---
_id: '11400'
abstract:
- lang: eng
text: By varying the concentration of molecules in the cytoplasm or on the membrane,
cells can induce the formation of condensates and liquid droplets, similar to
phase separation. Their thermodynamics, much studied, depends on the mutual interactions
between microscopic constituents. Here, we focus on the kinetics and size control
of 2D clusters, forming on membranes. Using molecular dynamics of patchy colloids,
we model a system of two species of proteins, giving origin to specific heterotypic
bonds. We find that concentrations, together with valence and bond strength, control
both the size and the growth time rate of the clusters. In particular, if one
species is in large excess, it gradually saturates the binding sites of the other
species; the system then becomes kinetically arrested and cluster coarsening slows
down or stops, thus yielding effective size selection. This phenomenology is observed
both in solid and fluid clusters, which feature additional generic homotypic interactions
and are reminiscent of the ones observed on biological membranes.
acknowledgement: "The authors thank Longhui Zeng and Xiaolei Su (Yale University)
for bringing the topic to their attention and for useful comments. This work has
received funding from the European Research Council under the European Union’s Horizon\r\n2020
research and innovation program (ERC Grant No. 802960 and Marie Skłodowska-Curie
Grant No. 101034413). The authors are grateful to the UK Materials and Molecular
Modeling Hub for computational resources, which is partially funded by EPSRC (Grant
Nos. EP/P020194/1 and EP/T022213/1). The authors acknowledge support from ISTA and
from the Royal Society (Grant No. UF160266)."
article_number: '194902'
article_processing_charge: No
article_type: original
author:
- first_name: Ivan
full_name: Palaia, Ivan
id: 9c805cd2-4b75-11ec-a374-db6dd0ed57fa
last_name: Palaia
orcid: ' 0000-0002-8843-9485 '
- first_name: Anđela
full_name: Šarić, Anđela
id: bf63d406-f056-11eb-b41d-f263a6566d8b
last_name: Šarić
orcid: 0000-0002-7854-2139
citation:
ama: Palaia I, Šarić A. Controlling cluster size in 2D phase-separating binary mixtures
with specific interactions. The Journal of Chemical Physics. 2022;156(19).
doi:10.1063/5.0087769
apa: Palaia, I., & Šarić, A. (2022). Controlling cluster size in 2D phase-separating
binary mixtures with specific interactions. The Journal of Chemical Physics.
AIP Publishing. https://doi.org/10.1063/5.0087769
chicago: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
Binary Mixtures with Specific Interactions.” The Journal of Chemical Physics.
AIP Publishing, 2022. https://doi.org/10.1063/5.0087769.
ieee: I. Palaia and A. Šarić, “Controlling cluster size in 2D phase-separating binary
mixtures with specific interactions,” The Journal of Chemical Physics,
vol. 156, no. 19. AIP Publishing, 2022.
ista: Palaia I, Šarić A. 2022. Controlling cluster size in 2D phase-separating binary
mixtures with specific interactions. The Journal of Chemical Physics. 156(19),
194902.
mla: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
Binary Mixtures with Specific Interactions.” The Journal of Chemical Physics,
vol. 156, no. 19, 194902, AIP Publishing, 2022, doi:10.1063/5.0087769.
short: I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
corr_author: '1'
date_created: 2022-05-22T17:04:48Z
date_published: 2022-05-16T00:00:00Z
date_updated: 2025-06-11T14:00:32Z
day: '16'
ddc:
- '540'
department:
- _id: AnSa
doi: 10.1063/5.0087769
ec_funded: 1
external_id:
isi:
- '000797236000004'
pmid:
- '35597653'
file:
- access_level: open_access
checksum: 7fada58059676a4bb0944b82247af740
content_type: application/pdf
creator: dernst
date_created: 2022-05-23T07:45:33Z
date_updated: 2022-05-23T07:45:33Z
file_id: '11405'
file_name: 2022_JourChemPhysics_Palaia.pdf
file_size: 6387208
relation: main_file
success: 1
file_date_updated: 2022-05-23T07:45:33Z
has_accepted_license: '1'
intvolume: ' 156'
isi: 1
issue: '19'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: eba2549b-77a9-11ec-83b8-a81e493eae4e
call_identifier: H2020
grant_number: '802960'
name: 'Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines'
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: The Journal of Chemical Physics
publication_identifier:
eissn:
- 1089-7690
issn:
- 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Controlling cluster size in 2D phase-separating binary mixtures with specific
interactions
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 156
year: '2022'
...
---
_id: '11401'
abstract:
- lang: eng
text: Tin selenide (SnSe) is considered a robust candidate for thermoelectric applications
due to its very high thermoelectric figure of merit, ZT, with values of 2.6 in
p-type and 2.8 in n-type single crystals. Sn has been replaced with various lower
group dopants to achieve successful p-type doping in SnSe with high ZT values.
A known, facile, and powerful alternative way to introduce a hole carrier is to
use a natural single Sn vacancy, VSn. Through transport and scanning tunneling
microscopy studies, we discovered that VSn are dominant in high-quality (slow
cooling rate) SnSe single crystals, while multiple vacancies, Vmulti, are dominant
in low-quality (high cooling rate) single crystals. Surprisingly, both VSn and
Vmulti help to increase the power factors of SnSe, whereas samples with dominant
VSn have superior thermoelectric properties in SnSe single crystals. Additionally,
the observation that Vmulti are good p-type sources observed in relatively low-quality
single crystals is useful in thermoelectric applications because polycrystalline
SnSe can be used due to its mechanical strength; this substance is usually fabricated
at very high cooling speeds.
acknowledgement: This work was supported by the National Research Foundation of Korea
[NRF-2019R1F1A1058473, NRF-2019R1A6A1A11053838, and NRF-2020K1A4A7A02095438].
article_number: '42'
article_processing_charge: No
article_type: original
author:
- first_name: Van Quang
full_name: Nguyen, Van Quang
last_name: Nguyen
- first_name: Thi Ly
full_name: Trinh, Thi Ly
last_name: Trinh
- first_name: Cheng
full_name: Chang, Cheng
id: 9E331C2E-9F27-11E9-AE48-5033E6697425
last_name: Chang
orcid: 0000-0002-9515-4277
- first_name: Li Dong
full_name: Zhao, Li Dong
last_name: Zhao
- first_name: Thi Huong
full_name: Nguyen, Thi Huong
last_name: Nguyen
- first_name: Van Thiet
full_name: Duong, Van Thiet
last_name: Duong
- first_name: Anh Tuan
full_name: Duong, Anh Tuan
last_name: Duong
- first_name: Jong Ho
full_name: Park, Jong Ho
last_name: Park
- first_name: Sudong
full_name: Park, Sudong
last_name: Park
- first_name: Jungdae
full_name: Kim, Jungdae
last_name: Kim
- first_name: Sunglae
full_name: Cho, Sunglae
last_name: Cho
citation:
ama: 'Nguyen VQ, Trinh TL, Chang C, et al. Unidentified major p-type source in SnSe:
Multivacancies. NPG Asia Materials. 2022;14. doi:10.1038/s41427-022-00393-5'
apa: 'Nguyen, V. Q., Trinh, T. L., Chang, C., Zhao, L. D., Nguyen, T. H., Duong,
V. T., … Cho, S. (2022). Unidentified major p-type source in SnSe: Multivacancies.
NPG Asia Materials. Springer Nature. https://doi.org/10.1038/s41427-022-00393-5'
chicago: 'Nguyen, Van Quang, Thi Ly Trinh, Cheng Chang, Li Dong Zhao, Thi Huong
Nguyen, Van Thiet Duong, Anh Tuan Duong, et al. “Unidentified Major P-Type Source
in SnSe: Multivacancies.” NPG Asia Materials. Springer Nature, 2022. https://doi.org/10.1038/s41427-022-00393-5.'
ieee: 'V. Q. Nguyen et al., “Unidentified major p-type source in SnSe: Multivacancies,”
NPG Asia Materials, vol. 14. Springer Nature, 2022.'
ista: 'Nguyen VQ, Trinh TL, Chang C, Zhao LD, Nguyen TH, Duong VT, Duong AT, Park
JH, Park S, Kim J, Cho S. 2022. Unidentified major p-type source in SnSe: Multivacancies.
NPG Asia Materials. 14, 42.'
mla: 'Nguyen, Van Quang, et al. “Unidentified Major P-Type Source in SnSe: Multivacancies.”
NPG Asia Materials, vol. 14, 42, Springer Nature, 2022, doi:10.1038/s41427-022-00393-5.'
short: V.Q. Nguyen, T.L. Trinh, C. Chang, L.D. Zhao, T.H. Nguyen, V.T. Duong, A.T.
Duong, J.H. Park, S. Park, J. Kim, S. Cho, NPG Asia Materials 14 (2022).
date_created: 2022-05-22T22:01:40Z
date_published: 2022-05-13T00:00:00Z
date_updated: 2023-08-03T07:13:58Z
day: '13'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1038/s41427-022-00393-5
external_id:
isi:
- '000794880200001'
file:
- access_level: open_access
checksum: 0579997cc1d28bf66e29357e08e3e39d
content_type: application/pdf
creator: dernst
date_created: 2022-05-23T06:47:57Z
date_updated: 2022-05-23T06:47:57Z
file_id: '11404'
file_name: 2022_NPGAsiaMaterials_Nguyen.pdf
file_size: 6202545
relation: main_file
success: 1
file_date_updated: 2022-05-23T06:47:57Z
has_accepted_license: '1'
intvolume: ' 14'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: NPG Asia Materials
publication_identifier:
eissn:
- 1884-4057
issn:
- 1884-4049
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Unidentified major p-type source in SnSe: Multivacancies'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2022'
...
