---
_id: '430'
abstract:
- lang: eng
  text: In this issue of GENETICS, a new method for detecting natural selection on
    polygenic traits is developed and applied to sev- eral human examples ( Racimo
    et al. 2018 ). By de fi nition, many loci contribute to variation in polygenic
    traits, and a challenge for evolutionary ge neticists has been that these traits
    can evolve by small, nearly undetectable shifts in allele frequencies across each
    of many, typically unknown, loci. Recently, a helpful remedy has arisen. Genome-wide
    associ- ation studies (GWAS) have been illuminating sets of loci that can be interrogated
    jointly for c hanges in allele frequencies. By aggregating small signal s of change
    across many such loci, directional natural selection is now in principle detect-
    able using genetic data, even for highly polygenic traits. This is an exciting
    arena of progress – with these methods, tests can be made for selection associated
    with traits, and we can now study selection in what may be its most prevalent
    mode. The continuing fast pace of GWAS publications suggest there will be many
    more polygenic tests of selection in the near future, as every new GWAS is an
    opportunity for an accom- panying test of polygenic selection. However, it is
    important to be aware of complications th at arise in interpretation, especially
    given that these studies may easily be misinter- preted both in and outside the
    evolutionary genetics commu- nity. Here, we provide context for understanding
    polygenic tests and urge caution regarding how these results are inter- preted
    and reported upon more broadly.
article_processing_charge: No
author:
- first_name: John
  full_name: Novembre, John
  last_name: Novembre
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Novembre J, Barton NH. Tread lightly interpreting polygenic tests of selection.
    <i>Genetics</i>. 2018;208(4):1351-1355. doi:<a href="https://doi.org/10.1534/genetics.118.300786">10.1534/genetics.118.300786</a>
  apa: Novembre, J., &#38; Barton, N. H. (2018). Tread lightly interpreting polygenic
    tests of selection. <i>Genetics</i>. Genetics Society of America. <a href="https://doi.org/10.1534/genetics.118.300786">https://doi.org/10.1534/genetics.118.300786</a>
  chicago: Novembre, John, and Nicholas H Barton. “Tread Lightly Interpreting Polygenic
    Tests of Selection.” <i>Genetics</i>. Genetics Society of America, 2018. <a href="https://doi.org/10.1534/genetics.118.300786">https://doi.org/10.1534/genetics.118.300786</a>.
  ieee: J. Novembre and N. H. Barton, “Tread lightly interpreting polygenic tests
    of selection,” <i>Genetics</i>, vol. 208, no. 4. Genetics Society of America,
    pp. 1351–1355, 2018.
  ista: Novembre J, Barton NH. 2018. Tread lightly interpreting polygenic tests of
    selection. Genetics. 208(4), 1351–1355.
  mla: Novembre, John, and Nicholas H. Barton. “Tread Lightly Interpreting Polygenic
    Tests of Selection.” <i>Genetics</i>, vol. 208, no. 4, Genetics Society of America,
    2018, pp. 1351–55, doi:<a href="https://doi.org/10.1534/genetics.118.300786">10.1534/genetics.118.300786</a>.
  short: J. Novembre, N.H. Barton, Genetics 208 (2018) 1351–1355.
date_created: 2018-12-11T11:46:26Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2023-09-19T10:17:30Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1534/genetics.118.300786
external_id:
  isi:
  - '000429094400005'
file:
- access_level: open_access
  checksum: 3d838dc285df394376555b794b6a5ad1
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:40Z
  date_updated: 2020-07-14T12:46:26Z
  file_id: '4958'
  file_name: IST-2018-1012-v1+1_2018_Barton_Tread.pdf
  file_size: 500129
  relation: main_file
file_date_updated: 2020-07-14T12:46:26Z
has_accepted_license: '1'
intvolume: '       208'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1351 - 1355
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '7393'
pubrep_id: '1012'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tread lightly interpreting polygenic tests of selection
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 208
year: '2018'
...
---
_id: '434'
abstract:
- lang: eng
  text: In this paper, we present a formal model-driven design approach to establish
    a safety-assured implementation of multifunction vehicle bus controller (MVBC),
    which controls the data transmission among the devices of the vehicle. First,
    the generic models and safety requirements described in International Electrotechnical
    Commission Standard 61375 are formalized as time automata and timed computation
    tree logic formulas, respectively. With model checking tool Uppaal, we verify
    whether or not the constructed timed automata satisfy the formulas and several
    logic inconsistencies in the original standard are detected and corrected. Then,
    we apply the code generation tool Times to generate C code from the verified model,
    which is later synthesized into a real MVBC chip, with some handwriting glue code.
    Furthermore, the runtime verification tool RMOR is applied on the integrated code,
    to verify some safety requirements that cannot be formalized on the timed automata.
    For evaluation, we compare the proposed approach with existing MVBC design methods,
    such as BeagleBone, Galsblock, and Simulink. Experiments show that more ambiguousness
    or bugs in the standard are detected during Uppaal verification, and the generated
    code of Times outperforms the C code generated by others in terms of the synthesized
    binary code size. The errors in the standard have been confirmed and the resulting
    MVBC has been deployed in the real train communication network.
article_processing_charge: No
author:
- first_name: Yu
  full_name: Jiang, Yu
  last_name: Jiang
- first_name: Han
  full_name: Liu, Han
  last_name: Liu
- first_name: Huobing
  full_name: Song, Huobing
  last_name: Song
- first_name: Hui
  full_name: Kong, Hui
  id: 3BDE25AA-F248-11E8-B48F-1D18A9856A87
  last_name: Kong
  orcid: 0000-0002-3066-6941
- first_name: Rui
  full_name: Wang, Rui
  last_name: Wang
- first_name: Yong
  full_name: Guan, Yong
  last_name: Guan
- first_name: Lui
  full_name: Sha, Lui
  last_name: Sha
citation:
  ama: Jiang Y, Liu H, Song H, et al. Safety-assured model-driven design of the multifunction
    vehicle bus controller. <i>IEEE Transactions on Intelligent Transportation Systems</i>.
    2018;19(10):3320-3333. doi:<a href="https://doi.org/10.1109/TITS.2017.2778077">10.1109/TITS.2017.2778077</a>
  apa: Jiang, Y., Liu, H., Song, H., Kong, H., Wang, R., Guan, Y., &#38; Sha, L. (2018).
    Safety-assured model-driven design of the multifunction vehicle bus controller.
    <i>IEEE Transactions on Intelligent Transportation Systems</i>. IEEE. <a href="https://doi.org/10.1109/TITS.2017.2778077">https://doi.org/10.1109/TITS.2017.2778077</a>
  chicago: Jiang, Yu, Han Liu, Huobing Song, Hui Kong, Rui Wang, Yong Guan, and Lui
    Sha. “Safety-Assured Model-Driven Design of the Multifunction Vehicle Bus Controller.”
