowledge
of genomic function, is important for both genomic prediction and discovery in
large-scale individual-level studies.
article_processing_charge: No
author:
- first_name: Etienne
full_name: Orliac, Etienne
last_name: Orliac
- first_name: Daniel
full_name: Trejo Banos, Daniel
last_name: Trejo Banos
- first_name: Sven
full_name: Ojavee, Sven
last_name: Ojavee
- first_name: Kristi
full_name: Läll, Kristi
last_name: Läll
- first_name: Reedik
full_name: Mägi, Reedik
last_name: Mägi
- first_name: Peter
full_name: Visscher, Peter
last_name: Visscher
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: Orliac E, Trejo Banos D, Ojavee S, et al. Improving genome-wide association
discovery and genomic prediction accuracy in biobank data. 2022. doi:10.5061/DRYAD.GTHT76HMZ
apa: Orliac, E., Trejo Banos, D., Ojavee, S., Läll, K., Mägi, R., Visscher, P.,
& Robinson, M. R. (2022). Improving genome-wide association discovery and
genomic prediction accuracy in biobank data. Dryad. https://doi.org/10.5061/DRYAD.GTHT76HMZ
chicago: Orliac, Etienne, Daniel Trejo Banos, Sven Ojavee, Kristi Läll, Reedik Mägi,
Peter Visscher, and Matthew Richard Robinson. “Improving Genome-Wide Association
Discovery and Genomic Prediction Accuracy in Biobank Data.” Dryad, 2022. https://doi.org/10.5061/DRYAD.GTHT76HMZ.
ieee: E. Orliac et al., “Improving genome-wide association discovery and
genomic prediction accuracy in biobank data.” Dryad, 2022.
ista: Orliac E, Trejo Banos D, Ojavee S, Läll K, Mägi R, Visscher P, Robinson MR.
2022. Improving genome-wide association discovery and genomic prediction accuracy
in biobank data, Dryad, 10.5061/DRYAD.GTHT76HMZ.
mla: Orliac, Etienne, et al. Improving Genome-Wide Association Discovery and
Genomic Prediction Accuracy in Biobank Data. Dryad, 2022, doi:10.5061/DRYAD.GTHT76HMZ.
short: E. Orliac, D. Trejo Banos, S. Ojavee, K. Läll, R. Mägi, P. Visscher, M.R.
Robinson, (2022).
corr_author: '1'
date_created: 2023-05-23T16:28:13Z
date_published: 2022-09-02T00:00:00Z
date_updated: 2025-06-12T06:22:36Z
day: '02'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.5061/DRYAD.GTHT76HMZ
license: https://creativecommons.org/publicdomain/zero/1.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.gtht76hmz
month: '09'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '11733'
relation: used_in_publication
status: public
status: public
title: Improving genome-wide association discovery and genomic prediction accuracy
in biobank data
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13066'
abstract:
- lang: eng
text: Chromosomal inversions have been shown to play a major role in local adaptation
by suppressing recombination between alternative arrangements and maintaining
beneficial allele combinations. However, so far, their importance relative to
the remaining genome remains largely unknown. Understanding the genetic architecture
of adaptation requires better estimates of how loci of different effect sizes
contribute to phenotypic variation. Here, we used three Swedish islands where
the marine snail Littorina saxatilis has repeatedly evolved into two distinct
ecotypes along a habitat transition. We estimated the contribution of inversion
polymorphisms to phenotypic divergence while controlling for polygenic effects
in the remaining genome using a quantitative genetics framework. We confirmed
the importance of inversions but showed that contributions of loci outside inversions
are of similar magnitude, with variable proportions dependent on the trait and
the population. Some inversions showed consistent effects across all sites, whereas
others exhibited site-specific effects, indicating that the genomic basis for
replicated phenotypic divergence is only partly shared. The contributions of sexual
dimorphism as well as environmental factors to phenotypic variation were significant
but minor compared to inversions and polygenic background. Overall, this integrated
approach provides insight into the multiple mechanisms contributing to parallel
phenotypic divergence.
article_processing_charge: No
author:
- first_name: Eva
full_name: Koch, Eva
last_name: Koch
- first_name: Mark
full_name: Ravinet, Mark
last_name: Ravinet
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
- first_name: Kerstin
full_name: Jonannesson, Kerstin
last_name: Jonannesson
- first_name: Roger
full_name: Butlin, Roger
last_name: Butlin
citation:
ama: 'Koch E, Ravinet M, Westram AM, Jonannesson K, Butlin R. Data from: Genetic
architecture of repeated phenotypic divergence in Littorina saxatilis ecotype
evolution. 2022. doi:10.5061/DRYAD.M905QFV4B'
apa: 'Koch, E., Ravinet, M., Westram, A. M., Jonannesson, K., & Butlin, R. (2022).
Data from: Genetic architecture of repeated phenotypic divergence in Littorina
saxatilis ecotype evolution. Dryad. https://doi.org/10.5061/DRYAD.M905QFV4B'
chicago: 'Koch, Eva, Mark Ravinet, Anja M Westram, Kerstin Jonannesson, and Roger
Butlin. “Data from: Genetic Architecture of Repeated Phenotypic Divergence in
Littorina Saxatilis Ecotype Evolution.” Dryad, 2022. https://doi.org/10.5061/DRYAD.M905QFV4B.'
ieee: 'E. Koch, M. Ravinet, A. M. Westram, K. Jonannesson, and R. Butlin, “Data
from: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis
ecotype evolution.” Dryad, 2022.'
ista: 'Koch E, Ravinet M, Westram AM, Jonannesson K, Butlin R. 2022. Data from:
Genetic architecture of repeated phenotypic divergence in Littorina saxatilis
ecotype evolution, Dryad, 10.5061/DRYAD.M905QFV4B.'
mla: 'Koch, Eva, et al. Data from: Genetic Architecture of Repeated Phenotypic
Divergence in Littorina Saxatilis Ecotype Evolution. Dryad, 2022, doi:10.5061/DRYAD.M905QFV4B.'
short: E. Koch, M. Ravinet, A.M. Westram, K. Jonannesson, R. Butlin, (2022).
date_created: 2023-05-23T16:33:12Z
date_published: 2022-07-28T00:00:00Z
date_updated: 2023-08-04T09:42:10Z
day: '28'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5061/DRYAD.M905QFV4B
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.m905qfv4b
month: '07'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '12247'
relation: used_in_publication
status: public
status: public
title: 'Data from: Genetic architecture of repeated phenotypic divergence in Littorina
saxatilis ecotype evolution'
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13076'
abstract:
- lang: eng
text: "The source code for replicating experiments presented in the paper.\r\n\r\nThe
implementation of the designed priority schedulers can be found in Galois-2.2.1/include/Galois/WorkList/:\r\nStealingMultiQueue.h
is the StealingMultiQueue.\r\nMQOptimized/ contains MQ Optimized variants.\r\n\r\nWe
provide images that contain all the dependencies and datasets. Images can be pulled
from npostnikova/mq-based-schedulers repository, or downloaded from Zenodo. See
readme for more detail."
article_processing_charge: No
author:
- first_name: Anastasiia
full_name: Postnikova, Anastasiia
last_name: Postnikova
- first_name: Nikita
full_name: Koval, Nikita
id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
last_name: Koval
- first_name: Giorgi
full_name: Nadiradze, Giorgi
id: 3279A00C-F248-11E8-B48F-1D18A9856A87
last_name: Nadiradze
orcid: 0000-0001-5634-0731
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: Postnikova A, Koval N, Nadiradze G, Alistarh D-A. Multi-queues can be state-of-the-art
priority schedulers. 2022. doi:10.5281/ZENODO.5733408
apa: Postnikova, A., Koval, N., Nadiradze, G., & Alistarh, D.-A. (2022). Multi-queues
can be state-of-the-art priority schedulers. Zenodo. https://doi.org/10.5281/ZENODO.5733408
chicago: Postnikova, Anastasiia, Nikita Koval, Giorgi Nadiradze, and Dan-Adrian
Alistarh. “Multi-Queues Can Be State-of-the-Art Priority Schedulers.” Zenodo,
2022. https://doi.org/10.5281/ZENODO.5733408.
ieee: A. Postnikova, N. Koval, G. Nadiradze, and D.-A. Alistarh, “Multi-queues can
be state-of-the-art priority schedulers.” Zenodo, 2022.
