---
_id: '7619'
abstract:
- lang: eng
  text: Cell polarity is a fundamental feature of all multicellular organisms. In
    plants, prominent cell polarity markers are PIN auxin transporters crucial for
    plant development. To identify novel components involved in cell polarity establishment
    and maintenance, we carried out a forward genetic screening with PIN2:PIN1-HA;pin2
    Arabidopsis plants, which ectopically express predominantly basally localized
    PIN1 in the root epidermal cells leading to agravitropic root growth. From the
    screen, we identified the regulator of PIN polarity 12 (repp12) mutation, which
    restored gravitropic root growth and caused PIN1-HA polarity switch from basal
    to apical side of root epidermal cells. Complementation experiments established
    the repp12 causative mutation as an amino acid substitution in Aminophospholipid
    ATPase3 (ALA3), a phospholipid flippase with predicted function in vesicle formation.
    ala3 T-DNA mutants show defects in many auxin-regulated processes, in asymmetric
    auxin distribution and in PIN trafficking. Analysis of quintuple and sextuple
    mutants confirmed a crucial role of ALA proteins in regulating plant development
    and in PIN trafficking and polarity. Genetic and physical interaction studies
    revealed that ALA3 functions together with GNOM and BIG3 ARF GEFs. Taken together,
    our results identified ALA3 flippase as an important interactor and regulator
    of ARF GEF functioning in PIN polarity, trafficking and auxin-mediated development.
acknowledged_ssus:
- _id: Bio
article_processing_charge: No
article_type: original
author:
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Petra
  full_name: Marhavá, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavá
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Vendula
  full_name: Pukyšová, Vendula
  last_name: Pukyšová
- first_name: Adrià Sans
  full_name: Sánchez, Adrià Sans
  last_name: Sánchez
- first_name: Vivek Kumar
  full_name: Raxwal, Vivek Kumar
  last_name: Raxwal
- first_name: Christian S.
  full_name: Hardtke, Christian S.
  last_name: Hardtke
- first_name: Tomasz
  full_name: Nodzynski, Tomasz
  last_name: Nodzynski
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with
    ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin
    transporters. <i>The Plant Cell</i>. 2020;32(5):1644-1664. doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>
  apa: Zhang, X., Adamowski, M., Marhavá, P., Tan, S., Zhang, Y., Rodriguez Solovey,
    L., … Friml, J. (2020). Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters. <i>The
    Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>
  chicago: Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang,
    Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate
    with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN
    Auxin Transporters.” <i>The Plant Cell</i>. American Society of Plant Biologists,
    2020. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>.
  ieee: X. Zhang <i>et al.</i>, “Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters,” <i>The
    Plant Cell</i>, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664,
    2020.
  ista: Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka
    M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020.
    Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the
    trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.
  mla: Zhang, Xixi, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange
    Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” <i>The
    Plant Cell</i>, vol. 32, no. 5, American Society of Plant Biologists, 2020, pp.
    1644–64, doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>.
  short: X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey,
    M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski,
    J. Friml, The Plant Cell 32 (2020) 1644–1664.
corr_author: '1'
date_created: 2020-03-28T07:39:22Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2026-06-18T19:24:19Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1105/tpc.19.00869
ec_funded: 1
external_id:
  isi:
  - '000545741500030'
  pmid:
  - '32193204'
intvolume: '        32'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1105/tpc.19.00869
month: '05'
oa: 1
oa_version: Published Version
page: 1644-1664
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: The Plant Cell
publication_identifier:
  eissn:
  - 1532-298X
  issn:
  - 1040-4651
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate
  the trafficking and polarity of PIN auxin transporters
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2020'
...
---
_id: '7622'
abstract:
- lang: eng
  text: The International Young Physicists' Tournament (IYPT) continued in 2018 in
    Beijing, China and 2019 in Warsaw, Poland with its 31st and 32nd editions. The
    IYPT is a modern scientific competition for teams of high school students, also
    known as the Physics World Cup. It involves long-term theoretical and experimental
    work focused on solving 17 publicly announced open-ended problems in teams of
    five. On top of that, teams have to present their solutions in front of other
    teams and a scientific jury, and get opposed and reviewed by their peers. Here
    we present a brief information about the competition with a specific focus on
    one of the IYPT 2018 tasks, the 'Ring Oiler'. This seemingly simple mechanical
    problem appeared to be of such a complexity that even the dozens of participating
    teams and jurying scientists were not able to solve all of its subtleties.
article_number: '034001'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Martin
  full_name: Plesch, Martin
  last_name: Plesch
- first_name: Samuel
  full_name: Plesník, Samuel
  last_name: Plesník
- first_name: Natalia
  full_name: Ruzickova, Natalia
  id: D2761128-D73D-11E9-A1BF-BA0DE6697425
  last_name: Ruzickova
citation:
  ama: Plesch M, Plesník S, Ruzickova N. The IYPT and the “Ring Oiler” problem. <i>European
    Journal of Physics</i>. 2020;41(3). doi:<a href="https://doi.org/10.1088/1361-6404/ab6414">10.1088/1361-6404/ab6414</a>
  apa: Plesch, M., Plesník, S., &#38; Ruzickova, N. (2020). The IYPT and the “Ring
    Oiler” problem. <i>European Journal of Physics</i>. IOP Publishing. <a href="https://doi.org/10.1088/1361-6404/ab6414">https://doi.org/10.1088/1361-6404/ab6414</a>
  chicago: Plesch, Martin, Samuel Plesník, and Natalia Ruzickova. “The IYPT and the
    ‘Ring Oiler’ Problem.” <i>European Journal of Physics</i>. IOP Publishing, 2020.
    <a href="https://doi.org/10.1088/1361-6404/ab6414">https://doi.org/10.1088/1361-6404/ab6414</a>.
  ieee: M. Plesch, S. Plesník, and N. Ruzickova, “The IYPT and the ‘Ring Oiler’ problem,”
    <i>European Journal of Physics</i>, vol. 41, no. 3. IOP Publishing, 2020.
  ista: Plesch M, Plesník S, Ruzickova N. 2020. The IYPT and the ‘Ring Oiler’ problem.
    European Journal of Physics. 41(3), 034001.
  mla: Plesch, Martin, et al. “The IYPT and the ‘Ring Oiler’ Problem.” <i>European
    Journal of Physics</i>, vol. 41, no. 3, 034001, IOP Publishing, 2020, doi:<a href="https://doi.org/10.1088/1361-6404/ab6414">10.1088/1361-6404/ab6414</a>.
  short: M. Plesch, S. Plesník, N. Ruzickova, European Journal of Physics 41 (2020).
date_created: 2020-03-31T11:25:04Z
date_published: 2020-02-24T00:00:00Z
date_updated: 2026-04-02T14:22:29Z
day: '24'
ddc:
- '530'
department:
- _id: FyKo
doi: 10.1088/1361-6404/ab6414
external_id:
  arxiv:
  - '1910.03290'
  isi:
  - '000537425400001'
file:
- access_level: open_access
  checksum: 47dda164e33b6c0c6c3ed14aad298376
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T08:53:53Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7641'
  file_name: 2020_EuropJourPhysics_Plesch.pdf
  file_size: 1533672
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        41'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: European Journal of Physics
publication_identifier:
  eissn:
  - 1361-6404
  issn:
  - 0143-0807
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: The IYPT and the 'Ring Oiler' problem
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 41
year: '2020'
...
---
_id: '7623'
abstract:
- lang: eng
  text: A two-dimensional mathematical model for cells migrating without adhesion
    capabilities is presented and analyzed. Cells are represented by their cortex,
    which is modeled as an elastic curve, subject to an internal pressure force. Net
    polymerization or depolymerization in the cortex is modeled via local addition
    or removal of material, driving a cortical flow. The model takes the form of a
    fully nonlinear degenerate parabolic system. An existence analysis is carried
    out by adapting ideas from the theory of gradient flows. Numerical simulations
    show that these simple rules can account for the behavior observed in experiments,
    suggesting a possible mechanical mechanism for adhesion-independent motility.
acknowledgement: This work has been supported by the Vienna Science and Technology
  Fund, Grant no. LS13-029. G.J. and C.S. also acknowledge support by the Austrian
  Science Fund, Grants no. W1245, F 65, and W1261, as well as by the Fondation Sciences
  Mathématiques de Paris, and by Paris-Sciences-et-Lettres.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Gaspard
  full_name: Jankowiak, Gaspard
  last_name: Jankowiak
- first_name: Diane
  full_name: Peurichard, Diane
  last_name: Peurichard
- first_name: Anne
  full_name: Reversat, Anne
  id: 35B76592-F248-11E8-B48F-1D18A9856A87
  last_name: Reversat
  orcid: 0000-0003-0666-8928
- first_name: Christian
  full_name: Schmeiser, Christian
  last_name: Schmeiser
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. Modeling adhesion-independent
    cell migration. <i>Mathematical Models and Methods in Applied Sciences</i>. 2020;30(3):513-537.
    doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>
  apa: Jankowiak, G., Peurichard, D., Reversat, A., Schmeiser, C., &#38; Sixt, M.