---
_id: '11402'
abstract:
- lang: eng
text: Fixed-horizon planning considers a weighted graph and asks to construct a
path that maximizes the sum of weights for a given time horizon T. However, in
many scenarios, the time horizon is not fixed, but the stopping time is chosen
according to some distribution such that the expected stopping time is T. If the
stopping-time distribution is not known, then to ensure robustness, the distribution
is chosen by an adversary as the worst-case scenario. A stationary plan for every
vertex always chooses the same outgoing edge. For fixed horizon or fixed stopping-time
distribution, stationary plans are not sufficient for optimality. Quite surprisingly
we show that when an adversary chooses the stopping-time distribution with expected
stopping-time T, then stationary plans are sufficient. While computing optimal
stationary plans for fixed horizon is NP-complete, we show that computing optimal
stationary plans under adversarial stopping-time distribution can be achieved
in polynomial time.
acknowledgement: This work was partially supported by Austrian Science Fund (FWF)
NFN Grant No RiSE/SHiNE S11407 and by the grant ERC CoG 863818 (ForM-SMArt).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Laurent
full_name: Doyen, Laurent
last_name: Doyen
citation:
ama: Chatterjee K, Doyen L. Graph planning with expected finite horizon. Journal
of Computer and System Sciences. 2022;129:1-21. doi:10.1016/j.jcss.2022.04.003
apa: Chatterjee, K., & Doyen, L. (2022). Graph planning with expected finite
horizon. Journal of Computer and System Sciences. Elsevier. https://doi.org/10.1016/j.jcss.2022.04.003
chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Graph Planning with Expected
Finite Horizon.” Journal of Computer and System Sciences. Elsevier, 2022.
https://doi.org/10.1016/j.jcss.2022.04.003.
ieee: K. Chatterjee and L. Doyen, “Graph planning with expected finite horizon,”
Journal of Computer and System Sciences, vol. 129. Elsevier, pp. 1–21,
2022.
ista: Chatterjee K, Doyen L. 2022. Graph planning with expected finite horizon.
Journal of Computer and System Sciences. 129, 1–21.
mla: Chatterjee, Krishnendu, and Laurent Doyen. “Graph Planning with Expected Finite
Horizon.” Journal of Computer and System Sciences, vol. 129, Elsevier,
2022, pp. 1–21, doi:10.1016/j.jcss.2022.04.003.
short: K. Chatterjee, L. Doyen, Journal of Computer and System Sciences 129 (2022)
1–21.
date_created: 2022-05-22T22:01:40Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2025-07-10T11:54:34Z
day: '01'
department:
- _id: KrCh
doi: 10.1016/j.jcss.2022.04.003
ec_funded: 1
external_id:
arxiv:
- '1802.03642'
isi:
- '000805002800001'
intvolume: ' 129'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1802.03642'
month: '11'
oa: 1
oa_version: Preprint
page: 1-21
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Journal of Computer and System Sciences
publication_identifier:
eissn:
- 1090-2724
issn:
- 0022-0000
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
record:
- id: '7402'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Graph planning with expected finite horizon
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 129
year: '2022'
...
---
_id: '11403'
article_processing_charge: No
article_type: original
author:
- first_name: Andrea
full_name: Stöllner, Andrea
id: 4bdcf7f6-eb97-11eb-a6c2-9981bbdc3bed
last_name: Stöllner
orcid: 0000-0002-0464-8440
citation:
ama: Stöllner A. Measuring airborne nanoplastics using aerosol physics. Nature
Reviews Earth and Environment. 2022;3(6):360. doi:10.1038/s43017-022-00302-y
apa: Stöllner, A. (2022). Measuring airborne nanoplastics using aerosol physics.
Nature Reviews Earth and Environment. Springer Nature. https://doi.org/10.1038/s43017-022-00302-y
chicago: Stöllner, Andrea. “Measuring Airborne Nanoplastics Using Aerosol Physics.”
Nature Reviews Earth and Environment. Springer Nature, 2022. https://doi.org/10.1038/s43017-022-00302-y.
ieee: A. Stöllner, “Measuring airborne nanoplastics using aerosol physics,” Nature
Reviews Earth and Environment, vol. 3, no. 6. Springer Nature, p. 360, 2022.
ista: Stöllner A. 2022. Measuring airborne nanoplastics using aerosol physics. Nature
Reviews Earth and Environment. 3(6), 360.
mla: Stöllner, Andrea. “Measuring Airborne Nanoplastics Using Aerosol Physics.”
Nature Reviews Earth and Environment, vol. 3, no. 6, Springer Nature, 2022,
p. 360, doi:10.1038/s43017-022-00302-y.
short: A. Stöllner, Nature Reviews Earth and Environment 3 (2022) 360.
corr_author: '1'
date_created: 2022-05-22T22:01:41Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2024-10-09T21:02:28Z
day: '01'
department:
- _id: GradSch
doi: 10.1038/s43017-022-00302-y
external_id:
isi:
- '000791125600002'
intvolume: ' 3'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: '360'
publication: Nature Reviews Earth and Environment
publication_identifier:
eissn:
- 2662-138X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Measuring airborne nanoplastics using aerosol physics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2022'
...
---
_id: '11417'
abstract:
- lang: eng
text: "Over the past few years, the field of quantum information science has seen
tremendous progress toward realizing large-scale quantum computers. With demonstrations
of quantum computers outperforming classical computers for a select range of problems,1–3
we have finally entered the noisy, intermediate-scale quantum (NISQ) computing
era. While the quantum computers of today are technological marvels, they are
not yet error corrected, and it is unclear whether any system will scale beyond
a few hundred logical qubits without significant changes to architecture and control
schemes. Today's quantum systems are analogous to the ENIAC (Electronic Numerical
Integrator And Computer) and EDVAC (Electronic Discrete Variable Automatic Computer)
systems of the 1940s, which ran on vacuum tubes. These machines were built on
a solid, nominally scalable architecture and when they were developed, nobody
could have predicted the development of the transistor and the impact of the resulting
semiconductor industry. Simply put, the computers of today are nothing like the
early computers of the 1940s. We believe that the qubits of future fault-tolerant
quantum systems will look quite different from the qubits of the NISQ machines
in operation today. This Special Topic issue is devoted to new and emerging quantum
systems with a focus on enabling technologies that can eventually lead to the
quantum analog to the transistor. We have solicited both research4–18 and perspective
articles19–21 to discuss new and emerging qubit systems with a focus on novel
materials, encodings, and architectures. We are proud to present a collection
that touches on a wide range of technologies including superconductors,7–13,21
semiconductors,15–17,19 and individual atomic qubits.18\r\n"
acknowledgement: "We would like to thank all of the authors who contributed to\r\nthis
Special Topic. We would also like to thank the editorial team at\r\nAPL including
Jessica Trudeau, Emma Van Burns, Martin Weides,\r\nand Lesley Cohen."
article_number: '190401'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Anthony J.
full_name: Sigillito, Anthony J.
last_name: Sigillito
- first_name: Jacob P.
full_name: Covey, Jacob P.
last_name: Covey
- first_name: Johannes M
full_name: Fink, Johannes M
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
- first_name: Karl
full_name: Petersson, Karl
last_name: Petersson
- first_name: Stefan
full_name: Preble, Stefan
last_name: Preble
citation:
ama: 'Sigillito AJ, Covey JP, Fink JM, Petersson K, Preble S. Emerging qubit systems:
Guest editorial. Applied Physics Letters. 2022;120(19). doi:10.1063/5.0097339'
apa: 'Sigillito, A. J., Covey, J. P., Fink, J. M., Petersson, K., & Preble,
S. (2022). Emerging qubit systems: Guest editorial. Applied Physics Letters.
American Institute of Physics. https://doi.org/10.1063/5.0097339'
chicago: 'Sigillito, Anthony J., Jacob P. Covey, Johannes M Fink, Karl Petersson,
and Stefan Preble. “Emerging Qubit Systems: Guest Editorial.” Applied Physics
Letters. American Institute of Physics, 2022. https://doi.org/10.1063/5.0097339.'
ieee: 'A. J. Sigillito, J. P. Covey, J. M. Fink, K. Petersson, and S. Preble, “Emerging
qubit systems: Guest editorial,” Applied Physics Letters, vol. 120, no.
19. American Institute of Physics, 2022.'
ista: 'Sigillito AJ, Covey JP, Fink JM, Petersson K, Preble S. 2022. Emerging qubit
systems: Guest editorial. Applied Physics Letters. 120(19), 190401.'
mla: 'Sigillito, Anthony J., et al. “Emerging Qubit Systems: Guest Editorial.” Applied
Physics Letters, vol. 120, no. 19, 190401, American Institute of Physics,
2022, doi:10.1063/5.0097339.'
short: A.J. Sigillito, J.P. Covey, J.M. Fink, K. Petersson, S. Preble, Applied Physics
Letters 120 (2022).
date_created: 2022-05-29T22:01:53Z
date_published: 2022-05-12T00:00:00Z
date_updated: 2023-08-03T07:16:20Z
day: '12'
department:
- _id: JoFi
doi: 10.1063/5.0097339
external_id:
isi:
- '000796002100002'
intvolume: ' 120'
isi: 1
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1063/5.0097339
month: '05'
oa: 1
oa_version: Published Version
publication: Applied Physics Letters
publication_identifier:
issn:
- 0003-6951
publication_status: published
publisher: American Institute of Physics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Emerging qubit systems: Guest editorial'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 120
year: '2022'
...
---
_id: '11418'
abstract:
- lang: eng
text: "We consider the quadratic form of a general high-rank deterministic matrix
on the eigenvectors of an N×N\r\nWigner matrix and prove that it has Gaussian
fluctuation for each bulk eigenvector in the large N limit. The proof is a combination
of the energy method for the Dyson Brownian motion inspired by Marcinek and Yau
(2021) and our recent multiresolvent local laws (Comm. Math. Phys. 388 (2021)
1005–1048)."
acknowledgement: L.E. would like to thank Zhigang Bao for many illuminating discussions
in an early stage of this research. The authors are also grateful to Paul Bourgade
for his comments on the manuscript and the anonymous referee for several useful
suggestions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giorgio
full_name: Cipolloni, Giorgio
id: 42198EFA-F248-11E8-B48F-1D18A9856A87
last_name: Cipolloni
orcid: 0000-0002-4901-7992
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Dominik J
full_name: Schröder, Dominik J
id: 408ED176-F248-11E8-B48F-1D18A9856A87
last_name: Schröder
orcid: 0000-0002-2904-1856
citation:
ama: Cipolloni G, Erdös L, Schröder DJ. Normal fluctuation in quantum ergodicity
for Wigner matrices. Annals of Probability. 2022;50(3):984-1012. doi:10.1214/21-AOP1552
apa: Cipolloni, G., Erdös, L., & Schröder, D. J. (2022). Normal fluctuation
in quantum ergodicity for Wigner matrices. Annals of Probability. Institute
of Mathematical Statistics. https://doi.org/10.1214/21-AOP1552
chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Normal Fluctuation
in Quantum Ergodicity for Wigner Matrices.” Annals of Probability. Institute
of Mathematical Statistics, 2022. https://doi.org/10.1214/21-AOP1552.
ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Normal fluctuation in quantum
ergodicity for Wigner matrices,” Annals of Probability, vol. 50, no. 3.
Institute of Mathematical Statistics, pp. 984–1012, 2022.
ista: Cipolloni G, Erdös L, Schröder DJ. 2022. Normal fluctuation in quantum ergodicity
for Wigner matrices. Annals of Probability. 50(3), 984–1012.
mla: Cipolloni, Giorgio, et al. “Normal Fluctuation in Quantum Ergodicity for Wigner
Matrices.” Annals of Probability, vol. 50, no. 3, Institute of Mathematical
Statistics, 2022, pp. 984–1012, doi:10.1214/21-AOP1552.
short: G. Cipolloni, L. Erdös, D.J. Schröder, Annals of Probability 50 (2022) 984–1012.
date_created: 2022-05-29T22:01:53Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2023-08-03T07:16:53Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/21-AOP1552
external_id:
arxiv:
- '2103.06730'
isi:
- '000793963400005'
intvolume: ' 50'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2103.06730
month: '05'
oa: 1
oa_version: Preprint
page: 984-1012
publication: Annals of Probability
publication_identifier:
eissn:
- 2168-894X
issn:
- 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Normal fluctuation in quantum ergodicity for Wigner matrices
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 50
year: '2022'
...
---
_id: '11419'
abstract:
- lang: eng
text: Elevation of soluble wild-type (WT) tau occurs in synaptic compartments in
Alzheimer’s disease. We addressed whether tau elevation affects synaptic transmission
at the calyx of Held in slices from mice brainstem. Whole-cell loading of WT human
tau (h-tau) in presynaptic terminals at 10–20 µM caused microtubule (MT) assembly
and activity-dependent rundown of excitatory neurotransmission. Capacitance measurements
revealed that the primary target of WT h-tau is vesicle endocytosis. Blocking
MT assembly using nocodazole prevented tau-induced impairments of endocytosis
and neurotransmission. Immunofluorescence imaging analyses revealed that MT assembly
by WT h-tau loading was associated with an increased MT-bound fraction of the
endocytic protein dynamin. A synthetic dodecapeptide corresponding to dynamin
1-pleckstrin-homology domain inhibited MT-dynamin interaction and rescued tau-induced
impairments of endocytosis and neurotransmission. We conclude that elevation of
presynaptic WT tau induces de novo assembly of MTs, thereby sequestering free
dynamins. As a result, endocytosis and subsequent vesicle replenishment are impaired,
causing activity-dependent rundown of neurotransmission.
acknowledgement: We thank Yasuo Ihara, Nobuyuki Nukina, and Takeshi Sakaba for comments
and Patrick Stoney for editing this paper. We also thank Shota Okuda and Mikako
Matsubara for their contributions in the early stage of this study, and Satoko Wada-Kakuda
for technical assistant with in vitro analysis of tau. This research was supported
by funding from Okinawa Institute of Science and Technology and from Technology
(OIST) and Core Research for the Evolutional Science and Technology of Japan Science
and Technology Agency (CREST) to TT, and by Scientific Research on Innovative Areas
to TM (Brain Protein Aging and Dementia Control 26117004).
article_number: e73542
article_processing_charge: No
article_type: original
author:
- first_name: Tetsuya
full_name: Hori, Tetsuya
last_name: Hori
- first_name: Kohgaku
full_name: Eguchi, Kohgaku
id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
last_name: Eguchi
orcid: 0000-0002-6170-2546
- first_name: Han Ying
full_name: Wang, Han Ying
last_name: Wang
- first_name: Tomohiro
full_name: Miyasaka, Tomohiro
last_name: Miyasaka
- first_name: Laurent
full_name: Guillaud, Laurent
last_name: Guillaud
- first_name: Zacharie
full_name: Taoufiq, Zacharie
last_name: Taoufiq
- first_name: Satyajit
full_name: Mahapatra, Satyajit
last_name: Mahapatra
- first_name: Hiroshi
full_name: Yamada, Hiroshi
last_name: Yamada
- first_name: Kohji
full_name: Takei, Kohji
last_name: Takei
- first_name: Tomoyuki
full_name: Takahashi, Tomoyuki
last_name: Takahashi
citation:
ama: Hori T, Eguchi K, Wang HY, et al. Microtubule assembly by tau impairs endocytosis
and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
model. eLife. 2022;11. doi:10.7554/eLife.73542
apa: Hori, T., Eguchi, K., Wang, H. Y., Miyasaka, T., Guillaud, L., Taoufiq, Z.,
… Takahashi, T. (2022). Microtubule assembly by tau impairs endocytosis and neurotransmission
via dynamin sequestration in Alzheimer’s disease synapse model. ELife.
eLife Sciences Publications. https://doi.org/10.7554/eLife.73542
chicago: Hori, Tetsuya, Kohgaku Eguchi, Han Ying Wang, Tomohiro Miyasaka, Laurent
Guillaud, Zacharie Taoufiq, Satyajit Mahapatra, Hiroshi Yamada, Kohji Takei, and
Tomoyuki Takahashi. “Microtubule Assembly by Tau Impairs Endocytosis and Neurotransmission
via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.” ELife.
eLife Sciences Publications, 2022. https://doi.org/10.7554/eLife.73542.
ieee: T. Hori et al., “Microtubule assembly by tau impairs endocytosis and
neurotransmission via dynamin sequestration in Alzheimer’s disease synapse model,”
eLife, vol. 11. eLife Sciences Publications, 2022.
ista: Hori T, Eguchi K, Wang HY, Miyasaka T, Guillaud L, Taoufiq Z, Mahapatra S,
Yamada H, Takei K, Takahashi T. 2022. Microtubule assembly by tau impairs endocytosis
and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
model. eLife. 11, e73542.
mla: Hori, Tetsuya, et al. “Microtubule Assembly by Tau Impairs Endocytosis and
Neurotransmission via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.”
ELife, vol. 11, e73542, eLife Sciences Publications, 2022, doi:10.7554/eLife.73542.
short: T. Hori, K. Eguchi, H.Y. Wang, T. Miyasaka, L. Guillaud, Z. Taoufiq, S. Mahapatra,
H. Yamada, K. Takei, T. Takahashi, ELife 11 (2022).
date_created: 2022-05-29T22:01:54Z
date_published: 2022-05-05T00:00:00Z
date_updated: 2023-08-03T07:15:49Z
day: '05'
ddc:
- '616'
department:
- _id: RySh
doi: 10.7554/eLife.73542
external_id:
isi:
- '000876231600001'
pmid:
- '35471147 '
file:
- access_level: open_access
checksum: ccddbd167e00ff8375f12998af497152
content_type: application/pdf
creator: cchlebak
date_created: 2022-05-30T08:09:16Z
date_updated: 2022-05-30T08:09:16Z
file_id: '11421'
file_name: elife-73542-v2.pdf
file_size: 2466296
relation: main_file
success: 1
file_date_updated: 2022-05-30T08:09:16Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
eissn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microtubule assembly by tau impairs endocytosis and neurotransmission via dynamin
sequestration in Alzheimer's disease synapse model
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2022'
...
---
_id: '11428'
abstract:
- lang: eng
text: The medial axis of a set consists of the points in the ambient space without
a unique closest point on the original set. Since its introduction, the medial
axis has been used extensively in many applications as a method of computing a
topologically equivalent skeleton. Unfortunately, one limiting factor in the use
of the medial axis of a smooth manifold is that it is not necessarily topologically
stable under small perturbations of the manifold. To counter these instabilities
various prunings of the medial axis have been proposed. Here, we examine one type
of pruning, called burning. Because of the good experimental results, it was hoped
that the burning method of simplifying the medial axis would be stable. In this
work we show a simple example that dashes such hopes based on Bing’s house with
two rooms, demonstrating an isotopy of a shape where the medial axis goes from
collapsible to non-collapsible.
acknowledgement: 'Partially supported by the DFG Collaborative Research Center TRR
109, “Discretization in Geometry and Dynamics” and the European Research Council
(ERC), grant no. 788183, “Alpha Shape Theory Extended”. Erin Chambers: Supported
in part by the National Science Foundation through grants DBI-1759807, CCF-1907612,
and CCF-2106672. Mathijs Wintraecken: Supported by the European Union’s Horizon
2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement
No. 754411. The Austrian science fund (FWF) M-3073 Acknowledgements We thank André
Lieutier, David Letscher, Ellen Gasparovic, Kathryn Leonard, and Tao Ju for early
discussions on this work. We also thank Lu Liu, Yajie Yan and Tao Ju for sharing
code to generate the examples.'
article_processing_charge: No
author:
- first_name: Erin
full_name: Chambers, Erin
last_name: Chambers
- first_name: Christopher D
full_name: Fillmore, Christopher D
id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
last_name: Fillmore
- first_name: Elizabeth R
full_name: Stephenson, Elizabeth R
id: 2D04F932-F248-11E8-B48F-1D18A9856A87
last_name: Stephenson
orcid: 0000-0002-6862-208X
- first_name: Mathijs
full_name: Wintraecken, Mathijs
id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
last_name: Wintraecken
orcid: 0000-0002-7472-2220
citation:
ama: 'Chambers E, Fillmore CD, Stephenson ER, Wintraecken M. A cautionary tale:
Burning the medial axis is unstable. In: Goaoc X, Kerber M, eds. 38th International
Symposium on Computational Geometry. Vol 224. LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik; 2022:66:1-66:9. doi:10.4230/LIPIcs.SoCG.2022.66'
apa: 'Chambers, E., Fillmore, C. D., Stephenson, E. R., & Wintraecken, M. (2022).
A cautionary tale: Burning the medial axis is unstable. In X. Goaoc & M. Kerber
(Eds.), 38th International Symposium on Computational Geometry (Vol. 224,
p. 66:1-66:9). Berlin, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPIcs.SoCG.2022.66'
chicago: 'Chambers, Erin, Christopher D Fillmore, Elizabeth R Stephenson, and Mathijs
Wintraecken. “A Cautionary Tale: Burning the Medial Axis Is Unstable.” In 38th
International Symposium on Computational Geometry, edited by Xavier Goaoc
and Michael Kerber, 224:66:1-66:9. LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2022. https://doi.org/10.4230/LIPIcs.SoCG.2022.66.'
ieee: 'E. Chambers, C. D. Fillmore, E. R. Stephenson, and M. Wintraecken, “A cautionary
tale: Burning the medial axis is unstable,” in 38th International Symposium
on Computational Geometry, Berlin, Germany, 2022, vol. 224, p. 66:1-66:9.'
ista: 'Chambers E, Fillmore CD, Stephenson ER, Wintraecken M. 2022. A cautionary
tale: Burning the medial axis is unstable. 38th International Symposium on Computational
Geometry. SoCG: Symposium on Computational GeometryLIPIcs vol. 224, 66:1-66:9.'
mla: 'Chambers, Erin, et al. “A Cautionary Tale: Burning the Medial Axis Is Unstable.”