ista: Postnikova A, Koval N, Nadiradze G, Alistarh D-A. 2022. Multi-queues can be
state-of-the-art priority schedulers, Zenodo, 10.5281/ZENODO.5733408.
mla: Postnikova, Anastasiia, et al. Multi-Queues Can Be State-of-the-Art Priority
Schedulers. Zenodo, 2022, doi:10.5281/ZENODO.5733408.
short: A. Postnikova, N. Koval, G. Nadiradze, D.-A. Alistarh, (2022).
corr_author: '1'
date_created: 2023-05-23T17:05:40Z
date_published: 2022-01-03T00:00:00Z
date_updated: 2025-04-14T13:51:59Z
day: '03'
ddc:
- '510'
department:
- _id: DaAl
doi: 10.5281/ZENODO.5733408
main_file_link:
- open_access: '1'
url: https://doi.org/10.5281/zenodo.5813846
month: '01'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
link:
- relation: software
url: https://github.com/npostnikova/mq-based-schedulers/tree/v1.1
record:
- id: '11180'
relation: used_in_publication
status: public
status: public
title: Multi-queues can be state-of-the-art priority schedulers
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13239'
abstract:
- lang: eng
text: Brains are thought to engage in predictive learning - learning to predict
upcoming stimuli - to construct an internal model of their environment. This is
especially notable for spatial navigation, as first described by Tolman’s latent
learning tasks. However, predictive learning has also been observed in sensory
cortex, in settings unrelated to spatial navigation. Apart from normative frameworks
such as active inference or efficient coding, what could be the utility of learning
to predict the patterns of occurrence of correlated stimuli? Here we show that
prediction, and thereby the construction of an internal model of sequential stimuli,
can bootstrap the learning process of a working memory task in a recurrent neural
network. We implemented predictive learning alongside working memory match-tasks,
and networks emerged to solve the prediction task first by encoding information
across time to predict upcoming stimuli, and then eavesdropped on this solution
to solve the matching task. Eavesdropping was most beneficial when neural resources
were limited. Hence, predictive learning acts as a general neural mechanism to
learn to store sensory information that can later be essential for working memory
tasks.
acknowledgement: "The authors would like to thank members of the Vogels lab and Manohar
lab, as well as Adam Packer, Andrew Saxe, Stefano Sarao Mannelli and Jacob Bakermans
for fruitful discussions and comments on earlier versions of the manuscript.\r\nTLvdP
was supported by funding from the Biotechnology and Biological Sciences Research
Council (BBSRC) [grant number BB/M011224/1]. TPV was supported by an ERC Consolidator
Grant (SYNAPSEEK). SGM was funded by a MRC Clinician Scientist Fellowship MR/P00878X
and Leverhulme Grant RPG-2018-310."
article_processing_charge: No
author:
- first_name: Thijs L.
full_name: Van Der Plas, Thijs L.
last_name: Van Der Plas
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
- first_name: Sanjay G.
full_name: Manohar, Sanjay G.
last_name: Manohar
citation:
ama: 'Van Der Plas TL, Vogels TP, Manohar SG. Predictive learning enables neural
networks to learn complex working memory tasks. In: Proceedings of Machine
Learning Research. Vol 199. ML Research Press; 2022:518-531.'
apa: Van Der Plas, T. L., Vogels, T. P., & Manohar, S. G. (2022). Predictive
learning enables neural networks to learn complex working memory tasks. In Proceedings
of Machine Learning Research (Vol. 199, pp. 518–531). ML Research Press.
chicago: Van Der Plas, Thijs L., Tim P Vogels, and Sanjay G. Manohar. “Predictive
Learning Enables Neural Networks to Learn Complex Working Memory Tasks.” In Proceedings
of Machine Learning Research, 199:518–31. ML Research Press, 2022.
ieee: T. L. Van Der Plas, T. P. Vogels, and S. G. Manohar, “Predictive learning
enables neural networks to learn complex working memory tasks,” in Proceedings
of Machine Learning Research, 2022, vol. 199, pp. 518–531.
ista: Van Der Plas TL, Vogels TP, Manohar SG. 2022. Predictive learning enables
neural networks to learn complex working memory tasks. Proceedings of Machine
Learning Research. vol. 199, 518–531.
mla: Van Der Plas, Thijs L., et al. “Predictive Learning Enables Neural Networks
to Learn Complex Working Memory Tasks.” Proceedings of Machine Learning Research,
vol. 199, ML Research Press, 2022, pp. 518–31.
short: T.L. Van Der Plas, T.P. Vogels, S.G. Manohar, in:, Proceedings of Machine
Learning Research, ML Research Press, 2022, pp. 518–531.
date_created: 2023-07-16T22:01:12Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2025-04-14T07:54:31Z
day: '01'
ddc:
- '000'
department:
- _id: TiVo
ec_funded: 1
file:
- access_level: open_access
checksum: 7530a93ef42e10b4db1e5e4b69796e93
content_type: application/pdf
creator: dernst
date_created: 2023-07-18T06:32:38Z
date_updated: 2023-07-18T06:32:38Z
file_id: '13243'
file_name: 2022_PMLR_vanderPlas.pdf
file_size: 585135
relation: main_file
success: 1
file_date_updated: 2023-07-18T06:32:38Z
has_accepted_license: '1'
intvolume: ' 199'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 518-531
project:
- _id: 0aacfa84-070f-11eb-9043-d7eb2c709234
call_identifier: H2020
grant_number: '819603'
name: Learning the shape of synaptic plasticity rules for neuronal architectures
and function through machine learning.
publication: Proceedings of Machine Learning Research
publication_identifier:
eissn:
- 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Predictive learning enables neural networks to learn complex working memory
tasks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 199
year: '2022'
...
---
_id: '13240'
abstract:
- lang: eng
text: Ustilago maydis is a biotrophic phytopathogenic fungus that causes corn smut
disease. As a well-established model system, U. maydis is genetically fully accessible
with large omics datasets available and subject to various biological questions
ranging from DNA-repair, RNA-transport, and protein secretion to disease biology.
For many genetic approaches, tight control of transgene regulation is important.
Here we established an optimised version of the Tetracycline-ON (TetON) system
for U. maydis. We demonstrate the Tetracycline concentration-dependent expression
of fluorescent protein transgenes and the system’s suitability for the induced
expression of the toxic protein BCL2 Associated X-1 (Bax1). The Golden Gate compatible
vector system contains a native minimal promoter from the mating factor a-1 encoding
gene, mfa with ten copies of the tet-regulated operator (tetO) and a codon optimised
Tet-repressor (tetR*) which is translationally fused to the native transcriptional
corepressor Mql1 (UMAG_05501). The metabolism-independent transcriptional regulator
system is functional both, in liquid culture as well as on solid media in the
presence of the inducer and can become a useful tool for toxin-antitoxin studies,
identification of antifungal proteins, and to study functions of toxic gene products
in Ustilago maydis.
acknowledgement: "The research leading to these results received funding from the
European Research Council under the European Union’s Seventh Framework Programme
ERC-2013-STG (grant agreement: 335691), the Austrian Science Fund (I 3033-B22),
the Austrian Academy of Sciences, and the Deutsche Forschungsgemeinschaft (DFG,
German Research Foundation) under Germany's Excellence Strategy EXC-2070-390732324
(PhenoRob) and DFG grant (DJ 64/5-1).\r\nWe would like to thank the GMI/IMBA/IMP
core facilities for their excellent technical support. We would like to acknowledge
Dr. Sinéad A. O’Sullivan from DZNE, University of Bonn for providing anti-GFP antibodies.
The authors are thankful to the Excellence University of Bonn for providing infrastructure
and instrumentation facilities at the INRES-Plant Pathology department."
article_number: '1029114'
article_processing_charge: Yes
article_type: original
author:
- first_name: Kishor D.
full_name: Ingole, Kishor D.
last_name: Ingole
- first_name: Nithya
full_name: Nagarajan, Nithya
last_name: Nagarajan
- first_name: Simon
full_name: Uhse, Simon
last_name: Uhse
- first_name: Caterina
full_name: Giannini, Caterina
id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
last_name: Giannini
- first_name: Armin
full_name: Djamei, Armin
last_name: Djamei
citation:
ama: Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. Tetracycline-controlled
(TetON) gene expression system for the smut fungus Ustilago maydis. Frontiers
in Fungal Biology. 2022;3. doi:10.3389/ffunb.2022.1029114
apa: Ingole, K. D., Nagarajan, N., Uhse, S., Giannini, C., & Djamei, A. (2022).
Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago
maydis. Frontiers in Fungal Biology. Frontiers Media. https://doi.org/10.3389/ffunb.2022.1029114
chicago: Ingole, Kishor D., Nithya Nagarajan, Simon Uhse, Caterina Giannini, and
Armin Djamei. “Tetracycline-Controlled (TetON) Gene Expression System for the
Smut Fungus Ustilago Maydis.” Frontiers in Fungal Biology. Frontiers Media,
2022. https://doi.org/10.3389/ffunb.2022.1029114.
ieee: K. D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, and A. Djamei, “Tetracycline-controlled
(TetON) gene expression system for the smut fungus Ustilago maydis,” Frontiers
in Fungal Biology, vol. 3. Frontiers Media, 2022.
ista: Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. 2022. Tetracycline-controlled
(TetON) gene expression system for the smut fungus Ustilago maydis. Frontiers
in Fungal Biology. 3, 1029114.
mla: Ingole, Kishor D., et al. “Tetracycline-Controlled (TetON) Gene Expression
System for the Smut Fungus Ustilago Maydis.” Frontiers in Fungal Biology,
vol. 3, 1029114, Frontiers Media, 2022, doi:10.3389/ffunb.2022.1029114.
short: K.D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, A. Djamei, Frontiers in
Fungal Biology 3 (2022).
date_created: 2023-07-16T22:01:12Z
date_published: 2022-10-19T00:00:00Z
date_updated: 2024-03-06T14:01:57Z
day: '19'
ddc:
- '579'
department:
- _id: JiFr
doi: 10.3389/ffunb.2022.1029114
file:
- access_level: open_access
checksum: 2254e0119c0749d6f7237084fefcece6
content_type: application/pdf
creator: dernst
date_created: 2023-07-17T11:46:34Z
date_updated: 2023-07-17T11:46:34Z
file_id: '13242'
file_name: 2023_FrontiersFungalBio_Ingole.pdf
file_size: 27966699
relation: main_file
success: 1
file_date_updated: 2023-07-17T11:46:34Z
has_accepted_license: '1'
intvolume: ' 3'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: Frontiers in Fungal Biology
publication_identifier:
eissn:
- 2673-6128
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tetracycline-controlled (TetON) gene expression system for the smut fungus
Ustilago maydis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2022'
...
---
_id: '13241'
abstract:
- lang: eng
text: Addressing fairness concerns about machine learning models is a crucial step
towards their long-term adoption in real-world automated systems. Many approaches
for training fair models from data have been developed and an implicit assumption
about such algorithms is that they are able to recover a fair model, despite potential
historical biases in the data. In this work we show a number of impossibility
results that indicate that there is no learning algorithm that can recover a fair
model when a proportion of the dataset is subject to arbitrary manipulations.
Specifically, we prove that there are situations in which an adversary can force
any learner to return a biased classifier, with or without degrading accuracy,
and that the strength of this bias increases for learning problems with underrepresented
protected groups in the data. Our results emphasize on the importance of studying
further data corruption models of various strength and of establishing stricter
data collection practices for fairness-aware learning.
acknowledgement: "This paper is a shortened, workshop version of Konstantinov and
Lampert (2021),\r\nhttps://arxiv.org/abs/2102.06004. For further results, including
an analysis of algorithms achieving the lower bounds from this paper, we refer to
the full version."
article_processing_charge: No
arxiv: 1
author:
- first_name: Nikola H
full_name: Konstantinov, Nikola H
id: 4B9D76E4-F248-11E8-B48F-1D18A9856A87
last_name: Konstantinov
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Konstantinov NH, Lampert C. On the impossibility of fairness-aware learning
from corrupted data. In: Proceedings of Machine Learning Research. Vol
171. ML Research Press; 2022:59-83.'
apa: Konstantinov, N. H., & Lampert, C. (2022). On the impossibility of fairness-aware
learning from corrupted data. In Proceedings of Machine Learning Research
(Vol. 171, pp. 59–83). ML Research Press.
chicago: Konstantinov, Nikola H, and Christoph Lampert. “On the Impossibility of
Fairness-Aware Learning from Corrupted Data.” In Proceedings of Machine Learning
Research, 171:59–83. ML Research Press, 2022.
ieee: N. H. Konstantinov and C. Lampert, “On the impossibility of fairness-aware
learning from corrupted data,” in Proceedings of Machine Learning Research,
2022, vol. 171, pp. 59–83.
ista: Konstantinov NH, Lampert C. 2022. On the impossibility of fairness-aware learning
from corrupted data. Proceedings of Machine Learning Research. vol. 171, 59–83.
mla: Konstantinov, Nikola H., and Christoph Lampert. “On the Impossibility of Fairness-Aware
Learning from Corrupted Data.” Proceedings of Machine Learning Research,
vol. 171, ML Research Press, 2022, pp. 59–83.
short: N.H. Konstantinov, C. Lampert, in:, Proceedings of Machine Learning Research,
ML Research Press, 2022, pp. 59–83.
corr_author: '1'
date_created: 2023-07-16T22:01:13Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2024-10-09T21:05:54Z
day: '01'
department:
- _id: ChLa
external_id:
arxiv:
- '2102.06004'
intvolume: ' 171'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2102.06004
month: '12'
oa: 1
oa_version: Preprint
page: 59-83
publication: Proceedings of Machine Learning Research
publication_identifier:
eissn:
- 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
related_material:
record:
- id: '10802'
relation: extended_version
status: public
scopus_import: '1'
status: public
title: On the impossibility of fairness-aware learning from corrupted data
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 171
year: '2022'
...
---
OA_place: publisher
OA_type: gold
_id: '19984'
abstract:
- lang: eng
text: "The first part of this paper is a survey of mathematical results on mirror
symmetry phenomena between Hitchin systems for Langlands dual groups. The second
part introduces\r\nand discusses multiplicity algebras of the Hitchin system on
Lagrangians, and considers\r\ncorresponding conjectural structures on their mirror."
acknowledgement: "The author thanks Nigel Hitchin for introducing him to Higgs bundles
during 1995–1998,\r\nsuggesting the SYZ picture for Langlands dual Hitchin systems
in 1996, and for the\r\nmore recent collaborations [29, 30]. He also thanks David
Ben-Zvi, Pierre-Henri Chaudouard, Pierre Deligne, Ron Donagi, Sergei Gukov, Jochen
Heinloth, Vadim Kaloshin,\r\nJoel Kamnitzer, Gérard Laumon, Anton Mellit, David
Nadler, Andy Neitzke, Ngô Bao\r\nChâu, Michael Thaddeus, Tony Pantev, Du Pei, Richárd
Rimányi, Leonid Rybnikov, Vivek\r\nShende, Balázs Szendrői, András Szenes, Fernando
Rodriguez-Villegas, Edward Witten,\r\nand Zhiwei Yun for discussions about the subjects
in this paper over the years. Thanks are\r\nalso due to Hülya Argüz, Jakub Löwit,
Balázs Szendrői, and Nigel Hitchin for the careful\r\nreading of the paper."
article_processing_charge: No
arxiv: 1
author:
- first_name: Tamás
full_name: Hausel, Tamás
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
orcid: 0000-0002-9582-2634
citation:
ama: 'Hausel T. Enhanced mirror symmetry for Langlands dual Hitchin systems. In:
International Congress of Mathematicians. EMS Press; 2022:2228-2249. doi:10.4171/icm2022/164'
apa: 'Hausel, T. (2022). Enhanced mirror symmetry for Langlands dual Hitchin systems.
In International Congress of Mathematicians (pp. 2228–2249). virtuel: EMS
Press. https://doi.org/10.4171/icm2022/164'
chicago: Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.”
In International Congress of Mathematicians, 2228–49. EMS Press, 2022.
https://doi.org/10.4171/icm2022/164.
ieee: T. Hausel, “Enhanced mirror symmetry for Langlands dual Hitchin systems,”
in International Congress of Mathematicians, EMS Press, 2022, pp. 2228–2249.
ista: 'Hausel T. 2022.Enhanced mirror symmetry for Langlands dual Hitchin systems.
