---
_id: '9951'
abstract:
- lang: eng
  text: "There has recently been a surge of interest in the computational and complexity
    properties of the population model, which assumes n anonymous, computationally-bounded
    nodes, interacting at random, with the goal of jointly computing global predicates.
    Significant work has gone towards investigating majority or consensus dynamics
    in this model: that is, assuming that every node is initially in one of two states
    X or Y, determine which state had higher initial count.\r\n\r\nIn this paper,
    we consider a natural generalization of majority/consensus, which we call comparison
    : in its simplest formulation, we are given two baseline states, X and Y, present
    in any initial configuration in fixed, but possibly small counts. One of these
    states has higher count than the other: we will assume |X_0| > C |Y_0| for some
    constant C > 1. The challenge is to design a protocol by which nodes can quickly
    and reliably decide on which of the baseline states X_0 and Y_0 has higher initial
    count. We begin by analyzing a simple and general dynamics solving the above comparison
    problem, which uses O( log n ) states per node, and converges in O(log n) (parallel)
    time, with high probability, to a state where the whole population votes on opinions
    X or Y at rates proportional to the initial concentrations of |X_0| vs. |Y_0|.
    We then describe how this procedure can be bootstrapped to solve comparison, i.e.
    have every node in the population reach the \"correct'' decision, with probability
    1 - o(1), at the cost of O (log log n) additional states. Further, we prove that
    this dynamics is self-stabilizing, in the sense that it converges to the correct
    decision from arbitrary initial states, and leak-robust, in the sense that it
    can withstand spurious faulty reactions, which are known to occur in practical
    implementations of population protocols. Our analysis is based on a new martingale
    concentration result relating the discrete-time evolution of a population protocol
    to its expected (steady-state) analysis, which should be a useful tool when analyzing
    opinion dynamics and epidemic dissemination in the population model."
acknowledgement: We would like to thank Rati Gelashvili for very useful discussions,
  and the PODC anonymous reviewers for their careful reading of our paper, and for
  their useful remarks. This work is partially supported by the Polish National Science
  Center (NCN) grant UMO2017/25/B/ST6/02010.
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Martin
  full_name: Töpfer, Martin
  id: 4B865388-F248-11E8-B48F-1D18A9856A87
  last_name: Töpfer
- first_name: Przemysław
  full_name: Uznański, Przemysław
  last_name: Uznański
citation:
  ama: 'Alistarh D-A, Töpfer M, Uznański P. Comparison dynamics in population protocols.
    In: <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>.
    Association for Computing Machinery; 2021:55-65. doi:<a href="https://doi.org/10.1145/3465084.3467915">10.1145/3465084.3467915</a>'
  apa: 'Alistarh, D.-A., Töpfer, M., &#38; Uznański, P. (2021). Comparison dynamics
    in population protocols. In <i>Proceedings of the 2021 ACM Symposium on Principles
    of Distributed Computing</i> (pp. 55–65). Virtual, Italy: Association for Computing
    Machinery. <a href="https://doi.org/10.1145/3465084.3467915">https://doi.org/10.1145/3465084.3467915</a>'
  chicago: Alistarh, Dan-Adrian, Martin Töpfer, and Przemysław Uznański. “Comparison
    Dynamics in Population Protocols.” In <i>Proceedings of the 2021 ACM Symposium
    on Principles of Distributed Computing</i>, 55–65. Association for Computing Machinery,
    2021. <a href="https://doi.org/10.1145/3465084.3467915">https://doi.org/10.1145/3465084.3467915</a>.
  ieee: D.-A. Alistarh, M. Töpfer, and P. Uznański, “Comparison dynamics in population
    protocols,” in <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed
    Computing</i>, Virtual, Italy, 2021, pp. 55–65.
  ista: 'Alistarh D-A, Töpfer M, Uznański P. 2021. Comparison dynamics in population
    protocols. Proceedings of the 2021 ACM Symposium on Principles of Distributed
    Computing. PODC: Symposium on Principles of Distributed Computing, 55–65.'
  mla: Alistarh, Dan-Adrian, et al. “Comparison Dynamics in Population Protocols.”
    <i>Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing</i>,
    Association for Computing Machinery, 2021, pp. 55–65, doi:<a href="https://doi.org/10.1145/3465084.3467915">10.1145/3465084.3467915</a>.
  short: D.-A. Alistarh, M. Töpfer, P. Uznański, in:, Proceedings of the 2021 ACM
    Symposium on Principles of Distributed Computing, Association for Computing Machinery,
    2021, pp. 55–65.
conference:
  end_date: 2021-07-30
  location: Virtual, Italy
  name: 'PODC: Symposium on Principles of Distributed Computing'
  start_date: 2021-07-26
date_created: 2021-08-22T22:01:20Z
date_published: 2021-07-21T00:00:00Z
date_updated: 2023-08-11T10:56:04Z
day: '21'
department:
- _id: DaAl
doi: 10.1145/3465084.3467915
external_id:
  isi:
  - '000744439800005'
fulldoi: https://doi.org/10.1145/3465084.3467915
isi: 1
language:
- iso: eng
month: '07'
oa_version: None
page: 55-65
publication: Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing
publication_identifier:
  isbn:
  - '9781450385480'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Comparison dynamics in population protocols
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '9952'
abstract:
- lang: eng
  text: Proper control of division orientation and symmetry, largely determined by
    spindle positioning, is essential to development and homeostasis. Spindle positioning
    has been extensively studied in cells dividing in two-dimensional (2D) environments
    and in epithelial tissues, where proteins such as NuMA (also known as NUMA1) orient
    division along the interphase long axis of the cell. However, little is known
    about how cells control spindle positioning in three-dimensional (3D) environments,
    such as early mammalian embryos and a variety of adult tissues. Here, we use mouse
    embryonic stem cells (ESCs), which grow in 3D colonies, as a model to investigate
    division in 3D. We observe that, at the periphery of 3D colonies, ESCs display
    high spindle mobility and divide asymmetrically. Our data suggest that enhanced
    spindle movements are due to unequal distribution of the cell–cell junction protein
    E-cadherin between future daughter cells. Interestingly, when cells progress towards
    differentiation, division becomes more symmetric, with more elongated shapes in
    metaphase and enhanced cortical NuMA recruitment in anaphase. Altogether, this
    study suggests that in 3D contexts, the geometry of the cell and its contacts
    with neighbors control division orientation and symmetry.
acknowledgement: We would like to thank the entire Paluch and Baum laboratories at
  the MRC-LMCB and the Chalut lab at the Cambridge SCI for discussions and feedback
  throughout the project, and the MRC-LMCB microscopy platform, in particular Andrew
  Vaughan, for technical support.
article_number: jcs255018
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Agathe
  full_name: Chaigne, Agathe
  last_name: Chaigne
- first_name: Matthew B.
  full_name: Smith, Matthew B.
  last_name: Smith
- first_name: R. L.
  full_name: Cavestany, R. L.
  last_name: Cavestany
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Kevin J.
  full_name: Chalut, Kevin J.
  last_name: Chalut
- first_name: Ewa K.
  full_name: Paluch, Ewa K.
  last_name: Paluch
citation:
  ama: Chaigne A, Smith MB, Cavestany RL, Hannezo EB, Chalut KJ, Paluch EK. Three-dimensional
    geometry controls division symmetry in stem cell colonies. <i>Journal of Cell
    Science</i>. 2021;134(14). doi:<a href="https://doi.org/10.1242/jcs.255018">10.1242/jcs.255018</a>
  apa: Chaigne, A., Smith, M. B., Cavestany, R. L., Hannezo, E. B., Chalut, K. J.,
    &#38; Paluch, E. K. (2021). Three-dimensional geometry controls division symmetry
    in stem cell colonies. <i>Journal of Cell Science</i>. The Company of Biologists.
    <a href="https://doi.org/10.1242/jcs.255018">https://doi.org/10.1242/jcs.255018</a>
  chicago: Chaigne, Agathe, Matthew B. Smith, R. L. Cavestany, Edouard B Hannezo,
    Kevin J. Chalut, and Ewa K. Paluch. “Three-Dimensional Geometry Controls Division
    Symmetry in Stem Cell Colonies.” <i>Journal of Cell Science</i>. The Company of
    Biologists, 2021. <a href="https://doi.org/10.1242/jcs.255018">https://doi.org/10.1242/jcs.255018</a>.
  ieee: A. Chaigne, M. B. Smith, R. L. Cavestany, E. B. Hannezo, K. J. Chalut, and
    E. K. Paluch, “Three-dimensional geometry controls division symmetry in stem cell
    colonies,” <i>Journal of Cell Science</i>, vol. 134, no. 14. The Company of Biologists,
    2021.
  ista: Chaigne A, Smith MB, Cavestany RL, Hannezo EB, Chalut KJ, Paluch EK. 2021.
    Three-dimensional geometry controls division symmetry in stem cell colonies. Journal
    of Cell Science. 134(14), jcs255018.
  mla: Chaigne, Agathe, et al. “Three-Dimensional Geometry Controls Division Symmetry
    in Stem Cell Colonies.” <i>Journal of Cell Science</i>, vol. 134, no. 14, jcs255018,
    The Company of Biologists, 2021, doi:<a href="https://doi.org/10.1242/jcs.255018">10.1242/jcs.255018</a>.
  short: A. Chaigne, M.B. Smith, R.L. Cavestany, E.B. Hannezo, K.J. Chalut, E.K. Paluch,
    Journal of Cell Science 134 (2021).
date_created: 2021-08-22T22:01:20Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2025-07-10T12:02:07Z
day: '01'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1242/jcs.255018
external_id:
  isi:
  - '000681395800008'
file:
- access_level: open_access
  checksum: f086f9d7cb63b2474c01921cb060c513
  content_type: application/pdf
  creator: asandaue
  date_created: 2021-08-23T07:32:20Z
  date_updated: 2021-08-23T07:32:20Z
  file_id: '9954'
  file_name: 2021_JournalOfCellScience_Chaigne.pdf
  file_size: 8651724
  relation: main_file
  success: 1
file_date_updated: 2021-08-23T07:32:20Z
fulldoi: https://doi.org/10.1242/jcs.255018
has_accepted_license: '1'
intvolume: '       134'
isi: 1
issue: '14'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Journal of Cell Science
publication_identifier:
  eissn:
  - 1477-9137
  issn:
  - 0021-9533
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Three-dimensional geometry controls division symmetry in stem cell colonies
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 134
year: '2021'
...
---
_id: '9953'
abstract:
- lang: eng
  text: Chronic psychological stress is one of the most important triggers and environmental
    risk factors for neuropsychiatric disorders. Chronic stress can influence all
    organs via the secretion of stress hormones, including glucocorticoids by the
    adrenal glands, which coordinate the stress response across the body. In the brain,
    glucocorticoid receptors (GR) are expressed by various cell types including microglia,
    which are its resident immune cells regulating stress-induced inflammatory processes.
    To study the roles of microglial GR under normal homeostatic conditions and following
    chronic stress, we generated a mouse model in which the GR gene is depleted in
    microglia specifically at adulthood to prevent developmental confounds. We first
    confirmed that microglia were depleted in GR in our model in males and females
    among the cingulate cortex and the hippocampus, both stress-sensitive brain regions.
    Then, cohorts of microglial-GR depleted and wild-type (WT) adult female mice were
    housed for 3 weeks in a standard or stressful condition, using a chronic unpredictable
    mild stress (CUMS) paradigm. CUMS induced stress-related behavior in both microglial-GR
    depleted and WT animals as demonstrated by a decrease of both saccharine preference
    and progressive ratio breakpoint. Nevertheless, the hippocampal microglial and
    neural mechanisms underlying the adaptation to stress occurred differently between
    the two genotypes. Upon CUMS exposure, microglial morphology was altered in the
    WT controls, without any apparent effect in microglial-GR depleted mice. Furthermore,
    in the standard environment condition, GR depleted-microglia showed increased
    expression of pro-inflammatory genes, and genes involved in microglial homeostatic
    functions (such as Trem2, Cx3cr1 and Mertk). On the contrary, in CUMS condition,
    GR depleted-microglia showed reduced expression levels of pro-inflammatory genes
    and increased neuroprotective as well as anti-inflammatory genes compared to WT-microglia.