    <i>IEEE Transactions on Intelligent Transportation Systems</i>. IEEE, 2018. <a
    href="https://doi.org/10.1109/TITS.2017.2778077">https://doi.org/10.1109/TITS.2017.2778077</a>.
  ieee: Y. Jiang <i>et al.</i>, “Safety-assured model-driven design of the multifunction
    vehicle bus controller,” <i>IEEE Transactions on Intelligent Transportation Systems</i>,
    vol. 19, no. 10. IEEE, pp. 3320–3333, 2018.
  ista: Jiang Y, Liu H, Song H, Kong H, Wang R, Guan Y, Sha L. 2018. Safety-assured
    model-driven design of the multifunction vehicle bus controller. IEEE Transactions
    on Intelligent Transportation Systems. 19(10), 3320–3333.
  mla: Jiang, Yu, et al. “Safety-Assured Model-Driven Design of the Multifunction
    Vehicle Bus Controller.” <i>IEEE Transactions on Intelligent Transportation Systems</i>,
    vol. 19, no. 10, IEEE, 2018, pp. 3320–33, doi:<a href="https://doi.org/10.1109/TITS.2017.2778077">10.1109/TITS.2017.2778077</a>.
  short: Y. Jiang, H. Liu, H. Song, H. Kong, R. Wang, Y. Guan, L. Sha, IEEE Transactions
    on Intelligent Transportation Systems 19 (2018) 3320–3333.
date_created: 2018-12-11T11:46:27Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2025-09-22T09:39:54Z
day: '01'
department:
- _id: ToHe
doi: 10.1109/TITS.2017.2778077
external_id:
  isi:
  - '000446651100020'
intvolume: '        19'
isi: 1
issue: '10'
language:
- iso: eng
month: '01'
oa_version: None
page: 3320 - 3333
publication: IEEE Transactions on Intelligent Transportation Systems
publication_status: published
publisher: IEEE
publist_id: '7389'
quality_controlled: '1'
related_material:
  record:
  - id: '1205'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Safety-assured model-driven design of the multifunction vehicle bus controller
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 19
year: '2018'
...
---
_id: '435'
abstract:
- lang: eng
  text: It is shown that two fundamentally different phenomena, the bound states in
    continuum and the spectral singularity (or time-reversed spectral singularity),
    can occur simultaneously. This can be achieved in a rectangular core dielectric
    waveguide with an embedded active (or absorbing) layer. In such a system a two-dimensional
    bound state in a continuum is created in the plane of a waveguide cross section,
    and it is emitted or absorbed along the waveguide core. The idea can be used for
    experimental implementation of a laser or a coherent-perfect-absorber for a photonic
    bound state that resides in a continuous spectrum.
acknowledgement: 'Seventh Framework Programme (FP7) People: Marie-Curie Actions (PEOPLE)
  (291734). B. M. acknowledges the financial support by the People Programme (Marie
  Curie Actions) of the European Union’s Seventh Framework Programme (FP7/ 2007-2013)
  under REA.'
article_processing_charge: No
arxiv: 1
author:
- first_name: Bikashkali
  full_name: Midya, Bikashkali
  id: 456187FC-F248-11E8-B48F-1D18A9856A87
  last_name: Midya
- first_name: Vladimir
  full_name: Konotop, Vladimir
  last_name: Konotop
citation:
  ama: Midya B, Konotop V. Coherent-perfect-absorber and laser for bound states in
    a continuum. <i>Optics Letters</i>. 2018;43(3):607-610. doi:<a href="https://doi.org/10.1364/OL.43.000607">10.1364/OL.43.000607</a>
  apa: Midya, B., &#38; Konotop, V. (2018). Coherent-perfect-absorber and laser for
    bound states in a continuum. <i>Optics Letters</i>. Optica Publishing Group. <a
    href="https://doi.org/10.1364/OL.43.000607">https://doi.org/10.1364/OL.43.000607</a>
  chicago: Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and
    Laser for Bound States in a Continuum.” <i>Optics Letters</i>. Optica Publishing
    Group, 2018. <a href="https://doi.org/10.1364/OL.43.000607">https://doi.org/10.1364/OL.43.000607</a>.
  ieee: B. Midya and V. Konotop, “Coherent-perfect-absorber and laser for bound states
    in a continuum,” <i>Optics Letters</i>, vol. 43, no. 3. Optica Publishing Group,
    pp. 607–610, 2018.
  ista: Midya B, Konotop V. 2018. Coherent-perfect-absorber and laser for bound states
    in a continuum. Optics Letters. 43(3), 607–610.
  mla: Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and Laser
    for Bound States in a Continuum.” <i>Optics Letters</i>, vol. 43, no. 3, Optica
    Publishing Group, 2018, pp. 607–10, doi:<a href="https://doi.org/10.1364/OL.43.000607">10.1364/OL.43.000607</a>.
  short: B. Midya, V. Konotop, Optics Letters 43 (2018) 607–610.
corr_author: '1'
date_created: 2018-12-11T11:46:27Z
date_published: 2018-02-01T00:00:00Z
date_updated: 2025-06-03T11:21:56Z
day: '01'
department:
- _id: MiLe
doi: 10.1364/OL.43.000607
ec_funded: 1
external_id:
  arxiv:
  - '1711.01986'
  isi:
  - '000423776600066'
intvolume: '        43'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1711.01986
month: '02'
oa: 1
oa_version: Preprint
page: 607 - 610
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Optics Letters
publication_status: published
publisher: Optica Publishing Group
publist_id: '7388'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coherent-perfect-absorber and laser for bound states in a continuum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2018'
...
---
_id: '436'
abstract:
- lang: eng
  text: There has been significant interest recently in using complex quantum systems
    to create effective nonreciprocal dynamics. Proposals have been put forward for
    the realization of artificial magnetic fields for photons and phonons; experimental
    progress is fast making these proposals a reality. Much work has concentrated
    on the use of such systems for controlling the flow of signals, e.g., to create
    isolators or directional amplifiers for optical signals. In this Letter, we build
    on this work but move in a different direction. We develop the theory of and discuss
    a potential realization for the controllable flow of thermal noise in quantum
    systems. We demonstrate theoretically that the unidirectional flow of thermal
    noise is possible within quantum cascaded systems. Viewing an optomechanical platform
    as a cascaded system we show here that one can ultimately control the direction
    of the flow of thermal noise. By appropriately engineering the mechanical resonator,
    which acts as an artificial reservoir, the flow of thermal noise can be constrained
    to a desired direction, yielding a thermal rectifier. The proposed quantum thermal
    noise rectifier could potentially be used to develop devices such as a thermal
    modulator, a thermal router, and a thermal amplifier for nanoelectronic devices
    and superconducting circuits.