In: International Congress of Mathematicians. , 2228–2249.'
mla: Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.”
International Congress of Mathematicians, EMS Press, 2022, pp. 2228–49,
doi:10.4171/icm2022/164.
short: T. Hausel, in:, International Congress of Mathematicians, EMS Press, 2022,
pp. 2228–2249.
conference:
end_date: 2022-07-14
location: virtuel
name: 'ICM: International Congress of Mathematicians'
start_date: 2022-07-06
corr_author: '1'
date_created: 2025-07-10T13:13:36Z
date_published: 2022-07-15T00:00:00Z
date_updated: 2025-09-24T09:12:13Z
day: '15'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.4171/icm2022/164
external_id:
arxiv:
- '2112.09455'
file:
- access_level: open_access
checksum: d2b9d4cf51c854f1082d8dc18c5853b1
content_type: application/pdf
creator: dernst
date_created: 2025-09-24T09:05:05Z
date_updated: 2025-09-24T09:05:05Z
file_id: '20387'
file_name: 2022_ICM_Hausel.pdf
file_size: 655370
relation: main_file
success: 1
file_date_updated: 2025-09-24T09:05:05Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 2228-2249
publication: International Congress of Mathematicians
publication_identifier:
eisbn:
- '9783985475582'
isbn:
- '9783985470587'
publication_status: published
publisher: EMS Press
quality_controlled: '1'
status: public
title: Enhanced mirror symmetry for Langlands dual Hitchin systems
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '15268'
abstract:
- lang: eng
text: Apolipoprotein A‐I (apoA‐I) has a key function in the reverse cholesterol
transport. However, aggregation of apoA‐I single point mutants can lead to hereditary
amyloid pathology. Although several studies have tackled the biophysical and structural
consequences introduced by these mutations, there is little information addressing
the relationship between the evolutionary and structural features that contribute
to the amyloid behavior of apoA‐I. We combined evolutionary studies, in silico
mutagenesis and molecular dynamics (MD) simulations to provide a comprehensive
analysis of the conservation and pathogenic role of the aggregation‐prone regions
(APRs) present in apoA‐I. Sequence analysis demonstrated that among the four amyloidogenic
regions described for human apoA‐I, only two (APR1 and APR4) are evolutionary
conserved across different species of Sarcopterygii. Moreover, stability analysis
carried out with the FoldX engine showed that APR1 contributes to the marginal
stability of apoA‐I. Structural properties of full‐length apoA‐I models suggest
that aggregation is avoided by placing APRs into highly packed and rigid portions
of its native fold. Compared to silent variants extracted from the gnomAD database,
the thermodynamic and pathogenic impact of amyloid mutations showed evidence of
a higher destabilizing effect. MD simulations of the amyloid variant G26R evidenced
the partial unfolding of the alpha‐helix bundle with the concomitant exposure
of APR1 to the solvent, suggesting an insight into the early steps involved in
its aggregation. Our findings highlight APR1 as a relevant component for apoA‐I
structural integrity and emphasize a destabilizing effect of amyloid variants
that leads to the exposure of this region.
article_processing_charge: No
article_type: original
author:
- first_name: Romina A.
full_name: Gisonno, Romina A.
last_name: Gisonno
- first_name: Tomas
full_name: Masson, Tomas
id: 93ac43e8-8599-11eb-9b86-f6efb0a4c207
last_name: Masson
orcid: 0000-0002-2634-6283
- first_name: Nahuel A.
full_name: Ramella, Nahuel A.
last_name: Ramella
- first_name: Exequiel E.
full_name: Barrera, Exequiel E.
last_name: Barrera
- first_name: Víctor
full_name: Romanowski, Víctor
last_name: Romanowski
- first_name: M. Alejandra
full_name: Tricerri, M. Alejandra
last_name: Tricerri
citation:
ama: 'Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA. Evolutionary
and structural constraints influencing apolipoprotein A‐I amyloid behavior. Proteins:
Structure, Function, and Bioinformatics. 2022;90(1):258-269. doi:10.1002/prot.26217'
apa: 'Gisonno, R. A., Masson, T., Ramella, N. A., Barrera, E. E., Romanowski, V.,
& Tricerri, M. A. (2022). Evolutionary and structural constraints influencing
apolipoprotein A‐I amyloid behavior. Proteins: Structure, Function, and Bioinformatics.
Wiley. https://doi.org/10.1002/prot.26217'
chicago: 'Gisonno, Romina A., Tomas Masson, Nahuel A. Ramella, Exequiel E. Barrera,
Víctor Romanowski, and M. Alejandra Tricerri. “Evolutionary and Structural Constraints
Influencing Apolipoprotein A‐I Amyloid Behavior.” Proteins: Structure, Function,
and Bioinformatics. Wiley, 2022. https://doi.org/10.1002/prot.26217.'
ieee: 'R. A. Gisonno, T. Masson, N. A. Ramella, E. E. Barrera, V. Romanowski, and
M. A. Tricerri, “Evolutionary and structural constraints influencing apolipoprotein
A‐I amyloid behavior,” Proteins: Structure, Function, and Bioinformatics,
vol. 90, no. 1. Wiley, pp. 258–269, 2022.'
ista: 'Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA.
2022. Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid
behavior. Proteins: Structure, Function, and Bioinformatics. 90(1), 258–269.'
mla: 'Gisonno, Romina A., et al. “Evolutionary and Structural Constraints Influencing
Apolipoprotein A‐I Amyloid Behavior.” Proteins: Structure, Function, and Bioinformatics,
vol. 90, no. 1, Wiley, 2022, pp. 258–69, doi:10.1002/prot.26217.'
short: 'R.A. Gisonno, T. Masson, N.A. Ramella, E.E. Barrera, V. Romanowski, M.A.
Tricerri, Proteins: Structure, Function, and Bioinformatics 90 (2022) 258–269.'
corr_author: '1'
date_created: 2024-04-03T07:49:53Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-10-09T21:08:44Z
day: '01'
department:
- _id: MaJö
doi: 10.1002/prot.26217
external_id:
pmid:
- '34414600'
intvolume: ' 90'
issue: '1'
keyword:
- Molecular Biology
- Biochemistry
- Structural Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/2020.09.18.304337
month: '01'
oa: 1
oa_version: Preprint
page: 258-269
pmid: 1
publication: 'Proteins: Structure, Function, and Bioinformatics'
publication_identifier:
eissn:
- 1097-0134
issn:
- 0887-3585
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid
behavior
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 90
year: '2022'
...
---
_id: '10566'
abstract:
- lang: eng
text: A versatile, scalable, room temperature and surfactant-free route for the
synthesis of metal chalcogenide nanoparticles in aqueous solution is detailed
here for the production of PbS and Cu-doped PbS nanoparticles. Subsequently, nanoparticles
are annealed in a reducing atmosphere to remove surface oxide, and consolidated
into dense polycrystalline materials by means of spark plasma sintering. By characterizing
the transport properties of the sintered material, we observe the annealing step
and the incorporation of Cu to play a key role in promoting the thermoelectric
performance of PbS. The presence of Cu allows improving the electrical conductivity
by increasing the charge carrier concentration and simultaneously maintaining
a large charge carrier mobility, which overall translates into record power factors
at ambient temperature, 2.3 mWm-1K−2. Simultaneously, the lattice thermal conductivity
decreases with the introduction of Cu, leading to a record high ZT = 0.37 at room
temperature and ZT = 1.22 at 773 K. Besides, a record average ZTave = 0.76 is
demonstrated in the temperature range 320–773 K for n-type Pb0.955Cu0.045S.
acknowledgement: This work was supported by the European Regional Development Funds.
MYL, YZ, DWY and KX thank the China Scholarship Council for scholarship support.
YL acknowledges funding from the European Union's Horizon 2020 research and innovation
program under the Marie Sklodowska-Curie grant agreement No. 754411 and the funding
for scientific research startup of Hefei University of Technology (No. 13020-03712021049).