    Moreover, in microglial-GR depleted mice, but not in WT mice, CUMS led to a significant
    reduction of CA1 long-term potentiation and paired-pulse ratio. Lastly, differences
    in adult hippocampal neurogenesis were observed between the genotypes during normal
    homeostatic conditions, with microglial-GR deficiency increasing the formation
    of newborn neurons in the dentate gyrus subgranular zone independently from stress
    exposure. Together, these findings indicate that, although the deletion of microglial
    GR did not prevent the animal’s ability to respond to stress, it contributed to
    modulating hippocampal functions in both standard and stressful conditions, notably
    by shaping the microglial response to chronic stress.
acknowledgement: We acknowledge that Université Laval stands on the traditional and
  unceded land of the Huron-Wendat peoples; and that the University of Victoria exists
  on the territory of the Lekwungen peoples and that the Songhees, Esquimalt and WSÁNEÆ
  peoples have relationships to this land. We thank Emmanuel Planel for the access
  to the epifluorescence microscope and Julie-Christine Lévesque at the Bioimaging
  Platform of CRCHU de Québec-Université Laval for technical assistance. We also thank
  the Centre for Advanced Materials and Related Technology for the access to the confocal
  microscope with Airyscan. K.P. was supported by a doctoral scholarship from Fonds
  de Recherche du Québec – Santé (FRQS), an excellence award from Fondation du CHU
  de Québec, as well as from Centre Thématique de Recherche en Neurosciences and from
  Fondation Famille-Choquette. K.B. was supported by excellence scholarships from
  Université Laval and Fondation du CHU de Québec. S.G. is supported by FIRC-AIRC
  fellowship for Italy 22329/2018 and by Pilot ARISLA NKINALS 2019. C.W.H. and J.C.S.
  were supported by postdoctoral fellowships from FRQS. This study was funded by a
  Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery grant
  (RGPIN-2014-05308) awarded to M.E.T., by ERANET neuron 2017 MicroSynDep to M.E.T.
  and I.B., and by the Italian Ministry of Health, grant RF-2018-12367249 to I.B,
  by PRIN 2017, AIRC 2019 and Ministero della Salute RF2018 to C.L. M.E.T. is a Tier
  II Canada Research Chair in Neurobiology of Aging and Cognition.
article_processing_charge: No
article_type: original
author:
- first_name: Katherine
  full_name: Picard, Katherine
  last_name: Picard
- first_name: Kanchan
  full_name: Bisht, Kanchan
  last_name: Bisht
- first_name: Silvia
  full_name: Poggini, Silvia
  last_name: Poggini
- first_name: Stefano
  full_name: Garofalo, Stefano
  last_name: Garofalo
- first_name: Maria Teresa
  full_name: Golia, Maria Teresa
  last_name: Golia
- first_name: Bernadette
  full_name: Basilico, Bernadette
  id: 36035796-5ACA-11E9-A75E-7AF2E5697425
  last_name: Basilico
  orcid: 0000-0003-1843-3173
- first_name: Fatima
  full_name: Abdallah, Fatima
  last_name: Abdallah
- first_name: Naomi
  full_name: Ciano Albanese, Naomi
  last_name: Ciano Albanese
- first_name: Irmgard
  full_name: Amrein, Irmgard
  last_name: Amrein
- first_name: Nathalie
  full_name: Vernoux, Nathalie
  last_name: Vernoux
- first_name: Kaushik
  full_name: Sharma, Kaushik
  last_name: Sharma
- first_name: Chin Wai
  full_name: Hui, Chin Wai
  last_name: Hui
- first_name: Julie
  full_name: C. Savage, Julie
  last_name: C. Savage
- first_name: Cristina
  full_name: Limatola, Cristina
  last_name: Limatola
- first_name: Davide
  full_name: Ragozzino, Davide
  last_name: Ragozzino
- first_name: Laura
  full_name: Maggi, Laura
  last_name: Maggi
- first_name: Igor
  full_name: Branchi, Igor
  last_name: Branchi
- first_name: Marie Ève
  full_name: Tremblay, Marie Ève
  last_name: Tremblay
citation:
  ama: Picard K, Bisht K, Poggini S, et al. Microglial-glucocorticoid receptor depletion
    alters the response of hippocampal microglia and neurons in a chronic unpredictable
    mild stress paradigm in female mice. <i>Brain, Behavior, and Immunity</i>. 2021;97:423-439.
    doi:<a href="https://doi.org/10.1016/j.bbi.2021.07.022">10.1016/j.bbi.2021.07.022</a>
  apa: Picard, K., Bisht, K., Poggini, S., Garofalo, S., Golia, M. T., Basilico, B.,
    … Tremblay, M. È. (2021). Microglial-glucocorticoid receptor depletion alters
    the response of hippocampal microglia and neurons in a chronic unpredictable mild
    stress paradigm in female mice. <i>Brain, Behavior, and Immunity</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.bbi.2021.07.022">https://doi.org/10.1016/j.bbi.2021.07.022</a>
  chicago: Picard, Katherine, Kanchan Bisht, Silvia Poggini, Stefano Garofalo, Maria
    Teresa Golia, Bernadette Basilico, Fatima Abdallah, et al. “Microglial-Glucocorticoid
    Receptor Depletion Alters the Response of Hippocampal Microglia and Neurons in
    a Chronic Unpredictable Mild Stress Paradigm in Female Mice.” <i>Brain, Behavior,
    and Immunity</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.bbi.2021.07.022">https://doi.org/10.1016/j.bbi.2021.07.022</a>.
  ieee: K. Picard <i>et al.</i>, “Microglial-glucocorticoid receptor depletion alters
    the response of hippocampal microglia and neurons in a chronic unpredictable mild
    stress paradigm in female mice,” <i>Brain, Behavior, and Immunity</i>, vol. 97.
    Elsevier, pp. 423–439, 2021.
  ista: Picard K, Bisht K, Poggini S, Garofalo S, Golia MT, Basilico B, Abdallah F,
    Ciano Albanese N, Amrein I, Vernoux N, Sharma K, Hui CW, C. Savage J, Limatola
    C, Ragozzino D, Maggi L, Branchi I, Tremblay MÈ. 2021. Microglial-glucocorticoid
    receptor depletion alters the response of hippocampal microglia and neurons in
    a chronic unpredictable mild stress paradigm in female mice. Brain, Behavior,
    and Immunity. 97, 423–439.
  mla: Picard, Katherine, et al. “Microglial-Glucocorticoid Receptor Depletion Alters
    the Response of Hippocampal Microglia and Neurons in a Chronic Unpredictable Mild
    Stress Paradigm in Female Mice.” <i>Brain, Behavior, and Immunity</i>, vol. 97,
    Elsevier, 2021, pp. 423–39, doi:<a href="https://doi.org/10.1016/j.bbi.2021.07.022">10.1016/j.bbi.2021.07.022</a>.
  short: K. Picard, K. Bisht, S. Poggini, S. Garofalo, M.T. Golia, B. Basilico, F.
    Abdallah, N. Ciano Albanese, I. Amrein, N. Vernoux, K. Sharma, C.W. Hui, J. C.
    Savage, C. Limatola, D. Ragozzino, L. Maggi, I. Branchi, M.È. Tremblay, Brain,
    Behavior, and Immunity 97 (2021) 423–439.
date_created: 2021-08-22T22:01:21Z
date_published: 2021-10-01T00:00:00Z
date_updated: 2023-10-03T09:49:18Z
day: '01'
department:
- _id: GaNo
doi: 10.1016/j.bbi.2021.07.022
external_id:
  isi:
  - '000702878400007'
  pmid:
  - '34343616'
fulldoi: https://doi.org/10.1016/j.bbi.2021.07.022
intvolume: '        97'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.zora.uzh.ch/id/eprint/208855/1/ZORA208855.pdf
month: '10'
oa: 1
oa_version: Submitted Version
page: 423-439
pmid: 1
publication: Brain, Behavior, and Immunity
publication_identifier:
  issn:
  - 0889-1591
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microglial-glucocorticoid receptor depletion alters the response of hippocampal
  microglia and neurons in a chronic unpredictable mild stress paradigm in female
  mice
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 97
year: '2021'
...
---
_id: '9957'
abstract:
- lang: eng
  text: The reflectance field of a face describes the reflectance properties responsible
    for complex lighting effects including diffuse, specular, inter-reflection and
    self shadowing. Most existing methods for estimating the face reflectance from
    a monocular image assume faces to be diffuse with very few approaches adding a
    specular component. This still leaves out important perceptual aspects of reflectance
    as higher-order global illumination effects and self-shadowing are not modeled.
    We present a new neural representation for face reflectance where we can estimate
    all components of the reflectance responsible for the final appearance from a
    single monocular image. Instead of modeling each component of the reflectance
    separately using parametric models, our neural representation allows us to generate
    a basis set of faces in a geometric deformation-invariant space, parameterized
    by the input light direction, viewpoint and face geometry. We learn to reconstruct
    this reflectance field of a face just from a monocular image, which can be used
    to render the face from any viewpoint in any light condition. Our method is trained
    on a light-stage training dataset, which captures 300 people illuminated with
    150 light conditions from 8 viewpoints. We show that our method outperforms existing
    monocular reflectance reconstruction methods, in terms of photorealism due to
    better capturing of physical premitives, such as sub-surface scattering, specularities,
    self-shadows and other higher-order effects.
acknowledgement: "We thank Tarun Yenamandra and Duarte David for helping us with the
  comparisons. This work was supported by the\r\nERC Consolidator Grant 4DReply (770784).
  We also acknowledge support from InterDigital."
article_processing_charge: No
arxiv: 1
author:
- first_name: Mallikarjun
  full_name: B R, Mallikarjun
  last_name: B R
- first_name: Ayush
  full_name: Tewari, Ayush
  last_name: Tewari
- first_name: Tae-Hyun
  full_name: Oh, Tae-Hyun
  last_name: Oh
- first_name: Tim
  full_name: Weyrich, Tim
  last_name: Weyrich
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Hans-Peter
  full_name: Seidel, Hans-Peter
  last_name: Seidel
- first_name: Hanspeter
  full_name: Pfister, Hanspeter
  last_name: Pfister
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Mohamed
  full_name: Elgharib, Mohamed
  last_name: Elgharib
- first_name: Christian
  full_name: Theobalt, Christian
  last_name: Theobalt
citation:
  ama: 'B R M, Tewari A, Oh T-H, et al. Monocular reconstruction of neural face reflectance
    fields. In: <i>Proceedings of the IEEE Computer Society Conference on Computer
    Vision and Pattern Recognition</i>. IEEE; 2021:4791-4800. doi:<a href="https://doi.org/10.1109/CVPR46437.2021.00476">10.1109/CVPR46437.2021.00476</a>'
  apa: 'B R, M., Tewari, A., Oh, T.-H., Weyrich, T., Bickel, B., Seidel, H.-P., …
    Theobalt, C. (2021). Monocular reconstruction of neural face reflectance fields.
    In <i>Proceedings of the IEEE Computer Society Conference on Computer Vision and
    Pattern Recognition</i> (pp. 4791–4800). Nashville, TN, United States; Virtual:
    IEEE. <a href="https://doi.org/10.1109/CVPR46437.2021.00476">https://doi.org/10.1109/CVPR46437.2021.00476</a>'
  chicago: B R, Mallikarjun, Ayush Tewari, Tae-Hyun Oh, Tim Weyrich, Bernd Bickel,
    Hans-Peter Seidel, Hanspeter Pfister, Wojciech Matusik, Mohamed Elgharib, and
    Christian Theobalt. “Monocular Reconstruction of Neural Face Reflectance Fields.”
    In <i>Proceedings of the IEEE Computer Society Conference on Computer Vision and
    Pattern Recognition</i>, 4791–4800. IEEE, 2021. <a href="https://doi.org/10.1109/CVPR46437.2021.00476">https://doi.org/10.1109/CVPR46437.2021.00476</a>.
  ieee: M. B R <i>et al.</i>, “Monocular reconstruction of neural face reflectance
    fields,” in <i>Proceedings of the IEEE Computer Society Conference on Computer
    Vision and Pattern Recognition</i>, Nashville, TN, United States; Virtual, 2021,
    pp. 4791–4800.
  ista: 'B R M, Tewari A, Oh T-H, Weyrich T, Bickel B, Seidel H-P, Pfister H, Matusik
    W, Elgharib M, Theobalt C. 2021. Monocular reconstruction of neural face reflectance
    fields. Proceedings of the IEEE Computer Society Conference on Computer Vision
    and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition,
    4791–4800.'
  mla: B R, Mallikarjun, et al. “Monocular Reconstruction of Neural Face Reflectance
    Fields.” <i>Proceedings of the IEEE Computer Society Conference on Computer Vision
    and Pattern Recognition</i>, IEEE, 2021, pp. 4791–800, doi:<a href="https://doi.org/10.1109/CVPR46437.2021.00476">10.1109/CVPR46437.2021.00476</a>.
  short: M. B R, A. Tewari, T.-H. Oh, T. Weyrich, B. Bickel, H.-P. Seidel, H. Pfister,
    W. Matusik, M. Elgharib, C. Theobalt, in:, Proceedings of the IEEE Computer Society
    Conference on Computer Vision and Pattern Recognition, IEEE, 2021, pp. 4791–4800.
conference:
  end_date: 2021-06-25
  location: Nashville, TN, United States; Virtual
  name: 'CVPR: Conference on Computer Vision and Pattern Recognition'
  start_date: 2021-06-20
date_created: 2021-08-24T06:03:00Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2023-08-11T11:08:35Z
day: '01'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1109/CVPR46437.2021.00476
external_id:
  arxiv:
  - '2008.10247'
  isi:
  - '000739917304096'
file:
- access_level: open_access
  checksum: 961db0bde76dd87cf833930080bb9f38
  content_type: application/pdf
  creator: bbickel
  date_created: 2021-08-24T06:02:15Z
  date_updated: 2021-08-24T06:02:15Z
  file_id: '9958'
  file_name: R_Monocular_Reconstruction_of_Neural_Face_Reflectance_Fields_CVPR_2021_paper[1].pdf
  file_size: 4746649
  relation: main_file
file_date_updated: 2021-08-24T06:02:15Z
fulldoi: https://doi.org/10.1109/CVPR46437.2021.00476
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Preprint
page: 4791-4800
publication: Proceedings of the IEEE Computer Society Conference on Computer Vision
  and Pattern Recognition
publication_identifier:
  isbn:
  - 978-166544509-2
  issn:
  - 1063-6919
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Monocular reconstruction of neural face reflectance fields
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '9960'
abstract:
- lang: eng
  text: The control of many-body quantum dynamics in complex systems is a key challenge
    in the quest to reliably produce and manipulate large-scale quantum entangled
    states. Recently, quench experiments in Rydberg atom arrays [Bluvstein et al.