article_number: '060601 '
article_processing_charge: No
arxiv: 1
author:
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Matteo
  full_name: Aquilina, Matteo
  last_name: Aquilina
- first_name: André
  full_name: Xuereb, André
  last_name: Xuereb
citation:
  ama: Barzanjeh S, Aquilina M, Xuereb A. Manipulating the flow of thermal noise in
    quantum devices. <i>Physical Review Letters</i>. 2018;120(6). doi:<a href="https://doi.org/10.1103/PhysRevLett.120.060601">10.1103/PhysRevLett.120.060601</a>
  apa: Barzanjeh, S., Aquilina, M., &#38; Xuereb, A. (2018). Manipulating the flow
    of thermal noise in quantum devices. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.120.060601">https://doi.org/10.1103/PhysRevLett.120.060601</a>
  chicago: Barzanjeh, Shabir, Matteo Aquilina, and André Xuereb. “Manipulating the
    Flow of Thermal Noise in Quantum Devices.” <i>Physical Review Letters</i>. American
    Physical Society, 2018. <a href="https://doi.org/10.1103/PhysRevLett.120.060601">https://doi.org/10.1103/PhysRevLett.120.060601</a>.
  ieee: S. Barzanjeh, M. Aquilina, and A. Xuereb, “Manipulating the flow of thermal
    noise in quantum devices,” <i>Physical Review Letters</i>, vol. 120, no. 6. American
    Physical Society, 2018.
  ista: Barzanjeh S, Aquilina M, Xuereb A. 2018. Manipulating the flow of thermal
    noise in quantum devices. Physical Review Letters. 120(6), 060601.
  mla: Barzanjeh, Shabir, et al. “Manipulating the Flow of Thermal Noise in Quantum
    Devices.” <i>Physical Review Letters</i>, vol. 120, no. 6, 060601, American Physical
    Society, 2018, doi:<a href="https://doi.org/10.1103/PhysRevLett.120.060601">10.1103/PhysRevLett.120.060601</a>.
  short: S. Barzanjeh, M. Aquilina, A. Xuereb, Physical Review Letters 120 (2018).
corr_author: '1'
date_created: 2018-12-11T11:46:28Z
date_published: 2018-02-07T00:00:00Z
date_updated: 2024-10-22T09:36:24Z
day: '07'
department:
- _id: JoFi
doi: 10.1103/PhysRevLett.120.060601
ec_funded: 1
external_id:
  arxiv:
  - '1706.09051'
  isi:
  - '000424382100004'
intvolume: '       120'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1706.09051
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 257EB838-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '732894'
  name: Hybrid Optomechanical Technologies
- _id: 258047B6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '707438'
  name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
    with cavity Optomechanics'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '7387'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/interference-as-a-new-method-for-cooling-quantum-devices/
scopus_import: '1'
status: public
title: Manipulating the flow of thermal noise in quantum devices
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 120
year: '2018'
...
---
_id: '437'
abstract:
- lang: eng
  text: Dendritic cells (DCs) are sentinels of the adaptive immune system that reside
    in peripheral organs of mammals. Upon pathogen encounter, they undergo maturation
    and up-regulate the chemokine receptor CCR7 that guides them along gradients of
    its chemokine ligands CCL19 and 21 to the next draining lymph node. There, DCs
    present peripherally acquired antigen to naïve T cells, thereby triggering adaptive
    immunity.
acknowledged_ssus:
- _id: SSU
acknowledgement: "This work was supported by grants of the European Research Council
  (ERC CoG 724373) and the Austrian Science Fund (FWF) to M.S. We thank the scientific
  support units at IST Austria for excellent technical support.\r\nWe thank the  scientific
  \ support units at IST Austria for excellent technical support.   "
article_processing_charge: Yes (via OA deal)
author:
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Ingrid
  full_name: De Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: De Vries
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Hans
  full_name: Haecker, Hans
  last_name: Haecker
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. Fast
    and efficient genetic engineering of hematopoietic precursor cells for the study
    of dendritic cell migration. <i>European Journal of Immunology</i>. 2018;48(6):1074-1077.
    doi:<a href="https://doi.org/10.1002/eji.201747358">10.1002/eji.201747358</a>
  apa: Leithner, A. F., Renkawitz, J., de Vries, I., Hauschild, R., Haecker, H., &#38;
    Sixt, M. K. (2018). Fast and efficient genetic engineering of hematopoietic precursor
    cells for the study of dendritic cell migration. <i>European Journal of Immunology</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1002/eji.201747358">https://doi.org/10.1002/eji.201747358</a>
  chicago: Leithner, Alexander F, Jörg Renkawitz, Ingrid de Vries, Robert Hauschild,
    Hans Haecker, and Michael K Sixt. “Fast and Efficient Genetic Engineering of Hematopoietic
    Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal
    of Immunology</i>. Wiley-Blackwell, 2018. <a href="https://doi.org/10.1002/eji.201747358">https://doi.org/10.1002/eji.201747358</a>.
  ieee: A. F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, and M.
    K. Sixt, “Fast and efficient genetic engineering of hematopoietic precursor cells
    for the study of dendritic cell migration,” <i>European Journal of Immunology</i>,
    vol. 48, no. 6. Wiley-Blackwell, pp. 1074–1077, 2018.
  ista: Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. 2018.
    Fast and efficient genetic engineering of hematopoietic precursor cells for the
    study of dendritic cell migration. European Journal of Immunology. 48(6), 1074–1077.
  mla: Leithner, Alexander F., et al. “Fast and Efficient Genetic Engineering of Hematopoietic
    Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal
    of Immunology</i>, vol. 48, no. 6, Wiley-Blackwell, 2018, pp. 1074–77, doi:<a
    href="https://doi.org/10.1002/eji.201747358">10.1002/eji.201747358</a>.
  short: A.F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, M.K.
    Sixt, European Journal of Immunology 48 (2018) 1074–1077.
corr_author: '1'
date_created: 2018-12-11T11:46:28Z
date_published: 2018-02-13T00:00:00Z
date_updated: 2025-04-14T07:42:07Z
day: '13'
ddc:
- '570'
department:
- _id: MiSi
- _id: Bio
doi: 10.1002/eji.201747358
ec_funded: 1
external_id:
  isi:
  - '000434963700016'
file:
- access_level: open_access
  checksum: 9d5b74cd016505aeb9a4c2d33bbedaeb
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:56Z
  date_updated: 2020-07-14T12:46:27Z
  file_id: '5044'
  file_name: IST-2018-1067-v1+2_Leithner_et_al-2018-European_Journal_of_Immunology.pdf
  file_size: 590106
  relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: '        48'
isi: 1
issue: '6'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1074 - 1077
project:
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular Navigation Along Spatial Gradients
publication: European Journal of Immunology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7386'
pubrep_id: '1067'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fast and efficient genetic engineering of hematopoietic precursor cells for
  the study of dendritic cell migration
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 48
year: '2018'
...
---
_id: '44'
abstract:
- lang: eng
  text: 'Recent realization of a kinetically constrained chain of Rydberg atoms by
    Bernien et al., [Nature (London) 551, 579 (2017)] resulted in the observation
    of unusual revivals in the many-body quantum dynamics. In our previous work [C.