    K. (2020). Modeling adhesion-independent cell migration. <i>Mathematical Models
    and Methods in Applied Sciences</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>
  chicago: Jankowiak, Gaspard, Diane Peurichard, Anne Reversat, Christian Schmeiser,
    and Michael K Sixt. “Modeling Adhesion-Independent Cell Migration.” <i>Mathematical
    Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2020.
    <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>.
  ieee: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, and M. K. Sixt, “Modeling
    adhesion-independent cell migration,” <i>Mathematical Models and Methods in Applied
    Sciences</i>, vol. 30, no. 3. World Scientific Publishing, pp. 513–537, 2020.
  ista: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. 2020. Modeling
    adhesion-independent cell migration. Mathematical Models and Methods in Applied
    Sciences. 30(3), 513–537.
  mla: Jankowiak, Gaspard, et al. “Modeling Adhesion-Independent Cell Migration.”
    <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 30, no. 3, World
    Scientific Publishing, 2020, pp. 513–37, doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>.
  short: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, M.K. Sixt, Mathematical
    Models and Methods in Applied Sciences 30 (2020) 513–537.
date_created: 2020-03-31T11:25:05Z
date_published: 2020-03-18T00:00:00Z
date_updated: 2026-04-16T09:35:31Z
day: '18'
department:
- _id: MiSi
doi: 10.1142/S021820252050013X
external_id:
  arxiv:
  - '1903.09426'
  isi:
  - '000525349900003'
intvolume: '        30'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1903.09426
month: '03'
oa: 1
oa_version: Preprint
page: 513-537
project:
- _id: 25AD6156-B435-11E9-9278-68D0E5697425
  grant_number: LS13-029
  name: Modeling of Polarization and Motility of Leukocytes in Three-Dimensional Environments
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
  issn:
  - 0218-2025
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modeling adhesion-independent cell migration
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 30
year: '2020'
...
---
OA_place: publisher
_id: '7629'
abstract:
- lang: eng
  text: "This thesis is based on three main topics: In the first part, we study convergence
    of discrete gradient flow structures associated with regular finite-volume discretisations
    of Fokker-Planck equations. We show evolutionary I convergence of the discrete
    gradient flows to the L2-Wasserstein gradient flow corresponding to the solution
    of a Fokker-Planck\r\nequation in arbitrary dimension d >= 1. Along the argument,
    we prove Mosco- and I-convergence results for discrete energy functionals, which
    are of independent interest for convergence of equivalent gradient flow structures
    in Hilbert spaces.\r\nThe second part investigates L2-Wasserstein flows on metric
    graph. The starting point is a Benamou-Brenier formula for the L2-Wasserstein
    distance, which is proved via a regularisation scheme for solutions of the continuity
    equation, adapted to the peculiar geometric structure of metric graphs. Based
    on those results, we show that the L2-Wasserstein space over a metric graph admits
    a gradient flow which may be identified as a solution of a Fokker-Planck equation.\r\nIn
    the third part, we focus again on the discrete gradient flows, already encountered
    in the first part. We propose a variational structure which extends the gradient
    flow structure to Markov chains violating the detailed-balance conditions. Using
    this structure, we characterise contraction estimates for the discrete heat flow
    in terms of convexity of\r\ncorresponding path-dependent energy functionals. In
    addition, we use this approach to derive several functional inequalities for said
    functionals."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Dominik L
  full_name: Forkert, Dominik L
  id: 35C79D68-F248-11E8-B48F-1D18A9856A87
  last_name: Forkert
citation:
  ama: Forkert DL. Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains. 2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:7629">10.15479/AT:ISTA:7629</a>
  apa: Forkert, D. L. (2020). <i>Gradient flows in spaces of probability measures
    for finite-volume schemes, metric graphs and non-reversible Markov chains</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:7629">https://doi.org/10.15479/AT:ISTA:7629</a>
  chicago: Forkert, Dominik L. “Gradient Flows in Spaces of Probability Measures for
    Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains.” Institute
    of Science and Technology Austria, 2020. <a href="https://doi.org/10.15479/AT:ISTA:7629">https://doi.org/10.15479/AT:ISTA:7629</a>.
  ieee: D. L. Forkert, “Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains,” Institute of Science
    and Technology Austria, 2020.
  ista: Forkert DL. 2020. Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains. Institute of Science
    and Technology Austria.
  mla: Forkert, Dominik L. <i>Gradient Flows in Spaces of Probability Measures for
    Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains</i>. Institute
    of Science and Technology Austria, 2020, doi:<a href="https://doi.org/10.15479/AT:ISTA:7629">10.15479/AT:ISTA:7629</a>.
  short: D.L. Forkert, Gradient Flows in Spaces of Probability Measures for Finite-Volume
    Schemes, Metric Graphs and Non-Reversible Markov Chains, Institute of Science
    and Technology Austria, 2020.
corr_author: '1'
date_created: 2020-04-02T06:40:23Z
date_published: 2020-03-31T00:00:00Z
date_updated: 2026-04-08T07:22:00Z
day: '31'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: JaMa
doi: 10.15479/AT:ISTA:7629
ec_funded: 1
file:
- access_level: open_access
  checksum: c814a1a6195269ca6fe48b0dca45ae8a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T10:47:59Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7657'
  file_name: Thesis_Forkert_PDFA.pdf
  file_size: 3297129
  relation: main_file
- access_level: closed
  checksum: ceafb53f923d1b5bdf14b2b0f22e4a81
  content_type: application/x-zip-compressed
  creator: dernst
  date_created: 2020-04-14T10:47:59Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7658'
  file_name: Thesis_Forkert_source.zip
  file_size: 1063908
  relation: source_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '154'
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
title: Gradient flows in spaces of probability measures for finite-volume schemes,
  metric graphs and non-reversible Markov chains
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2020'
...
---
_id: '7632'
abstract:
- lang: eng
  text: The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical
    network supporting goal-directed behaviour, with functions including sensorimotor
    transformations and decision making. In primates, this network links performed
    and observed actions via mirror neurons, which fire both when individuals perform
    an action and when they observe the same action performed by a conspecific. Mirror
    neurons are believed to be important for social learning, but it is not known
    whether mirror-like neurons occur in similar networks in other social species,
    such as rodents, or if they can be measured in such models using paradigms where
    observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in
    PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching
    and wheel-running tasks, and found that cell populations in both areas robustly
    encoded several naturalistic behaviours. However, neural responses to the same
    set of observed actions were absent, although we verified that observer mice were
    attentive to performers and that PPC neurons responded reliably to visual cues.
    Statistical modelling also indicated that executed actions outperformed observed
    actions in predicting neural responses. These results raise the possibility that
    sensorimotor action recognition in rodents could take place outside of the parieto-frontal
    circuit, and underscore that detecting socially-driven neural coding depends critically
    on the species and behavioural paradigm used.
article_number: '5559'
article_processing_charge: No
article_type: original
author:
- first_name: Tuce
  full_name: Tombaz, Tuce
  last_name: Tombaz
- first_name: Benjamin A.
  full_name: Dunn, Benjamin A.
  last_name: Dunn
- first_name: Karoline
  full_name: Hovde, Karoline
  last_name: Hovde
- first_name: Ryan J
  full_name: Cubero, Ryan J
  id: 850B2E12-9CD4-11E9-837F-E719E6697425
  last_name: Cubero
  orcid: 0000-0003-0002-1867
- first_name: Bartul
  full_name: Mimica, Bartul
  last_name: Mimica
- first_name: Pranav
  full_name: Mamidanna, Pranav
  last_name: Mamidanna
- first_name: Yasser
  full_name: Roudi, Yasser
  last_name: Roudi
- first_name: Jonathan R.
  full_name: Whitlock, Jonathan R.
  last_name: Whitlock
citation:
  ama: Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal
    network. <i>Scientific reports</i>. 2020;10(1). doi:<a href="https://doi.org/10.1038/s41598-020-62089-6">10.1038/s41598-020-62089-6</a>
  apa: Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P.,
    … Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network.
    <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-020-62089-6">https://doi.org/10.1038/s41598-020-62089-6</a>
  chicago: Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica,
    Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation
    in the Mouse Parieto-Frontal Network.” <i>Scientific Reports</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1038/s41598-020-62089-6">https://doi.org/10.1038/s41598-020-62089-6</a>.
  ieee: T. Tombaz <i>et al.</i>, “Action representation in the mouse parieto-frontal
    network,” <i>Scientific reports</i>, vol. 10, no. 1. Springer Nature, 2020.
  ista: Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock
    JR. 2020. Action representation in the mouse parieto-frontal network. Scientific
    reports. 10(1), 5559.
  mla: Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.”
    <i>Scientific Reports</i>, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:<a
    href="https://doi.org/10.1038/s41598-020-62089-6">10.1038/s41598-020-62089-6</a>.
  short: T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y.
    Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
date_created: 2020-04-05T22:00:47Z
date_published: 2020-03-27T00:00:00Z
date_updated: 2026-04-02T14:23:52Z
day: '27'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1038/s41598-020-62089-6
external_id:
  isi:
  - '000560406800007'
file:
- access_level: open_access
  checksum: e6cfaaaf7986532132934400038b824a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T10:44:23Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7644'
  file_name: 2020_ScientificReports_Tombaz.pdf
  file_size: 2621249
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Scientific reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Action representation in the mouse parieto-frontal network
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 10
year: '2020'
...