    Science 371, 1355 (2021)] demonstrated that coherent revivals associated with
    quantum many-body scars can be stabilized by periodic driving, generating stable
    subharmonic responses over a wide parameter regime. We analyze a simple, related
    model where these phenomena originate from spatiotemporal ordering in an effective
    Floquet unitary, corresponding to discrete time-crystalline behavior in a prethermal
    regime. Unlike conventional discrete time crystals, the subharmonic response exists
    only for Néel-like initial states, associated with quantum scars. We predict robustness
    to perturbations and identify emergent timescales that could be observed in future
    experiments. Our results suggest a route to controlling entanglement in interacting
    quantum systems by combining periodic driving with many-body scars.
acknowledgement: We thank Dmitry Abanin, Ehud Altman, Iris Cong, Sepehr Ebadi, Alex
  Keesling, Harry Levine, Ahmed Omran, Hannes Pichler, Rhine Samajdar, Guilia Semeghini,
  Tout Wang, Norman Yao, and Harry Zhou or stimulating discussions. We acknowledge
  support from the Center for Ultracold Atoms, the National Science Foundation, the
  Vannevar Bush Faculty Fellowship, the U.S. Department of Energy, the Army Research
  Office MURI, and the DARPA ONISQ program (M. L., N. M, W. W. H., D. B.); the European
  Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation
  Programme Grant Agreement No. 850899 (A. M. and M. S.); the Department of Energy
  Computational Science Graduate Fellowship under Awards No. DESC0021110 (N. M.);
  the Moore Foundation EPiQS initiative Grant No. GBMF4306, the National University
  of Singapore (NUS) Development Grant AY2019/2020 and the Stanford Institute for
  Theoretical Physics (W. W. H.); the NSF Graduate Research Fellowship Program (Grant
  No. DGE1745303) and The Fannie and John Hertz Foundation (D. B.); the Miller Institute
  for Basic Research in Science (S. C.); DOE Quantum Systems Accelerator – Contract
  No. 7568717; and DOE Programmable Quantum Simulators for Lattice Gauge Theories
  and Gauge-Gravity Correspondence – Grant No. DE-SC0021013.
article_number: '090602'
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: N.
  full_name: Maskara, N.
  last_name: Maskara
- first_name: Alexios
  full_name: Michailidis, Alexios
  id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
  last_name: Michailidis
  orcid: 0000-0002-8443-1064
- first_name: W. W.
  full_name: Ho, W. W.
  last_name: Ho
- first_name: D.
  full_name: Bluvstein, D.
  last_name: Bluvstein
- first_name: S.
  full_name: Choi, S.
  last_name: Choi
- first_name: M. D.
  full_name: Lukin, M. D.
  last_name: Lukin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: 'Maskara N, Michailidis A, Ho WW, et al. Discrete time-crystalline order enabled
    by quantum many-body scars: Entanglement steering via periodic driving. <i>Physical
    Review Letters</i>. 2021;127(9). doi:<a href="https://doi.org/10.1103/PhysRevLett.127.090602">10.1103/PhysRevLett.127.090602</a>'
  apa: 'Maskara, N., Michailidis, A., Ho, W. W., Bluvstein, D., Choi, S., Lukin, M.
    D., &#38; Serbyn, M. (2021). Discrete time-crystalline order enabled by quantum
    many-body scars: Entanglement steering via periodic driving. <i>Physical Review
    Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.127.090602">https://doi.org/10.1103/PhysRevLett.127.090602</a>'
  chicago: 'Maskara, N., Alexios Michailidis, W. W. Ho, D. Bluvstein, S. Choi, M.
    D. Lukin, and Maksym Serbyn. “Discrete Time-Crystalline Order Enabled by Quantum
    Many-Body Scars: Entanglement Steering via Periodic Driving.” <i>Physical Review
    Letters</i>. American Physical Society, 2021. <a href="https://doi.org/10.1103/PhysRevLett.127.090602">https://doi.org/10.1103/PhysRevLett.127.090602</a>.'
  ieee: 'N. Maskara <i>et al.</i>, “Discrete time-crystalline order enabled by quantum
    many-body scars: Entanglement steering via periodic driving,” <i>Physical Review
    Letters</i>, vol. 127, no. 9. American Physical Society, 2021.'
  ista: 'Maskara N, Michailidis A, Ho WW, Bluvstein D, Choi S, Lukin MD, Serbyn M.
    2021. Discrete time-crystalline order enabled by quantum many-body scars: Entanglement
    steering via periodic driving. Physical Review Letters. 127(9), 090602.'
  mla: 'Maskara, N., et al. “Discrete Time-Crystalline Order Enabled by Quantum Many-Body
    Scars: Entanglement Steering via Periodic Driving.” <i>Physical Review Letters</i>,
    vol. 127, no. 9, 090602, American Physical Society, 2021, doi:<a href="https://doi.org/10.1103/PhysRevLett.127.090602">10.1103/PhysRevLett.127.090602</a>.'
  short: N. Maskara, A. Michailidis, W.W. Ho, D. Bluvstein, S. Choi, M.D. Lukin, M.
    Serbyn, Physical Review Letters 127 (2021).
date_created: 2021-08-28T08:08:58Z
date_published: 2021-08-27T00:00:00Z
date_updated: 2025-04-14T07:52:05Z
day: '27'
department:
- _id: MaSe
doi: 10.1103/PhysRevLett.127.090602
ec_funded: 1
external_id:
  arxiv:
  - '2102.13160'
  isi:
  - '000692200100002'
fulldoi: https://doi.org/10.1103/PhysRevLett.127.090602
intvolume: '       127'
isi: 1
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2102.13160
month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Discrete time-crystalline order enabled by quantum many-body scars: Entanglement
  steering via periodic driving'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 127
year: '2021'
...
---
_id: '9961'
abstract:
- lang: eng
  text: The notion of Thouless energy plays a central role in the theory of Anderson
    localization. We investigate and compare the scaling of Thouless energy across
    the many-body localization (MBL) transition in a Floquet model. We use a combination
    of methods that are reliable on the ergodic side of the transition (e.g., spectral
    form factor) and methods that work on the MBL side (e.g., typical matrix elements
    of local operators) to obtain a complete picture of the Thouless energy behavior
    across the transition. On the ergodic side, Thouless energy decreases slowly with
    the system size, while at the transition it becomes comparable to the level spacing.
    Different probes yield consistent estimates of Thouless energy in their overlapping
    regime of applicability, giving the location of the transition point nearly free
    of finite-size drift. This work establishes a connection between different definitions
    of Thouless energy in a many-body setting and yields insights into the MBL transition
    in Floquet systems.
acknowledgement: "We thank S. Garratt for useful comments on the manuscript. This
  work was supported by the Swiss National Science Foundation (M. Sonner and D.A.A.)
  and by the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation program (M. Serbyn, Grant Agreement No. 850899, and D.A.A.,
  Grant Agreement No. 864597). Z.P. acknowledges support from EPSRC Grant No. EP/R020612/1
  and from Leverhulme Trust Research Leadership Award No. RL-2019-015. The computations
  were performed on the Baobab cluster of the University\r\nof Geneva."
article_number: L081112
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Michael
  full_name: Sonner, Michael
  last_name: Sonner
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Zlatko
  full_name: Papić, Zlatko
  last_name: Papić
- first_name: Dmitry A.
  full_name: Abanin, Dmitry A.
  last_name: Abanin
citation:
  ama: Sonner M, Serbyn M, Papić Z, Abanin DA. Thouless energy across the many-body
    localization transition in Floquet systems. <i>Physical Review B</i>. 2021;104(8).
    doi:<a href="https://doi.org/10.1103/PhysRevB.104.L081112">10.1103/PhysRevB.104.L081112</a>
  apa: Sonner, M., Serbyn, M., Papić, Z., &#38; Abanin, D. A. (2021). Thouless energy
    across the many-body localization transition in Floquet systems. <i>Physical Review
    B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.104.L081112">https://doi.org/10.1103/PhysRevB.104.L081112</a>
  chicago: Sonner, Michael, Maksym Serbyn, Zlatko Papić, and Dmitry A. Abanin. “Thouless
    Energy across the Many-Body Localization Transition in Floquet Systems.” <i>Physical
    Review B</i>. American Physical Society, 2021. <a href="https://doi.org/10.1103/PhysRevB.104.L081112">https://doi.org/10.1103/PhysRevB.104.L081112</a>.
  ieee: M. Sonner, M. Serbyn, Z. Papić, and D. A. Abanin, “Thouless energy across
    the many-body localization transition in Floquet systems,” <i>Physical Review
    B</i>, vol. 104, no. 8. American Physical Society, 2021.
  ista: Sonner M, Serbyn M, Papić Z, Abanin DA. 2021. Thouless energy across the many-body
    localization transition in Floquet systems. Physical Review B. 104(8), L081112.
  mla: Sonner, Michael, et al. “Thouless Energy across the Many-Body Localization
    Transition in Floquet Systems.” <i>Physical Review B</i>, vol. 104, no. 8, L081112,
    American Physical Society, 2021, doi:<a href="https://doi.org/10.1103/PhysRevB.104.L081112">10.1103/PhysRevB.104.L081112</a>.
  short: M. Sonner, M. Serbyn, Z. Papić, D.A. Abanin, Physical Review B 104 (2021).
date_created: 2021-08-28T16:44:55Z
date_published: 2021-08-15T00:00:00Z
date_updated: 2025-04-14T07:52:05Z
day: '15'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.104.L081112
ec_funded: 1
external_id:
  arxiv:
  - '2012.15676'
  isi:
  - '000689734500009'
fulldoi: https://doi.org/10.1103/PhysRevB.104.L081112
intvolume: '       104'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2012.15676
month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Thouless energy across the many-body localization transition in Floquet systems
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 104
year: '2021'
...
---
_id: '9969'
abstract:
- lang: eng
  text: 'Payment channel networks are a promising approach to improve the scalability
    of cryptocurrencies: they allow to perform transactions in a peer-to-peer fashion,
    along multihop routes in the network, without requiring consensus on the blockchain.
    However, during the discovery of cost-efficient routes for the transaction, critical
    information may be revealed about the transacting entities. This paper initiates
    the study of privacy-preserving route discovery mechanisms for payment channel
    networks. In particular, we present LightPIR, an approach which allows a client
    to learn the shortest (or cheapest in terms of fees) path between two nodes without
    revealing any information about the endpoints of the transaction to the servers.
    The two main observations which allow for an efficient solution in LightPIR are
    that: (1) surprisingly, hub labelling algorithms – which were developed to preprocess
    “street network like” graphs so one can later efficiently compute shortest paths
    – also perform well for the graphs underlying payment channel networks, and that
    (2) hub labelling algorithms can be conveniently combined with private information
    retrieval. LightPIR relies on a simple hub labeling heuristic on top of existing
    hub labeling algorithms which leverages the specific topological features of cryptocurrency
    networks to further minimize storage and bandwidth overheads. In a case study
    considering the Lightning network, we show that our approach is an order of magnitude
    more efficient compared to a privacy-preserving baseline based on using private
    information retrieval on a database that stores all pairs shortest paths.'
article_processing_charge: No
arxiv: 1
author:
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: Iosif
  full_name: Salem, Iosif
  last_name: Salem
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
- first_name: Michelle X
  full_name: Yeo, Michelle X
  id: 2D82B818-F248-11E8-B48F-1D18A9856A87
  last_name: Yeo
  orcid: 0009-0001-3676-4809
citation:
  ama: 'Pietrzak KZ, Salem I, Schmid S, Yeo MX. LightPIR: Privacy-preserving route
    discovery for payment channel networks. In: IEEE; 2021. doi:<a href="https://doi.org/10.23919/IFIPNetworking52078.2021.9472205">10.23919/IFIPNetworking52078.2021.9472205</a>'
  apa: 'Pietrzak, K. Z., Salem, I., Schmid, S., &#38; Yeo, M. X. (2021). LightPIR:
    Privacy-preserving route discovery for payment channel networks. Presented at
    the 2021 IFIP Networking Conference (IFIP Networking), Espoo and Helsinki, Finland:
    IEEE. <a href="https://doi.org/10.23919/IFIPNetworking52078.2021.9472205">https://doi.org/10.23919/IFIPNetworking52078.2021.9472205</a>'
  chicago: 'Pietrzak, Krzysztof Z, Iosif Salem, Stefan Schmid, and Michelle X Yeo.