    J. Turner et al., Nat. Phys. 14, 745 (2018)], such dynamics was attributed to
    the existence of “quantum scarred” eigenstates in the many-body spectrum of the
    experimentally realized model. Here, we present a detailed study of the eigenstate
    properties of the same model. We find that the majority of the eigenstates exhibit
    anomalous thermalization: the observable expectation values converge to their
    Gibbs ensemble values, but parametrically slower compared to the predictions of
    the eigenstate thermalization hypothesis (ETH). Amidst the thermalizing spectrum,
    we identify nonergodic eigenstates that strongly violate the ETH, whose number
    grows polynomially with system size. Previously, the same eigenstates were identified
    via large overlaps with certain product states, and were used to explain the revivals
    observed in experiment. Here, we find that these eigenstates, in addition to highly
    atypical expectation values of local observables, also exhibit subthermal entanglement
    entropy that scales logarithmically with the system size. Moreover, we identify
    an additional class of quantum scarred eigenstates, and discuss their manifestations
    in the dynamics starting from initial product states. We use forward scattering
    approximation to describe the structure and physical properties of quantum scarred
    eigenstates. Finally, we discuss the stability of quantum scars to various perturbations.
    We observe that quantum scars remain robust when the introduced perturbation is
    compatible with the forward scattering approximation. In contrast, the perturbations
    which most efficiently destroy quantum scars also lead to the restoration of “canonical”
    thermalization.'
acknowledged_ssus:
- _id: ScienComp
article_number: '155134'
article_processing_charge: No
arxiv: 1
author:
- first_name: C J
  full_name: Turner, C J
  last_name: Turner
- first_name: Alexios
  full_name: Michailidis, Alexios
  id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
  last_name: Michailidis
  orcid: 0000-0002-8443-1064
- first_name: D A
  full_name: Abanin, D A
  last_name: Abanin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Z
  full_name: Papić, Z
  last_name: Papić
citation:
  ama: 'Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. Quantum scarred eigenstates
    in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability
    to perturbations. <i>Physical Review B</i>. 2018;98(15). doi:<a href="https://doi.org/10.1103/PhysRevB.98.155134">10.1103/PhysRevB.98.155134</a>'
  apa: 'Turner, C. J., Michailidis, A., Abanin, D. A., Serbyn, M., &#38; Papić, Z.
    (2018). Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown
    of thermalization, and stability to perturbations. <i>Physical Review B</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevB.98.155134">https://doi.org/10.1103/PhysRevB.98.155134</a>'
  chicago: 'Turner, C J, Alexios Michailidis, D A Abanin, Maksym Serbyn, and Z Papić.
    “Quantum Scarred Eigenstates in a Rydberg Atom Chain: Entanglement, Breakdown
    of Thermalization, and Stability to Perturbations.” <i>Physical Review B</i>.
    American Physical Society, 2018. <a href="https://doi.org/10.1103/PhysRevB.98.155134">https://doi.org/10.1103/PhysRevB.98.155134</a>.'
  ieee: 'C. J. Turner, A. Michailidis, D. A. Abanin, M. Serbyn, and Z. Papić, “Quantum
    scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization,
    and stability to perturbations,” <i>Physical Review B</i>, vol. 98, no. 15. American
    Physical Society, 2018.'
  ista: 'Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. 2018. Quantum scarred
    eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization,
    and stability to perturbations. Physical Review B. 98(15), 155134.'
  mla: 'Turner, C. J., et al. “Quantum Scarred Eigenstates in a Rydberg Atom Chain:
    Entanglement, Breakdown of Thermalization, and Stability to Perturbations.” <i>Physical
    Review B</i>, vol. 98, no. 15, 155134, American Physical Society, 2018, doi:<a
    href="https://doi.org/10.1103/PhysRevB.98.155134">10.1103/PhysRevB.98.155134</a>.'
  short: C.J. Turner, A. Michailidis, D.A. Abanin, M. Serbyn, Z. Papić, Physical Review
    B 98 (2018).
date_created: 2018-12-11T11:44:19Z
date_published: 2018-10-22T00:00:00Z
date_updated: 2023-10-10T13:28:49Z
day: '22'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.98.155134
external_id:
  arxiv:
  - '1806.10933'
  isi:
  - '000447919100001'
intvolume: '        98'
isi: 1
issue: '15'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1806.10933
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '8010'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown
  of thermalization, and stability to perturbations'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 98
year: '2018'
...
---
_id: '446'
abstract:
- lang: eng
  text: We prove that in Thomas–Fermi–Dirac–von Weizsäcker theory, a nucleus of charge
    Z &gt; 0 can bind at most Z + C electrons, where C is a universal constant. This
    result is obtained through a comparison with Thomas-Fermi theory which, as a by-product,
    gives bounds on the screened nuclear potential and the radius of the minimizer.
    A key ingredient of the proof is a novel technique to control the particles in
    the exterior region, which also applies to the liquid drop model with a nuclear
    background potential.
acknowledgement: "We thank the referee for helpful suggestions that improved the presentation
  of the paper. We also acknowledge partial support by National Science Foundation
  Grant DMS-1363432 (R.L.F.), Austrian Science Fund (FWF) Project Nr. P 27533-N27
  (P.T.N.), CONICYT (Chile) through CONICYT–PCHA/ Doctorado Nacional/2014, and Iniciativa
  Científica Milenio (Chile) through Millenium Nucleus RC–120002 “Física Matemática”
  (H.V.D.B.).\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rupert
  full_name: Frank, Rupert
  last_name: Frank
- first_name: Nam
  full_name: Phan Thanh, Nam
  id: 404092F4-F248-11E8-B48F-1D18A9856A87
  last_name: Phan Thanh
- first_name: Hanne
  full_name: Van Den Bosch, Hanne
  last_name: Van Den Bosch
citation:
  ama: Frank R, Nam P, Van Den Bosch H. The ionization conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker theory. <i>Communications on Pure and Applied Mathematics</i>. 2018;71(3):577-614.
    doi:<a href="https://doi.org/10.1002/cpa.21717">10.1002/cpa.21717</a>
  apa: Frank, R., Nam, P., &#38; Van Den Bosch, H. (2018). The ionization conjecture
    in Thomas–Fermi–Dirac–von Weizsäcker theory. <i>Communications on Pure and Applied
    Mathematics</i>. Wiley-Blackwell. <a href="https://doi.org/10.1002/cpa.21717">https://doi.org/10.1002/cpa.21717</a>
  chicago: Frank, Rupert, Phan Nam, and Hanne Van Den Bosch. “The Ionization Conjecture
    in Thomas–Fermi–Dirac–von Weizsäcker Theory.” <i>Communications on Pure and Applied
    Mathematics</i>. Wiley-Blackwell, 2018. <a href="https://doi.org/10.1002/cpa.21717">https://doi.org/10.1002/cpa.21717</a>.
  ieee: R. Frank, P. Nam, and H. Van Den Bosch, “The ionization conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker theory,” <i>Communications on Pure and Applied Mathematics</i>, vol.