---
_id: '7634'
abstract:
- lang: eng
  text: Assemblies of colloidal semiconductor nanocrystals (NCs) in the form of thin
    solid films leverage the size-dependent quantum confinement properties and the
    wet chemical methods vital for the development of the emerging solution-processable
    electronics, photonics, and optoelectronics technologies. The ability to control
    the charge carrier transport in the colloidal NC assemblies is fundamental for
    altering their electronic and optical properties for the desired applications.
    Here we demonstrate a strategy to render the solids of narrow-bandgap NC assemblies
    exclusively electron-transporting by creating a type-II heterojunction via shelling.
    Electronic transport of molecularly cross-linked PbTe@PbS core@shell NC assemblies
    is measured using both a conventional solid gate transistor and an electric-double-layer
    transistor, as well as compared with those of core-only PbTe NCs. In contrast
    to the ambipolar characteristics demonstrated by many narrow-bandgap NCs, the
    core@shell NCs exhibit exclusive n-type transport, i.e., drastically suppressed
    contribution of holes to the overall transport. The PbS shell that forms a type-II
    heterojunction assists the selective carrier transport by heavy doping of electrons
    into the PbTe-core conduction level and simultaneously strongly localizes the
    holes within the NC core valence level. This strongly enhanced n-type transport
    makes these core@shell NCs suitable for applications where ambipolar characteristics
    should be actively suppressed, in particular, for thermoelectric and electron-transporting
    layers in photovoltaic devices.
acknowledgement: This work is partly supported by Grants-in-Aid for Scientific Research
  by Young Scientist A (KAKENHI Wakate-A) No. JP17H04802, Grants-in-Aid for Scientific
  Research No. JP19H05602 from the Japan Society for the Promotion of Science, and
  RIKEN Incentive Research Grant (Shoreikadai) 2016. M.V.K. and M.I. acknowledge financial
  support from the European Union (EU) via FP7 ERC Starting Grant 2012 (Project NANOSOLID,
  GA No. 306733) and ETH Zurich via ETH career seed grant (SEED-18 16-2). Support
  from Cambridge Display Technology, Ltd., and Sumitomo Chemical Company is also acknowledged.
  We thank Mrs. T. Kikitsu and Dr. D. Hashizume (RIKEN-CEMS) for access to the transmission
  electron microscope facility.
article_processing_charge: No
article_type: original
author:
- first_name: Retno
  full_name: Miranti, Retno
  last_name: Miranti
- first_name: Daiki
  full_name: Shin, Daiki
  last_name: Shin
- first_name: Ricky Dwi
  full_name: Septianto, Ricky Dwi
  last_name: Septianto
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Maksym V.
  full_name: Kovalenko, Maksym V.
  last_name: Kovalenko
- first_name: Nobuhiro
  full_name: Matsushita, Nobuhiro
  last_name: Matsushita
- first_name: Yoshihiro
  full_name: Iwasa, Yoshihiro
  last_name: Iwasa
- first_name: Satria Zulkarnaen
  full_name: Bisri, Satria Zulkarnaen
  last_name: Bisri
citation:
  ama: Miranti R, Shin D, Septianto RD, et al. Exclusive electron transport in Core@Shell
    PbTe@PbS colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. 2020;14(3):3242-3250.
    doi:<a href="https://doi.org/10.1021/acsnano.9b08687">10.1021/acsnano.9b08687</a>
  apa: Miranti, R., Shin, D., Septianto, R. D., Ibáñez, M., Kovalenko, M. V., Matsushita,
    N., … Bisri, S. Z. (2020). Exclusive electron transport in Core@Shell PbTe@PbS
    colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/acsnano.9b08687">https://doi.org/10.1021/acsnano.9b08687</a>
  chicago: Miranti, Retno, Daiki Shin, Ricky Dwi Septianto, Maria Ibáñez, Maksym V.
    Kovalenko, Nobuhiro Matsushita, Yoshihiro Iwasa, and Satria Zulkarnaen Bisri.
    “Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal
    Assemblies.” <i>ACS Nano</i>. American Chemical Society, 2020. <a href="https://doi.org/10.1021/acsnano.9b08687">https://doi.org/10.1021/acsnano.9b08687</a>.
  ieee: R. Miranti <i>et al.</i>, “Exclusive electron transport in Core@Shell PbTe@PbS
    colloidal semiconductor nanocrystal assemblies,” <i>ACS Nano</i>, vol. 14, no.
    3. American Chemical Society, pp. 3242–3250, 2020.
  ista: Miranti R, Shin D, Septianto RD, Ibáñez M, Kovalenko MV, Matsushita N, Iwasa
    Y, Bisri SZ. 2020. Exclusive electron transport in Core@Shell PbTe@PbS colloidal
    semiconductor nanocrystal assemblies. ACS Nano. 14(3), 3242–3250.
  mla: Miranti, Retno, et al. “Exclusive Electron Transport in Core@Shell PbTe@PbS
    Colloidal Semiconductor Nanocrystal Assemblies.” <i>ACS Nano</i>, vol. 14, no.
    3, American Chemical Society, 2020, pp. 3242–50, doi:<a href="https://doi.org/10.1021/acsnano.9b08687">10.1021/acsnano.9b08687</a>.
  short: R. Miranti, D. Shin, R.D. Septianto, M. Ibáñez, M.V. Kovalenko, N. Matsushita,
    Y. Iwasa, S.Z. Bisri, ACS Nano 14 (2020) 3242–3250.
date_created: 2020-04-05T22:00:48Z
date_published: 2020-03-24T00:00:00Z
date_updated: 2023-08-18T10:25:40Z
day: '24'
department:
- _id: MaIb
doi: 10.1021/acsnano.9b08687
external_id:
  isi:
  - '000526301400057'
  pmid:
  - '32073817'
intvolume: '        14'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 3242-3250
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor
  nanocrystal assemblies
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2020'
...
---
OA_place: publisher
OA_type: free access
_id: '7635'
abstract:
- lang: eng
  text: Concurrent programming can be notoriously complex and error-prone. Programming
    bugs can arise from a variety of sources, such as operation re-reordering, or
    incomplete understanding of the memory model. A variety of formal and model checking
    methods have been developed to address this fundamental difficulty. While technically
    interesting, existing academic methods are still hard to apply to the large codebases
    typical of industrial deployments, which limits their practical impact.
article_processing_charge: No
author:
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
- first_name: Mariia
  full_name: Sokolova, Mariia
  id: 26217AE4-77FF-11EA-8101-AD24D49E41F4
  last_name: Sokolova
- first_name: Alexander
  full_name: Fedorov, Alexander
  last_name: Fedorov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Dmitry
  full_name: Tsitelov, Dmitry
  last_name: Tsitelov
citation:
  ama: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency
    on the JVM with Lincheck. In: <i>Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming</i>. Association for Computing Machinery;
    2020:423-424. doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>'
  apa: 'Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., &#38; Tsitelov, D.
    (2020). Testing concurrency on the JVM with Lincheck. In <i>Proceedings of the
    ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i> (pp.
    423–424). San Diego, CA, United States: Association for Computing Machinery. <a
    href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>'
  chicago: Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh,
    and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    423–24. Association for Computing Machinery, 2020. <a href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>.
  ieee: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing
    concurrency on the JVM with Lincheck,” in <i>Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming</i>, San Diego, CA, United
    States, 2020, pp. 423–424.
  ista: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency
    on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming. PPOPP: Principles and Practice of Parallel
    Programming, 423–424.'
  mla: Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    Association for Computing Machinery, 2020, pp. 423–24, doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>.
  short: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
    Association for Computing Machinery, 2020, pp. 423–424.
conference:
  end_date: 2020-02-26
  location: San Diego, CA, United States
  name: 'PPOPP: Principles and Practice of Parallel Programming'
  start_date: 2020-02-22
date_created: 2020-04-05T22:00:48Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2026-06-18T19:24:47Z
day: '19'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.1145/3332466.3374503
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3332466.3374503
month: '02'
oa: 1
oa_version: Published Version
page: 423-424
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
  Parallel Programming
publication_identifier:
  isbn:
  - '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing concurrency on the JVM with Lincheck
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7637'
abstract:
- lang: eng
  text: The evolution of finitely many particles obeying Langevin dynamics is described
    by Dean–Kawasaki equations, a class of stochastic equations featuring a non-Lipschitz
    multiplicative noise in divergence form. We derive a regularised Dean–Kawasaki
    model based on second order Langevin dynamics by analysing a system of particles
    interacting via a pairwise potential. Key tools of our analysis are the propagation
    of chaos and Simon's compactness criterion. The model we obtain is a small-noise
    stochastic perturbation of the undamped McKean–Vlasov equation. We also provide
    a high-probability result for existence and uniqueness for our model.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Federico
  full_name: Cornalba, Federico
  id: 2CEB641C-A400-11E9-A717-D712E6697425
  last_name: Cornalba
  orcid: 0000-0002-6269-5149
- first_name: Tony
  full_name: Shardlow, Tony
  last_name: Shardlow
- first_name: Johannes
  full_name: Zimmer, Johannes
  last_name: Zimmer
citation:
  ama: Cornalba F, Shardlow T, Zimmer J. From weakly interacting particles to a regularised
    Dean-Kawasaki model. <i>Nonlinearity</i>. 2020;33(2):864-891. doi:<a href="https://doi.org/10.1088/1361-6544/ab5174">10.1088/1361-6544/ab5174</a>
  apa: Cornalba, F., Shardlow, T., &#38; Zimmer, J. (2020). From weakly interacting
    particles to a regularised Dean-Kawasaki model. <i>Nonlinearity</i>. IOP Publishing.