    “LightPIR: Privacy-Preserving Route Discovery for Payment Channel Networks.” IEEE,
    2021. <a href="https://doi.org/10.23919/IFIPNetworking52078.2021.9472205">https://doi.org/10.23919/IFIPNetworking52078.2021.9472205</a>.'
  ieee: 'K. Z. Pietrzak, I. Salem, S. Schmid, and M. X. Yeo, “LightPIR: Privacy-preserving
    route discovery for payment channel networks,” presented at the 2021 IFIP Networking
    Conference (IFIP Networking), Espoo and Helsinki, Finland, 2021.'
  ista: 'Pietrzak KZ, Salem I, Schmid S, Yeo MX. 2021. LightPIR: Privacy-preserving
    route discovery for payment channel networks. 2021 IFIP Networking Conference
    (IFIP Networking).'
  mla: 'Pietrzak, Krzysztof Z., et al. <i>LightPIR: Privacy-Preserving Route Discovery
    for Payment Channel Networks</i>. IEEE, 2021, doi:<a href="https://doi.org/10.23919/IFIPNetworking52078.2021.9472205">10.23919/IFIPNetworking52078.2021.9472205</a>.'
  short: K.Z. Pietrzak, I. Salem, S. Schmid, M.X. Yeo, in:, IEEE, 2021.
conference:
  end_date: 2021-06-24
  location: Espoo and Helsinki, Finland
  name: 2021 IFIP Networking Conference (IFIP Networking)
  start_date: 2021-06-21
date_created: 2021-08-29T22:01:16Z
date_published: 2021-06-21T00:00:00Z
date_updated: 2026-04-07T13:29:44Z
day: '21'
department:
- _id: KrPi
doi: 10.23919/IFIPNetworking52078.2021.9472205
ec_funded: 1
external_id:
  arxiv:
  - '2104.04293'
  isi:
  - '000853016800008'
fulldoi: https://doi.org/10.23919/IFIPNetworking52078.2021.9472205
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2104.04293
month: '06'
oa: 1
oa_version: Submitted Version
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
publication_identifier:
  eisbn:
  - 978-3-9031-7639-3
  eissn:
  - 1861-2288
  isbn:
  - 978-1-6654-4501-6
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '14506'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: 'LightPIR: Privacy-preserving route discovery for payment channel networks'
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '9973'
abstract:
- lang: eng
  text: In this article we introduce a complete gradient estimate for symmetric quantum
    Markov semigroups on von Neumann algebras equipped with a normal faithful tracial
    state, which implies semi-convexity of the entropy with respect to the recently
    introduced noncommutative 2-Wasserstein distance. We show that this complete gradient
    estimate is stable under tensor products and free products and establish its validity
    for a number of examples. As an application we prove a complete modified logarithmic
    Sobolev inequality with optimal constant for Poisson-type semigroups on free group
    factors.
acknowledgement: Both authors would like to thank Jan Maas for fruitful discussions
  and helpful comments.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Melchior
  full_name: Wirth, Melchior
  id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
  last_name: Wirth
  orcid: 0000-0002-0519-4241
- first_name: Haonan
  full_name: Zhang, Haonan
  id: D8F41E38-9E66-11E9-A9E2-65C2E5697425
  last_name: Zhang
citation:
  ama: Wirth M, Zhang H. Complete gradient estimates of quantum Markov semigroups.
    <i>Communications in Mathematical Physics</i>. 2021;387:761–791. doi:<a href="https://doi.org/10.1007/s00220-021-04199-4">10.1007/s00220-021-04199-4</a>
  apa: Wirth, M., &#38; Zhang, H. (2021). Complete gradient estimates of quantum Markov
    semigroups. <i>Communications in Mathematical Physics</i>. Springer Nature. <a
    href="https://doi.org/10.1007/s00220-021-04199-4">https://doi.org/10.1007/s00220-021-04199-4</a>
  chicago: Wirth, Melchior, and Haonan Zhang. “Complete Gradient Estimates of Quantum
    Markov Semigroups.” <i>Communications in Mathematical Physics</i>. Springer Nature,
    2021. <a href="https://doi.org/10.1007/s00220-021-04199-4">https://doi.org/10.1007/s00220-021-04199-4</a>.
  ieee: M. Wirth and H. Zhang, “Complete gradient estimates of quantum Markov semigroups,”
    <i>Communications in Mathematical Physics</i>, vol. 387. Springer Nature, pp.
    761–791, 2021.
  ista: Wirth M, Zhang H. 2021. Complete gradient estimates of quantum Markov semigroups.
    Communications in Mathematical Physics. 387, 761–791.
  mla: Wirth, Melchior, and Haonan Zhang. “Complete Gradient Estimates of Quantum
    Markov Semigroups.” <i>Communications in Mathematical Physics</i>, vol. 387, Springer
    Nature, 2021, pp. 761–791, doi:<a href="https://doi.org/10.1007/s00220-021-04199-4">10.1007/s00220-021-04199-4</a>.
  short: M. Wirth, H. Zhang, Communications in Mathematical Physics 387 (2021) 761–791.
corr_author: '1'
date_created: 2021-08-30T10:07:44Z
date_published: 2021-08-30T00:00:00Z
date_updated: 2025-06-12T06:30:13Z
day: '30'
ddc:
- '621'
department:
- _id: JaMa
doi: 10.1007/s00220-021-04199-4
ec_funded: 1
external_id:
  arxiv:
  - '2007.13506'
  isi:
  - '000691214200001'
  pmid:
  - '34776525'
file:
- access_level: open_access
  checksum: 8a602f916b1c2b0dc1159708b7cb204b
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-09-08T07:34:24Z
  date_updated: 2021-09-08T09:46:34Z
  file_id: '9990'
  file_name: 2021_CommunMathPhys_Wirth.pdf
  file_size: 505971
  relation: main_file
file_date_updated: 2021-09-08T09:46:34Z
fulldoi: https://doi.org/10.1007/s00220-021-04199-4
has_accepted_license: '1'
intvolume: '       387'
isi: 1
keyword:
- Mathematical Physics
- Statistical and Nonlinear Physics
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 761–791
pmid: 1
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
publication: Communications in Mathematical Physics
publication_identifier:
  eissn:
  - 1432-0916
  issn:
  - 0010-3616
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Complete gradient estimates of quantum Markov semigroups
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 387
year: '2021'
...
---
_id: '9978'
abstract:
- lang: eng
  text: Redox mediators could catalyse otherwise slow and energy-inefficient cycling
    of Li-S and Li-O 2 batteries by shuttling electrons/holes between the electrode
    and the solid insulating storage materials. For mediators to work efficiently
    they need to oxidize the solid with fast kinetics yet the lowest possible overpotential.
    Here, we found that when the redox potentials of mediators are tuned via, e.g.,
    Li + concentration in the electrolyte, they exhibit distinct threshold potentials,
    where the kinetics accelerate several-fold within a range as small as 10 mV. This
    phenomenon is independent of types of mediators and electrolyte. The acceleration
    originates from the overpotentials required to activate fast Li + /e – extraction
    and the following chemical step at specific abundant surface facets. Efficient
    redox catalysis at insulating solids requires therefore carefully considering
    the surface conditions of the storage materials and electrolyte-dependent redox
    potentials, which may be tuned by salt concentrations or solvents.
acknowledgement: 'This work was financially supported by the National Natural Science
  Foundation of China (51773092, 21975124, 11874254, 51802187, U2030206). S.A.F. is
  indebted to IST Austria for support. '
article_processing_charge: No
author:
- first_name: Deqing
  full_name: Cao, Deqing
  last_name: Cao
- first_name: Xiaoxiao
  full_name: Shen, Xiaoxiao
  last_name: Shen
- first_name: Aiping
  full_name: Wang, Aiping
  last_name: Wang
- first_name: Fengjiao
  full_name: Yu, Fengjiao
  last_name: Yu
- first_name: Yuping
  full_name: Wu, Yuping
  last_name: Wu
- first_name: Siqi
  full_name: Shi, Siqi
  last_name: Shi
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Yuhui
  full_name: Chen, Yuhui
  last_name: Chen
citation:
  ama: Cao D, Shen X, Wang A, et al. Sharp kinetic acceleration potentials during
    mediated redox catalysis of insulators. <i>Research Square</i>. doi:<a href="https://doi.org/10.21203/rs.3.rs-750965/v1">10.21203/rs.3.rs-750965/v1</a>
  apa: Cao, D., Shen, X., Wang, A., Yu, F., Wu, Y., Shi, S., … Chen, Y. (n.d.). Sharp
    kinetic acceleration potentials during mediated redox catalysis of insulators.
    <i>Research Square</i>. Research Square. <a href="https://doi.org/10.21203/rs.3.rs-750965/v1">https://doi.org/10.21203/rs.3.rs-750965/v1</a>
  chicago: Cao, Deqing, Xiaoxiao Shen, Aiping Wang, Fengjiao Yu, Yuping Wu, Siqi Shi,
    Stefan Alexander Freunberger, and Yuhui Chen. “Sharp Kinetic Acceleration Potentials
    during Mediated Redox Catalysis of Insulators.” <i>Research Square</i>. Research
    Square, n.d. <a href="https://doi.org/10.21203/rs.3.rs-750965/v1">https://doi.org/10.21203/rs.3.rs-750965/v1</a>.
  ieee: D. Cao <i>et al.</i>, “Sharp kinetic acceleration potentials during mediated
    redox catalysis of insulators,” <i>Research Square</i>. Research Square.
  ista: Cao D, Shen X, Wang A, Yu F, Wu Y, Shi S, Freunberger SA, Chen Y. Sharp kinetic
    acceleration potentials during mediated redox catalysis of insulators. Research
    Square, <a href="https://doi.org/10.21203/rs.3.rs-750965/v1">10.21203/rs.3.rs-750965/v1</a>.
  mla: Cao, Deqing, et al. “Sharp Kinetic Acceleration Potentials during Mediated
    Redox Catalysis of Insulators.” <i>Research Square</i>, Research Square, doi:<a
    href="https://doi.org/10.21203/rs.3.rs-750965/v1">10.21203/rs.3.rs-750965/v1</a>.
  short: D. Cao, X. Shen, A. Wang, F. Yu, Y. Wu, S. Shi, S.A. Freunberger, Y. Chen,
    Research Square (n.d.).
corr_author: '1'
date_created: 2021-08-31T12:54:16Z
date_published: 2021-08-18T00:00:00Z
date_updated: 2024-10-09T21:01:46Z
day: '18'
ddc:
- '541'
department:
- _id: StFr
doi: 10.21203/rs.3.rs-750965/v1
file:
- access_level: open_access
  checksum: 1878e91c29d5769ed5a827b0b7addf00
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-08-31T14:02:19Z
  date_updated: 2021-08-31T14:02:19Z
  file_id: '9979'
  file_name: 2021_ResearchSquare_Cao.pdf
  file_size: 1019662
  relation: main_file
  success: 1
file_date_updated: 2021-08-31T14:02:19Z
fulldoi: https://doi.org/10.21203/rs.3.rs-750965/v1
has_accepted_license: '1'
keyword:
- Catalysis
- Energy engineering
- Materials theory and modeling
language:
- iso: eng
month: '08'
oa: 1
oa_version: Preprint
page: '21'
publication: Research Square
publication_identifier:
  eissn:
  - 2693-5015
publication_status: submitted
publisher: Research Square
related_material:
  record:
  - id: '10813'
    relation: later_version
    status: public
status: public
title: Sharp kinetic acceleration potentials during mediated redox catalysis of insulators
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9980'
abstract:
- lang: eng
  text: Insufficient understanding of the mechanism that reversibly converts sulphur
    into lithium sulphide (Li2S) via soluble polysulphides (PS) hampers the realization
    of high performance lithium-sulphur cells. Typically Li2S formation is explained
    by direct electroreduction of a PS to Li2S; however, this is not consistent with
    the size of the insulating Li2S deposits. Here, we use in situ small and wide
    angle X-ray scattering (SAXS/WAXS) to track the growth and dissolution of crystalline
    and amorphous deposits from atomic to sub-micron scales during charge and discharge.
    Stochastic modelling based on the SAXS data allows quantification of the chemical
    phase evolution during discharge and charge. We show that Li2S deposits predominantly
    via disproportionation of transient, solid Li2S2 to form primary Li2S crystallites
    and solid Li2S4 particles. We further demonstrate that this process happens in
    reverse during charge. These findings show that the discharge capacity and rate
    capability in Li-S battery cathodes are therefore limited by mass transport through
    the increasingly tortuous network of Li2S / Li2S4 / carbon pores rather than electron
    transport through a passivating surface film.
acknowledgement: "This project has received funding from the European Union’s Horizon
  2020 research and innovation program under the Marie Skłodowska-Curie grant NanoEvolution,
  grant agreement No 894042. The authors acknowledge TU Graz for support through the
  Lead Project LP-03. Likewise, the use of SOMAPP Lab, a core facility supported by
  the Austrian Federal Ministry of Education, Science and Research, the Graz University\r\n6
  of Technology, the University of Graz, and Anton Paar GmbH is acknowledged. S.D.T,
  A.V. and R.D. acknowledge the financial support by the Slovenian Research Agency
  (ARRS) research core funding P2-0393. Furthermore, A.V. acknowledge the funding
  from the Slovenian Research Agency, research project Z2-1863. S.A.F. is indebted
  to IST Austria for support. "
article_processing_charge: No
author:
- first_name: Christian
  full_name: Prehal, Christian
  last_name: Prehal
- first_name: Sara Drvarič
  full_name: Talian, Sara Drvarič
  last_name: Talian
- first_name: Alen
  full_name: Vizintin, Alen
  last_name: Vizintin
- first_name: Heinz
  full_name: Amenitsch, Heinz
  last_name: Amenitsch
- first_name: Robert
  full_name: Dominko, Robert
  last_name: Dominko
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Vanessa
  full_name: Wood, Vanessa
  last_name: Wood
citation:
  ama: Prehal C, Talian SD, Vizintin A, et al. Mechanism of Li2S formation and dissolution
    in Lithium-Sulphur batteries. <i>Research Square</i>. doi:<a href="https://doi.org/10.21203/rs.3.rs-818607/v1">10.21203/rs.3.rs-818607/v1</a>
  apa: Prehal, C., Talian, S. D., Vizintin, A., Amenitsch, H., Dominko, R., Freunberger,
    S. A., &#38; Wood, V. (n.d.). Mechanism of Li2S formation and dissolution in Lithium-Sulphur
    batteries. <i>Research Square</i>. <a href="https://doi.org/10.21203/rs.3.rs-818607/v1">https://doi.org/10.21203/rs.3.rs-818607/v1</a>
  chicago: Prehal, Christian, Sara Drvarič Talian, Alen Vizintin, Heinz Amenitsch,
    Robert Dominko, Stefan Alexander Freunberger, and Vanessa Wood. “Mechanism of
    Li2S Formation and Dissolution in Lithium-Sulphur Batteries.” <i>Research Square</i>,
    n.d. <a href="https://doi.org/10.21203/rs.3.rs-818607/v1">https://doi.org/10.21203/rs.3.rs-818607/v1</a>.
  ieee: C. Prehal <i>et al.</i>, “Mechanism of Li2S formation and dissolution in Lithium-Sulphur
    batteries,” <i>Research Square</i>. .
  ista: Prehal C, Talian SD, Vizintin A, Amenitsch H, Dominko R, Freunberger SA, Wood
    V. Mechanism of Li2S formation and dissolution in Lithium-Sulphur batteries. Research
    Square, <a href="https://doi.org/10.21203/rs.3.rs-818607/v1">10.21203/rs.3.rs-818607/v1</a>.
  mla: Prehal, Christian, et al. “Mechanism of Li2S Formation and Dissolution in Lithium-Sulphur
    Batteries.” <i>Research Square</i>, doi:<a href="https://doi.org/10.21203/rs.3.rs-818607/v1">10.21203/rs.3.rs-818607/v1</a>.
  short: C. Prehal, S.D. Talian, A. Vizintin, H. Amenitsch, R. Dominko, S.A. Freunberger,
    V. Wood, Research Square (n.d.).
date_created: 2021-09-02T08:45:00Z
date_published: 2021-08-16T00:00:00Z
date_updated: 2021-12-03T10:35:42Z
day: '16'
ddc:
- '621'
department:
- _id: StFr
doi: 10.21203/rs.3.rs-818607/v1
fulldoi: https://doi.org/10.21203/rs.3.rs-818607/v1
keyword:
- Li2S
- Lithium Sulphur Batteries
- SAXS
- WAXS
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.researchsquare.com/article/rs-818607/v1
month: '08'
oa: 1
oa_version: Preprint
page: '21'
publication: Research Square
publication_status: submitted
status: public
title: Mechanism of Li2S formation and dissolution in Lithium-Sulphur batteries
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2021'
...