MI acknowledges funding from IST Austria and the Werner Siemens Foundation. CC acknowledges
funding from the FWF “Lise Meitner Fellowship” grant agreement M 2889-N. TZ has
received funding from the CSC-UAB PhD scholarship program. ICN2 acknowledges funding
from Generalitat de Catalunya 2017 SGR 327. ICN2 thanks support from the project
NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/. ICN2
is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706)
and is funded by the CERCA Programme / Generalitat de Catalunya. Part of the present
work has been performed in the framework of Universitat Autònoma de Barcelona Materials
Science PhD program.
article_number: '133837'
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
full_name: Li, Mengyao
last_name: Li
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Yu
full_name: Zhang, Yu
last_name: Zhang
- first_name: Cheng
full_name: Chang, Cheng
id: 9E331C2E-9F27-11E9-AE48-5033E6697425
last_name: Chang
orcid: 0000-0002-9515-4277
- first_name: Ting
full_name: Zhang, Ting
last_name: Zhang
- first_name: Dawei
full_name: Yang, Dawei
last_name: Yang
- first_name: Ke
full_name: Xiao, Ke
last_name: Xiao
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Li M, Liu Y, Zhang Y, et al. Room temperature aqueous-based synthesis of copper-doped
lead sulfide nanoparticles for thermoelectric application. Chemical Engineering
Journal. 2022;433. doi:10.1016/j.cej.2021.133837
apa: Li, M., Liu, Y., Zhang, Y., Chang, C., Zhang, T., Yang, D., … Cabot, A. (2022).
Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles
for thermoelectric application. Chemical Engineering Journal. Elsevier.
https://doi.org/10.1016/j.cej.2021.133837
chicago: Li, Mengyao, Yu Liu, Yu Zhang, Cheng Chang, Ting Zhang, Dawei Yang, Ke
Xiao, Jordi Arbiol, Maria Ibáñez, and Andreu Cabot. “Room Temperature Aqueous-Based
Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.”
Chemical Engineering Journal. Elsevier, 2022. https://doi.org/10.1016/j.cej.2021.133837.
ieee: M. Li et al., “Room temperature aqueous-based synthesis of copper-doped
lead sulfide nanoparticles for thermoelectric application,” Chemical Engineering
Journal, vol. 433. Elsevier, 2022.
ista: Li M, Liu Y, Zhang Y, Chang C, Zhang T, Yang D, Xiao K, Arbiol J, Ibáñez M,
Cabot A. 2022. Room temperature aqueous-based synthesis of copper-doped lead sulfide
nanoparticles for thermoelectric application. Chemical Engineering Journal. 433,
133837.
mla: Li, Mengyao, et al. “Room Temperature Aqueous-Based Synthesis of Copper-Doped
Lead Sulfide Nanoparticles for Thermoelectric Application.” Chemical Engineering
Journal, vol. 433, 133837, Elsevier, 2022, doi:10.1016/j.cej.2021.133837.
short: M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol,
M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).
corr_author: '1'
date_created: 2021-12-19T23:01:33Z
date_published: 2022-04-01T00:00:00Z
date_updated: 2025-04-14T07:43:48Z
day: '01'
department:
- _id: MaIb
doi: 10.1016/j.cej.2021.133837
ec_funded: 1
external_id:
isi:
- '000773425200006'
intvolume: ' 433'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://ddd.uab.cat/pub/artpub/2022/270830/10.1016j.cej.2021.133837.pdf
month: '04'
oa: 1
oa_version: Submitted Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 9B8804FC-BA93-11EA-9121-9846C619BF3A
grant_number: M02889
name: Bottom-up Engineering for Thermoelectric Applications
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
Semiconductors for Waste Heat Recovery'
publication: Chemical Engineering Journal
publication_identifier:
issn:
- 1385-8947
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles
for thermoelectric application
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 433
year: '2022'
...
---
_id: '10583'
abstract:
- lang: eng
text: The synthetic strigolactone (SL) analog, rac-GR24, has been instrumental in
studying the role of SLs as well as karrikins because it activates the receptors
DWARF14 (D14) and KARRIKIN INSENSITIVE 2 (KAI2) of their signaling pathways, respectively.
Treatment with rac-GR24 modifies the root architecture at different levels, such
as decreasing the lateral root density (LRD), while promoting root hair elongation
or flavonol accumulation. Previously, we have shown that the flavonol biosynthesis
is transcriptionally activated in the root by rac-GR24 treatment, but, thus far,
the molecular players involved in that response have remained unknown. To get
an in-depth insight into the changes that occur after the compound is perceived
by the roots, we compared the root transcriptomes of the wild type and the more
axillary growth2 (max2) mutant, affected in both SL and karrikin signaling pathways,
with and without rac-GR24 treatment. Quantitative reverse transcription (qRT)-PCR,
reporter line analysis and mutant phenotyping indicated that the flavonol response
and the root hair elongation are controlled by the ELONGATED HYPOCOTYL 5 (HY5)
and MYB12 transcription factors, but HY5, in contrast to MYB12, affects the LRD
as well. Furthermore, we identified the transcription factors TARGET OF MONOPTEROS
5 (TMO5) and TMO5 LIKE1 as negative and the Mediator complex as positive regulators
of the rac-GR24 effect on LRD. Altogether, hereby, we get closer toward understanding
the molecular mechanisms that underlay the rac-GR24 responses in the root.
acknowledgement: The authors thank Ralf Stracke (Bielefeld University, Bielefeld,
Germany) for providing the myb mutants and their colleagues Bert De Rybel for the
tmo5t;mo5l1 double mutant, Boris Parizot for tips on the RNA-seq analysis, Veronique
Storme for statistical help on both the RNA-seq and lateral root density, and Martine
De Cock for help in preparing the manuscript.
article_processing_charge: No
article_type: original
author:
- first_name: Sylwia
full_name: Struk, Sylwia
last_name: Struk
- first_name: Lukas
full_name: Braem, Lukas
last_name: Braem
- first_name: Cedrick
full_name: Matthys, Cedrick
last_name: Matthys
- first_name: Alan
full_name: Walton, Alan
last_name: Walton
- first_name: Nick
full_name: Vangheluwe, Nick
last_name: Vangheluwe
- first_name: Stan
full_name: Van Praet, Stan
last_name: Van Praet
- first_name: Lingxiang
full_name: Jiang, Lingxiang
last_name: Jiang
- first_name: Pawel
full_name: Baster, Pawel
id: 3028BD74-F248-11E8-B48F-1D18A9856A87
last_name: Baster
- first_name: Carolien
full_name: De Cuyper, Carolien
last_name: De Cuyper
- first_name: Francois-Didier
full_name: Boyer, Francois-Didier
last_name: Boyer
- first_name: Elisabeth
full_name: Stes, Elisabeth
last_name: Stes
- first_name: Tom
full_name: Beeckman, Tom
last_name: Beeckman
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Kris
full_name: Gevaert, Kris
last_name: Gevaert
- first_name: Sofie
full_name: Goormachtig, Sofie
last_name: Goormachtig
citation:
ama: Struk S, Braem L, Matthys C, et al. Transcriptional analysis in the Arabidopsis
roots reveals new regulators that link rac-GR24 treatment with changes in flavonol
accumulation, root hair elongation and lateral root density. Plant & Cell
Physiology. 2022;63(1):104-119. doi:10.1093/pcp/pcab149
apa: Struk, S., Braem, L., Matthys, C., Walton, A., Vangheluwe, N., Van Praet, S.,
… Goormachtig, S. (2022). Transcriptional analysis in the Arabidopsis roots reveals
new regulators that link rac-GR24 treatment with changes in flavonol accumulation,
root hair elongation and lateral root density. Plant & Cell Physiology.