38th International Symposium on Computational Geometry, edited by Xavier
Goaoc and Michael Kerber, vol. 224, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2022, p. 66:1-66:9, doi:10.4230/LIPIcs.SoCG.2022.66.'
short: E. Chambers, C.D. Fillmore, E.R. Stephenson, M. Wintraecken, in:, X. Goaoc,
M. Kerber (Eds.), 38th International Symposium on Computational Geometry, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2022, p. 66:1-66:9.
conference:
end_date: 2022-06-10
location: Berlin, Germany
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2022-06-07
corr_author: '1'
date_created: 2022-06-01T14:18:04Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2025-04-14T07:43:57Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2022.66
ec_funded: 1
editor:
- first_name: Xavier
full_name: Goaoc, Xavier
last_name: Goaoc
- first_name: Michael
full_name: Kerber, Michael
last_name: Kerber
file:
- access_level: open_access
checksum: b25ce40fade4ebc0bcaae176db4f5f1f
content_type: application/pdf
creator: dernst
date_created: 2022-06-07T07:58:30Z
date_updated: 2022-06-07T07:58:30Z
file_id: '11437'
file_name: 2022_LIPICs_Chambers.pdf
file_size: 17580705
relation: main_file
success: 1
file_date_updated: 2022-06-07T07:58:30Z
has_accepted_license: '1'
intvolume: ' 224'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 66:1-66:9
project:
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
grant_number: M03073
name: Learning and triangulating manifolds via collapses
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: 38th International Symposium on Computational Geometry
publication_identifier:
isbn:
- 978-3-95977-227-3
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
series_title: LIPIcs
status: public
title: 'A cautionary tale: Burning the medial axis is unstable'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 224
year: '2022'
...
---
_id: '11429'
abstract:
- lang: eng
text: "This book constitutes the refereed proceedings of the 18th International
Symposium on Web and Wireless Geographical Information Systems, W2GIS 2022, held
in Konstanz, Germany, in April 2022.\r\nThe 7 full papers presented together with
6 short papers in the volume were carefully reviewed and selected from 16 submissions.
\ The papers cover topics that range from mobile GIS and Location-Based Services
to Spatial Information Retrieval and Wireless Sensor Networks."
alternative_title:
- LNCS
article_processing_charge: No
citation:
ama: 'Karimipour F, Storandt S, eds. Web and Wireless Geographical Information
Systems. Vol 13238. 1st ed. Cham: Springer Nature; 2022. doi:10.1007/978-3-031-06245-2'
apa: 'Karimipour, F., & Storandt, S. (Eds.). (2022). Web and Wireless Geographical
Information Systems (1st ed., Vol. 13238). Cham: Springer Nature. https://doi.org/10.1007/978-3-031-06245-2'
chicago: 'Karimipour, Farid, and Sabine Storandt, eds. Web and Wireless Geographical
Information Systems. 1st ed. Vol. 13238. Cham: Springer Nature, 2022. https://doi.org/10.1007/978-3-031-06245-2.'
ieee: 'F. Karimipour and S. Storandt, Eds., Web and Wireless Geographical Information
Systems, 1st ed., vol. 13238. Cham: Springer Nature, 2022.'
ista: 'Karimipour F, Storandt S eds. 2022. Web and Wireless Geographical Information
Systems 1st ed., Cham: Springer Nature, 153p.'
mla: Karimipour, Farid, and Sabine Storandt, editors. Web and Wireless Geographical
Information Systems. 1st ed., vol. 13238, Springer Nature, 2022, doi:10.1007/978-3-031-06245-2.
short: F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information
Systems, 1st ed., Springer Nature, Cham, 2022.
corr_author: '1'
date_created: 2022-06-02T05:40:53Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2024-10-09T21:02:30Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-031-06245-2
edition: '1'
editor:
- first_name: Farid
full_name: Karimipour, Farid
id: 2A2BCDC4-CF62-11E9-BE5E-3B1EE6697425
last_name: Karimipour
orcid: 0000-0001-6746-4174
- first_name: Sabine
full_name: Storandt, Sabine
last_name: Storandt
intvolume: ' 13238'
language:
- iso: eng
month: '05'
oa_version: None
page: '153'
place: Cham
publication_identifier:
eisbn:
- '9783031062452'
eissn:
- 1611-3349
isbn:
- '9783031062445'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Web and Wireless Geographical Information Systems
type: book_editor
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13238
year: '2022'
...
---
_id: '11432'
abstract:
- lang: eng
text: "This paper proposes a method for simulating liquids in large bodies of water
by coupling together a water surface wave simulator with a 3D Navier-Stokes simulator.
The surface wave simulation uses the equivalent sources method (ESM) to efficiently
animate large bodies of water with precisely controllable wave propagation behavior.
The 3D liquid simulator animates complex non-linear fluid behaviors like splashes
and breaking waves using off-the-shelf simulators using FLIP or the level set
method with semi-Lagrangian advection.\r\nWe combine the two approaches by using
the 3D solver to animate localized non-linear behaviors, and the 2D wave solver
to animate larger regions with linear surface physics. We use the surface motion
from the 3D solver as boundary conditions for 2D surface wave simulator, and we
use the velocity and surface heights from the 2D surface wave simulator as boundary
conditions for the 3D fluid simulation. We also introduce a novel technique for
removing visual artifacts caused by numerical errors in 3D fluid solvers: we use
experimental data to estimate the artificial dispersion caused by the 3D solver
and we then carefully tune the wave speeds of the 2D solver to match it, effectively
eliminating any differences in wave behavior across the boundary. To the best
of our knowledge, this is the first time such a empirically driven error compensation
approach has been used to remove coupling errors from a physics simulator.\r\nOur
coupled simulation approach leverages the strengths of each simulation technique,
animating large environments with seamless transitions between 2D and 3D physics."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We wish to thank the anonymous reviewers and the members of the Visual
Computing Group at IST Austria and MFX Team at INRIA for their valuable feedback.
This research was supported by the Scientific Service Units (SSU) of IST Austria
through resources provided by Scientific Computing. This project has received funding
from the European Research Council (ERC) under the European Union’s Horizon 2020
research and innovation programme under grant agreement No. 638176.
article_processing_charge: No
article_type: original
author:
- first_name: Camille
full_name: Schreck, Camille
id: 2B14B676-F248-11E8-B48F-1D18A9856A87
last_name: Schreck
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Schreck C, Wojtan C. Coupling 3D liquid simulation with 2D wave propagation
for large scale water surface animation using the equivalent sources method. Computer
Graphics Forum. 2022;41(2):343-353. doi:10.1111/cgf.14478
apa: Schreck, C., & Wojtan, C. (2022). Coupling 3D liquid simulation with 2D
wave propagation for large scale water surface animation using the equivalent
sources method. Computer Graphics Forum. Wiley. https://doi.org/10.1111/cgf.14478
chicago: Schreck, Camille, and Chris Wojtan. “Coupling 3D Liquid Simulation with
2D Wave Propagation for Large Scale Water Surface Animation Using the Equivalent
Sources Method.” Computer Graphics Forum. Wiley, 2022. https://doi.org/10.1111/cgf.14478.
ieee: C. Schreck and C. Wojtan, “Coupling 3D liquid simulation with 2D wave propagation
for large scale water surface animation using the equivalent sources method,”
Computer Graphics Forum, vol. 41, no. 2. Wiley, pp. 343–353, 2022.
ista: Schreck C, Wojtan C. 2022. Coupling 3D liquid simulation with 2D wave propagation
for large scale water surface animation using the equivalent sources method. Computer
Graphics Forum. 41(2), 343–353.
mla: Schreck, Camille, and Chris Wojtan. “Coupling 3D Liquid Simulation with 2D
Wave Propagation for Large Scale Water Surface Animation Using the Equivalent
Sources Method.” Computer Graphics Forum, vol. 41, no. 2, Wiley, 2022,
pp. 343–53, doi:10.1111/cgf.14478.
short: C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.
corr_author: '1'
date_created: 2022-06-05T22:01:49Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2024-10-22T09:58:19Z
day: '01'
department:
- _id: ChWo
doi: 10.1111/cgf.14478
ec_funded: 1
external_id:
isi:
- '000802723900027'
intvolume: ' 41'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://hal.archives-ouvertes.fr/hal-03641349/
month: '05'
oa: 1
oa_version: Submitted Version
page: 343-353
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
Scales'
publication: Computer Graphics Forum
publication_identifier:
eissn:
- 1467-8659
issn:
- 0167-7055
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coupling 3D liquid simulation with 2D wave propagation for large scale water
surface animation using the equivalent sources method
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...
---
_id: '11435'
abstract:
- lang: eng
text: 'We introduce a new variant of quantitative Helly-type theorems: the minimal
homothetic distance of the intersection of a family of convex sets to the intersection
of a subfamily of a fixed size. As an application, we establish the following
quantitative Helly-type result for the diameter. If $K$ is the intersection of
finitely many convex bodies in $\mathbb{R}^d$, then one can select $2d$ of these
bodies whose intersection is of diameter at most $(2d)^3{diam}(K)$. The best previously
known estimate, due to Brazitikos [Bull. Hellenic Math. Soc., 62 (2018), pp. 19--25],
is $c d^{11/2}$. Moreover, we confirm that the multiplicative factor $c d^{1/2}$
conjectured by Bárány, Katchalski, and Pach [Proc. Amer. Math. Soc., 86 (1982),
pp. 109--114] cannot be improved. The bounds above follow from our key result
that concerns sparse approximation of a convex polytope by the convex hull of
a well-chosen subset of its vertices: Assume that $Q \subset {\mathbb R}^d$ is
a polytope whose centroid is the origin. Then there exist at most 2d vertices
of $Q$ whose convex hull $Q^{\prime \prime}$ satisfies $Q \subset - 8d^3 Q^{\prime
\prime}.$'
acknowledgement: "G.I. acknowledges the financial support from the Ministry of Educational
and Science of the Russian Federation in the framework of MegaGrant no 075-15-2019-1926.