---
_id: '9981'
abstract:
- lang: eng
  text: "The numerical simulation of dynamical phenomena in interacting quantum systems
    is a notoriously hard problem. Although a number of promising numerical methods
    exist, they often have limited applicability due to the growth of entanglement
    or the presence of the so-called sign problem. In this work, we develop an importance
    sampling scheme for the simulation of quantum spin dynamics, building on a recent
    approach mapping quantum spin systems to classical stochastic processes. The importance
    sampling scheme is based on identifying the classical trajectory that yields the
    largest contribution to a given quantum observable. An exact transformation is
    then carried out to preferentially sample trajectories that are close to the dominant
    one. We demonstrate that this approach is capable of reducing the temporal growth
    of fluctuations in the stochastic quantities, thus extending the range of accessible
    times and system sizes compared to direct sampling. We discuss advantages and
    limitations of the proposed approach, outlining directions\r\nfor further developments."
article_number: '048'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefano
  full_name: De Nicola, Stefano
  id: 42832B76-F248-11E8-B48F-1D18A9856A87
  last_name: De Nicola
  orcid: 0000-0002-4842-6671
citation:
  ama: De Nicola S. Importance sampling scheme for the stochastic simulation of quantum
    spin dynamics. <i>SciPost Physics</i>. 2021;11(3). doi:<a href="https://doi.org/10.21468/scipostphys.11.3.048">10.21468/scipostphys.11.3.048</a>
  apa: De Nicola, S. (2021). Importance sampling scheme for the stochastic simulation
    of quantum spin dynamics. <i>SciPost Physics</i>. SciPost Foundation. <a href="https://doi.org/10.21468/scipostphys.11.3.048">https://doi.org/10.21468/scipostphys.11.3.048</a>
  chicago: De Nicola, Stefano. “Importance Sampling Scheme for the Stochastic Simulation
    of Quantum Spin Dynamics.” <i>SciPost Physics</i>. SciPost Foundation, 2021. <a
    href="https://doi.org/10.21468/scipostphys.11.3.048">https://doi.org/10.21468/scipostphys.11.3.048</a>.
  ieee: S. De Nicola, “Importance sampling scheme for the stochastic simulation of
    quantum spin dynamics,” <i>SciPost Physics</i>, vol. 11, no. 3. SciPost Foundation,
    2021.
  ista: De Nicola S. 2021. Importance sampling scheme for the stochastic simulation
    of quantum spin dynamics. SciPost Physics. 11(3), 048.
  mla: De Nicola, Stefano. “Importance Sampling Scheme for the Stochastic Simulation
    of Quantum Spin Dynamics.” <i>SciPost Physics</i>, vol. 11, no. 3, 048, SciPost
    Foundation, 2021, doi:<a href="https://doi.org/10.21468/scipostphys.11.3.048">10.21468/scipostphys.11.3.048</a>.
  short: S. De Nicola, SciPost Physics 11 (2021).
date_created: 2021-09-02T11:49:47Z
date_published: 2021-09-02T00:00:00Z
date_updated: 2025-05-14T10:51:45Z
day: '02'
ddc:
- '519'
department:
- _id: MaSe
doi: 10.21468/scipostphys.11.3.048
ec_funded: 1
external_id:
  arxiv:
  - '2103.16468'
  isi:
  - '000692534200001'
file:
- access_level: open_access
  checksum: e4ec69d893e31811efc6093cb6ea8eb7
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-09-02T14:05:43Z
  date_updated: 2021-09-02T14:05:43Z
  file_id: '9984'
  file_name: 2021_SciPostPhys_DeNicola.pdf
  file_size: 373833
  relation: main_file
  success: 1
file_date_updated: 2021-09-02T14:05:43Z
fulldoi: https://doi.org/10.21468/scipostphys.11.3.048
has_accepted_license: '1'
intvolume: '        11'
isi: 1
issue: '3'
keyword:
- General Physics and Astronomy
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: SciPost Physics
publication_identifier:
  eissn:
  - 2666-9366
  issn:
  - 2542-4653
publication_status: published
publisher: SciPost Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Importance sampling scheme for the stochastic simulation of quantum spin dynamics
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2021'
...
---
_id: '9985'
abstract:
- lang: eng
  text: AMPA receptor (AMPAR) abundance and positioning at excitatory synapses regulates
    the strength of transmission. Changes in AMPAR localisation can enact synaptic
    plasticity, allowing long-term information storage, and is therefore tightly controlled.
    Multiple mechanisms regulating AMPAR synaptic anchoring have been described, but
    with limited coherence or comparison between reports, our understanding of this
    process is unclear. Here, combining synaptic recordings from mouse hippocampal
    slices and super-resolution imaging in dissociated cultures, we compare the contributions
    of three AMPAR interaction domains controlling transmission at hippocampal CA1
    synapses. We show that the AMPAR C-termini play only a modulatory role, whereas
    the extracellular N-terminal domain (NTD) and PDZ interactions of the auxiliary
    subunit TARP γ8 are both crucial, and each is sufficient to maintain transmission.
    Our data support a model in which γ8 accumulates AMPARs at the postsynaptic density,
    where the NTD further tunes their positioning. This interplay between cytosolic
    (TARP γ8) and synaptic cleft (NTD) interactions provides versatility to regulate
    synaptic transmission and plasticity.
acknowledgement: The authors are very grateful to Andrew Penn for advice and discussions
  on surface receptor labelling in slice tissue, dissociated culture transfection,
  and for providing tdTomato and BirAER expression plasmids. This work would not have
  been possible without support from the Biological Services teams at both the Laboratory
  of Molecular Biology and Ares facilities. We are also very grateful to Nick Barry
  and Jerome Boulanger of the LMB Light Microscopy facility for support with confocal
  and STORM imaging and analysis, Junichi Takagi for providing scFv-Clasp expression
  constructs, Veronica Chang for assistance with scFv-Clasp protein production, and
  Nejc Kejzar for assistance with cluster analysis. We would like to thank Teru Nakagawa
  and Ole Paulsen for critical reading of the manuscript and constructive feedback.
  This work was supported by grants from the Medical Research Council (MC_U105174197)
  and BBSRC (BB/N002113/1).
article_number: '5083'
article_processing_charge: Yes
article_type: original
author:
- first_name: Jake
  full_name: Watson, Jake
  id: 63836096-4690-11EA-BD4E-32803DDC885E
  last_name: Watson
  orcid: 0000-0002-8698-3823
- first_name: Alexandra
  full_name: Pinggera, Alexandra
  last_name: Pinggera
- first_name: Hinze
  full_name: Ho, Hinze
  last_name: Ho
- first_name: Ingo H.
  full_name: Greger, Ingo H.
  last_name: Greger
citation:
  ama: Watson J, Pinggera A, Ho H, Greger IH. AMPA receptor anchoring at CA1 synapses
    is determined by N-terminal domain and TARP γ8 interactions. <i>Nature Communications</i>.
    2021;12(1). doi:<a href="https://doi.org/10.1038/s41467-021-25281-4">10.1038/s41467-021-25281-4</a>
  apa: Watson, J., Pinggera, A., Ho, H., &#38; Greger, I. H. (2021). AMPA receptor
    anchoring at CA1 synapses is determined by N-terminal domain and TARP γ8 interactions.
    <i>Nature Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41467-021-25281-4">https://doi.org/10.1038/s41467-021-25281-4</a>
  chicago: Watson, Jake, Alexandra Pinggera, Hinze Ho, and Ingo H. Greger. “AMPA Receptor
    Anchoring at CA1 Synapses Is Determined by N-Terminal Domain and TARP Γ8 Interactions.”
    <i>Nature Communications</i>. Nature Publishing Group, 2021. <a href="https://doi.org/10.1038/s41467-021-25281-4">https://doi.org/10.1038/s41467-021-25281-4</a>.
  ieee: J. Watson, A. Pinggera, H. Ho, and I. H. Greger, “AMPA receptor anchoring
    at CA1 synapses is determined by N-terminal domain and TARP γ8 interactions,”
    <i>Nature Communications</i>, vol. 12, no. 1. Nature Publishing Group, 2021.
  ista: Watson J, Pinggera A, Ho H, Greger IH. 2021. AMPA receptor anchoring at CA1
    synapses is determined by N-terminal domain and TARP γ8 interactions. Nature Communications.
    12(1), 5083.
  mla: Watson, Jake, et al. “AMPA Receptor Anchoring at CA1 Synapses Is Determined
    by N-Terminal Domain and TARP Γ8 Interactions.” <i>Nature Communications</i>,
    vol. 12, no. 1, 5083, Nature Publishing Group, 2021, doi:<a href="https://doi.org/10.1038/s41467-021-25281-4">10.1038/s41467-021-25281-4</a>.
  short: J. Watson, A. Pinggera, H. Ho, I.H. Greger, Nature Communications 12 (2021).
date_created: 2021-09-05T22:01:23Z
date_published: 2021-08-23T00:00:00Z
date_updated: 2023-08-11T11:07:51Z
day: '23'
ddc:
- '612'
department:
- _id: PeJo
doi: 10.1038/s41467-021-25281-4
external_id:
  isi:
  - '000687672000006'
  pmid:
  - '34426577 '
file:
- access_level: open_access
  checksum: 1bf4f6a561f96bc426d754de9cb57710
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-09-08T12:57:06Z
  date_updated: 2021-09-08T12:57:06Z
  file_id: '9991'
  file_name: 2021_NatureCommunications_Watson.pdf
  file_size: 18310502
  relation: main_file
  success: 1
file_date_updated: 2021-09-08T12:57:06Z
fulldoi: https://doi.org/10.1038/s41467-021-25281-4
has_accepted_license: '1'
intvolume: '        12'
isi: 1
issue: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: AMPA receptor anchoring at CA1 synapses is determined by N-terminal domain
  and TARP γ8 interactions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 12
year: '2021'
...
---
_id: '9986'
abstract:
- lang: eng
  text: Size control is a fundamental question in biology, showing incremental complexity
    in plants, whose cells possess a rigid cell wall. The phytohormone auxin is a
    vital growth regulator with central importance for differential growth control.
    Our results indicate that auxin-reliant growth programs affect the molecular complexity
    of xyloglucans, the major type of cell wall hemicellulose in eudicots. Auxin-dependent
    induction and repression of growth coincide with reduced and enhanced molecular
    complexity of xyloglucans, respectively. In agreement with a proposed function
    in growth control, genetic interference with xyloglucan side decorations distinctly
    modulates auxin-dependent differential growth rates. Our work proposes that auxin-dependent
    growth programs have a spatially defined effect on xyloglucan’s molecular structure,
    which in turn affects cell wall mechanics and specifies differential, gravitropic
    hypocotyl growth.
acknowledgement: "We are grateful to Paul Knox, Markus Pauly, Malcom O’Neill, and
  Ignacio Zarra for providing published material; the BOKU-VIBT Imaging Center for
  access and M. Debreczeny for expertise; J.I. Thaker and Georg Seifert for critical
  reading.\r\n"
article_number: '9222'
article_processing_charge: Yes
article_type: original
author:
- first_name: Silvia Melina
  full_name: Velasquez, Silvia Melina
  last_name: Velasquez
- first_name: Xiaoyuan
  full_name: Guo, Xiaoyuan
  last_name: Guo
- first_name: Marçal
  full_name: Gallemi, Marçal
  id: 460C6802-F248-11E8-B48F-1D18A9856A87
  last_name: Gallemi
  orcid: 0000-0003-4675-6893
- first_name: Bibek
  full_name: Aryal, Bibek
  last_name: Aryal
- first_name: Peter
  full_name: Venhuizen, Peter
  last_name: Venhuizen
- first_name: Elke
  full_name: Barbez, Elke
  last_name: Barbez
- first_name: Kai Alexander
  full_name: Dünser, Kai Alexander
  last_name: Dünser
- first_name: Martin
  full_name: Darino, Martin
  last_name: Darino
- first_name: Aleš
  full_name: Pӗnčík, Aleš
  last_name: Pӗnčík
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Maria
  full_name: Kalyna, Maria
  last_name: Kalyna
- first_name: Gregory
  full_name: Mouille, Gregory
  last_name: Mouille
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Rishikesh P.
  full_name: Bhalerao, Rishikesh P.
  last_name: Bhalerao
- first_name: Jozef
  full_name: Mravec, Jozef
  last_name: Mravec
- first_name: Jürgen
  full_name: Kleine-Vehn, Jürgen
  last_name: Kleine-Vehn
citation:
  ama: Velasquez SM, Guo X, Gallemi M, et al. Xyloglucan remodeling defines auxin-dependent
    differential tissue expansion in plants. <i>International Journal of Molecular
    Sciences</i>. 2021;22(17). doi:<a href="https://doi.org/10.3390/ijms22179222">10.3390/ijms22179222</a>
  apa: Velasquez, S. M., Guo, X., Gallemi, M., Aryal, B., Venhuizen, P., Barbez, E.,
    … Kleine-Vehn, J. (2021). Xyloglucan remodeling defines auxin-dependent differential
    tissue expansion in plants. <i>International Journal of Molecular Sciences</i>.