Oxford University Press. https://doi.org/10.1093/pcp/pcab149
chicago: Struk, Sylwia, Lukas Braem, Cedrick Matthys, Alan Walton, Nick Vangheluwe,
Stan Van Praet, Lingxiang Jiang, et al. “Transcriptional Analysis in the Arabidopsis
Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol
Accumulation, Root Hair Elongation and Lateral Root Density.” Plant & Cell
Physiology. Oxford University Press, 2022. https://doi.org/10.1093/pcp/pcab149.
ieee: S. Struk et al., “Transcriptional analysis in the Arabidopsis roots
reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation,
root hair elongation and lateral root density,” Plant & Cell Physiology,
vol. 63, no. 1. Oxford University Press, pp. 104–119, 2022.
ista: Struk S, Braem L, Matthys C, Walton A, Vangheluwe N, Van Praet S, Jiang L,
Baster P, De Cuyper C, Boyer F-D, Stes E, Beeckman T, Friml J, Gevaert K, Goormachtig
S. 2022. Transcriptional analysis in the Arabidopsis roots reveals new regulators
that link rac-GR24 treatment with changes in flavonol accumulation, root hair
elongation and lateral root density. Plant & Cell Physiology. 63(1), 104–119.
mla: Struk, Sylwia, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals
New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation,
Root Hair Elongation and Lateral Root Density.” Plant & Cell Physiology,
vol. 63, no. 1, Oxford University Press, 2022, pp. 104–19, doi:10.1093/pcp/pcab149.
short: S. Struk, L. Braem, C. Matthys, A. Walton, N. Vangheluwe, S. Van Praet, L.
Jiang, P. Baster, C. De Cuyper, F.-D. Boyer, E. Stes, T. Beeckman, J. Friml, K.
Gevaert, S. Goormachtig, Plant & Cell Physiology 63 (2022) 104–119.
date_created: 2021-12-28T11:44:18Z
date_published: 2022-01-21T00:00:00Z
date_updated: 2023-08-02T13:40:43Z
day: '21'
department:
- _id: JiFr
doi: 10.1093/pcp/pcab149
external_id:
isi:
- '000877899400009'
pmid:
- '34791413'
intvolume: ' 63'
isi: 1
issue: '1'
keyword:
- flavonols
- MAX2
- rac-Gr24
- RNA-seq
- root development
- transcriptional regulation
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/pcp/pcab149
month: '01'
oa: 1
oa_version: Published Version
page: 104-119
pmid: 1
publication: Plant & Cell Physiology
publication_identifier:
eissn:
- 1471-9053
issn:
- 0032-0781
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transcriptional analysis in the Arabidopsis roots reveals new regulators that
link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation
and lateral root density
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 63
year: '2022'
...
---
_id: '10584'
abstract:
- lang: eng
text: Electrically tunable lenses (ETLs) are those with the ability to alter their
optical power in response to an electric signal. This feature allows such systems
to not only image the areas of interest but also obtain spatial depth perception
(depth of field, DOF). The aim of the present study was to develop an ETL-based
imaging system for quantitative surface analysis. Firstly, the system was calibrated
to achieve high depth resolution, warranting the accurate measurement of the depth
and to account for and correct any influences from external factors on the ETL.
This was completed using the Tenengrad operator which effectively identified the
plane of best focus as demonstrated by the linear relationship between the control
current applied to the ETL and the height at which the optical system focuses.
The system was then employed to measure amplitude, spatial, hybrid, and volume
surface texture parameters of a model material (pharmaceutical dosage form) which
were validated against the parameters obtained using a previously validated surface
texture analysis technique, optical profilometry. There were no statistically
significant differences between the surface texture parameters measured by the
techniques, highlighting the potential application of ETL-based imaging systems
as an easily adaptable and low-cost alternative surface texture analysis technique
to conventional microscopy techniques
acknowledgement: The authors acknowledge the financial assistance provided by the
University of Huddersfield.
article_number: '17'
article_processing_charge: Yes
article_type: original
author:
- first_name: Jorabar Singh
full_name: Nirwan, Jorabar Singh
last_name: Nirwan
- first_name: Shan
full_name: Lou, Shan
last_name: Lou
- first_name: Saqib
full_name: Hussain, Saqib
last_name: Hussain
- first_name: Muhammad
full_name: Nauman, Muhammad
id: 32c21954-2022-11eb-9d5f-af9f93c24e71
last_name: Nauman
orcid: 0000-0002-2111-4846
- first_name: Tariq
full_name: Hussain, Tariq
last_name: Hussain
- first_name: Barbara R.
full_name: Conway, Barbara R.
last_name: Conway
- first_name: Muhammad Usman
full_name: Ghori, Muhammad Usman
last_name: Ghori
citation:
ama: Nirwan JS, Lou S, Hussain S, et al. Electrically tunable lens (ETL) - based
variable focus imaging system for parametric surface texture analysis of materials.
Micromachines. 2022;13(1). doi:10.3390/mi13010017
apa: Nirwan, J. S., Lou, S., Hussain, S., Nauman, M., Hussain, T., Conway, B. R.,
& Ghori, M. U. (2022). Electrically tunable lens (ETL) - based variable focus
imaging system for parametric surface texture analysis of materials. Micromachines.
MDPI. https://doi.org/10.3390/mi13010017
chicago: Nirwan, Jorabar Singh, Shan Lou, Saqib Hussain, Muhammad Nauman, Tariq
Hussain, Barbara R. Conway, and Muhammad Usman Ghori. “Electrically Tunable Lens
(ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis
of Materials.” Micromachines. MDPI, 2022. https://doi.org/10.3390/mi13010017.
ieee: J. S. Nirwan et al., “Electrically tunable lens (ETL) - based variable
focus imaging system for parametric surface texture analysis of materials,” Micromachines,
vol. 13, no. 1. MDPI, 2022.
ista: Nirwan JS, Lou S, Hussain S, Nauman M, Hussain T, Conway BR, Ghori MU. 2022.
Electrically tunable lens (ETL) - based variable focus imaging system for parametric
surface texture analysis of materials. Micromachines. 13(1), 17.
mla: Nirwan, Jorabar Singh, et al. “Electrically Tunable Lens (ETL) - Based Variable
Focus Imaging System for Parametric Surface Texture Analysis of Materials.” Micromachines,
vol. 13, no. 1, 17, MDPI, 2022, doi:10.3390/mi13010017.
short: J.S. Nirwan, S. Lou, S. Hussain, M. Nauman, T. Hussain, B.R. Conway, M.U.
Ghori, Micromachines 13 (2022).
date_created: 2022-01-02T23:01:33Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2023-08-09T10:16:10Z
day: '01'
ddc:
- '620'
department:
- _id: KiMo
doi: 10.3390/mi13010017
external_id:
isi:
- '000758547200001'
file:
- access_level: open_access
checksum: 5d062cae3f1acb251cacb21021724c4e
content_type: application/pdf
creator: alisjak
date_created: 2022-01-03T13:43:01Z
date_updated: 2022-01-03T13:43:01Z
file_id: '10601'
file_name: 2021_Micromachines_Singh.pdf
file_size: 5370675
relation: main_file
success: 1
file_date_updated: 2022-01-03T13:43:01Z
has_accepted_license: '1'
intvolume: ' 13'
isi: 1
issue: '1'
keyword:
- surface texture
- electrically tunable lens
- materials
- hypromellose
- surface topography
- surface roughness
- pharmaceutical tablet
- variable focus imaging
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Micromachines
publication_identifier:
eissn:
- 2072-666X
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electrically tunable lens (ETL) - based variable focus imaging system for parametric
surface texture analysis of materials
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2022'
...
---
_id: '10587'
abstract:
- lang: eng
text: Access to a blossoming library of colloidal nanomaterials provides building
blocks for complex assembled materials. The journey to bring these prospects to
fruition stands to benefit from the application of advanced processing methods.
Epitaxially connected nanocrystal (or quantum dot) superlattices present a captivating
model system for mesocrystals with intriguing emergent properties. The conventional
processing approach to creating these materials involves assembling and attaching
the constituent nanocrystals at the interface between two immiscible fluids. Processing
small liquid volumes of the colloidal nanocrystal solution involves several complexities
arising from the concurrent spreading, evaporation, assembly, and attachment.