M.N. was supported by the National Research, Development and Innovation Fund (NRDI)
grants K119670 and\r\nKKP-133864 as well as the Bolyai Scholarship of the Hungarian
Academy of Sciences and the New National Excellence Programme and the TKP2020-NKA-06
program provided by the NRDI."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
- first_name: Marton
full_name: Naszodi, Marton
last_name: Naszodi
citation:
ama: 'Ivanov G, Naszodi M. A quantitative Helly-type theorem: Containment in a homothet.
SIAM Journal on Discrete Mathematics. 2022;36(2):951-957. doi:10.1137/21M1403308'
apa: 'Ivanov, G., & Naszodi, M. (2022). A quantitative Helly-type theorem: Containment
in a homothet. SIAM Journal on Discrete Mathematics. Society for Industrial
and Applied Mathematics. https://doi.org/10.1137/21M1403308'
chicago: 'Ivanov, Grigory, and Marton Naszodi. “A Quantitative Helly-Type Theorem:
Containment in a Homothet.” SIAM Journal on Discrete Mathematics. Society
for Industrial and Applied Mathematics, 2022. https://doi.org/10.1137/21M1403308.'
ieee: 'G. Ivanov and M. Naszodi, “A quantitative Helly-type theorem: Containment
in a homothet,” SIAM Journal on Discrete Mathematics, vol. 36, no. 2. Society
for Industrial and Applied Mathematics, pp. 951–957, 2022.'
ista: 'Ivanov G, Naszodi M. 2022. A quantitative Helly-type theorem: Containment
in a homothet. SIAM Journal on Discrete Mathematics. 36(2), 951–957.'
mla: 'Ivanov, Grigory, and Marton Naszodi. “A Quantitative Helly-Type Theorem: Containment
in a Homothet.” SIAM Journal on Discrete Mathematics, vol. 36, no. 2, Society
for Industrial and Applied Mathematics, 2022, pp. 951–57, doi:10.1137/21M1403308.'
short: G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
date_created: 2022-06-05T22:01:50Z
date_published: 2022-04-11T00:00:00Z
date_updated: 2023-10-18T06:58:03Z
day: '11'
department:
- _id: UlWa
doi: 10.1137/21M1403308
external_id:
arxiv:
- '2103.04122'
isi:
- '000793158200002'
intvolume: ' 36'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.2103.04122'
month: '04'
oa: 1
oa_version: Preprint
page: 951-957
publication: SIAM Journal on Discrete Mathematics
publication_identifier:
issn:
- 0895-4801
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'A quantitative Helly-type theorem: Containment in a homothet'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2022'
...
---
_id: '10016'
abstract:
- lang: eng
text: 'Auxin has always been at the forefront of research in plant physiology and
development. Since the earliest contemplations by Julius von Sachs and Charles
Darwin, more than a century-long struggle has been waged to understand its function.
This largely reflects the failures, successes, and inevitable progress in the
entire field of plant signaling and development. Here I present 14 stations on
our long and sometimes mystical journey to understand auxin. These highlights
were selected to give a flavor of the field and to show the scope and limits of
our current knowledge. A special focus is put on features that make auxin unique
among phytohormones, such as its dynamic, directional transport network, which
integrates external and internal signals, including self-organizing feedback.
Accented are persistent mysteries and controversies. The unexpected discoveries
related to rapid auxin responses and growth regulation recently disturbed our
contentment regarding understanding of the auxin signaling mechanism. These new
revelations, along with advances in technology, usher us into a new, exciting
era in auxin research. '
acknowledgement: "The author thanks the whole community of researchers consciously
or unconsciously working on questions related to auxin, whose hard work and enthusiasm
contributed to development of this exciting story. Particular thanks go to many\r\nbrilliant
present and past members of the Friml group and our numerous excellent collaborators,
without whom my own personal journey would not be possible. The way of the cross
with its 14 stations is a popular devotion among Roman Catholics and inspires them
to make a spiritual pilgrimage through contemplation of Christ on his last day.
Its aspects of gradual progress, struggle, passion, and revelation served as an
inspiration for the formal depiction of our journey to understanding auxin as described
in this review. It is in no way intended to reflect the personal beliefs of the
author and readers. I am grateful to Nick Barton, Eva Benková, Lenka Caisová, Matyáš
Fendrych, Lukáš Fiedler, Monika Frátriková, Jarmila Frimlová, Michelle Gallei, Jakub
Hajný, Lukas Hoermayer, Alexandra Mally, Ondrˇej Novák, Jan Petrášek, Aleš Pěnčík,
Steffen Vanneste, Tongda Xu, and Zhenbiao Yang for their valuable comments. Special
thanks go to Michelle Gallei for her invaluable assistance with the figures."
article_number: a039859
article_processing_charge: No
article_type: review
author:
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Friml J. Fourteen stations of auxin. Cold Spring Harbor Perspectives in
Biology. 2022;14(5). doi:10.1101/cshperspect.a039859
apa: Friml, J. (2022). Fourteen stations of auxin. Cold Spring Harbor Perspectives
in Biology. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/cshperspect.a039859
chicago: Friml, Jiří. “Fourteen Stations of Auxin.” Cold Spring Harbor Perspectives
in Biology. Cold Spring Harbor Laboratory Press, 2022. https://doi.org/10.1101/cshperspect.a039859.
ieee: J. Friml, “Fourteen stations of auxin,” Cold Spring Harbor Perspectives
in Biology, vol. 14, no. 5. Cold Spring Harbor Laboratory Press, 2022.
ista: Friml J. 2022. Fourteen stations of auxin. Cold Spring Harbor Perspectives
in Biology. 14(5), a039859.
mla: Friml, Jiří. “Fourteen Stations of Auxin.” Cold Spring Harbor Perspectives
in Biology, vol. 14, no. 5, a039859, Cold Spring Harbor Laboratory Press,
2022, doi:10.1101/cshperspect.a039859.
short: J. Friml, Cold Spring Harbor Perspectives in Biology 14 (2022).
corr_author: '1'
date_created: 2021-09-14T11:36:53Z
date_published: 2022-05-27T00:00:00Z
date_updated: 2025-05-14T11:22:36Z
day: '27'
department:
- _id: JiFr
doi: 10.1101/cshperspect.a039859
external_id:
isi:
- '000806563000003'
pmid:
- '34400554'
intvolume: ' 14'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: 'https://doi.org/10.1101/cshperspect.a039859 '
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Cold Spring Harbor Perspectives in Biology
publication_identifier:
issn:
- 1943-0264
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fourteen stations of auxin
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2022'
...
---
_id: '10181'
abstract:
- lang: eng
text: In this article we study some geometric properties of proximally smooth sets.
First, we introduce a modification of the metric projection and prove its existence.
Then we provide an algorithm for constructing a rectifiable curve between two
sufficiently close points of a proximally smooth set in a uniformly convex and
uniformly smooth Banach space, with the moduli of smoothness and convexity of
power type. Our algorithm returns a reasonably short curve between two sufficiently
close points of a proximally smooth set, is iterative and uses our modification
of the metric projection. We estimate the length of the constructed curve and
its deviation from the segment with the same endpoints. These estimates coincide
up to a constant factor with those for the geodesics in a proximally smooth set
in a Hilbert space.
acknowledgement: Theorem 2 was obtained at Steklov Mathematical Institute RAS and
supported by Russian Science Foundation, grant N 19-11-00087.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
- first_name: Mariana S.
full_name: Lopushanski, Mariana S.
last_name: Lopushanski
citation:
ama: Ivanov G, Lopushanski MS. Rectifiable curves in proximally smooth sets. Set-Valued
and Variational Analysis. 2022;30(2):657-675. doi:10.1007/s11228-021-00612-1
apa: Ivanov, G., & Lopushanski, M. S. (2022). Rectifiable curves in proximally
smooth sets. Set-Valued and Variational Analysis. Springer Nature. https://doi.org/10.1007/s11228-021-00612-1
chicago: Ivanov, Grigory, and Mariana S. Lopushanski. “Rectifiable Curves in Proximally
Smooth Sets.” Set-Valued and Variational Analysis. Springer Nature, 2022.
https://doi.org/10.1007/s11228-021-00612-1.
ieee: G. Ivanov and M. S. Lopushanski, “Rectifiable curves in proximally smooth
sets,” Set-Valued and Variational Analysis, vol. 30, no. 2. Springer Nature,
pp. 657–675, 2022.
ista: Ivanov G, Lopushanski MS. 2022. Rectifiable curves in proximally smooth sets.
Set-Valued and Variational Analysis. 30(2), 657–675.
mla: Ivanov, Grigory, and Mariana S. Lopushanski. “Rectifiable Curves in Proximally
Smooth Sets.” Set-Valued and Variational Analysis, vol. 30, no. 2, Springer
Nature, 2022, pp. 657–75, doi:10.1007/s11228-021-00612-1.
short: G. Ivanov, M.S. Lopushanski, Set-Valued and Variational Analysis 30 (2022)
657–675.
date_created: 2021-10-24T22:01:35Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2024-05-22T09:23:37Z
day: '01'
department:
- _id: UlWa
doi: 10.1007/s11228-021-00612-1
external_id:
arxiv:
- '2012.10691'
isi:
- '000705774800001'
intvolume: ' 30'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2012.10691
month: '06'
oa: 1
oa_version: Published Version
page: 657-675
publication: Set-Valued and Variational Analysis
publication_identifier:
eissn:
- 1877-0541
issn:
- 0927-6947
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rectifiable curves in proximally smooth sets
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2022'
...