    MDPI. <a href="https://doi.org/10.3390/ijms22179222">https://doi.org/10.3390/ijms22179222</a>
  chicago: Velasquez, Silvia Melina, Xiaoyuan Guo, Marçal Gallemi, Bibek Aryal, Peter
    Venhuizen, Elke Barbez, Kai Alexander Dünser, et al. “Xyloglucan Remodeling Defines
    Auxin-Dependent Differential Tissue Expansion in Plants.” <i>International Journal
    of Molecular Sciences</i>. MDPI, 2021. <a href="https://doi.org/10.3390/ijms22179222">https://doi.org/10.3390/ijms22179222</a>.
  ieee: S. M. Velasquez <i>et al.</i>, “Xyloglucan remodeling defines auxin-dependent
    differential tissue expansion in plants,” <i>International Journal of Molecular
    Sciences</i>, vol. 22, no. 17. MDPI, 2021.
  ista: Velasquez SM, Guo X, Gallemi M, Aryal B, Venhuizen P, Barbez E, Dünser KA,
    Darino M, Pӗnčík A, Novák O, Kalyna M, Mouille G, Benková E, Bhalerao RP, Mravec
    J, Kleine-Vehn J. 2021. Xyloglucan remodeling defines auxin-dependent differential
    tissue expansion in plants. International Journal of Molecular Sciences. 22(17),
    9222.
  mla: Velasquez, Silvia Melina, et al. “Xyloglucan Remodeling Defines Auxin-Dependent
    Differential Tissue Expansion in Plants.” <i>International Journal of Molecular
    Sciences</i>, vol. 22, no. 17, 9222, MDPI, 2021, doi:<a href="https://doi.org/10.3390/ijms22179222">10.3390/ijms22179222</a>.
  short: S.M. Velasquez, X. Guo, M. Gallemi, B. Aryal, P. Venhuizen, E. Barbez, K.A.
    Dünser, M. Darino, A. Pӗnčík, O. Novák, M. Kalyna, G. Mouille, E. Benková, R.P.
    Bhalerao, J. Mravec, J. Kleine-Vehn, International Journal of Molecular Sciences
    22 (2021).
corr_author: '1'
date_created: 2021-09-05T22:01:24Z
date_published: 2021-08-26T00:00:00Z
date_updated: 2024-10-09T21:00:50Z
day: '26'
ddc:
- '575'
department:
- _id: EvBe
doi: 10.3390/ijms22179222
external_id:
  isi:
  - '000694347100001'
  pmid:
  - '34502129'
file:
- access_level: open_access
  checksum: 6b7055cf89f1b7ed8594c3fdf56f000b
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-09-06T12:50:19Z
  date_updated: 2021-09-07T09:04:53Z
  file_id: '9988'
  file_name: 2021_IntJMolecularSciences_Velasquez.pdf
  file_size: 2162247
  relation: main_file
file_date_updated: 2021-09-07T09:04:53Z
fulldoi: https://doi.org/10.3390/ijms22179222
has_accepted_license: '1'
intvolume: '        22'
isi: 1
issue: '17'
keyword:
- auxin
- growth
- cell wall
- xyloglucans
- hypocotyls
- gravitropism
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: International Journal of Molecular Sciences
publication_identifier:
  eissn:
  - 1422-0067
  issn:
  - 1661-6596
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Xyloglucan remodeling defines auxin-dependent differential tissue expansion
  in plants
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2021'
...
---
_id: '9987'
abstract:
- lang: eng
  text: 'Stateless model checking (SMC) is one of the standard approaches to the verification
    of concurrent programs. As scheduling non-determinism creates exponentially large
    spaces of thread interleavings, SMC attempts to partition this space into equivalence
    classes and explore only a few representatives from each class. The efficiency
    of this approach depends on two factors: (a) the coarseness of the partitioning,
    and (b) the time to generate representatives in each class. For this reason, the
    search for coarse partitionings that are efficiently explorable is an active research
    challenge. In this work we present   RVF-SMC , a new SMC algorithm that uses a
    novel reads-value-from (RVF) partitioning. Intuitively, two interleavings are
    deemed equivalent if they agree on the value obtained in each read event, and
    read events induce consistent causal orderings between them. The RVF partitioning
    is provably coarser than recent approaches based on Mazurkiewicz and “reads-from”
    partitionings. Our experimental evaluation reveals that RVF is quite often a very
    effective equivalence, as the underlying partitioning is exponentially coarser
    than other approaches. Moreover,   RVF-SMC  generates representatives very efficiently,
    as the reduction in the partitioning is often met with significant speed-ups in
    the model checking task.'
acknowledgement: The research was partially funded by the ERC CoG 863818 (ForM-SMArt)
  and the Vienna Science and Technology Fund (WWTF) through project ICT15-003.
alternative_title:
- LNCS
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Pratyush
  full_name: Agarwal, Pratyush
  last_name: Agarwal
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Shreya
  full_name: Pathak, Shreya
  last_name: Pathak
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Viktor
  full_name: Toman, Viktor
  id: 3AF3DA7C-F248-11E8-B48F-1D18A9856A87
  last_name: Toman
  orcid: 0000-0001-9036-063X
citation:
  ama: 'Agarwal P, Chatterjee K, Pathak S, Pavlogiannis A, Toman V. Stateless model
    checking under a reads-value-from equivalence. In: <i>33rd International Conference
    on Computer-Aided Verification </i>. Vol 12759. Springer Nature; 2021:341-366.
    doi:<a href="https://doi.org/10.1007/978-3-030-81685-8_16">10.1007/978-3-030-81685-8_16</a>'
  apa: 'Agarwal, P., Chatterjee, K., Pathak, S., Pavlogiannis, A., &#38; Toman, V.
    (2021). Stateless model checking under a reads-value-from equivalence. In <i>33rd
    International Conference on Computer-Aided Verification </i> (Vol. 12759, pp.
    341–366). Virtual: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-81685-8_16">https://doi.org/10.1007/978-3-030-81685-8_16</a>'
  chicago: Agarwal, Pratyush, Krishnendu Chatterjee, Shreya Pathak, Andreas Pavlogiannis,
    and Viktor Toman. “Stateless Model Checking under a Reads-Value-from Equivalence.”
    In <i>33rd International Conference on Computer-Aided Verification </i>, 12759:341–66.
    Springer Nature, 2021. <a href="https://doi.org/10.1007/978-3-030-81685-8_16">https://doi.org/10.1007/978-3-030-81685-8_16</a>.
  ieee: P. Agarwal, K. Chatterjee, S. Pathak, A. Pavlogiannis, and V. Toman, “Stateless
    model checking under a reads-value-from equivalence,” in <i>33rd International
    Conference on Computer-Aided Verification </i>, Virtual, 2021, vol. 12759, pp.
    341–366.
  ista: 'Agarwal P, Chatterjee K, Pathak S, Pavlogiannis A, Toman V. 2021. Stateless
    model checking under a reads-value-from equivalence. 33rd International Conference
    on Computer-Aided Verification . CAV: Computer Aided Verification , LNCS, vol.
    12759, 341–366.'
  mla: Agarwal, Pratyush, et al. “Stateless Model Checking under a Reads-Value-from
    Equivalence.” <i>33rd International Conference on Computer-Aided Verification
    </i>, vol. 12759, Springer Nature, 2021, pp. 341–66, doi:<a href="https://doi.org/10.1007/978-3-030-81685-8_16">10.1007/978-3-030-81685-8_16</a>.
  short: P. Agarwal, K. Chatterjee, S. Pathak, A. Pavlogiannis, V. Toman, in:, 33rd
    International Conference on Computer-Aided Verification , Springer Nature, 2021,
    pp. 341–366.
conference:
  end_date: 2021-07-23
  location: Virtual
  name: 'CAV: Computer Aided Verification '
  start_date: 2021-07-20
corr_author: '1'
date_created: 2021-09-05T22:01:24Z
date_published: 2021-07-15T00:00:00Z
date_updated: 2026-04-08T07:00:30Z
day: '15'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/978-3-030-81685-8_16
ec_funded: 1
external_id:
  arxiv:
  - '2105.06424'
  isi:
  - '000698732400016'
file:
- access_level: open_access
  checksum: 4b346e5fbaa8b9bdf107819c7b2aadee
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-13T07:00:20Z
  date_updated: 2022-05-13T07:00:20Z
  file_id: '11368'
  file_name: 2021_LNCS_Agarwal.pdf
  file_size: 1516756
  relation: main_file
  success: 1
file_date_updated: 2022-05-13T07:00:20Z
fulldoi: https://doi.org/10.1007/978-3-030-81685-8_16
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 341-366
project:
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
  grant_number: ICT15-003
  name: Efficient Algorithms for Computer Aided Verification
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: '33rd International Conference on Computer-Aided Verification '
publication_identifier:
  eisbn:
  - 978-3-030-81685-8
  eissn:
  - 1611-3349
  isbn:
  - 978-3-030-81684-1
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '10199'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Stateless model checking under a reads-value-from equivalence
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: '12759 '
year: '2021'
...
---
_id: '9998'
abstract:
- lang: eng
  text: We define quantum equivariant K-theory of Nakajima quiver varieties. We discuss
    type A in detail as well as its connections with quantum XXZ spin chains and trigonometric
    Ruijsenaars-Schneider models. Finally we study a limit which produces a K-theoretic
    version of results of Givental and Kim, connecting quantum geometry of flag varieties
    and Toda lattice.
acknowledgement: 'First of all we would like to thank Andrei Okounkov for invaluable
  discussions, advises and sharing with us his fantastic viewpoint on modern quantum
  geometry. We are also grateful to D. Korb and Z. Zhou for their interest and comments.
  The work of A. Smirnov was supported in part by RFBR Grants under Numbers 15-02-04175
  and 15-01-04217 and in part by NSF Grant DMS–2054527. The work of P. Koroteev, A.M.
  Zeitlin and A. Smirnov is supported in part by AMS Simons travel Grant. A. M. Zeitlin
  is partially supported by Simons Collaboration Grant, Award ID: 578501. Open access
  funding provided by Institute of Science and Technology (IST Austria).'
article_number: '87'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Peter
  full_name: Koroteev, Peter
  last_name: Koroteev
- first_name: Petr
  full_name: Pushkar, Petr
  id: 151DCEB6-9EC3-11E9-8480-ABECE5697425
  last_name: Pushkar
- first_name: Andrey V.
  full_name: Smirnov, Andrey V.
  last_name: Smirnov
- first_name: Anton M.
  full_name: Zeitlin, Anton M.
  last_name: Zeitlin
citation:
  ama: Koroteev P, Pushkar P, Smirnov AV, Zeitlin AM. Quantum K-theory of quiver varieties
    and many-body systems. <i>Selecta Mathematica</i>. 2021;27(5). doi:<a href="https://doi.org/10.1007/s00029-021-00698-3">10.1007/s00029-021-00698-3</a>
  apa: Koroteev, P., Pushkar, P., Smirnov, A. V., &#38; Zeitlin, A. M. (2021). Quantum
    K-theory of quiver varieties and many-body systems. <i>Selecta Mathematica</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00029-021-00698-3">https://doi.org/10.1007/s00029-021-00698-3</a>
  chicago: Koroteev, Peter, Petr Pushkar, Andrey V. Smirnov, and Anton M. Zeitlin.
    “Quantum K-Theory of Quiver Varieties and Many-Body Systems.” <i>Selecta Mathematica</i>.
    Springer Nature, 2021. <a href="https://doi.org/10.1007/s00029-021-00698-3">https://doi.org/10.1007/s00029-021-00698-3</a>.
  ieee: P. Koroteev, P. Pushkar, A. V. Smirnov, and A. M. Zeitlin, “Quantum K-theory
    of quiver varieties and many-body systems,” <i>Selecta Mathematica</i>, vol. 27,
    no. 5. Springer Nature, 2021.
  ista: Koroteev P, Pushkar P, Smirnov AV, Zeitlin AM. 2021. Quantum K-theory of quiver
    varieties and many-body systems. Selecta Mathematica. 27(5), 87.
  mla: Koroteev, Peter, et al. “Quantum K-Theory of Quiver Varieties and Many-Body
    Systems.” <i>Selecta Mathematica</i>, vol. 27, no. 5, 87, Springer Nature, 2021,
    doi:<a href="https://doi.org/10.1007/s00029-021-00698-3">10.1007/s00029-021-00698-3</a>.
  short: P. Koroteev, P. Pushkar, A.V. Smirnov, A.M. Zeitlin, Selecta Mathematica
    27 (2021).
date_created: 2021-09-12T22:01:22Z
date_published: 2021-08-30T00:00:00Z
date_updated: 2025-04-15T06:53:09Z
day: '30'
ddc:
- '530'
department:
- _id: TaHa
doi: 10.1007/s00029-021-00698-3
external_id:
  isi:
  - '000692795200001'
file:
- access_level: open_access
  checksum: beadc5a722ffb48190e1e63ee2dbfee5
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-09-13T11:31:34Z
  date_updated: 2021-09-13T11:31:34Z
  file_id: '10010'
  file_name: 2021_SelectaMath_Koroteev.pdf
  file_size: 584648
  relation: main_file
  success: 1
file_date_updated: 2021-09-13T11:31:34Z
fulldoi: https://doi.org/10.1007/s00029-021-00698-3
has_accepted_license: '1'
intvolume: '        27'
isi: 1
issue: '5'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Selecta Mathematica
publication_identifier:
  eissn:
  - 1420-9020
  issn:
  - 1022-1824
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum K-theory of quiver varieties and many-body systems
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 27
year: '2021'
...