The ability of inkjet printers to deliver small (typically picoliter) liquid volumes
with precise positioning is attractive to advance fundamental insights into the
processing science, and thereby potentially enable new routes to incorporate the
epitaxially connected superlattices into technology platforms. In this study,
we identified the processing window of opportunity, including nanocrystal ink
formulation and printing approach to enable delivery of colloidal nanocrystals
from an inkjet nozzle onto the surface of a sessile droplet of the immiscible
subphase. We demonstrate how inkjet printing can be scaled-down to enable the
fabrication of epitaxially connected superlattices on patterned sub-millimeter
droplets. We anticipate that insights from this work will spur on future advances
to enable more mechanistic insights into the assembly processes and new avenues
to create high-fidelity superlattices.
acknowledgement: This project was supported by the US Department of Energy through
award (No. DE-SC0018026). The work was performed in part at the Cornell NanoScale
Facility, a member of the National Nanotechnology Coordinated Infrastructure (NNCI),
which is supported by the National Science Foundation (No. NNCI-1542081) and in
part at the Cornell Center for Materials Research with funding from the NSF MRSEC
program (No. DMR-1719875). The authors thank Beth Rhodes for the technical assistance
with inkjet printing, and E. Peretz and Q. Wen for the early exploratory experiments.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
full_name: Balazs, Daniel
id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E
last_name: Balazs
orcid: 0000-0001-7597-043X
- first_name: N. Deniz
full_name: Erkan, N. Deniz
last_name: Erkan
- first_name: Michelle
full_name: Quien, Michelle
last_name: Quien
- first_name: Tobias
full_name: Hanrath, Tobias
last_name: Hanrath
citation:
ama: Balazs D, Erkan ND, Quien M, Hanrath T. Inkjet printing of epitaxially connected
nanocrystal superlattices. Nano Research. 2022;15(5):4536–4543. doi:10.1007/s12274-021-4022-7
apa: Balazs, D., Erkan, N. D., Quien, M., & Hanrath, T. (2022). Inkjet printing
of epitaxially connected nanocrystal superlattices. Nano Research. Springer
Nature. https://doi.org/10.1007/s12274-021-4022-7
chicago: Balazs, Daniel, N. Deniz Erkan, Michelle Quien, and Tobias Hanrath. “Inkjet
Printing of Epitaxially Connected Nanocrystal Superlattices.” Nano Research.
Springer Nature, 2022. https://doi.org/10.1007/s12274-021-4022-7.
ieee: D. Balazs, N. D. Erkan, M. Quien, and T. Hanrath, “Inkjet printing of epitaxially
connected nanocrystal superlattices,” Nano Research, vol. 15, no. 5. Springer
Nature, pp. 4536–4543, 2022.
ista: Balazs D, Erkan ND, Quien M, Hanrath T. 2022. Inkjet printing of epitaxially
connected nanocrystal superlattices. Nano Research. 15(5), 4536–4543.
mla: Balazs, Daniel, et al. “Inkjet Printing of Epitaxially Connected Nanocrystal
Superlattices.” Nano Research, vol. 15, no. 5, Springer Nature, 2022, pp.
4536–4543, doi:10.1007/s12274-021-4022-7.
short: D. Balazs, N.D. Erkan, M. Quien, T. Hanrath, Nano Research 15 (2022) 4536–4543.
date_created: 2022-01-02T23:01:34Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2023-08-02T13:47:21Z
day: '01'
department:
- _id: MaIb
doi: 10.1007/s12274-021-4022-7
external_id:
isi:
- '000735340300001'
intvolume: ' 15'
isi: 1
issue: '5'
keyword:
- interfacial assembly
- colloidal nanocrystal
- superlattice
- inkjet printing
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.osti.gov/biblio/1837946
month: '05'
oa: 1
oa_version: Submitted Version
page: 4536–4543
publication: Nano Research
publication_identifier:
eissn:
- 1998-0000
issn:
- 1998-0124
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inkjet printing of epitaxially connected nanocrystal superlattices
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 15
year: '2022'
...
---
_id: '10588'
abstract:
- lang: eng
text: We prove the Sobolev-to-Lipschitz property for metric measure spaces satisfying
the quasi curvature-dimension condition recently introduced in Milman (Commun
Pure Appl Math, to appear). We provide several applications to properties of the
corresponding heat semigroup. In particular, under the additional assumption of
infinitesimal Hilbertianity, we show the Varadhan short-time asymptotics for the
heat semigroup with respect to the distance, and prove the irreducibility of the
heat semigroup. These results apply in particular to large classes of (ideal)
sub-Riemannian manifolds.
acknowledgement: "The authors are grateful to Dr. Bang-Xian Han for helpful discussions
on the Sobolev-to-Lipschitz property on metric measure spaces, and to Professor
Kazuhiro Kuwae, Professor Emanuel Milman, Dr. Giorgio Stefani, and Dr. Gioacchino
Antonelli for reading a preliminary version of this work and for their valuable
comments and suggestions. Finally, they wish to express their gratitude to two anonymous
Reviewers whose suggestions improved the presentation of this work.\r\n\r\nL.D.S.
gratefully acknowledges funding of his position by the Austrian Science Fund (FWF)
grant F65, and by the European Research Council (ERC, grant No. 716117, awarded
to Prof. Dr. Jan Maas).\r\n\r\nK.S. gratefully acknowledges funding by: the JSPS
Overseas Research Fellowships, Grant Nr. 290142; World Premier International Research
Center Initiative (WPI), MEXT, Japan; JSPS Grant-in-Aid for Scientific Research
on Innovative Areas “Discrete Geometric Analysis for Materials Design”, Grant Number
17H06465; and the Alexander von Humboldt Stiftung, Humboldt-Forschungsstipendium."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
full_name: Dello Schiavo, Lorenzo
id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
last_name: Dello Schiavo
orcid: 0000-0002-9881-6870
- first_name: Kohei
full_name: Suzuki, Kohei
last_name: Suzuki
citation:
ama: Dello Schiavo L, Suzuki K. Sobolev-to-Lipschitz property on QCD- spaces and
applications. Mathematische Annalen. 2022;384:1815-1832. doi:10.1007/s00208-021-02331-2
apa: Dello Schiavo, L., & Suzuki, K. (2022). Sobolev-to-Lipschitz property on
QCD- spaces and applications. Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-021-02331-2
chicago: Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property
on QCD- Spaces and Applications.” Mathematische Annalen. Springer Nature,
2022. https://doi.org/10.1007/s00208-021-02331-2.
ieee: L. Dello Schiavo and K. Suzuki, “Sobolev-to-Lipschitz property on QCD- spaces
and applications,” Mathematische Annalen, vol. 384. Springer Nature, pp.
1815–1832, 2022.
ista: Dello Schiavo L, Suzuki K. 2022. Sobolev-to-Lipschitz property on QCD- spaces
and applications. Mathematische Annalen. 384, 1815–1832.
mla: Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on
QCD- Spaces and Applications.” Mathematische Annalen, vol. 384, Springer
Nature, 2022, pp. 1815–32, doi:10.1007/s00208-021-02331-2.
short: L. Dello Schiavo, K. Suzuki, Mathematische Annalen 384 (2022) 1815–1832.
corr_author: '1'
date_created: 2022-01-02T23:01:35Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2025-04-14T07:27:46Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00208-021-02331-2
ec_funded: 1
external_id:
arxiv:
- '2110.05137'
isi:
- '000734150200001'
file:
- access_level: open_access
checksum: 2593abbf195e38efa93b6006b1e90eb1
content_type: application/pdf
creator: alisjak
date_created: 2022-01-03T11:08:31Z
date_updated: 2022-01-03T11:08:31Z
file_id: '10596'
file_name: 2021_MathAnn_DelloSchiavo.pdf
file_size: 410090
relation: main_file
success: 1
file_date_updated: 2022-01-03T11:08:31Z
has_accepted_license: '1'
intvolume: ' 384'
isi: 1
keyword:
- quasi curvature-dimension condition
- sub-riemannian geometry
- Sobolev-to-Lipschitz property
- Varadhan short-time asymptotics
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1815-1832
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Mathematische Annalen
publication_identifier:
eissn:
- 1432-1807
issn:
- 0025-5831
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sobolev-to-Lipschitz property on QCD- spaces and applications
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 384
year: '2022'
...