---
_id: '10182'
abstract:
- lang: eng
text: The mitochondrial oxidative phosphorylation system is central to cellular
metabolism. It comprises five enzymatic complexes and two mobile electron carriers
that work in a mitochondrial respiratory chain. By coupling the oxidation of reducing
equivalents coming into mitochondria to the generation and subsequent dissipation
of a proton gradient across the inner mitochondrial membrane, this electron transport
chain drives the production of ATP, which is then used as a primary energy carrier
in virtually all cellular processes. Minimal perturbations of the respiratory
chain activity are linked to diseases; therefore, it is necessary to understand
how these complexes are assembled and regulated and how they function. In this
Review, we outline the latest assembly models for each individual complex, and
we also highlight the recent discoveries indicating that the formation of larger
assemblies, known as respiratory supercomplexes, originates from the association
of the intermediates of individual complexes. We then discuss how recent cryo-electron
microscopy structures have been key to answering open questions on the function
of the electron transport chain in mitochondrial respiration and how supercomplexes
and other factors, including metabolites, can regulate the activity of the single
complexes. When relevant, we discuss how these mechanisms contribute to physiology
and outline their deregulation in human diseases.
article_processing_charge: No
article_type: original
author:
- first_name: Irene
full_name: Vercellino, Irene
id: 3ED6AF16-F248-11E8-B48F-1D18A9856A87
last_name: Vercellino
orcid: ' 0000-0001-5618-3449'
- first_name: Leonid A
full_name: Sazanov, Leonid A
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: Vercellino I, Sazanov LA. The assembly, regulation and function of the mitochondrial
respiratory chain. Nature Reviews Molecular Cell Biology. 2022;23:141–161.
doi:10.1038/s41580-021-00415-0
apa: Vercellino, I., & Sazanov, L. A. (2022). The assembly, regulation and function
of the mitochondrial respiratory chain. Nature Reviews Molecular Cell Biology.
Springer Nature. https://doi.org/10.1038/s41580-021-00415-0
chicago: Vercellino, Irene, and Leonid A Sazanov. “The Assembly, Regulation and
Function of the Mitochondrial Respiratory Chain.” Nature Reviews Molecular
Cell Biology. Springer Nature, 2022. https://doi.org/10.1038/s41580-021-00415-0.
ieee: I. Vercellino and L. A. Sazanov, “The assembly, regulation and function of
the mitochondrial respiratory chain,” Nature Reviews Molecular Cell Biology,
vol. 23. Springer Nature, pp. 141–161, 2022.
ista: Vercellino I, Sazanov LA. 2022. The assembly, regulation and function of the
mitochondrial respiratory chain. Nature Reviews Molecular Cell Biology. 23, 141–161.
mla: Vercellino, Irene, and Leonid A. Sazanov. “The Assembly, Regulation and Function
of the Mitochondrial Respiratory Chain.” Nature Reviews Molecular Cell Biology,
vol. 23, Springer Nature, 2022, pp. 141–161, doi:10.1038/s41580-021-00415-0.
short: I. Vercellino, L.A. Sazanov, Nature Reviews Molecular Cell Biology 23 (2022)
141–161.
corr_author: '1'
date_created: 2021-10-24T22:01:35Z
date_published: 2022-02-01T00:00:00Z
date_updated: 2024-10-09T21:01:03Z
day: '01'
department:
- _id: LeSa
doi: 10.1038/s41580-021-00415-0
external_id:
isi:
- '000705697100001'
pmid:
- '34621061'
intvolume: ' 23'
isi: 1
language:
- iso: eng
month: '02'
oa_version: None
page: 141–161
pmid: 1
publication: Nature Reviews Molecular Cell Biology
publication_identifier:
eissn:
- 1471-0080
issn:
- 1471-0072
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The assembly, regulation and function of the mitochondrial respiratory chain
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 23
year: '2022'
...
---
_id: '10211'
abstract:
- lang: eng
text: "We study the problem of recovering an unknown signal \U0001D465\U0001D465
given measurements obtained from a generalized linear model with a Gaussian sensing
matrix. Two popular solutions are based on a linear estimator \U0001D465\U0001D465^L
and a spectral estimator \U0001D465\U0001D465^s. The former is a data-dependent
linear combination of the columns of the measurement matrix, and its analysis
is quite simple. The latter is the principal eigenvector of a data-dependent matrix,
and a recent line of work has studied its performance. In this paper, we show
how to optimally combine \U0001D465\U0001D465^L and \U0001D465\U0001D465^s. At
the heart of our analysis is the exact characterization of the empirical joint
distribution of (\U0001D465\U0001D465,\U0001D465\U0001D465^L,\U0001D465\U0001D465^s)
in the high-dimensional limit. This allows us to compute the Bayes-optimal combination
of \U0001D465\U0001D465^L and \U0001D465\U0001D465^s, given the limiting distribution
of the signal \U0001D465\U0001D465. When the distribution of the signal is Gaussian,
then the Bayes-optimal combination has the form \U0001D703\U0001D465\U0001D465^L+\U0001D465\U0001D465^s
and we derive the optimal combination coefficient. In order to establish the limiting
distribution of (\U0001D465\U0001D465,\U0001D465\U0001D465^L,\U0001D465\U0001D465^s),
we design and analyze an approximate message passing algorithm whose iterates
give \U0001D465\U0001D465^L and approach \U0001D465\U0001D465^s. Numerical simulations
demonstrate the improvement of the proposed combination with respect to the two
methods considered separately."
acknowledgement: M. Mondelli would like to thank Andrea Montanari for helpful discussions.
All the authors would like to thank the anonymous reviewers for their helpful comments.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Christos
full_name: Thrampoulidis, Christos
last_name: Thrampoulidis
- first_name: Ramji
full_name: Venkataramanan, Ramji
last_name: Venkataramanan
citation:
ama: Mondelli M, Thrampoulidis C, Venkataramanan R. Optimal combination of linear
and spectral estimators for generalized linear models. Foundations of Computational
Mathematics. 2022;22(5):1513-1566. doi:10.1007/s10208-021-09531-x
apa: Mondelli, M., Thrampoulidis, C., & Venkataramanan, R. (2022). Optimal combination
of linear and spectral estimators for generalized linear models. Foundations
of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-021-09531-x
chicago: Mondelli, Marco, Christos Thrampoulidis, and Ramji Venkataramanan. “Optimal
Combination of Linear and Spectral Estimators for Generalized Linear Models.”
Foundations of Computational Mathematics. Springer, 2022. https://doi.org/10.1007/s10208-021-09531-x.
ieee: M. Mondelli, C. Thrampoulidis, and R. Venkataramanan, “Optimal combination
of linear and spectral estimators for generalized linear models,” Foundations
of Computational Mathematics, vol. 22, no. 5. Springer, pp. 1513–1566, 2022.
ista: Mondelli M, Thrampoulidis C, Venkataramanan R. 2022. Optimal combination of
linear and spectral estimators for generalized linear models. Foundations of Computational
Mathematics. 22(5), 1513–1566.
mla: Mondelli, Marco, et al. “Optimal Combination of Linear and Spectral Estimators
for Generalized Linear Models.” Foundations of Computational Mathematics,
vol. 22, no. 5, Springer, 2022, pp. 1513–66, doi:10.1007/s10208-021-09531-x.
short: M. Mondelli, C. Thrampoulidis, R. Venkataramanan, Foundations of Computational
Mathematics 22 (2022) 1513–1566.
date_created: 2021-11-03T10:59:08Z
date_published: 2022-10-01T00:00:00Z
date_updated: 2025-04-15T06:53:08Z
day: '01'
ddc:
- '510'
department:
- _id: MaMo
doi: 10.1007/s10208-021-09531-x
external_id:
arxiv:
- '2008.03326'
isi:
- '000685721000001'
file:
- access_level: open_access
checksum: 9ea12dd8045a0678000a3a59295221cb
content_type: application/pdf
creator: alisjak
date_created: 2021-12-13T15:47:54Z
date_updated: 2021-12-13T15:47:54Z
file_id: '10542'
file_name: 2021_Springer_Mondelli.pdf
file_size: 2305731
relation: main_file
success: 1
file_date_updated: 2021-12-13T15:47:54Z
has_accepted_license: '1'
intvolume: ' 22'
isi: 1
issue: '5'
keyword:
- Applied Mathematics
- Computational Theory and Mathematics
- Computational Mathematics
- Analysis
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1513-1566
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Foundations of Computational Mathematics
publication_identifier:
eissn:
- 1615-3383
issn:
- 1615-3375
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal combination of linear and spectral estimators for generalized linear
models
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2022'
...
---
_id: '10282'
abstract:
- lang: eng
text: Advanced transcriptome sequencing has revealed that the majority of eukaryotic
genes undergo alternative splicing (AS). Nonetheless, little effort has been dedicated
to investigating the functional relevance of particular splicing events, even
those in the key developmental and hormonal regulators. Combining approaches of
genetics, biochemistry and advanced confocal microscopy, we describe the impact
of alternative splicing on the PIN7 gene in the model plant Arabidopsis thaliana.
PIN7 encodes a polarly localized transporter for the phytohormone auxin and produces
two evolutionarily conserved transcripts, PIN7a and PIN7b. PIN7a and PIN7b, differing
in a four amino acid stretch, exhibit almost identical expression patterns and
subcellular localization. We reveal that they are closely associated and mutually
influence each other's mobility within the plasma membrane. Phenotypic complementation
tests indicate that the functional contribution of PIN7b per se is minor, but
it markedly reduces the prominent PIN7a activity, which is required for correct
seedling apical hook formation and auxin-mediated tropic responses. Our results
establish alternative splicing of the PIN family as a conserved, functionally
relevant mechanism, revealing an additional regulatory level of auxin-mediated
plant development.
acknowledgement: We thank Claus Schwechheimer for the pin34 and pin347 seeds, Yuliia
Mironova for technical assistance, Ksenia Timofeyenko and Dmitry Konovalov for help
with the evolutional analysis, Konstantin Kutashev and Siarhei Dabravolski for assistance
with FRET-FLIM, Huibin Han for advice with hypocotyl imaging, Karel Müller for the
initial qRT-PCR on the tobacco cell lines, Stano Pekár for suggestions regarding
the statistical analysis of the morphodynamic measurements, and Jozef Mravec, Dolf
Weijers and Lindy Abas for their comments on the manuscript. This work was supported
by the Czech Science Foundation (projects 16-26428S and 19-23773S to IK, MH and
KRůžička, 19-18917S to JHumpolíčková and 18-26981S to JF), and the Ministry of Education,
Youth and Sports of the Czech Republic (MEYS, CZ.02.1.01/0.0/0.0/16_019/0000738)
to KRůžička and JHejátko. The imaging facilities of the Institute of Experimental
Botany and CEITEC are supported by MEYS (LM2018129 – Czech BioImaging and CZ.02.1.01/0.0/0.0/16_013/0001775).