    <a href="https://doi.org/10.1088/1361-6544/ab5174">https://doi.org/10.1088/1361-6544/ab5174</a>
  chicago: Cornalba, Federico, Tony Shardlow, and Johannes Zimmer. “From Weakly Interacting
    Particles to a Regularised Dean-Kawasaki Model.” <i>Nonlinearity</i>. IOP Publishing,
    2020. <a href="https://doi.org/10.1088/1361-6544/ab5174">https://doi.org/10.1088/1361-6544/ab5174</a>.
  ieee: F. Cornalba, T. Shardlow, and J. Zimmer, “From weakly interacting particles
    to a regularised Dean-Kawasaki model,” <i>Nonlinearity</i>, vol. 33, no. 2. IOP
    Publishing, pp. 864–891, 2020.
  ista: Cornalba F, Shardlow T, Zimmer J. 2020. From weakly interacting particles
    to a regularised Dean-Kawasaki model. Nonlinearity. 33(2), 864–891.
  mla: Cornalba, Federico, et al. “From Weakly Interacting Particles to a Regularised
    Dean-Kawasaki Model.” <i>Nonlinearity</i>, vol. 33, no. 2, IOP Publishing, 2020,
    pp. 864–91, doi:<a href="https://doi.org/10.1088/1361-6544/ab5174">10.1088/1361-6544/ab5174</a>.
  short: F. Cornalba, T. Shardlow, J. Zimmer, Nonlinearity 33 (2020) 864–891.
date_created: 2020-04-05T22:00:49Z
date_published: 2020-01-10T00:00:00Z
date_updated: 2026-04-02T14:26:08Z
day: '10'
department:
- _id: JuFi
doi: 10.1088/1361-6544/ab5174
external_id:
  arxiv:
  - '1811.06448'
  isi:
  - '000508175400001'
intvolume: '        33'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1811.06448
month: '01'
oa: 1
oa_version: Preprint
page: 864-891
publication: Nonlinearity
publication_identifier:
  eissn:
  - 1361-6544
  issn:
  - 0951-7715
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: From weakly interacting particles to a regularised Dean-Kawasaki model
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 33
year: '2020'
...
---
_id: '7638'
abstract:
- lang: eng
  text: Following on from our recent work, we investigate a stochastic approach to
    non-equilibrium quantum spin systems. We show how the method can be applied to
    a variety of physical observables and for different initial conditions. We provide
    exact formulae of broad applicability for the time-dependence of expectation values
    and correlation functions following a quantum quench in terms of averages over
    classical stochastic processes. We further explore the behavior of the classical
    stochastic variables in the presence of dynamical quantum phase transitions, including
    results for their distributions and correlation functions. We provide details
    on the numerical solution of the associated stochastic differential equations,
    and examine the growth of fluctuations in the classical description. We discuss
    the strengths and limitations of the current implementation of the stochastic
    approach and the potential for further development.
article_number: '013106'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefano
  full_name: De Nicola, Stefano
  id: 42832B76-F248-11E8-B48F-1D18A9856A87
  last_name: De Nicola
  orcid: 0000-0002-4842-6671
- first_name: B.
  full_name: Doyon, B.
  last_name: Doyon
- first_name: M. J.
  full_name: Bhaseen, M. J.
  last_name: Bhaseen
citation:
  ama: 'De Nicola S, Doyon B, Bhaseen MJ. Non-equilibrium quantum spin dynamics from
    classical stochastic processes. <i>Journal of Statistical Mechanics: Theory and
    Experiment</i>. 2020;2020(1). doi:<a href="https://doi.org/10.1088/1742-5468/ab6093">10.1088/1742-5468/ab6093</a>'
  apa: 'De Nicola, S., Doyon, B., &#38; Bhaseen, M. J. (2020). Non-equilibrium quantum
    spin dynamics from classical stochastic processes. <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>. IOP Publishing. <a href="https://doi.org/10.1088/1742-5468/ab6093">https://doi.org/10.1088/1742-5468/ab6093</a>'
  chicago: 'De Nicola, Stefano, B. Doyon, and M. J. Bhaseen. “Non-Equilibrium Quantum
    Spin Dynamics from Classical Stochastic Processes.” <i>Journal of Statistical
    Mechanics: Theory and Experiment</i>. IOP Publishing, 2020. <a href="https://doi.org/10.1088/1742-5468/ab6093">https://doi.org/10.1088/1742-5468/ab6093</a>.'
  ieee: 'S. De Nicola, B. Doyon, and M. J. Bhaseen, “Non-equilibrium quantum spin
    dynamics from classical stochastic processes,” <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>, vol. 2020, no. 1. IOP Publishing, 2020.'
  ista: 'De Nicola S, Doyon B, Bhaseen MJ. 2020. Non-equilibrium quantum spin dynamics
    from classical stochastic processes. Journal of Statistical Mechanics: Theory
    and Experiment. 2020(1), 013106.'
  mla: 'De Nicola, Stefano, et al. “Non-Equilibrium Quantum Spin Dynamics from Classical
    Stochastic Processes.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>,
    vol. 2020, no. 1, 013106, IOP Publishing, 2020, doi:<a href="https://doi.org/10.1088/1742-5468/ab6093">10.1088/1742-5468/ab6093</a>.'
  short: 'S. De Nicola, B. Doyon, M.J. Bhaseen, Journal of Statistical Mechanics:
    Theory and Experiment 2020 (2020).'
corr_author: '1'
date_created: 2020-04-05T22:00:50Z
date_published: 2020-01-22T00:00:00Z
date_updated: 2026-04-02T14:33:33Z
day: '22'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1088/1742-5468/ab6093
ec_funded: 1
external_id:
  arxiv:
  - '1909.13142'
  isi:
  - '000520187500001'
file:
- access_level: open_access
  checksum: 4030e683c15d30b7b4794ec7dc1b6537
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T13:15:49Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7648'
  file_name: 2020_JournStatisticalMech_DeNicola.pdf
  file_size: 3159026
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '      2020'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: 'Journal of Statistical Mechanics: Theory and Experiment'
publication_identifier:
  eissn:
  - 1742-5468
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-equilibrium quantum spin dynamics from classical stochastic processes
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 2020
year: '2020'
...
---
_id: '7646'
abstract:
- lang: eng
  text: In plant cells, environmental stressors promote changes in connectivity between
    the cortical ER and the PM. Although this process is tightly regulated in space
    and time, the molecular signals and structural components mediating these changes
    in inter-organelle communication are only starting to be characterized. In this
    report, we confirm the presence of a putative tethering complex containing the
    synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein
    1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow
    responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent
    rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+)
    rare earth elements (REEs). Although REEs are generally used as non-selective
    cation channel blockers at the PM, here we show that the slow internalization
    of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular
    signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the
    PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes.
    We propose that the observed EPCS rearrangements act as a slow adaptive response
    to sustained stress conditions, and that this process involves the accumulation
    of stress-specific phosphoinositides species at the PM.
article_processing_charge: No
article_type: original
author:
- first_name: E
  full_name: Lee, E
  last_name: Lee
- first_name: B
  full_name: Vila Nova Santana, B
  last_name: Vila Nova Santana
- first_name: E
  full_name: Samuels, E
  last_name: Samuels
- first_name: F
  full_name: Benitez-Fuente, F
  last_name: Benitez-Fuente
- first_name: E
  full_name: Corsi, E
  last_name: Corsi
- first_name: MA
  full_name: Botella, MA
  last_name: Botella
- first_name: J
  full_name: Perez-Sancho, J
  last_name: Perez-Sancho
- first_name: S
  full_name: Vanneste, S
  last_name: Vanneste
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: A
  full_name: Macho, A
  last_name: Macho
- first_name: A
  full_name: Alves Azevedo, A
  last_name: Alves Azevedo
- first_name: A
  full_name: Rosado, A
  last_name: Rosado
citation:
  ama: Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. 2020;71(14):3986–3998. doi:<a
    href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>
  apa: Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E.,
    Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a
    href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>
  chicago: Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella,
    J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and
    PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.”
    <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>.
  ieee: E. Lee <i>et al.</i>, “Rare earth elements induce cytoskeleton-dependent and
    PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,”
    <i>Journal of Experimental Botany</i>, vol. 71, no. 14. Oxford University Press,
    pp. 3986–3998, 2020.
  ista: Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella
    M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020.
    Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
    of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental
    Botany. 71(14), 3986–3998.
  mla: Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated
    Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal
    of Experimental Botany</i>, vol. 71, no. 14, Oxford University Press, 2020, pp.
    3986–3998, doi:<a href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>.
  short: E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M.
    Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A.
    Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.
date_created: 2020-04-06T10:57:08Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2024-10-21T06:02:26Z
day: '06'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/jxb/eraa138
external_id:
  isi:
  - '000553125400007'
  pmid:
  - '32179893'
file:
- access_level: open_access
  checksum: b06aaaa93dc41896da805fe4b75cf3a1
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  creator: dernst
  date_created: 2020-10-06T07:41:35Z
  date_updated: 2020-10-06T07:41:35Z
  file_id: '8613'
  file_name: 2020_JourExperimBotany_Lee.pdf
  file_size: 1916031
  relation: main_file
  success: 1
file_date_updated: 2020-10-06T07:41:35Z
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intvolume: '        71'
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language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 3986–3998
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
  eissn:
  - 1460-2431
  issn:
  - 0022-0957
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
  of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 71
year: '2020'
...
---
_id: '7650'
abstract:
- lang: eng
  text: We consider a dilute, homogeneous Bose gas at positive temperature. The system
    is investigated in the Gross–Pitaevskii limit, where the scattering length a is
    so small that the interaction energy is of the same order of magnitude as the
    spectral gap of the Laplacian, and for temperatures that are comparable to the
    critical temperature of the ideal gas. We show that the difference between the
    specific free energy of the interacting system and the one of the ideal gas is
    to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system
    and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show
    that the one-particle density matrix of any approximate minimizer of the Gibbs
    free energy functional is to leading order given by the one of the ideal gas.
    This in particular proves Bose–Einstein condensation with critical temperature
    given by the one of the ideal gas to leading order. One key ingredient of our
    proof is a novel use of the Gibbs variational principle that goes hand in hand
    with the c-number substitution.
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions.
  Financial support by the European Research Council (ERC) under the European Union’sHorizon
  2020 research and innovation programme (Grant Agreement No. 694227) is gratefully
  acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020
  research and innovation programme under the Marie Sklodowska-Curie Grant Agreement
  No. 836146.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Andreas
  full_name: Deuchert, Andreas
  id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
  last_name: Deuchert
  orcid: 0000-0003-3146-6746
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at
    positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. 2020;236(6):1217-1271.
    doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>
  apa: Deuchert, A., &#38; Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous
    Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>
  chicago: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>.
  ieee: A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature,” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.
  ista: Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6),
    1217–1271.
  mla: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>.
  short: A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236
    (2020) 1217–1271.
corr_author: '1'
date_created: 2020-04-08T15:18:03Z
date_published: 2020-03-09T00:00:00Z
date_updated: 2025-04-14T07:27:00Z
day: '09'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00205-020-01489-4
ec_funded: 1
external_id:
  arxiv:
  - '1901.11363'
  isi:
  - '000519415000001'
file:
- access_level: open_access
  checksum: b645fb64bfe95bbc05b3eea374109a9c
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T13:17:42Z
  date_updated: 2020-11-20T13:17:42Z
  file_id: '8785'
  file_name: 2020_ArchRatMechanicsAnalysis_Deuchert.pdf
  file_size: 704633
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T13:17:42Z
has_accepted_license: '1'
intvolume: '       236'
isi: 1
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1217-1271
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
  eissn:
  - 1432-0673
  issn:
  - 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 236
year: '2020'
...
---
_id: '7651'
abstract:
- lang: eng
  text: The growth of snail shells can be described by simple mathematical rules.
    Variation in a few parameters can explain much of the diversity of shell shapes
    seen in nature. However, empirical studies of gastropod shell shape variation
    typically use geometric morphometric approaches, which do not capture this growth
    pattern. We have developed a way to infer a set of developmentally descriptive
    shape parameters based on three-dimensional logarithmic helicospiral growth and
    using landmarks from two-dimensional shell images as input. We demonstrate the
    utility of this approach, and compare it to the geometric morphometric approach,
    using a large set of Littorina saxatilis shells in which locally adapted populations
    differ in shape. Our method can be modified easily to make it applicable to a
    wide range of shell forms, which would allow for investigations of the similarities
    and differences between and within many different species of gastropods.
article_number: '20190721'
article_processing_charge: No
article_type: original
author:
- first_name: J.
  full_name: Larsson, J.
  last_name: Larsson
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: S.
  full_name: Bengmark, S.
  last_name: Bengmark
- first_name: T.
  full_name: Lundh, T.
  last_name: Lundh
- first_name: R. K.
  full_name: Butlin, R. K.
  last_name: Butlin
citation:
  ama: Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. A developmentally descriptive
    method for quantifying shape in gastropod shells. <i>Journal of The Royal Society
    Interface</i>. 2020;17(163). doi:<a href="https://doi.org/10.1098/rsif.2019.0721">10.1098/rsif.2019.0721</a>
  apa: Larsson, J., Westram, A. M., Bengmark, S., Lundh, T., &#38; Butlin, R. K. (2020).
    A developmentally descriptive method for quantifying shape in gastropod shells.
    <i>Journal of The Royal Society Interface</i>. The Royal Society. <a href="https://doi.org/10.1098/rsif.2019.0721">https://doi.org/10.1098/rsif.2019.0721</a>
  chicago: Larsson, J., Anja M Westram, S. Bengmark, T. Lundh, and R. K. Butlin. “A
    Developmentally Descriptive Method for Quantifying Shape in Gastropod Shells.”
    <i>Journal of The Royal Society Interface</i>. The Royal Society, 2020. <a href="https://doi.org/10.1098/rsif.2019.0721">https://doi.org/10.1098/rsif.2019.0721</a>.
  ieee: J. Larsson, A. M. Westram, S. Bengmark, T. Lundh, and R. K. Butlin, “A developmentally
    descriptive method for quantifying shape in gastropod shells,” <i>Journal of The
    Royal Society Interface</i>, vol. 17, no. 163. The Royal Society, 2020.
  ista: Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. 2020. A developmentally
    descriptive method for quantifying shape in gastropod shells. Journal of The Royal
    Society Interface. 17(163), 20190721.
  mla: Larsson, J., et al. “A Developmentally Descriptive Method for Quantifying Shape
    in Gastropod Shells.” <i>Journal of The Royal Society Interface</i>, vol. 17,
    no. 163, 20190721, The Royal Society, 2020, doi:<a href="https://doi.org/10.1098/rsif.2019.0721">10.1098/rsif.2019.0721</a>.
  short: J. Larsson, A.M. Westram, S. Bengmark, T. Lundh, R.K. Butlin, Journal of
    The Royal Society Interface 17 (2020).
date_created: 2020-04-08T15:19:17Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2021-01-12T08:14:41Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1098/rsif.2019.0721
file:
- access_level: open_access
  checksum: 4eb102304402f5c56432516b84df86d6
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T12:31:16Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7660'
  file_name: 2020_JournRoyalSociety_Larsson.pdf
  file_size: 1556190
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        17'
issue: '163'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Journal of The Royal Society Interface
publication_identifier:
  eissn:
  - 1742-5662
  issn:
  - 1742-5689
publication_status: published
publisher: The Royal Society
quality_controlled: '1'
scopus_import: 1
status: public
title: A developmentally descriptive method for quantifying shape in gastropod shells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2020'
...
---
_id: '7656'
abstract:
- lang: eng
  text: 'We propose that correlations among neurons are generically strong enough
    to organize neural activity patterns into a discrete set of clusters, which can
    each be viewed as a population codeword. Our reasoning starts with the analysis
    of retinal ganglion cell data using maximum entropy models, showing that the population
    is robustly in a frustrated, marginally sub-critical, or glassy, state. This leads
    to an argument that neural populations in many other brain areas might share this
    structure. Next, we use latent variable models to show that this glassy state
    possesses well-defined clusters of neural activity. Clusters have three appealing
    properties: (i) clusters exhibit error correction, i.e., they are reproducibly
    elicited by the same stimulus despite variability at the level of constituent
    neurons; (ii) clusters encode qualitatively different visual features than their
    constituent neurons; and (iii) clusters can be learned by downstream neural circuits
    in an unsupervised fashion. We hypothesize that these properties give rise to
    a “learnable” neural code which the cortical hierarchy uses to extract increasingly
    complex features without supervision or reinforcement.'
article_number: '20'
article_processing_charge: No
article_type: original
author:
- first_name: Michael J.
  full_name: Berry, Michael J.
  last_name: Berry
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: 'Berry MJ, Tkačik G. Clustering of neural activity: A design principle for
    population codes. <i>Frontiers in Computational Neuroscience</i>. 2020;14. doi:<a
    href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>'
  apa: 'Berry, M. J., &#38; Tkačik, G. (2020). Clustering of neural activity: A design
    principle for population codes. <i>Frontiers in Computational Neuroscience</i>.
    Frontiers. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>'
  chicago: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity:
    A Design Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>.
    Frontiers, 2020. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>.'
  ieee: 'M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle
    for population codes,” <i>Frontiers in Computational Neuroscience</i>, vol. 14.