---
_id: '9999'
abstract:
- lang: eng
  text: 'The developmental strategies used by progenitor cells to endure a safe journey
    from their induction place towards the site of terminal differentiation are still
    poorly understood. Here we uncovered a progenitor cell allocation mechanism that
    stems from an incomplete process of epithelial delamination that allows progenitors
    to coordinate their movement with adjacent extra-embryonic tissues. Progenitors
    of the zebrafish laterality organ originate from the surface epithelial enveloping
    layer by an apical constriction process of cell delamination. During this process,
    progenitors retain long-term apical contacts that enable the epithelial layer
    to pull a subset of progenitors along their way towards the vegetal pole. The
    remaining delaminated progenitors follow apically-attached progenitors’ movement
    by a co-attraction mechanism, avoiding sequestration by the adjacent endoderm,
    ensuring their fate and collective allocation at the differentiation site. Thus,
    we reveal that incomplete delamination serves as a cellular platform for coordinated
    tissue movements during development. Impact Statement: Incomplete delamination
    serves as a cellular platform for coordinated tissue movements during development,
    guiding newly formed progenitor cell groups to the differentiation site.'
article_number: e66483
article_processing_charge: Yes
article_type: original
author:
- first_name: Eduardo
  full_name: Pulgar, Eduardo
  last_name: Pulgar
- first_name: Cornelia
  full_name: Schwayer, Cornelia
  id: 3436488C-F248-11E8-B48F-1D18A9856A87
  last_name: Schwayer
  orcid: 0000-0001-5130-2226
- first_name: Néstor
  full_name: Guerrero, Néstor
  last_name: Guerrero
- first_name: Loreto
  full_name: López, Loreto
  last_name: López
- first_name: Susana
  full_name: Márquez, Susana
  last_name: Márquez
- first_name: Steffen
  full_name: Härtel, Steffen
  last_name: Härtel
- first_name: Rodrigo
  full_name: Soto, Rodrigo
  last_name: Soto
- first_name: Carl Philipp
  full_name: Heisenberg, Carl Philipp
  last_name: Heisenberg
- first_name: Miguel L.
  full_name: Concha, Miguel L.
  last_name: Concha
citation:
  ama: Pulgar E, Schwayer C, Guerrero N, et al. Apical contacts stemming from incomplete
    delamination guide progenitor cell allocation through a dragging mechanism. <i>eLife</i>.
    2021;10. doi:<a href="https://doi.org/10.7554/eLife.66483">10.7554/eLife.66483</a>
  apa: Pulgar, E., Schwayer, C., Guerrero, N., López, L., Márquez, S., Härtel, S.,
    … Concha, M. L. (2021). Apical contacts stemming from incomplete delamination
    guide progenitor cell allocation through a dragging mechanism. <i>ELife</i>. eLife
    Sciences Publications. <a href="https://doi.org/10.7554/eLife.66483">https://doi.org/10.7554/eLife.66483</a>
  chicago: Pulgar, Eduardo, Cornelia Schwayer, Néstor Guerrero, Loreto López, Susana
    Márquez, Steffen Härtel, Rodrigo Soto, Carl Philipp Heisenberg, and Miguel L.
    Concha. “Apical Contacts Stemming from Incomplete Delamination Guide Progenitor
    Cell Allocation through a Dragging Mechanism.” <i>ELife</i>. eLife Sciences Publications,
    2021. <a href="https://doi.org/10.7554/eLife.66483">https://doi.org/10.7554/eLife.66483</a>.
  ieee: E. Pulgar <i>et al.</i>, “Apical contacts stemming from incomplete delamination
    guide progenitor cell allocation through a dragging mechanism,” <i>eLife</i>,
    vol. 10. eLife Sciences Publications, 2021.
  ista: Pulgar E, Schwayer C, Guerrero N, López L, Márquez S, Härtel S, Soto R, Heisenberg
    CP, Concha ML. 2021. Apical contacts stemming from incomplete delamination guide
    progenitor cell allocation through a dragging mechanism. eLife. 10, e66483.
  mla: Pulgar, Eduardo, et al. “Apical Contacts Stemming from Incomplete Delamination
    Guide Progenitor Cell Allocation through a Dragging Mechanism.” <i>ELife</i>,
    vol. 10, e66483, eLife Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/eLife.66483">10.7554/eLife.66483</a>.
  short: E. Pulgar, C. Schwayer, N. Guerrero, L. López, S. Márquez, S. Härtel, R.
    Soto, C.P. Heisenberg, M.L. Concha, ELife 10 (2021).
date_created: 2021-09-12T22:01:23Z
date_published: 2021-08-27T00:00:00Z
date_updated: 2025-04-14T07:46:58Z
day: '27'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.7554/eLife.66483
ec_funded: 1
external_id:
  isi:
  - '000700428500001'
  pmid:
  - '34448451'
file:
- access_level: open_access
  checksum: a3f82b0499cc822ac1eab48a01f3f57e
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-13T08:03:37Z
  date_updated: 2022-05-13T08:03:37Z
  file_id: '11371'
  file_name: 2021_eLife_Pulgar.pdf
  file_size: 9010446
  relation: main_file
  success: 1
file_date_updated: 2022-05-13T08:03:37Z
fulldoi: https://doi.org/10.7554/eLife.66483
has_accepted_license: '1'
intvolume: '        10'
isi: 1
keyword:
- cell delamination
- apical constriction
- dragging
- mechanical forces
- collective 18 locomotion
- dorsal forerunner cells
- zebrafish
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260F1432-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742573'
  name: Interaction and feedback between cell mechanics and fate specification in
    vertebrate gastrulation
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Apical contacts stemming from incomplete delamination guide progenitor cell
  allocation through a dragging mechanism
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2021'
...
---
_id: '10327'
abstract:
- lang: eng
  text: Composite materials offer numerous advantages in a wide range of applications,
    including thermoelectrics. Here, semiconductor–metal composites are produced by
    just blending nanoparticles of a sulfide semiconductor obtained in aqueous solution
    and at room temperature with a metallic Cu powder. The obtained blend is annealed
    in a reducing atmosphere and afterward consolidated into dense polycrystalline
    pellets through spark plasma sintering (SPS). We observe that, during the annealing
    process, the presence of metallic copper activates a partial reduction of the
    PbS, resulting in the formation of PbS–Pb–CuxS composites. The presence of metallic
    lead during the SPS process habilitates the liquid-phase sintering of the composite.
    Besides, by comparing the transport properties of PbS, the PbS–Pb–CuxS composites,
    and PbS–CuxS composites obtained by blending PbS and CuxS nanoparticles, we demonstrate
    that the presence of metallic lead decisively contributes to a strong increase
    of the charge carrier concentration through spillover of charge carriers enabled
    by the low work function of lead. The increase in charge carrier concentration
    translates into much higher electrical conductivities and moderately lower Seebeck
    coefficients. These properties translate into power factors up to 2.1 mW m–1 K–2
    at ambient temperature, well above those of PbS and PbS + CuxS. Additionally,
    the presence of multiple phases in the final composite results in a notable decrease
    in the lattice thermal conductivity. Overall, the introduction of metallic copper
    in the initial blend results in a significant improvement of the thermoelectric
    performance of PbS, reaching a dimensionless thermoelectric figure of merit ZT
    = 1.1 at 750 K, which represents about a 400% increase over bare PbS. Besides,
    an average ZTave = 0.72 in the temperature range 320–773 K is demonstrated.
acknowledgement: This work was supported by the European Regional Development Funds.
  M.L., Y.Z., X.H., and K.X. thank the China Scholarship Council for scholarship support.
  M. I. has been financially supported by IST Austria and the Werner Siemens Foundation.
  Y.L. acknowledges funding from the European Union’s Horizon 2020 research and innovation
  program under the Marie Sklodowska-Curie grant agreement No. 754411. J.L. is a Serra
  Húnter fellow and is grateful to ICREA Academia program and projects MICINN/FEDER
  RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2 acknowledges funding from Generalitat
  de Catalunya 2017 SGR 327 and the Spanish MINECO project NANOGEN (PID2020-116093RB-C43).
  ICN2 was supported by the Severo Ochoa program from Spanish MINECO (grant no. SEV-2017-0706)
  and was funded by the CERCA Programme/Generalitat de Catalunya. X.H. thanks China
  Scholarship Council for scholarship support (201804910551). Part of the present
  work was performed in the framework of Universitat Autònoma de Barcelona Materials
  Science Ph.D. program.
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Xu
  full_name: Han, Xu
  last_name: Han
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Mehran
  full_name: Nabahat, Mehran
  last_name: Nabahat
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Jordi
  full_name: Llorca, Jordi
  last_name: Llorca
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Li M, Liu Y, Zhang Y, et al. PbS–Pb–CuxS composites for thermoelectric application.
    <i>ACS Applied Materials and Interfaces</i>. 2021;13(43):51373–51382. doi:<a href="https://doi.org/10.1021/acsami.1c15609">10.1021/acsami.1c15609</a>
  apa: Li, M., Liu, Y., Zhang, Y., Han, X., Xiao, K., Nabahat, M., … Cabot, A. (2021).
    PbS–Pb–CuxS composites for thermoelectric application. <i>ACS Applied Materials
    and Interfaces</i>. American Chemical Society. <a href="https://doi.org/10.1021/acsami.1c15609">https://doi.org/10.1021/acsami.1c15609</a>
  chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ke Xiao, Mehran Nabahat, Jordi Arbiol,
    Jordi Llorca, Maria Ibáñez, and Andreu Cabot. “PbS–Pb–CuxS Composites for Thermoelectric
    Application.” <i>ACS Applied Materials and Interfaces</i>. American Chemical Society,
    2021. <a href="https://doi.org/10.1021/acsami.1c15609">https://doi.org/10.1021/acsami.1c15609</a>.
  ieee: M. Li <i>et al.</i>, “PbS–Pb–CuxS composites for thermoelectric application,”
    <i>ACS Applied Materials and Interfaces</i>, vol. 13, no. 43. American Chemical
    Society, pp. 51373–51382, 2021.
  ista: Li M, Liu Y, Zhang Y, Han X, Xiao K, Nabahat M, Arbiol J, Llorca J, Ibáñez
    M, Cabot A. 2021. PbS–Pb–CuxS composites for thermoelectric application. ACS Applied
    Materials and Interfaces. 13(43), 51373–51382.
  mla: Li, Mengyao, et al. “PbS–Pb–CuxS Composites for Thermoelectric Application.”
    <i>ACS Applied Materials and Interfaces</i>, vol. 13, no. 43, American Chemical
    Society, 2021, pp. 51373–51382, doi:<a href="https://doi.org/10.1021/acsami.1c15609">10.1021/acsami.1c15609</a>.
  short: M. Li, Y. Liu, Y. Zhang, X. Han, K. Xiao, M. Nabahat, J. Arbiol, J. Llorca,
    M. Ibáñez, A. Cabot, ACS Applied Materials and Interfaces 13 (2021) 51373–51382.
corr_author: '1'
das_tickbox: '1'
date_created: 2021-11-21T23:01:30Z
date_published: 2021-10-19T00:00:00Z
date_updated: 2026-07-06T12:15:05Z
day: '19'
department:
- _id: MaIb
doi: 10.1021/acsami.1c15609
ec_funded: 1
external_id:
  isi:
  - '000715852100070'
  pmid:
  - '34665616'
fulldoi: https://doi.org/10.1021/acsami.1c15609
intvolume: '        13'
isi: 1
issue: '43'
keyword:
- CuxS
- PbS
- energy conversion
- nanocomposite
- nanoparticle
- solution synthesis
- thermoelectric
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://upcommons.upc.edu/bitstream/2117/363528/1/Pb%20mengyao.pdf
month: '10'
oa: 1
oa_version: Submitted Version
page: 51373–51382
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: ACS Applied Materials and Interfaces
publication_identifier:
  eissn:
  - 1944-8252
  issn:
  - 1944-8244
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: PbS–Pb–CuxS composites for thermoelectric application
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2021'
...
---
_id: '9235'
abstract:
- lang: eng
  text: Cu2–xS has become one of the most promising thermoelectric materials for application
    in the middle-high temperature range. Its advantages include the abundance, low
    cost, and safety of its elements and a high performance at relatively elevated
    temperatures. However, stability issues limit its operation current and temperature,
    thus calling for the optimization of the material performance in the middle temperature
    range. Here, we present a synthetic protocol for large scale production of covellite
    CuS nanoparticles at ambient temperature and atmosphere, and using water as a
    solvent. The crystal phase and stoichiometry of the particles are afterward tuned
    through an annealing process at a moderate temperature under inert or reducing
    atmosphere. While annealing under argon results in Cu1.8S nanopowder with a rhombohedral
    crystal phase, annealing in an atmosphere containing hydrogen leads to tetragonal
    Cu1.96S. High temperature X-ray diffraction analysis shows the material annealed
    in argon to transform to the cubic phase at ca. 400 K, while the material annealed
    in the presence of hydrogen undergoes two phase transitions, first to hexagonal
    and then to the cubic structure. The annealing atmosphere, temperature, and time
    allow adjustment of the density of copper vacancies and thus tuning of the charge
    carrier concentration and material transport properties. In this direction, the
    material annealed under Ar is characterized by higher electrical conductivities
    but lower Seebeck coefficients than the material annealed in the presence of hydrogen.