The authors declare no competing interests.
article_processing_charge: No
article_type: original
author:
- first_name: Ivan
full_name: Kashkan, Ivan
last_name: Kashkan
- first_name: Mónika
full_name: Hrtyan, Mónika
id: 45A71A74-F248-11E8-B48F-1D18A9856A87
last_name: Hrtyan
- first_name: Katarzyna
full_name: Retzer, Katarzyna
last_name: Retzer
- first_name: Jana
full_name: Humpolíčková, Jana
last_name: Humpolíčková
- first_name: Aswathy
full_name: Jayasree, Aswathy
last_name: Jayasree
- first_name: Roberta
full_name: Filepová, Roberta
last_name: Filepová
- first_name: Zuzana
full_name: Vondráková, Zuzana
last_name: Vondráková
- first_name: Sibu
full_name: Simon, Sibu
id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
last_name: Simon
orcid: 0000-0002-1998-6741
- first_name: Debbie
full_name: Rombaut, Debbie
last_name: Rombaut
- first_name: Thomas B.
full_name: Jacobs, Thomas B.
last_name: Jacobs
- first_name: Mikko J.
full_name: Frilander, Mikko J.
last_name: Frilander
- first_name: Jan
full_name: Hejátko, Jan
last_name: Hejátko
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Jan
full_name: Petrášek, Jan
last_name: Petrášek
- first_name: Kamil
full_name: Růžička, Kamil
last_name: Růžička
citation:
ama: Kashkan I, Hrtyan M, Retzer K, et al. Mutually opposing activity of PIN7 splicing
isoforms is required for auxin-mediated tropic responses in Arabidopsis thaliana.
New Phytologist. 2022;233(1):329-343. doi:10.1111/nph.17792
apa: Kashkan, I., Hrtyan, M., Retzer, K., Humpolíčková, J., Jayasree, A., Filepová,
R., … Růžička, K. (2022). Mutually opposing activity of PIN7 splicing isoforms
is required for auxin-mediated tropic responses in Arabidopsis thaliana. New
Phytologist. Wiley. https://doi.org/10.1111/nph.17792
chicago: Kashkan, Ivan, Mónika Hrtyan, Katarzyna Retzer, Jana Humpolíčková, Aswathy
Jayasree, Roberta Filepová, Zuzana Vondráková, et al. “Mutually Opposing Activity
of PIN7 Splicing Isoforms Is Required for Auxin-Mediated Tropic Responses in Arabidopsis
Thaliana.” New Phytologist. Wiley, 2022. https://doi.org/10.1111/nph.17792.
ieee: I. Kashkan et al., “Mutually opposing activity of PIN7 splicing isoforms
is required for auxin-mediated tropic responses in Arabidopsis thaliana,” New
Phytologist, vol. 233, no. 1. Wiley, pp. 329–343, 2022.
ista: Kashkan I, Hrtyan M, Retzer K, Humpolíčková J, Jayasree A, Filepová R, Vondráková
Z, Simon S, Rombaut D, Jacobs TB, Frilander MJ, Hejátko J, Friml J, Petrášek J,
Růžička K. 2022. Mutually opposing activity of PIN7 splicing isoforms is required
for auxin-mediated tropic responses in Arabidopsis thaliana. New Phytologist.
233(1), 329–343.
mla: Kashkan, Ivan, et al. “Mutually Opposing Activity of PIN7 Splicing Isoforms
Is Required for Auxin-Mediated Tropic Responses in Arabidopsis Thaliana.” New
Phytologist, vol. 233, no. 1, Wiley, 2022, pp. 329–43, doi:10.1111/nph.17792.
short: I. Kashkan, M. Hrtyan, K. Retzer, J. Humpolíčková, A. Jayasree, R. Filepová,
Z. Vondráková, S. Simon, D. Rombaut, T.B. Jacobs, M.J. Frilander, J. Hejátko,
J. Friml, J. Petrášek, K. Růžička, New Phytologist 233 (2022) 329–343.
date_created: 2021-11-14T23:01:24Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-05-22T11:33:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1111/nph.17792
external_id:
isi:
- '000714678100001'
pmid:
- '34637542'
intvolume: ' 233'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.biorxiv.org/content/10.1101/2020.05.02.074070v2
month: '01'
oa: 1
oa_version: Preprint
page: 329-343
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mutually opposing activity of PIN7 splicing isoforms is required for auxin-mediated
tropic responses in Arabidopsis thaliana
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 233
year: '2022'
...
---
_id: '10284'
abstract:
- lang: eng
text: Infections early in life can have enduring effects on an organism's development
and immunity. In this study, we show that this equally applies to developing ‘superorganisms’––incipient
social insect colonies. When we exposed newly mated Lasius niger ant queens to
a low pathogen dose, their colonies grew more slowly than controls before winter,
but reached similar sizes afterwards. Independent of exposure, queen hibernation
survival improved when the ratio of pupae to workers was small. Queens that reared
fewer pupae before worker emergence exhibited lower pathogen levels, indicating
that high brood rearing efforts interfere with the ability of the queen's immune
system to suppress pathogen proliferation. Early-life queen pathogen exposure
also improved the immunocompetence of her worker offspring, as demonstrated by
challenging the workers to the same pathogen a year later. Transgenerational transfer
of the queen's pathogen experience to her workforce can hence durably reduce the
disease susceptibility of the whole superorganism.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: The authors are grateful to G. Tkačik and V. Mireles for advice on
data analyses and to A. Schloegl for help using the IST Austria HPC cluster for
data processing. The authors thank J. Eilenberg for providing the fungal strain
and A.V. Grasse for support with the molecular analysis. The authors also thank
the Social Immunity group at IST Austria, in particular B. Milutinović, for discussions
throughout and comments on the manuscript.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Barbara E
full_name: Casillas Perez, Barbara E
id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
last_name: Casillas Perez
- first_name: Christopher
full_name: Pull, Christopher
id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
last_name: Pull
orcid: 0000-0003-1122-3982
- first_name: Filip
full_name: Naiser, Filip
last_name: Naiser
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Jiri
full_name: Matas, Jiri
last_name: Matas
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Casillas Perez BE, Pull C, Naiser F, Naderlinger E, Matas J, Cremer S. Early
queen infection shapes developmental dynamics and induces long-term disease protection
in incipient ant colonies. Ecology Letters. 2022;25(1):89-100. doi:10.1111/ele.13907
apa: Casillas Perez, B. E., Pull, C., Naiser, F., Naderlinger, E., Matas, J., &
Cremer, S. (2022). Early queen infection shapes developmental dynamics and induces
long-term disease protection in incipient ant colonies. Ecology Letters.
Wiley. https://doi.org/10.1111/ele.13907
chicago: Casillas Perez, Barbara E, Christopher Pull, Filip Naiser, Elisabeth Naderlinger,
Jiri Matas, and Sylvia Cremer. “Early Queen Infection Shapes Developmental Dynamics
and Induces Long-Term Disease Protection in Incipient Ant Colonies.” Ecology
Letters. Wiley, 2022. https://doi.org/10.1111/ele.13907.
ieee: B. E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, and S.
Cremer, “Early queen infection shapes developmental dynamics and induces long-term
disease protection in incipient ant colonies,” Ecology Letters, vol. 25,
no. 1. Wiley, pp. 89–100, 2022.
ista: Casillas Perez BE, Pull C, Naiser F, Naderlinger E, Matas J, Cremer S. 2022.
Early queen infection shapes developmental dynamics and induces long-term disease
protection in incipient ant colonies. Ecology Letters. 25(1), 89–100.
mla: Casillas Perez, Barbara E., et al. “Early Queen Infection Shapes Developmental
Dynamics and Induces Long-Term Disease Protection in Incipient Ant Colonies.”
Ecology Letters, vol. 25, no. 1, Wiley, 2022, pp. 89–100, doi:10.1111/ele.13907.
short: B.E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, S. Cremer,
Ecology Letters 25 (2022) 89–100.
corr_author: '1'
date_created: 2021-11-14T23:01:25Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2025-04-14T13:55:31Z
day: '01'
ddc:
- '573'
department:
- _id: SyCr
doi: 10.1111/ele.13907
ec_funded: 1
external_id:
isi:
- '000713396100001'
pmid:
- '34725912'
file:
- access_level: open_access
checksum: 0bd4210400e9876609b7c538ab4f9a3c
content_type: application/pdf
creator: cchlebak
date_created: 2022-02-03T13:37:11Z
date_updated: 2022-02-03T13:37:11Z
file_id: '10721'
file_name: 2021_EcologyLetters_CasillasPerez.pdf
file_size: 700087
relation: main_file
success: 1
file_date_updated: 2022-02-03T13:37:11Z
has_accepted_license: '1'
intvolume: ' 25'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 89-100
pmid: 1
project:
- _id: 2649B4DE-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '771402'
name: Epidemics in ant societies on a chip
publication: Ecology Letters
publication_identifier:
eissn:
- 1461-0248
issn:
- 1461-023X
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '13061'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Early queen infection shapes developmental dynamics and induces long-term disease
protection in incipient ant colonies
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 25
year: '2022'
...
---
_id: '10335'
abstract:
- lang: eng
text: "Van der Holst and Pendavingh introduced a graph parameter σ, which coincides
with the more famous Colin de Verdière graph parameter μ for small values. However,
the definition of a is much more geometric/topological directly reflecting embeddability
properties of the graph. They proved μ(G) ≤ σ(G) + 2 and conjectured σ(G) ≤ σ(G)
for any graph G. We confirm this conjecture. As far as we know, this is the first
topological upper bound on σ(G) which is, in general, tight.\r\nEquality between
μ and σ does not hold in general as van der Holst and Pendavingh showed that there
is a graph G with μ(G) ≤ 18 and σ(G) ≥ 20. We show that the gap appears at much
smaller values, namely, we exhibit a graph H for which μ(H) ≥ 7 and σ(H) ≥ 8.