    71, no. 3. Wiley-Blackwell, pp. 577–614, 2018.
  ista: Frank R, Nam P, Van Den Bosch H. 2018. The ionization conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker theory. Communications on Pure and Applied Mathematics. 71(3), 577–614.
  mla: Frank, Rupert, et al. “The Ionization Conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker Theory.” <i>Communications on Pure and Applied Mathematics</i>, vol.
    71, no. 3, Wiley-Blackwell, 2018, pp. 577–614, doi:<a href="https://doi.org/10.1002/cpa.21717">10.1002/cpa.21717</a>.
  short: R. Frank, P. Nam, H. Van Den Bosch, Communications on Pure and Applied Mathematics
    71 (2018) 577–614.
date_created: 2018-12-11T11:46:31Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-09-19T10:09:40Z
day: '01'
department:
- _id: RoSe
doi: 10.1002/cpa.21717
external_id:
  arxiv:
  - '1606.07355'
  isi:
  - '000422675800004'
intvolume: '        71'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1606.07355
month: '03'
oa: 1
oa_version: Preprint
page: 577 - 614
publication: Communications on Pure and Applied Mathematics
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7377'
quality_controlled: '1'
status: public
title: The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 71
year: '2018'
...
---
_id: '448'
abstract:
- lang: eng
  text: Around 150 million years ago, eusocial termites evolved from within the cockroaches,
    50 million years before eusocial Hymenoptera, such as bees and ants, appeared.
    Here, we report the 2-Gb genome of the German cockroach, Blattella germanica,
    and the 1.3-Gb genome of the drywood termite Cryptotermes secundus. We show evolutionary
    signatures of termite eusociality by comparing the genomes and transcriptomes
    of three termites and the cockroach against the background of 16 other eusocial
    and non-eusocial insects. Dramatic adaptive changes in genes underlying the production
    and perception of pheromones confirm the importance of chemical communication
    in the termites. These are accompanied by major changes in gene regulation and
    the molecular evolution of caste determination. Many of these results parallel
    molecular mechanisms of eusocial evolution in Hymenoptera. However, the specific
    solutions are remarkably different, thus revealing a striking case of convergence
    in one of the major evolutionary transitions in biological complexity.
acknowledgement: We thank O. Niehuis for allowing use of the unpublished E. danica
  genome, J. Gadau and C. Smith for comments and advice on the manuscript, and J.
  Schmitz for assistance with analyses and proofreading the manuscript. J.K. thanks
  Charles Darwin University (Australia), especially S. Garnett and the Horticulture
  and Aquaculture team, for providing logistic support to collect C. secundus. The
  Parks and Wildlife Commission, Northern Territory, the Department of the Environment,
  Water, Heritage and the Arts gave permission to collect (Permit number 36401) and
  export (Permit WT2010-6997) the termites. USDA is an equal opportunity provider
  and employer. M.C.H. and E.J. are supported by DFG grant BO2544/11-1 to E.B.-B.
  J.K. is supported by University of Osnabrück and DFG grant KO1895/16-1. X.B. and
  M.-D.P. are supported by Spanish Ministerio de Economía y Competitividad (CGL2012-36251
  and CGL2015-64727-P to X.B., and CGL2016-76011-R to M.-D.P.), including FEDER funds,
  and by Catalan Government (2014 SGR 619). C.S. is supported by grants from the US
  Department of Housing and Urban Development (NCHHU-0017-13), the National Science
  Foundation (IOS-1557864), the Alfred P. Sloan Foundation (2013-5-35 MBE), the National
  Institute of Environmental Health Sciences (P30ES025128) to the Center for Human
  Health and the Environment, and the Blanton J. Whitmire Endowment. M.P. is supported
  by a Villum Kann Rasmussen Young Investigator Fellowship (VKR10101).
article_processing_charge: No
author:
- first_name: Mark
  full_name: Harrison, Mark
  last_name: Harrison
- first_name: Evelien
  full_name: Jongepier, Evelien
  last_name: Jongepier
- first_name: Hugh
  full_name: Robertson, Hugh
  last_name: Robertson
- first_name: Nicolas
  full_name: Arning, Nicolas
  last_name: Arning
- first_name: Tristan
  full_name: Bitard Feildel, Tristan
  last_name: Bitard Feildel
- first_name: Hsu
  full_name: Chao, Hsu
  last_name: Chao
- first_name: Christopher
  full_name: Childers, Christopher
  last_name: Childers
- first_name: Huyen
  full_name: Dinh, Huyen
  last_name: Dinh
- first_name: Harshavardhan
  full_name: Doddapaneni, Harshavardhan
  last_name: Doddapaneni
- first_name: Shannon
  full_name: Dugan, Shannon
  last_name: Dugan
- first_name: Johannes
  full_name: Gowin, Johannes
  last_name: Gowin
- first_name: Carolin
  full_name: Greiner, Carolin
  last_name: Greiner
- first_name: Yi
  full_name: Han, Yi
  last_name: Han
- first_name: Haofu
  full_name: Hu, Haofu
  last_name: Hu
- first_name: Daniel
  full_name: Hughes, Daniel
  last_name: Hughes
- first_name: Ann K
  full_name: Huylmans, Ann K
  id: 4C0A3874-F248-11E8-B48F-1D18A9856A87
  last_name: Huylmans
  orcid: 0000-0001-8871-4961
- first_name: Karsten
  full_name: Kemena, Karsten
  last_name: Kemena
- first_name: Lukas
  full_name: Kremer, Lukas
  last_name: Kremer
- first_name: Sandra
  full_name: Lee, Sandra
  last_name: Lee
- first_name: Alberto
  full_name: López Ezquerra, Alberto
  last_name: López Ezquerra
- first_name: Ludovic
  full_name: Mallet, Ludovic
  last_name: Mallet
- first_name: Jose
  full_name: Monroy Kuhn, Jose
  last_name: Monroy Kuhn
- first_name: Annabell
  full_name: Moser, Annabell
  last_name: Moser
- first_name: Shwetha
  full_name: Murali, Shwetha
  last_name: Murali
- first_name: Donna
  full_name: Muzny, Donna
  last_name: Muzny
- first_name: Saria
  full_name: Otani, Saria
  last_name: Otani
- first_name: Maria
  full_name: Piulachs, Maria
  last_name: Piulachs
- first_name: Monica
  full_name: Poelchau, Monica
  last_name: Poelchau
- first_name: Jiaxin
  full_name: Qu, Jiaxin
  last_name: Qu
- first_name: Florentine
  full_name: Schaub, Florentine
  last_name: Schaub
- first_name: Ayako
  full_name: Wada Katsumata, Ayako
  last_name: Wada Katsumata
- first_name: Kim
  full_name: Worley, Kim
  last_name: Worley
- first_name: Qiaolin
  full_name: Xie, Qiaolin
  last_name: Xie
- first_name: Guillem
  full_name: Ylla, Guillem
  last_name: Ylla
- first_name: Michael
  full_name: Poulsen, Michael
  last_name: Poulsen
- first_name: Richard
  full_name: Gibbs, Richard
  last_name: Gibbs
- first_name: Coby
  full_name: Schal, Coby
  last_name: Schal
- first_name: Stephen
  full_name: Richards, Stephen
  last_name: Richards
- first_name: Xavier
  full_name: Belles, Xavier
  last_name: Belles
- first_name: Judith
  full_name: Korb, Judith
  last_name: Korb
- first_name: Erich
  full_name: Bornberg Bauer, Erich
  last_name: Bornberg Bauer
citation:
  ama: Harrison M, Jongepier E, Robertson H, et al. Hemimetabolous genomes reveal
    molecular basis of termite eusociality. <i>Nature Ecology and Evolution</i>. 2018;2(3):557-566.