    By optimizing the charge carrier concentration through the annealing time, Cu2–xS
    with record figures of merit in the middle temperature range, up to 1.41 at 710
    K, is obtained. We finally demonstrate that this strategy, based on a low-cost
    and scalable solution synthesis process, is also suitable for the production of
    high performance Cu2–xS layers using high throughput and cost-effective printing
    technologies.
acknowledgement: This work was supported by the European Regional Development Funds.
  M.Y.L., X.H., T.Z., and K.X. thank the China Scholarship Council for scholarship
  support. M.I. acknowledges financial support from IST Austria. J.L. acknowledges
  support from the National Natural Science Foundation of China (No. 22008091), the
  funding for scientific research startup of Jiangsu University (No. 19JDG044), and
  Jiangsu Provincial Program for High-Level Innovative and Entrepreneurial Talents
  Introduction. J.L. is a Serra Húnter fellow and is grateful to the ICREA Academia
  program and projects MICINN/FEDER RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2
  acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish
  MINECO ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from Spanish
  MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat
  de Catalunya. Part of the present work has been performed in the framework of Universitat
  Autònoma de Barcelona Materials Science PhD program. T.Z. has received funding from
  the CSC-UAB PhD scholarship program.
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Xu
  full_name: Han, Xu
  last_name: Han
- first_name: Ting
  full_name: Zhang, Ting
  last_name: Zhang
- first_name: Yong
  full_name: Zuo, Yong
  last_name: Zuo
- first_name: Chenyang
  full_name: Xie, Chenyang
  last_name: Xie
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Jordi
  full_name: Llorca, Jordi
  last_name: Llorca
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Junfeng
  full_name: Liu, Junfeng
  last_name: Liu
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Li M, Liu Y, Zhang Y, et al. Effect of the annealing atmosphere on crystal
    phase and thermoelectric properties of copper sulfide. <i>ACS Nano</i>. 2021;15(3):4967–4978.
    doi:<a href="https://doi.org/10.1021/acsnano.0c09866">10.1021/acsnano.0c09866</a>
  apa: Li, M., Liu, Y., Zhang, Y., Han, X., Zhang, T., Zuo, Y., … Cabot, A. (2021).
    Effect of the annealing atmosphere on crystal phase and thermoelectric properties
    of copper sulfide. <i>ACS Nano</i>. American Chemical Society. <a href="https://doi.org/10.1021/acsnano.0c09866">https://doi.org/10.1021/acsnano.0c09866</a>
  chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ting Zhang, Yong Zuo, Chenyang Xie,
    et al. “Effect of the Annealing Atmosphere on Crystal Phase and Thermoelectric
    Properties of Copper Sulfide.” <i>ACS Nano</i>. American Chemical Society, 2021.
    <a href="https://doi.org/10.1021/acsnano.0c09866">https://doi.org/10.1021/acsnano.0c09866</a>.
  ieee: M. Li <i>et al.</i>, “Effect of the annealing atmosphere on crystal phase
    and thermoelectric properties of copper sulfide,” <i>ACS Nano</i>, vol. 15, no.
    3. American Chemical Society, pp. 4967–4978, 2021.
  ista: Li M, Liu Y, Zhang Y, Han X, Zhang T, Zuo Y, Xie C, Xiao K, Arbiol J, Llorca
    J, Ibáñez M, Liu J, Cabot A. 2021. Effect of the annealing atmosphere on crystal
    phase and thermoelectric properties of copper sulfide. ACS Nano. 15(3), 4967–4978.
  mla: Li, Mengyao, et al. “Effect of the Annealing Atmosphere on Crystal Phase and
    Thermoelectric Properties of Copper Sulfide.” <i>ACS Nano</i>, vol. 15, no. 3,
    American Chemical Society, 2021, pp. 4967–4978, doi:<a href="https://doi.org/10.1021/acsnano.0c09866">10.1021/acsnano.0c09866</a>.
  short: M. Li, Y. Liu, Y. Zhang, X. Han, T. Zhang, Y. Zuo, C. Xie, K. Xiao, J. Arbiol,
    J. Llorca, M. Ibáñez, J. Liu, A. Cabot, ACS Nano 15 (2021) 4967–4978.
corr_author: '1'
das_tickbox: '1'
date_created: 2021-03-10T20:12:45Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2026-07-06T12:15:39Z
day: '01'
department:
- _id: MaIb
doi: 10.1021/acsnano.0c09866
external_id:
  isi:
  - '000634569100106'
  pmid:
  - '33645986'
fulldoi: https://doi.org/10.1021/acsnano.0c09866
intvolume: '        15'
isi: 1
issue: '3'
keyword:
- General Engineering
- General Physics and Astronomy
- General Materials Science
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://upcommons.upc.edu/bitstream/handle/2117/363528/Pb%20mengyao.pdf?sequence=1&isAllowed=y
month: '03'
oa: 1
oa_version: Submitted Version
page: 4967–4978
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
  issn:
  - 1936-0851
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of the annealing atmosphere on crystal phase and thermoelectric properties
  of copper sulfide
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2021'
...
---
_id: '10134'
abstract:
- lang: eng
  text: We investigate the effect of coupling between translational and internal degrees
    of freedom of composite quantum particles on their localization in a random potential.
    We show that entanglement between the two degrees of freedom weakens localization
    due to the upper bound imposed on the inverse participation ratio by purity of
    a quantum state. We perform numerical calculations for a two-particle system bound
    by a harmonic force in a 1D disordered lattice and a rigid rotor in a 2D disordered
    lattice. We illustrate that the coupling has a dramatic effect on localization
    properties, even with a small number of internal states participating in quantum
    dynamics.
acknowledgement: "We acknowledge helpful discussions with W. G. Unruh and A. Rodriguez.
  F. S. is supported by European Union’s\r\nHorizon 2020 research and innovation programme
  under the Marie Skłodowska-Curie Grant No. 754411. M. L. acknowledges support by
  the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). W. H. Z.
  is\r\nsupported by Department of Energy under the Los\r\nAlamos National Laboratory
  LDRD Program as well as by the U.S. Department of Energy, Office of Science, Basic\r\nEnergy
  Sciences, Materials Sciences and Engineering Division, Condensed Matter Theory Program.
  R. V. K. is supported by NSERC of Canada.\r\n"
article_number: '160602'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Fumika
  full_name: Suzuki, Fumika
  id: 650C99FC-1079-11EA-A3C0-73AE3DDC885E
  last_name: Suzuki
  orcid: 0000-0003-4982-5970
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Wojciech H.
  full_name: Zurek, Wojciech H.
  last_name: Zurek
- first_name: Roman V.
  full_name: Krems, Roman V.
  last_name: Krems
citation:
  ama: Suzuki F, Lemeshko M, Zurek WH, Krems RV. Anderson localization of composite
    particles. <i>Physical Review Letters</i>. 2021;127(16). doi:<a href="https://doi.org/10.1103/physrevlett.127.160602">10.1103/physrevlett.127.160602</a>
  apa: Suzuki, F., Lemeshko, M., Zurek, W. H., &#38; Krems, R. V. (2021). Anderson
    localization of composite particles. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/physrevlett.127.160602">https://doi.org/10.1103/physrevlett.127.160602</a>
  chicago: Suzuki, Fumika, Mikhail Lemeshko, Wojciech H. Zurek, and Roman V. Krems.
    “Anderson Localization of Composite Particles.” <i>Physical Review Letters</i>.
    American Physical Society, 2021. <a href="https://doi.org/10.1103/physrevlett.127.160602">https://doi.org/10.1103/physrevlett.127.160602</a>.
  ieee: F. Suzuki, M. Lemeshko, W. H. Zurek, and R. V. Krems, “Anderson localization
    of composite particles,” <i>Physical Review Letters</i>, vol. 127, no. 16. American
    Physical Society, 2021.
  ista: Suzuki F, Lemeshko M, Zurek WH, Krems RV. 2021. Anderson localization of composite
    particles. Physical Review Letters. 127(16), 160602.
  mla: Suzuki, Fumika, et al. “Anderson Localization of Composite Particles.” <i>Physical
    Review Letters</i>, vol. 127, no. 16, 160602, American Physical Society, 2021,
    doi:<a href="https://doi.org/10.1103/physrevlett.127.160602">10.1103/physrevlett.127.160602</a>.
  short: F. Suzuki, M. Lemeshko, W.H. Zurek, R.V. Krems, Physical Review Letters 127
    (2021).
corr_author: '1'
das_tickbox: '1'
date_created: 2021-10-13T09:21:33Z
date_published: 2021-10-12T00:00:00Z
date_updated: 2026-07-06T12:22:26Z
day: '12'
department:
- _id: MiLe
doi: 10.1103/physrevlett.127.160602
ec_funded: 1
external_id:
  arxiv:
  - '2011.06279'
  isi:
  - '000707495700001'
fulldoi: https://doi.org/10.1103/physrevlett.127.160602
intvolume: '       127'
isi: 1
issue: '16'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2011.06279
month: '10'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anderson localization of composite particles
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 127
year: '2021'
...
---
_id: '8997'
abstract:
- lang: eng
  text: Phenomenological relations such as Ohm’s or Fourier’s law have a venerable
    history in physics but are still scarce in biology. This situation restrains predictive
    theory. Here, we build on bacterial “growth laws,” which capture physiological
    feedback between translation and cell growth, to construct a minimal biophysical
    model for the combined action of ribosome-targeting antibiotics. Our model predicts
    drug interactions like antagonism or synergy solely from responses to individual
    drugs. We provide analytical results for limiting cases, which agree well with
    numerical results. We systematically refine the model by including direct physical
    interactions of different antibiotics on the ribosome. In a limiting case, our
    model provides a mechanistic underpinning for recent predictions of higher-order
    interactions that were derived using entropy maximization. We further refine the
    model to include the effects of antibiotics that mimic starvation and the presence
    of resistance genes. We describe the impact of a starvation-mimicking antibiotic
    on drug interactions analytically and verify it experimentally. Our extended model
    suggests a change in the type of drug interaction that depends on the strength
    of resistance, which challenges established rescaling paradigms. We experimentally
    show that the presence of unregulated resistance genes can lead to altered drug
    interaction, which agrees with the prediction of the model. While minimal, the
    model is readily adaptable and opens the door to predicting interactions of second
    and higher-order in a broad range of biological systems.
acknowledgement: 'This work was supported in part by Tum stipend of Knafelj foundation
  (to B.K.), Austrian Science Fund (FWF) standalone grants P 27201-B22 (to T.B.) and
  P 28844(to G.T.), HFSP program Grant RGP0042/2013 (to T.B.), German Research Foundation
  (DFG) individual grant BO 3502/2-1 (to T.B.), and German Research Foundation (DFG)
  Collaborative Research Centre (SFB) 1310 (to T.B.). '
article_number: e1008529
article_processing_charge: Yes
article_type: original
author:
- first_name: Bor
  full_name: Kavcic, Bor
  id: 350F91D2-F248-11E8-B48F-1D18A9856A87
  last_name: Kavcic
  orcid: 0000-0001-6041-254X
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
- first_name: Tobias
  full_name: Bollenbach, Tobias
  id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
  last_name: Bollenbach
  orcid: 0000-0003-4398-476X
citation:
  ama: Kavcic B, Tkačik G, Bollenbach MT. Minimal biophysical model of combined antibiotic
    action. <i>PLOS Computational Biology</i>. 2021;17. doi:<a href="https://doi.org/10.1371/journal.pcbi.1008529">10.1371/journal.pcbi.1008529</a>
  apa: Kavcic, B., Tkačik, G., &#38; Bollenbach, M. T. (2021). Minimal biophysical
    model of combined antibiotic action. <i>PLOS Computational Biology</i>. Public
    Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1008529">https://doi.org/10.1371/journal.pcbi.1008529</a>
  chicago: Kavcic, Bor, Gašper Tkačik, and Mark Tobias Bollenbach. “Minimal Biophysical
    Model of Combined Antibiotic Action.” <i>PLOS Computational Biology</i>. Public
    Library of Science, 2021. <a href="https://doi.org/10.1371/journal.pcbi.1008529">https://doi.org/10.1371/journal.pcbi.1008529</a>.
  ieee: B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Minimal biophysical model of
    combined antibiotic action,” <i>PLOS Computational Biology</i>, vol. 17. Public
    Library of Science, 2021.
  ista: Kavcic B, Tkačik G, Bollenbach MT. 2021. Minimal biophysical model of combined
    antibiotic action. PLOS Computational Biology. 17, e1008529.
  mla: Kavcic, Bor, et al. “Minimal Biophysical Model of Combined Antibiotic Action.”
    <i>PLOS Computational Biology</i>, vol. 17, e1008529, Public Library of Science,
    2021, doi:<a href="https://doi.org/10.1371/journal.pcbi.1008529">10.1371/journal.pcbi.1008529</a>.
  short: B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
date_created: 2021-01-08T07:16:18Z
date_published: 2021-01-07T00:00:00Z
date_updated: 2026-07-06T12:44:35Z
day: '07'
ddc:
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department:
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doi: 10.1371/journal.pcbi.1008529
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keyword:
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- Molecular Biology
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title: Minimal biophysical model of combined antibiotic action
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