    Frontiers, 2020.'
  ista: 'Berry MJ, Tkačik G. 2020. Clustering of neural activity: A design principle
    for population codes. Frontiers in Computational Neuroscience. 14, 20.'
  mla: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design
    Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>,
    vol. 14, 20, Frontiers, 2020, doi:<a href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>.'
  short: M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020).
date_created: 2020-04-12T22:00:40Z
date_published: 2020-03-13T00:00:00Z
date_updated: 2026-04-16T08:28:50Z
day: '13'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.3389/fncom.2020.00020
external_id:
  isi:
  - '000525543200001'
  pmid:
  - '32231528'
file:
- access_level: open_access
  checksum: 2b1da23823eae9cedbb42d701945b61e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T12:20:39Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7659'
  file_name: 2020_Frontiers_Berry.pdf
  file_size: 4082937
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Computational Neuroscience
publication_identifier:
  eissn:
  - 1662-5188
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Clustering of neural activity: A design principle for population codes'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 14
year: '2020'
...
---
_id: '7663'
abstract:
- lang: eng
  text: Wood, as the most abundant carbon dioxide storing bioresource, is currently
    driven beyond its traditional use through creative innovations and nanotechnology.
    For many properties the micro- and nanostructure plays a crucial role and one
    key challenge is control and detection of chemical and physical processes in the
    confined microstructure and nanopores of the wooden cell wall. In this study,
    correlative Raman and atomic force microscopy show high potential for tracking
    in situ molecular rearrangement of wood polymers during compression. More water
    molecules (interpreted as wider cellulose microfibril distances) and disentangling
    of hemicellulose chains are detected in the opened cell wall regions, whereas
    an increase of lignin is revealed in the compressed areas. These results support
    a new more “loose” cell wall model based on flexible lignin nanodomains and advance
    our knowledge of the molecular reorganization during deformation of wood for optimized
    processing and utilization.
article_processing_charge: No
article_type: original
author:
- first_name: Martin
  full_name: Felhofer, Martin
  last_name: Felhofer
- first_name: Peter
  full_name: Bock, Peter
  last_name: Bock
- first_name: Adya
  full_name: Singh, Adya
  last_name: Singh
- first_name: Batirtze
  full_name: Prats Mateu, Batirtze
  id: 299FE892-F248-11E8-B48F-1D18A9856A87
  last_name: Prats Mateu
- first_name: Ronald
  full_name: Zirbs, Ronald
  last_name: Zirbs
- first_name: Notburga
  full_name: Gierlinger, Notburga
  last_name: Gierlinger
citation:
  ama: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. Wood deformation
    leads to rearrangement of molecules at the nanoscale. <i>Nano Letters</i>. 2020;20(4):2647-2653.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>
  apa: Felhofer, M., Bock, P., Singh, A., Prats Mateu, B., Zirbs, R., &#38; Gierlinger,
    N. (2020). Wood deformation leads to rearrangement of molecules at the nanoscale.
    <i>Nano Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>
  chicago: Felhofer, Martin, Peter Bock, Adya Singh, Batirtze Prats Mateu, Ronald
    Zirbs, and Notburga Gierlinger. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>. American Chemical Society, 2020. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>.
  ieee: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, and N. Gierlinger,
    “Wood deformation leads to rearrangement of molecules at the nanoscale,” <i>Nano
    Letters</i>, vol. 20, no. 4. American Chemical Society, pp. 2647–2653, 2020.
  ista: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. 2020. Wood
    deformation leads to rearrangement of molecules at the nanoscale. Nano Letters.
    20(4), 2647–2653.
  mla: Felhofer, Martin, et al. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>, vol. 20, no. 4, American Chemical Society,
    2020, pp. 2647–53, doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>.
  short: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, N. Gierlinger,
    Nano Letters 20 (2020) 2647–2653.
date_created: 2020-04-19T22:00:54Z
date_published: 2020-04-08T00:00:00Z
date_updated: 2026-04-02T14:26:44Z
day: '08'
ddc:
- '530'
department:
- _id: MaLo
doi: 10.1021/acs.nanolett.0c00205
external_id:
  isi:
  - '000526413400055'
  pmid:
  - '32196350'
file:
- access_level: open_access
  checksum: fe46146a9c4c620592a1932a8599069e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:43:36Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7667'
  file_name: 2020_NanoLetters_Felhofer.pdf
  file_size: 7108014
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2647-2653
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Wood deformation leads to rearrangement of molecules at the nanoscale
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 20
year: '2020'
...
---
_id: '7664'
abstract:
- lang: eng
  text: Metabotropic γ-aminobutyric acid (GABAB) receptors contribute to the control
    of network activity and information processing in hippocampal circuits by regulating
    neuronal excitability and synaptic transmission. The dysfunction in the dentate
    gyrus (DG) has been implicated in Alzheimer´s disease (AD). Given the involvement
    of GABAB receptors in AD, to determine their subcellular localisation and possible
    alteration in granule cells of the DG in a mouse model of AD at 12 months of age,
    we used high-resolution immunoelectron microscopic analysis. Immunohistochemistry
    at the light microscopic level showed that the regional and cellular expression
    pattern of GABAB1 was similar in an AD model mouse expressing mutated human amyloid
    precursor protein and presenilin1 (APP/PS1) and in age-matched wild type mice.
    High-resolution immunoelectron microscopy revealed a distance-dependent gradient
    of immunolabelling for GABAB receptors, increasing from proximal to distal dendrites
    in both wild type and APP/PS1 mice. However, the overall density of GABAB receptors
    at the neuronal surface of these postsynaptic compartments of granule cells was
    significantly reduced in APP/PS1 mice. Parallel to this reduction in surface receptors,
    we found a significant increase in GABAB1 at cytoplasmic sites. GABAB receptors
    were also detected at presynaptic sites in the molecular layer of the DG. We also
    found a decrease in plasma membrane GABAB receptors in axon terminals contacting
    dendritic spines of granule cells, which was more pronounced in the outer than
    in the inner molecular layer. Altogether, our data showing post- and presynaptic
    reduction in surface GABAB receptors in the DG suggest the alteration of the GABAB-mediated
    modulation of excitability and synaptic transmission in granule cells, which may
    contribute to the cognitive dysfunctions in the APP/PS1 model of AD
article_number: '2459'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International journal of molecular sciences</i>. 2020;21(7). doi:<a
    href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International Journal of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, Ryuichi
    Shigemoto, Yugo Fukazawa, and Rafael Luján. “Density of GABAB Receptors Is Reduced
    in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.”
    <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Density of GABAB receptors is reduced in
    granule cells of the hippocampus in a mouse model of Alzheimer’s disease,” <i>International
    journal of molecular sciences</i>, vol. 21, no. 7. MDPI, 2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Shigemoto R, Fukazawa Y, Luján R. 2020. Density
    of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model
    of Alzheimer’s disease. International journal of molecular sciences. 21(7), 2459.
  mla: Martín-Belmonte, Alejandro, et al. “Density of GABAB Receptors Is Reduced in
    Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>International
    Journal of Molecular Sciences</i>, vol. 21, no. 7, 2459, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, R. Shigemoto, Y. Fukazawa, R. Luján,
    International Journal of Molecular Sciences 21 (2020).
date_created: 2020-04-19T22:00:55Z
date_published: 2020-04-02T00:00:00Z
date_updated: 2026-04-02T14:27:06Z
day: '02'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3390/ijms21072459
external_id:
  isi:
  - '000535574200201'
  pmid:
  - '32252271'
file:
- access_level: open_access
  checksum: b9d2f1657d8c4a74b01a62b474d009b0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T11:43:18Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7669'
  file_name: 2020_JournMolecSciences_Martin_Belmonte.pdf
  file_size: 2941197
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '7'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: International journal of molecular sciences
publication_identifier:
  eissn:
  - 1422-0067
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density of GABAB receptors is reduced in granule cells of the hippocampus in
  a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 21
year: '2020'
...
---
_id: '7665'
abstract:
- lang: eng
  text: Acute brain slice preparation is a powerful experimental model for investigating
    the characteristics of synaptic function in the brain. Although brain tissue is
    usually cut at ice-cold temperature (CT) to facilitate slicing and avoid neuronal
    damage, exposure to CT causes molecular and architectural changes of synapses.
    To address these issues, we investigated ultrastructural and electrophysiological
    features of synapses in mouse acute cerebellar slices prepared at ice-cold and
    physiological temperature (PT). In the slices prepared at CT, we found significant
    spine loss and reconstruction, synaptic vesicle rearrangement and decrease in
    synaptic proteins, all of which were not detected in slices prepared at PT. Consistent
    with these structural findings, slices prepared at PT showed higher release probability.