    doi:<a href="https://doi.org/10.1038/s41559-017-0459-1">10.1038/s41559-017-0459-1</a>
  apa: Harrison, M., Jongepier, E., Robertson, H., Arning, N., Bitard Feildel, T.,
    Chao, H., … Bornberg Bauer, E. (2018). Hemimetabolous genomes reveal molecular
    basis of termite eusociality. <i>Nature Ecology and Evolution</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41559-017-0459-1">https://doi.org/10.1038/s41559-017-0459-1</a>
  chicago: Harrison, Mark, Evelien Jongepier, Hugh Robertson, Nicolas Arning, Tristan
    Bitard Feildel, Hsu Chao, Christopher Childers, et al. “Hemimetabolous Genomes
    Reveal Molecular Basis of Termite Eusociality.” <i>Nature Ecology and Evolution</i>.
    Springer Nature, 2018. <a href="https://doi.org/10.1038/s41559-017-0459-1">https://doi.org/10.1038/s41559-017-0459-1</a>.
  ieee: M. Harrison <i>et al.</i>, “Hemimetabolous genomes reveal molecular basis
    of termite eusociality,” <i>Nature Ecology and Evolution</i>, vol. 2, no. 3. Springer
    Nature, pp. 557–566, 2018.
  ista: Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H,
    Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes
    D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy
    Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub
    F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards
    S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular
    basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
  mla: Harrison, Mark, et al. “Hemimetabolous Genomes Reveal Molecular Basis of Termite
    Eusociality.” <i>Nature Ecology and Evolution</i>, vol. 2, no. 3, Springer Nature,
    2018, pp. 557–66, doi:<a href="https://doi.org/10.1038/s41559-017-0459-1">10.1038/s41559-017-0459-1</a>.
  short: M. Harrison, E. Jongepier, H. Robertson, N. Arning, T. Bitard Feildel, H.
    Chao, C. Childers, H. Dinh, H. Doddapaneni, S. Dugan, J. Gowin, C. Greiner, Y.
    Han, H. Hu, D. Hughes, A.K. Huylmans, K. Kemena, L. Kremer, S. Lee, A. López Ezquerra,
    L. Mallet, J. Monroy Kuhn, A. Moser, S. Murali, D. Muzny, S. Otani, M. Piulachs,
    M. Poelchau, J. Qu, F. Schaub, A. Wada Katsumata, K. Worley, Q. Xie, G. Ylla,
    M. Poulsen, R. Gibbs, C. Schal, S. Richards, X. Belles, J. Korb, E. Bornberg Bauer,
    Nature Ecology and Evolution 2 (2018) 557–566.
date_created: 2018-12-11T11:46:32Z
date_published: 2018-02-05T00:00:00Z
date_updated: 2023-09-11T14:10:57Z
day: '05'
ddc:
- '576'
department:
- _id: BeVi
doi: 10.1038/s41559-017-0459-1
external_id:
  isi:
  - '000426559600026'
file:
- access_level: open_access
  checksum: 874953136ac125e65f37971d3cabc5b7
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:08Z
  date_updated: 2020-07-14T12:46:30Z
  file_id: '4731'
  file_name: IST-2018-969-v1+1_2018_Huylmans_Hemimetabolous_genomes.pdf
  file_size: 3730583
  relation: main_file
file_date_updated: 2020-07-14T12:46:30Z
has_accepted_license: '1'
intvolume: '         2'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 557-566
publication: Nature Ecology and Evolution
publication_status: published
publisher: Springer Nature
publist_id: '7375'
pubrep_id: '969'
quality_controlled: '1'
related_material:
  record:
  - id: '9841'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Hemimetabolous genomes reveal molecular basis of termite eusociality
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2
year: '2018'
...
---
_id: '454'
abstract:
- lang: eng
  text: Direct reciprocity is a mechanism for cooperation among humans. Many of our
    daily interactions are repeated. We interact repeatedly with our family, friends,
    colleagues, members of the local and even global community. In the theory of repeated
    games, it is a tacit assumption that the various games that a person plays simultaneously
    have no effect on each other. Here we introduce a general framework that allows
    us to analyze “crosstalk” between a player’s concurrent games. In the presence
    of crosstalk, the action a person experiences in one game can alter the person’s
    decision in another. We find that crosstalk impedes the maintenance of cooperation
    and requires stronger levels of forgiveness. The magnitude of the effect depends
    on the population structure. In more densely connected social groups, crosstalk
    has a stronger effect. A harsh retaliator, such as Tit-for-Tat, is unable to counteract
    crosstalk. The crosstalk framework provides a unified interpretation of direct
    and upstream reciprocity in the context of repeated games.
acknowledgement: "This work was supported by the European Research Council (ERC) start
  grant 279307: Graph Games (C.K.), Austrian Science Fund (FWF) grant no P23499-N23
  (C.K.), FWF\r\nNFN grant no S11407-N23 RiSE/SHiNE (C.K.), Office of Naval Research
  grant N00014-16-1-2914 (M.A.N.), National Cancer Institute grant CA179991 (M.A.N.)
  and by the John Templeton Foundation. J.G.R. is supported by an Erwin Schrödinger
  fellowship\r\n(Austrian Science Fund FWF J-3996). C.H. acknowledges generous support
  from the\r\nISTFELLOW program. The Program for Evolutionary Dynamics is supported
  in part by\r\na gift from B Wu and Eric Larson."
article_number: '555'
article_processing_charge: No
author:
- first_name: Johannes
  full_name: Reiter, Johannes
  id: 4A918E98-F248-11E8-B48F-1D18A9856A87
  last_name: Reiter
  orcid: 0000-0002-0170-7353
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: David
  full_name: Rand, David
  last_name: Rand
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. Crosstalk in concurrent repeated
    games impedes direct reciprocity and requires stronger levels of forgiveness.
    <i>Nature Communications</i>. 2018;9(1). doi:<a href="https://doi.org/10.1038/s41467-017-02721-8">10.1038/s41467-017-02721-8</a>
  apa: Reiter, J., Hilbe, C., Rand, D., Chatterjee, K., &#38; Nowak, M. (2018). Crosstalk
    in concurrent repeated games impedes direct reciprocity and requires stronger
    levels of forgiveness. <i>Nature Communications</i>. Nature Publishing Group.