We also prove that, in general, the gap can be large: The incidence graphs Hq
of finite projective planes of order q satisfy μ(Hq) ∈ O(q3/2) and σ(Hq) ≥ q2."
acknowledgement: 'V. K. gratefully acknowledges the support of Austrian Science Fund
(FWF): P 30902-N35. This work was done mostly while he was employed at the University
of Innsbruck. During the early stage of this research, V. K. was partially supported
by Charles University project GAUK 926416. M. T. is supported by the grant no. 19-04113Y
of the Czech Science Foundation(GA ˇCR) and partially supported by Charles University
project UNCE/SCI/004.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Vojtech
full_name: Kaluza, Vojtech
id: 21AE5134-9EAC-11EA-BEA2-D7BD3DDC885E
last_name: Kaluza
orcid: 0000-0002-2512-8698
- first_name: Martin
full_name: Tancer, Martin
id: 38AC689C-F248-11E8-B48F-1D18A9856A87
last_name: Tancer
orcid: 0000-0002-1191-6714
citation:
ama: Kaluza V, Tancer M. Even maps, the Colin de Verdière number and representations
of graphs. Combinatorica. 2022;42:1317-1345. doi:10.1007/s00493-021-4443-7
apa: Kaluza, V., & Tancer, M. (2022). Even maps, the Colin de Verdière number
and representations of graphs. Combinatorica. Springer Nature. https://doi.org/10.1007/s00493-021-4443-7
chicago: Kaluza, Vojtech, and Martin Tancer. “Even Maps, the Colin de Verdière Number
and Representations of Graphs.” Combinatorica. Springer Nature, 2022. https://doi.org/10.1007/s00493-021-4443-7.
ieee: V. Kaluza and M. Tancer, “Even maps, the Colin de Verdière number and representations
of graphs,” Combinatorica, vol. 42. Springer Nature, pp. 1317–1345, 2022.
ista: Kaluza V, Tancer M. 2022. Even maps, the Colin de Verdière number and representations
of graphs. Combinatorica. 42, 1317–1345.
mla: Kaluza, Vojtech, and Martin Tancer. “Even Maps, the Colin de Verdière Number
and Representations of Graphs.” Combinatorica, vol. 42, Springer Nature,
2022, pp. 1317–45, doi:10.1007/s00493-021-4443-7.
short: V. Kaluza, M. Tancer, Combinatorica 42 (2022) 1317–1345.
corr_author: '1'
date_created: 2021-11-25T13:49:16Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2024-10-09T20:53:51Z
day: '01'
ddc:
- '514'
- '516'
department:
- _id: UlWa
doi: 10.1007/s00493-021-4443-7
external_id:
arxiv:
- '1907.05055'
isi:
- '000798210100003'
intvolume: ' 42'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1907.05055'
month: '12'
oa: 1
oa_version: Preprint
page: 1317-1345
publication: Combinatorica
publication_identifier:
issn:
- 0209-9683
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Even maps, the Colin de Verdière number and representations of graphs
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 42
year: '2022'
...
---
_id: '10364'
abstract:
- lang: eng
text: 'This paper characterizes the latency of the simplified successive-cancellation
(SSC) decoding scheme for polar codes under hardware resource constraints. In
particular, when the number of processing elements P that can perform SSC decoding
operations in parallel is limited, as is the case in practice, the latency of
SSC decoding is O(N1-1/μ + N/P log2 log2 N/P), where N is the block length of
the code and μ is the scaling exponent of the channel. Three direct consequences
of this bound are presented. First, in a fully-parallel implementation where P
= N/2, the latency of SSC decoding is O(N1-1/μ), which is sublinear in the block
length. This recovers a result from our earlier work. Second, in a fully-serial
implementation where P = 1, the latency of SSC decoding scales as O(N log2 log2
N). The multiplicative constant is also calculated: we show that the latency of
SSC decoding when P = 1 is given by (2 + o(1))N log2 log2 N. Third, in a semi-parallel
implementation, the smallest P that gives the same latency as that of the fully-parallel
implementation is P = N1/μ. The tightness of our bound on SSC decoding latency
and the applicability of the foregoing results is validated through extensive
simulations.'
acknowledgement: "S. A. Hashemi is supported by a Postdoctoral Fellowship from the
Natural Sciences and\r\nEngineering Research Council of Canada (NSERC) and by Huawei.
M. Mondelli is partially\r\nsupported by the 2019 Lopez-Loreta Prize. A. Fazeli
and A. Vardy were supported in part by\r\nthe National Science Foundation under
Grant CCF-1764104."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Seyyed Ali
full_name: Hashemi, Seyyed Ali
last_name: Hashemi
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Arman
full_name: Fazeli, Arman
last_name: Fazeli
- first_name: Alexander
full_name: Vardy, Alexander
last_name: Vardy
- first_name: John
full_name: Cioffi, John
last_name: Cioffi
- first_name: Andrea
full_name: Goldsmith, Andrea
last_name: Goldsmith
citation:
ama: Hashemi SA, Mondelli M, Fazeli A, Vardy A, Cioffi J, Goldsmith A. Parallelism
versus latency in simplified successive-cancellation decoding of polar codes.
IEEE Transactions on Wireless Communications. 2022;21(6):3909-3920. doi:10.1109/TWC.2021.3125626
apa: Hashemi, S. A., Mondelli, M., Fazeli, A., Vardy, A., Cioffi, J., & Goldsmith,
A. (2022). Parallelism versus latency in simplified successive-cancellation decoding
of polar codes. IEEE Transactions on Wireless Communications. Institute
of Electrical and Electronics Engineers. https://doi.org/10.1109/TWC.2021.3125626
chicago: Hashemi, Seyyed Ali, Marco Mondelli, Arman Fazeli, Alexander Vardy, John
Cioffi, and Andrea Goldsmith. “Parallelism versus Latency in Simplified Successive-Cancellation
Decoding of Polar Codes.” IEEE Transactions on Wireless Communications.
Institute of Electrical and Electronics Engineers, 2022. https://doi.org/10.1109/TWC.2021.3125626.
ieee: S. A. Hashemi, M. Mondelli, A. Fazeli, A. Vardy, J. Cioffi, and A. Goldsmith,
“Parallelism versus latency in simplified successive-cancellation decoding of
polar codes,” IEEE Transactions on Wireless Communications, vol. 21, no.
6. Institute of Electrical and Electronics Engineers, pp. 3909–3920, 2022.
ista: Hashemi SA, Mondelli M, Fazeli A, Vardy A, Cioffi J, Goldsmith A. 2022. Parallelism
versus latency in simplified successive-cancellation decoding of polar codes.
IEEE Transactions on Wireless Communications. 21(6), 3909–3920.
mla: Hashemi, Seyyed Ali, et al. “Parallelism versus Latency in Simplified Successive-Cancellation
Decoding of Polar Codes.” IEEE Transactions on Wireless Communications,
vol. 21, no. 6, Institute of Electrical and Electronics Engineers, 2022, pp. 3909–20,
doi:10.1109/TWC.2021.3125626.
short: S.A. Hashemi, M. Mondelli, A. Fazeli, A. Vardy, J. Cioffi, A. Goldsmith,
IEEE Transactions on Wireless Communications 21 (2022) 3909–3920.
date_created: 2021-11-28T23:01:29Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2025-04-15T07:50:11Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/TWC.2021.3125626
external_id:
arxiv:
- '2012.13378'
isi:
- '000809406400028'
intvolume: ' 21'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2012.13378
month: '06'
oa: 1
oa_version: Preprint
page: 3909-3920
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: IEEE Transactions on Wireless Communications
publication_identifier:
eissn:
- 1558-2248
issn:
- 1536-1276
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
related_material:
record:
- id: '10053'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Parallelism versus latency in simplified successive-cancellation decoding of
polar codes
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 21
year: '2022'
...
---
_id: '10413'
abstract:
- lang: eng
text: Motivated by the recent introduction of the intrinsic semilattice entropy,
we study generalized quasi-metric semilattices and their categories. We investigate
the relationship between these objects and generalized semivaluations, extending
Nakamura and Schellekens' approach. Finally, we use this correspondence to compare
the intrinsic semilattice entropy and the semigroup entropy induced in particular
situations, like sets, torsion abelian groups and vector spaces.
acknowledgement: Dedicated to the memory of Hans-Peter Künzi.
article_number: '107916'
article_processing_charge: No
article_type: original
author:
- first_name: Dikran
full_name: Dikranjan, Dikran
last_name: Dikranjan
- first_name: Anna
full_name: Giordano Bruno, Anna
last_name: Giordano Bruno
- first_name: Hans Peter
full_name: Künzi, Hans Peter
last_name: Künzi
- first_name: Nicolò
full_name: Zava, Nicolò
id: c8b3499c-7a77-11eb-b046-aa368cbbf2ad
last_name: Zava
orcid: 0000-0001-8686-1888
- first_name: Daniele
full_name: Toller, Daniele
last_name: Toller
citation:
ama: Dikranjan D, Giordano Bruno A, Künzi HP, Zava N, Toller D. Generalized quasi-metric
semilattices. Topology and its Applications. 2022;309. doi:10.1016/j.topol.2021.107916
apa: Dikranjan, D., Giordano Bruno, A., Künzi, H. P., Zava, N., & Toller, D.
(2022). Generalized quasi-metric semilattices. Topology and Its Applications.
Elsevier. https://doi.org/10.1016/j.topol.2021.107916
chicago: Dikranjan, Dikran, Anna Giordano Bruno, Hans Peter Künzi, Nicolò Zava,
and Daniele Toller. “Generalized Quasi-Metric Semilattices.” Topology and Its
Applications. Elsevier, 2022. https://doi.org/10.1016/j.topol.2021.107916.
ieee: D. Dikranjan, A. Giordano Bruno, H. P. Künzi, N. Zava, and D. Toller, “Generalized
quasi-metric semilattices,” Topology and its Applications, vol. 309. Elsevier,
2022.
ista: Dikranjan D, Giordano Bruno A, Künzi HP, Zava N, Toller D. 2022. Generalized
quasi-metric semilattices. Topology and its Applications. 309, 107916.
mla: Dikranjan, Dikran, et al. “Generalized Quasi-Metric Semilattices.” Topology
and Its Applications, vol. 309, 107916, Elsevier, 2022, doi:10.1016/j.topol.2021.107916.
short: D. Dikranjan, A. Giordano Bruno, H.P. Künzi, N. Zava, D. Toller, Topology
and Its Applications 309 (2022).
corr_author: '1'
date_created: 2021-12-05T23:01:44Z
date_published: 2022-03-15T00:00:00Z
date_updated: 2024-10-09T21:01:16Z
day: '15'
department:
- _id: HeEd
doi: 10.1016/j.topol.2021.107916
external_id:
isi:
- '000791838800012'
intvolume: ' 309'
isi: 1
language:
- iso: eng
month: '03'
oa_version: None
publication: Topology and its Applications
publication_identifier:
issn:
- 0166-8641
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generalized quasi-metric semilattices
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 309
year: '2022'
...