    Furthermore, preparation at PT allows electrophysiological recording immediately
    after slicing resulting in higher detectability of long-term depression (LTD)
    after motor learning compared with that at CT. These results indicate substantial
    advantages of the slice preparation at PT for investigating synaptic functions
    in different physiological conditions.
article_number: '63'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
- first_name: Elena
  full_name: Hollergschwandtner, Elena
  id: 3C054040-F248-11E8-B48F-1D18A9856A87
  last_name: Hollergschwandtner
- first_name: Makoto
  full_name: Itakura, Makoto
  last_name: Itakura
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Eguchi K, Velicky P, Saeckl E, et al. Advantages of acute brain slices prepared
    at physiological temperature in the characterization of synaptic functions. <i>Frontiers
    in Cellular Neuroscience</i>. 2020;14. doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>
  apa: Eguchi, K., Velicky, P., Saeckl, E., Itakura, M., Fukazawa, Y., Danzl, J. G.,
    &#38; Shigemoto, R. (2020). Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions. <i>Frontiers in Cellular
    Neuroscience</i>. Frontiers Media. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>
  chicago: Eguchi, Kohgaku, Philipp Velicky, Elena Saeckl, Makoto Itakura, Yugo Fukazawa,
    Johann G Danzl, and Ryuichi Shigemoto. “Advantages of Acute Brain Slices Prepared
    at Physiological Temperature in the Characterization of Synaptic Functions.” <i>Frontiers
    in Cellular Neuroscience</i>. Frontiers Media, 2020. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>.
  ieee: K. Eguchi <i>et al.</i>, “Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions,” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14. Frontiers Media, 2020.
  ista: Eguchi K, Velicky P, Saeckl E, Itakura M, Fukazawa Y, Danzl JG, Shigemoto
    R. 2020. Advantages of acute brain slices prepared at physiological temperature
    in the characterization of synaptic functions. Frontiers in Cellular Neuroscience.
    14, 63.
  mla: Eguchi, Kohgaku, et al. “Advantages of Acute Brain Slices Prepared at Physiological
    Temperature in the Characterization of Synaptic Functions.” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14, 63, Frontiers Media, 2020, doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>.
  short: K. Eguchi, P. Velicky, E. Saeckl, M. Itakura, Y. Fukazawa, J.G. Danzl, R.
    Shigemoto, Frontiers in Cellular Neuroscience 14 (2020).
corr_author: '1'
date_created: 2020-04-19T22:00:55Z
date_published: 2020-03-19T00:00:00Z
date_updated: 2025-06-12T07:16:39Z
day: '19'
ddc:
- '570'
department:
- _id: JoDa
- _id: RySh
doi: 10.3389/fncel.2020.00063
ec_funded: 1
external_id:
  isi:
  - '000525582200001'
  pmid:
  - '32265664'
file:
- access_level: open_access
  checksum: 1c145123c6f8dc3e2e4bd5a66a1ad60e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:59:49Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7668'
  file_name: 2020_FrontiersCellularNeurosc_Eguchi.pdf
  file_size: 9227283
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2659CC84-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '793482'
  name: 'Ultrastructural analysis of phosphoinositides in nerve terminals: distribution,
    dynamics and physiological roles in synaptic transmission'
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Frontiers in Cellular Neuroscience
publication_identifier:
  issn:
  - 1662-5102
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Advantages of acute brain slices prepared at physiological temperature in the
  characterization of synaptic functions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2020'
...
---
_id: '7666'
abstract:
- lang: eng
  text: Generalizing the decomposition of a connected planar graph into a tree and
    a dual tree, we prove a combinatorial analog of the classic Helmholtz–Hodge decomposition
    of a smooth vector field. Specifically, we show that for every polyhedral complex,
    K, and every dimension, p, there is a partition of the set of p-cells into a maximal
    p-tree, a maximal p-cotree, and a collection of p-cells whose cardinality is the
    p-th reduced Betti number of K. Given an ordering of the p-cells, this tri-partition
    is unique, and it can be computed by a matrix reduction algorithm that also constructs
    canonical bases of cycle and boundary groups.
acknowledgement: This project has received funding from the European Research Council
  under the European Union’s Horizon 2020 research and innovation programme (Grant
  Agreement No. 78818 Alpha). It is also partially supported by the DFG Collaborative
  Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, through Grant
  No. I02979-N35 of the Austrian Science Fund (FWF).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Katharina
  full_name: Ölsböck, Katharina
  id: 4D4AA390-F248-11E8-B48F-1D18A9856A87
  last_name: Ölsböck
  orcid: 0000-0002-4672-8297
citation:
  ama: Edelsbrunner H, Ölsböck K. Tri-partitions and bases of an ordered complex.
    <i>Discrete and Computational Geometry</i>. 2020;64:759-775. doi:<a href="https://doi.org/10.1007/s00454-020-00188-x">10.1007/s00454-020-00188-x</a>
  apa: Edelsbrunner, H., &#38; Ölsböck, K. (2020). Tri-partitions and bases of an
    ordered complex. <i>Discrete and Computational Geometry</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s00454-020-00188-x">https://doi.org/10.1007/s00454-020-00188-x</a>
  chicago: Edelsbrunner, Herbert, and Katharina Ölsböck. “Tri-Partitions and Bases
    of an Ordered Complex.” <i>Discrete and Computational Geometry</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1007/s00454-020-00188-x">https://doi.org/10.1007/s00454-020-00188-x</a>.
  ieee: H. Edelsbrunner and K. Ölsböck, “Tri-partitions and bases of an ordered complex,”
    <i>Discrete and Computational Geometry</i>, vol. 64. Springer Nature, pp. 759–775,
    2020.
  ista: Edelsbrunner H, Ölsböck K. 2020. Tri-partitions and bases of an ordered complex.
    Discrete and Computational Geometry. 64, 759–775.
  mla: Edelsbrunner, Herbert, and Katharina Ölsböck. “Tri-Partitions and Bases of
    an Ordered Complex.” <i>Discrete and Computational Geometry</i>, vol. 64, Springer
    Nature, 2020, pp. 759–75, doi:<a href="https://doi.org/10.1007/s00454-020-00188-x">10.1007/s00454-020-00188-x</a>.
  short: H. Edelsbrunner, K. Ölsböck, Discrete and Computational Geometry 64 (2020)
    759–775.
corr_author: '1'
date_created: 2020-04-19T22:00:56Z
date_published: 2020-03-20T00:00:00Z
date_updated: 2025-04-14T07:48:36Z
day: '20'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-020-00188-x
ec_funded: 1
external_id:
  isi:
  - '000520918800001'
file:
- access_level: open_access
  checksum: f8cc96e497f00c38340b5dafe0cb91d7
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T13:22:21Z
  date_updated: 2020-11-20T13:22:21Z
  file_id: '8786'
  file_name: 2020_DiscreteCompGeo_Edelsbrunner.pdf
  file_size: 701673
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T13:22:21Z
has_accepted_license: '1'
intvolume: '        64'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 759-775
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - '14320444'
  issn:
  - '01795376'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tri-partitions and bases of an ordered complex
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 64
year: '2020'
...
---
_id: '7672'
abstract:
- lang: eng
  text: Large overpotentials upon discharge and charge of Li-O2 cells have motivated
    extensive research into heterogeneous solid electrocatalysts or non-carbon electrodes
    with the aim to improve rate capability, round-trip efficiency and cycle life.
    These features are equally governed by parasitic reactions, which are now recognized
    to be caused by the highly reactive singlet oxygen (1O2). However, the link between
    the presence of electrocatalysts and 1O2 formation in metal-O2 cells is unknown.
    Here, we show that, compared to pristine carbon black electrodes, a representative
    selection of electrocatalysts or non-carbon electrodes (noble metal, transition
    metal compounds) may both slightly reduce or severely increase the 1O2 formation.
    The individual reaction steps, where the surfaces impact the 1O2 yield are deciphered,
    showing that 1O2 yield from superoxide disproportionation as well as the decomposition
    of trace H2O2 are sensitive to catalysts. Transition metal compounds in general
    are prone to increase 1O2.
acknowledgement: S.A.F. thanks the International Society of Electrochemistry for awarding
  the Tajima Prize 2019 “in recognition of outstanding re- searches on Li-Air batteries
  by the use of a range of in-situ elec- trochemical methods to achieve comprehensive
  understanding of the reactions taking place at the oxygen electrode”. This article
  is dedicated to the special issue of Electrochmica Acta associated with the awarding
  conference. S.A.F. is indebted to and the Austrian Federal Ministry of Science,
  Research and Economy and the Austrian Research Promotion Agency (grant No. 845364
  ) and the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation programme (grant agreement No 636069). The authors thank
  J. Schlegl for manufacturing instrumentation, M. Winkler of Acib GmbH and G. Strohmeier
  for help with HPLC measurements, S. Eder for cyclic voltammetry measurements, and
  C. Slugovc for discussions and continuous support. We thank S. Borisov for access
  and advice with fluorescence measurements. We thank EL-Cell GmbH, Hamburg, Germany
  for providing the PAT-Cell-Press electrochemical cell.
article_number: '137175'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Aleksej
  full_name: Samojlov, Aleksej
  last_name: Samojlov
- first_name: David
  full_name: Schuster, David
  last_name: Schuster
- first_name: Jürgen
  full_name: Kahr, Jürgen
  last_name: Kahr
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Samojlov A, Schuster D, Kahr J, Freunberger SA. Surface and catalyst driven
    singlet oxygen formation in Li-O2 cells. <i>Electrochimica Acta</i>. 2020;362(12).
    doi:<a href="https://doi.org/10.1016/j.electacta.2020.137175">10.1016/j.electacta.2020.137175</a>
  apa: Samojlov, A., Schuster, D., Kahr, J., &#38; Freunberger, S. A. (2020). Surface
    and catalyst driven singlet oxygen formation in Li-O2 cells. <i>Electrochimica
    Acta</i>. Elsevier. <a href="https://doi.org/10.1016/j.electacta.2020.137175">https://doi.org/10.1016/j.electacta.2020.137175</a>
  chicago: Samojlov, Aleksej, David Schuster, Jürgen Kahr, and Stefan Alexander Freunberger.