    <a href="https://doi.org/10.1038/s41467-017-02721-8">https://doi.org/10.1038/s41467-017-02721-8</a>
  chicago: Reiter, Johannes, Christian Hilbe, David Rand, Krishnendu Chatterjee, and
    Martin Nowak. “Crosstalk in Concurrent Repeated Games Impedes Direct Reciprocity
    and Requires Stronger Levels of Forgiveness.” <i>Nature Communications</i>. Nature
    Publishing Group, 2018. <a href="https://doi.org/10.1038/s41467-017-02721-8">https://doi.org/10.1038/s41467-017-02721-8</a>.
  ieee: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, and M. Nowak, “Crosstalk in concurrent
    repeated games impedes direct reciprocity and requires stronger levels of forgiveness,”
    <i>Nature Communications</i>, vol. 9, no. 1. Nature Publishing Group, 2018.
  ista: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. 2018. Crosstalk in concurrent
    repeated games impedes direct reciprocity and requires stronger levels of forgiveness.
    Nature Communications. 9(1), 555.
  mla: Reiter, Johannes, et al. “Crosstalk in Concurrent Repeated Games Impedes Direct
    Reciprocity and Requires Stronger Levels of Forgiveness.” <i>Nature Communications</i>,
    vol. 9, no. 1, 555, Nature Publishing Group, 2018, doi:<a href="https://doi.org/10.1038/s41467-017-02721-8">10.1038/s41467-017-02721-8</a>.
  short: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, M. Nowak, Nature Communications
    9 (2018).
date_created: 2018-12-11T11:46:34Z
date_published: 2018-02-07T00:00:00Z
date_updated: 2025-04-15T06:30:05Z
day: '07'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.1038/s41467-017-02721-8
ec_funded: 1
external_id:
  isi:
  - '000424318200001'
file:
- access_level: open_access
  checksum: b6b90367545b4c615891c960ab0567f1
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:18Z
  date_updated: 2020-07-14T12:46:31Z
  file_id: '4741'
  file_name: IST-2018-964-v1+1_2018_Hilbe_Crosstalk_in.pdf
  file_size: 843646
  relation: main_file
file_date_updated: 2020-07-14T12:46:31Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '7368'
pubrep_id: '964'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Crosstalk in concurrent repeated games impedes direct reciprocity and requires
  stronger levels of forgiveness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2018'
...
---
_id: '455'
abstract:
- lang: eng
  text: The derivation of effective evolution equations is central to the study of
    non-stationary quantum many-body systems, and widely used in contexts such as
    superconductivity, nuclear physics, Bose–Einstein condensation and quantum chemistry.
    We reformulate the Dirac–Frenkel approximation principle in terms of reduced density
    matrices and apply it to fermionic and bosonic many-body systems. We obtain the
    Bogoliubov–de Gennes and Hartree–Fock–Bogoliubov equations, respectively. While
    we do not prove quantitative error estimates, our formulation does show that the
    approximation is optimal within the class of quasifree states. Furthermore, we
    prove well-posedness of the Bogoliubov–de Gennes equations in energy space and
    discuss conserved quantities
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). The authors acknowledge support by ERC Advanced Grant 321029 and
  by VILLUM FONDEN via the QMATH Centre of Excellence (Grant No. 10059). The authors
  would like to thank Sébastien Breteaux, Enno Lenzmann, Mathieu Lewin and Jochen
  Schmid for comments and discussions about well-posedness of the Bogoliubov–de Gennes
  equations.
alternative_title:
- Annales Henri Poincare
article_processing_charge: No
author:
- first_name: Niels P
  full_name: Benedikter, Niels P
  id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
  last_name: Benedikter
  orcid: 0000-0002-1071-6091
- first_name: Jérémy
  full_name: Sok, Jérémy
  last_name: Sok
- first_name: Jan
  full_name: Solovej, Jan
  last_name: Solovej
citation:
  ama: Benedikter NP, Sok J, Solovej J. The Dirac–Frenkel principle for reduced density
    matrices and the Bogoliubov–de Gennes equations. <i>Annales Henri Poincare</i>.
    2018;19(4):1167-1214. doi:<a href="https://doi.org/10.1007/s00023-018-0644-z">10.1007/s00023-018-0644-z</a>
  apa: Benedikter, N. P., Sok, J., &#38; Solovej, J. (2018). The Dirac–Frenkel principle
    for reduced density matrices and the Bogoliubov–de Gennes equations. <i>Annales
    Henri Poincare</i>. Birkhäuser. <a href="https://doi.org/10.1007/s00023-018-0644-z">https://doi.org/10.1007/s00023-018-0644-z</a>
  chicago: Benedikter, Niels P, Jérémy Sok, and Jan Solovej. “The Dirac–Frenkel Principle
    for Reduced Density Matrices and the Bogoliubov–de Gennes Equations.” <i>Annales
    Henri Poincare</i>. Birkhäuser, 2018. <a href="https://doi.org/10.1007/s00023-018-0644-z">https://doi.org/10.1007/s00023-018-0644-z</a>.
  ieee: N. P. Benedikter, J. Sok, and J. Solovej, “The Dirac–Frenkel principle for
    reduced density matrices and the Bogoliubov–de Gennes equations,” <i>Annales Henri
    Poincare</i>, vol. 19, no. 4. Birkhäuser, pp. 1167–1214, 2018.
  ista: Benedikter NP, Sok J, Solovej J. 2018. The Dirac–Frenkel principle for reduced
    density matrices and the Bogoliubov–de Gennes equations. Annales Henri Poincare.
    19(4), 1167–1214.
  mla: Benedikter, Niels P., et al. “The Dirac–Frenkel Principle for Reduced Density
    Matrices and the Bogoliubov–de Gennes Equations.” <i>Annales Henri Poincare</i>,
    vol. 19, no. 4, Birkhäuser, 2018, pp. 1167–214, doi:<a href="https://doi.org/10.1007/s00023-018-0644-z">10.1007/s00023-018-0644-z</a>.
  short: N.P. Benedikter, J. Sok, J. Solovej, Annales Henri Poincare 19 (2018) 1167–1214.
corr_author: '1'
date_created: 2018-12-11T11:46:34Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2024-10-09T20:58:43Z
day: '01'
ddc:
- '510'
- '539'
department:
- _id: RoSe
doi: 10.1007/s00023-018-0644-z
external_id:
  isi:
  - '000427578900006'
file:
- access_level: open_access
  checksum: 883eeccba8384ad7fcaa28761d99a0fa
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:57Z
  date_updated: 2020-07-14T12:46:31Z
  file_id: '4914'
  file_name: IST-2018-993-v1+1_2018_Benedikter_Dirac.pdf
  file_size: 923252
  relation: main_file
file_date_updated: 2020-07-14T12:46:31Z
has_accepted_license: '1'
intvolume: '        19'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1167 - 1214
publication: Annales Henri Poincare
publication_status: published
publisher: Birkhäuser
publist_id: '7367'
pubrep_id: '993'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de
  Gennes equations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 19
year: '2018'
...