---
_id: '10589'
abstract:
- lang: eng
text: Superconducting devices ubiquitously have an excess of broken Cooper pairs,
which can hamper their performance. It is widely believed that external radiation
is responsible but a study now suggests there must be an additional, unknown source.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Andrew P
full_name: Higginbotham, Andrew P
id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
last_name: Higginbotham
orcid: 0000-0003-2607-2363
citation:
ama: Higginbotham AP. A secret source. Nature Physics. 2022;18:126. doi:10.1038/s41567-021-01459-x
apa: Higginbotham, A. P. (2022). A secret source. Nature Physics. Springer
Nature. https://doi.org/10.1038/s41567-021-01459-x
chicago: Higginbotham, Andrew P. “A Secret Source.” Nature Physics. Springer
Nature, 2022. https://doi.org/10.1038/s41567-021-01459-x.
ieee: A. P. Higginbotham, “A secret source,” Nature Physics, vol. 18. Springer
Nature, p. 126, 2022.
ista: Higginbotham AP. 2022. A secret source. Nature Physics. 18, 126.
mla: Higginbotham, Andrew P. “A Secret Source.” Nature Physics, vol. 18,
Springer Nature, 2022, p. 126, doi:10.1038/s41567-021-01459-x.
short: A.P. Higginbotham, Nature Physics 18 (2022) 126.
corr_author: '1'
date_created: 2022-01-02T23:01:35Z
date_published: 2022-02-01T00:00:00Z
date_updated: 2024-10-09T21:01:21Z
day: '01'
department:
- _id: AnHi
doi: 10.1038/s41567-021-01459-x
external_id:
isi:
- '000733431000007'
intvolume: ' 18'
isi: 1
keyword:
- superconducting devices
- superconducting properties and materials
language:
- iso: eng
month: '02'
oa_version: None
page: '126'
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A secret source
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 18
year: '2022'
...
---
_id: '10600'
abstract:
- lang: eng
text: We show that recent results on adiabatic theory for interacting gapped many-body
systems on finite lattices remain valid in the thermodynamic limit. More precisely,
we prove a generalized super-adiabatic theorem for the automorphism group describing
the infinite volume dynamics on the quasi-local algebra of observables. The key
assumption is the existence of a sequence of gapped finite volume Hamiltonians,
which generates the same infinite volume dynamics in the thermodynamic limit.
Our adiabatic theorem also holds for certain perturbations of gapped ground states
that close the spectral gap (so it is also an adiabatic theorem for resonances
and, in this sense, “generalized”), and it provides an adiabatic approximation
to all orders in the adiabatic parameter (a property often called “super-adiabatic”).
In addition to the existing results for finite lattices, we also perform a resummation
of the adiabatic expansion and allow for observables that are not strictly local.
Finally, as an application, we prove the validity of linear and higher order response
theory for our class of perturbations for infinite systems. While we consider
the result and its proof as new and interesting in itself, we also lay the foundation
for the proof of an adiabatic theorem for systems with a gap only in the bulk,
which will be presented in a follow-up article.
acknowledgement: J.H. acknowledges partial financial support from ERC Advanced Grant
“RMTBeyond” No. 101020331.
article_number: '011901'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Sven Joscha
full_name: Henheik, Sven Joscha
id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
last_name: Henheik
orcid: 0000-0003-1106-327X
- first_name: Stefan
full_name: Teufel, Stefan
last_name: Teufel
citation:
ama: 'Henheik SJ, Teufel S. Adiabatic theorem in the thermodynamic limit: Systems
with a uniform gap. Journal of Mathematical Physics. 2022;63(1). doi:10.1063/5.0051632'
apa: 'Henheik, S. J., & Teufel, S. (2022). Adiabatic theorem in the thermodynamic
limit: Systems with a uniform gap. Journal of Mathematical Physics. AIP
Publishing. https://doi.org/10.1063/5.0051632'
chicago: 'Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic
Limit: Systems with a Uniform Gap.” Journal of Mathematical Physics. AIP
Publishing, 2022. https://doi.org/10.1063/5.0051632.'
ieee: 'S. J. Henheik and S. Teufel, “Adiabatic theorem in the thermodynamic limit:
Systems with a uniform gap,” Journal of Mathematical Physics, vol. 63,
no. 1. AIP Publishing, 2022.'
ista: 'Henheik SJ, Teufel S. 2022. Adiabatic theorem in the thermodynamic limit:
Systems with a uniform gap. Journal of Mathematical Physics. 63(1), 011901.'
mla: 'Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic
Limit: Systems with a Uniform Gap.” Journal of Mathematical Physics, vol.
63, no. 1, 011901, AIP Publishing, 2022, doi:10.1063/5.0051632.'
short: S.J. Henheik, S. Teufel, Journal of Mathematical Physics 63 (2022).
date_created: 2022-01-03T12:19:48Z
date_published: 2022-01-03T00:00:00Z
date_updated: 2025-04-14T07:57:17Z
day: '03'
department:
- _id: GradSch
- _id: LaEr
doi: 10.1063/5.0051632
ec_funded: 1
external_id:
arxiv:
- '2012.15238'
isi:
- '000739446000009'
intvolume: ' 63'
isi: 1
issue: '1'
keyword:
- mathematical physics
- statistical and nonlinear physics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2012.15238
month: '01'
oa: 1
oa_version: Preprint
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
publication: Journal of Mathematical Physics
publication_identifier:
eissn:
- 1089-7658
issn:
- 0022-2488
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 63
year: '2022'
...
---
_id: '10602'
abstract:
- lang: eng
text: Transforming ω-automata into parity automata is traditionally done using appearance
records. We present an efficient variant of this idea, tailored to Rabin automata,
and several optimizations applicable to all appearance records. We compare the
methods experimentally and show that our method produces significantly smaller
automata than previous approaches.
acknowledgement: This work is partially funded by the German Research Foundation (DFG)
projects Verified Model Checkers (No. 317422601) and Statistical Unbounded Verification
(No. 383882557), and the Alexander von Humboldt Foundation with funds from the German
Federal Ministry of Education and Research. It is an extended version of [21], including
all proofs together with further explanations and examples. Moreover, we provide
a new, more efficient construction based on (total) preorders, unifying previous
optimizations. Experiments are performed with a new, performant implementation,
comparing our approach to the current state of the art.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Jan
full_name: Kretinsky, Jan
id: 44CEF464-F248-11E8-B48F-1D18A9856A87
last_name: Kretinsky
orcid: 0000-0002-8122-2881
- first_name: Tobias
full_name: Meggendorfer, Tobias
id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
last_name: Meggendorfer
orcid: 0000-0002-1712-2165
- first_name: Clara
full_name: Waldmann, Clara
last_name: Waldmann
- first_name: Maximilian
full_name: Weininger, Maximilian
last_name: Weininger
citation:
ama: Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. Index appearance record
with preorders. Acta Informatica. 2022;59:585-618. doi:10.1007/s00236-021-00412-y
apa: Kretinsky, J., Meggendorfer, T., Waldmann, C., & Weininger, M. (2022).
Index appearance record with preorders. Acta Informatica. Springer Nature.
https://doi.org/10.1007/s00236-021-00412-y
chicago: Kretinsky, Jan, Tobias Meggendorfer, Clara Waldmann, and Maximilian Weininger.
“Index Appearance Record with Preorders.” Acta Informatica. Springer Nature,
2022. https://doi.org/10.1007/s00236-021-00412-y.
ieee: J. Kretinsky, T. Meggendorfer, C. Waldmann, and M. Weininger, “Index appearance
record with preorders,” Acta Informatica, vol. 59. Springer Nature, pp.
585–618, 2022.
ista: Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. 2022. Index appearance
record with preorders. Acta Informatica. 59, 585–618.
mla: Kretinsky, Jan, et al. “Index Appearance Record with Preorders.” Acta Informatica,
vol. 59, Springer Nature, 2022, pp. 585–618, doi:10.1007/s00236-021-00412-y.
short: J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, Acta Informatica
59 (2022) 585–618.
corr_author: '1'
date_created: 2022-01-06T12:37:27Z
date_published: 2022-10-01T00:00:00Z
date_updated: 2025-04-15T06:53:08Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/s00236-021-00412-y
external_id:
isi:
- '000735765500001'
file:
- access_level: open_access
checksum: bf1c195b6aaf59e8530cf9e3a9d731f7
content_type: application/pdf
creator: cchlebak
date_created: 2022-01-07T07:50:31Z
date_updated: 2022-01-07T07:50:31Z
file_id: '10603'
file_name: 2021_ActaInfor_Křetínský.pdf
file_size: 1066082
relation: main_file
success: 1
file_date_updated: 2022-01-07T07:50:31Z
has_accepted_license: '1'
intvolume: ' 59'
isi: 1
keyword:
- computer networks and communications
- information systems
- software
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 585-618
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Acta Informatica
publication_identifier:
eissn:
- 1432-0525
issn:
- 0001-5903
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Index appearance record with preorders
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 59
year: '2022'
...