    “Surface and Catalyst Driven Singlet Oxygen Formation in Li-O2 Cells.” <i>Electrochimica
    Acta</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.electacta.2020.137175">https://doi.org/10.1016/j.electacta.2020.137175</a>.
  ieee: A. Samojlov, D. Schuster, J. Kahr, and S. A. Freunberger, “Surface and catalyst
    driven singlet oxygen formation in Li-O2 cells,” <i>Electrochimica Acta</i>, vol.
    362, no. 12. Elsevier, 2020.
  ista: Samojlov A, Schuster D, Kahr J, Freunberger SA. 2020. Surface and catalyst
    driven singlet oxygen formation in Li-O2 cells. Electrochimica Acta. 362(12),
    137175.
  mla: Samojlov, Aleksej, et al. “Surface and Catalyst Driven Singlet Oxygen Formation
    in Li-O2 Cells.” <i>Electrochimica Acta</i>, vol. 362, no. 12, 137175, Elsevier,
    2020, doi:<a href="https://doi.org/10.1016/j.electacta.2020.137175">10.1016/j.electacta.2020.137175</a>.
  short: A. Samojlov, D. Schuster, J. Kahr, S.A. Freunberger, Electrochimica Acta
    362 (2020).
corr_author: '1'
date_created: 2020-04-20T19:29:31Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2024-10-09T20:59:27Z
day: '01'
ddc:
- '540'
department:
- _id: StFr
doi: 10.1016/j.electacta.2020.137175
external_id:
  isi:
  - '000582869700060'
file:
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oa: 1
oa_version: Published Version
publication: Electrochimica Acta
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Surface and catalyst driven singlet oxygen formation in Li-O2 cells
tmp:
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    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
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...
---
_id: '7683'
abstract:
- lang: eng
  text: For any free oriented Borel–Moore homology theory A, we construct an associative
    product on the A-theory of the stack of Higgs torsion sheaves over a projective
    curve C. We show that the resulting algebra AHa0C admits a natural shuffle presentation,
    and prove it is faithful when A is replaced with usual Borel–Moore homology groups.
    We also introduce moduli spaces of stable triples, heavily inspired by Nakajima
    quiver varieties, whose A-theory admits an AHa0C-action. These triples can be
    interpreted as certain sheaves on PC(ωC⊕OC). In particular, we obtain an action
    of AHa0C on the cohomology of Hilbert schemes of points on T∗C.
article_number: '30'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Sasha
  full_name: Minets, Sasha
  id: 3E7C5304-F248-11E8-B48F-1D18A9856A87
  last_name: Minets
  orcid: 0000-0003-3883-1806
citation:
  ama: Minets S. Cohomological Hall algebras for Higgs torsion sheaves, moduli of
    triples and sheaves on surfaces. <i>Selecta Mathematica, New Series</i>. 2020;26(2).
    doi:<a href="https://doi.org/10.1007/s00029-020-00553-x">10.1007/s00029-020-00553-x</a>
  apa: Minets, S. (2020). Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces. <i>Selecta Mathematica, New Series</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00029-020-00553-x">https://doi.org/10.1007/s00029-020-00553-x</a>
  chicago: Minets, Sasha. “Cohomological Hall Algebras for Higgs Torsion Sheaves,
    Moduli of Triples and Sheaves on Surfaces.” <i>Selecta Mathematica, New Series</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s00029-020-00553-x">https://doi.org/10.1007/s00029-020-00553-x</a>.
  ieee: S. Minets, “Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces,” <i>Selecta Mathematica, New Series</i>, vol.
    26, no. 2. Springer Nature, 2020.
  ista: Minets S. 2020. Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces. Selecta Mathematica, New Series. 26(2), 30.
  mla: Minets, Sasha. “Cohomological Hall Algebras for Higgs Torsion Sheaves, Moduli
    of Triples and Sheaves on Surfaces.” <i>Selecta Mathematica, New Series</i>, vol.
    26, no. 2, 30, Springer Nature, 2020, doi:<a href="https://doi.org/10.1007/s00029-020-00553-x">10.1007/s00029-020-00553-x</a>.
  short: S. Minets, Selecta Mathematica, New Series 26 (2020).
corr_author: '1'
date_created: 2020-04-26T22:00:44Z
date_published: 2020-04-15T00:00:00Z
date_updated: 2025-05-20T10:38:32Z
day: '15'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1007/s00029-020-00553-x
external_id:
  arxiv:
  - '1801.01429'
  isi:
  - '000526036400001'
file:
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  date_updated: 2020-07-14T12:48:02Z
  file_id: '7690'
  file_name: 2020_SelectaMathematica_Minets.pdf
  file_size: 792469
  relation: main_file
file_date_updated: 2020-07-14T12:48:02Z
has_accepted_license: '1'
intvolume: '        26'
isi: 1
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Selecta Mathematica, New Series
publication_identifier:
  eissn:
  - 1420-9020
  issn:
  - 1022-1824
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cohomological Hall algebras for Higgs torsion sheaves, moduli of triples and
  sheaves on surfaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 9947682f-b9fa-11ee-9c4a-b3ffaafe6614
volume: 26
year: '2020'
...
---
_id: '7684'
article_processing_charge: No
article_type: original
author:
- first_name: Igor
  full_name: Gridchyn, Igor
  id: 4B60654C-F248-11E8-B48F-1D18A9856A87
  last_name: Gridchyn
  orcid: 0000-0002-1807-1929
- first_name: Philipp
  full_name: Schönenberger, Philipp
  id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
  last_name: Schönenberger
- first_name: Joseph
  full_name: O'Neill, Joseph
  id: 426376DC-F248-11E8-B48F-1D18A9856A87
  last_name: O'Neill
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
citation:
  ama: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. Assembly-specific disruption
    of hippocampal replay leads to selective memory deficit. <i>Neuron</i>. 2020;106(2):291-300.e6.
    doi:<a href="https://doi.org/10.1016/j.neuron.2020.01.021">10.1016/j.neuron.2020.01.021</a>
  apa: Gridchyn, I., Schönenberger, P., O’Neill, J., &#38; Csicsvari, J. L. (2020).
    Assembly-specific disruption of hippocampal replay leads to selective memory deficit.
    <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2020.01.021">https://doi.org/10.1016/j.neuron.2020.01.021</a>
  chicago: Gridchyn, Igor, Philipp Schönenberger, Joseph O’Neill, and Jozsef L Csicsvari.
    “Assembly-Specific Disruption of Hippocampal Replay Leads to Selective Memory
    Deficit.” <i>Neuron</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.neuron.2020.01.021">https://doi.org/10.1016/j.neuron.2020.01.021</a>.
  ieee: I. Gridchyn, P. Schönenberger, J. O’Neill, and J. L. Csicsvari, “Assembly-specific
    disruption of hippocampal replay leads to selective memory deficit,” <i>Neuron</i>,
    vol. 106, no. 2. Elsevier, p. 291–300.e6, 2020.
  ista: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. 2020. Assembly-specific
    disruption of hippocampal replay leads to selective memory deficit. Neuron. 106(2),
    291–300.e6.
  mla: Gridchyn, Igor, et al. “Assembly-Specific Disruption of Hippocampal Replay
    Leads to Selective Memory Deficit.” <i>Neuron</i>, vol. 106, no. 2, Elsevier,
    2020, p. 291–300.e6, doi:<a href="https://doi.org/10.1016/j.neuron.2020.01.021">10.1016/j.neuron.2020.01.021</a>.
  short: I. Gridchyn, P. Schönenberger, J. O’Neill, J.L. Csicsvari, Neuron 106 (2020)
    291–300.e6.
date_created: 2020-04-26T22:00:45Z
date_published: 2020-04-22T00:00:00Z
date_updated: 2026-06-18T19:26:54Z
day: '22'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1016/j.neuron.2020.01.021
ec_funded: 1
external_id:
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  - '000528268200013'
  pmid:
  - '32070475'
intvolume: '       106'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
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  url: https://doi.org/10.1016/j.neuron.2020.01.021
month: '04'
oa: 1
oa_version: Published Version
page: 291-300.e6
pmid: 1
project:
- _id: 257A4776-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281511'
  name: Memory-related information processing in neuronal circuits of the hippocampus
    and entorhinal cortex
publication: Neuron
publication_identifier:
  eissn:
  - 1097-4199
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/librarian-of-memory/
scopus_import: '1'
status: public
title: Assembly-specific disruption of hippocampal replay leads to selective memory
  deficit
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 106
year: '2020'
...