---
_id: '456'
abstract:
- lang: eng
  text: 'Inhibition of the endoplasmic reticulum stress pathway may hold the key to
    Zika virus-associated microcephaly treatment. '
article_number: eaar7514
author:
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
citation:
  ama: 'Novarino G. Zika-associated microcephaly: Reduce the stress and race for the
    treatment. <i>Science Translational Medicine</i>. 2018;10(423). doi:<a href="https://doi.org/10.1126/scitranslmed.aar7514">10.1126/scitranslmed.aar7514</a>'
  apa: 'Novarino, G. (2018). Zika-associated microcephaly: Reduce the stress and race
    for the treatment. <i>Science Translational Medicine</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/scitranslmed.aar7514">https://doi.org/10.1126/scitranslmed.aar7514</a>'
  chicago: 'Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race
    for the Treatment.” <i>Science Translational Medicine</i>. American Association
    for the Advancement of Science, 2018. <a href="https://doi.org/10.1126/scitranslmed.aar7514">https://doi.org/10.1126/scitranslmed.aar7514</a>.'
  ieee: 'G. Novarino, “Zika-associated microcephaly: Reduce the stress and race for
    the treatment,” <i>Science Translational Medicine</i>, vol. 10, no. 423. American
    Association for the Advancement of Science, 2018.'
  ista: 'Novarino G. 2018. Zika-associated microcephaly: Reduce the stress and race
    for the treatment. Science Translational Medicine. 10(423), eaar7514.'
  mla: 'Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race
    for the Treatment.” <i>Science Translational Medicine</i>, vol. 10, no. 423, eaar7514,
    American Association for the Advancement of Science, 2018, doi:<a href="https://doi.org/10.1126/scitranslmed.aar7514">10.1126/scitranslmed.aar7514</a>.'
  short: G. Novarino, Science Translational Medicine 10 (2018).
corr_author: '1'
date_created: 2018-12-11T11:46:34Z
date_published: 2018-01-10T00:00:00Z
date_updated: 2024-10-09T20:58:46Z
day: '10'
department:
- _id: GaNo
doi: 10.1126/scitranslmed.aar7514
intvolume: '        10'
issue: '423'
language:
- iso: eng
month: '01'
oa_version: None
publication: Science Translational Medicine
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '7365'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Zika-associated microcephaly: Reduce the stress and race for the treatment'
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2018'
...
---
_id: '458'
abstract:
- lang: eng
  text: We consider congruences of straight lines in a plane with the combinatorics
    of the square grid, with all elementary quadrilaterals possessing an incircle.
    It is shown that all the vertices of such nets (we call them incircular or IC-nets)
    lie on confocal conics. Our main new results are on checkerboard IC-nets in the
    plane. These are congruences of straight lines in the plane with the combinatorics
    of the square grid, combinatorially colored as a checkerboard, such that all black
    coordinate quadrilaterals possess inscribed circles. We show how this larger class
    of IC-nets appears quite naturally in Laguerre geometry of oriented planes and
    spheres and leads to new remarkable incidence theorems. Most of our results are
    valid in hyperbolic and spherical geometries as well. We present also generalizations
    in spaces of higher dimension, called checkerboard IS-nets. The construction of
    these nets is based on a new 9 inspheres incidence theorem.
acknowledgement: DFG Collaborative Research Center TRR 109 “Discretization in Geometry
  and Dynamics”; People Programme (Marie Curie Actions) of the European Union’s Seventh
  Framework Programme (FP7/2007-2013) REA grant agreement n◦[291734]
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Alexander
  full_name: Bobenko, Alexander
  last_name: Bobenko
citation:
  ama: Akopyan A, Bobenko A. Incircular nets and confocal conics. <i>Transactions
    of the American Mathematical Society</i>. 2018;370(4):2825-2854. doi:<a href="https://doi.org/10.1090/tran/7292">10.1090/tran/7292</a>
  apa: Akopyan, A., &#38; Bobenko, A. (2018). Incircular nets and confocal conics.
    <i>Transactions of the American Mathematical Society</i>. American Mathematical
    Society. <a href="https://doi.org/10.1090/tran/7292">https://doi.org/10.1090/tran/7292</a>
  chicago: Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal
    Conics.” <i>Transactions of the American Mathematical Society</i>. American Mathematical
    Society, 2018. <a href="https://doi.org/10.1090/tran/7292">https://doi.org/10.1090/tran/7292</a>.
  ieee: A. Akopyan and A. Bobenko, “Incircular nets and confocal conics,” <i>Transactions
    of the American Mathematical Society</i>, vol. 370, no. 4. American Mathematical
    Society, pp. 2825–2854, 2018.
  ista: Akopyan A, Bobenko A. 2018. Incircular nets and confocal conics. Transactions
    of the American Mathematical Society. 370(4), 2825–2854.
  mla: Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal Conics.”
    <i>Transactions of the American Mathematical Society</i>, vol. 370, no. 4, American
    Mathematical Society, 2018, pp. 2825–54, doi:<a href="https://doi.org/10.1090/tran/7292">10.1090/tran/7292</a>.
  short: A. Akopyan, A. Bobenko, Transactions of the American Mathematical Society
    370 (2018) 2825–2854.
corr_author: '1'
date_created: 2018-12-11T11:46:35Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2025-06-04T08:06:10Z
day: '01'
department:
- _id: HeEd
doi: 10.1090/tran/7292
ec_funded: 1
external_id:
  arxiv:
  - '1602.04637'
  isi:
  - '000423197800019'
intvolume: '       370'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.04637
month: '04'
oa: 1
oa_version: Preprint
page: 2825 - 2854
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Transactions of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '7363'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Incircular nets and confocal conics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 370
year: '2018'
...
---
_id: '6459'
article_processing_charge: No
author:
- first_name: Barbara
  full_name: Petritsch, Barbara
  id: 406048EC-F248-11E8-B48F-1D18A9856A87
  last_name: Petritsch
  orcid: 0000-0003-2724-4614
citation:
  ama: Petritsch B. <i>Open Access at IST Austria 2009-2017</i>. IST Austria; 2018.
    doi:<a href="https://doi.org/10.5281/zenodo.1410279">10.5281/zenodo.1410279</a>
  apa: 'Petritsch, B. (2018). <i>Open Access at IST Austria 2009-2017</i>. Presented
    at the OAT: Open Access Tage, Graz, Austria: IST Austria. <a href="https://doi.org/10.5281/zenodo.1410279">https://doi.org/10.5281/zenodo.1410279</a>'
  chicago: Petritsch, Barbara. <i>Open Access at IST Austria 2009-2017</i>. IST Austria,
    2018. <a href="https://doi.org/10.5281/zenodo.1410279">https://doi.org/10.5281/zenodo.1410279</a>.
  ieee: B. Petritsch, <i>Open Access at IST Austria 2009-2017</i>. IST Austria, 2018.
  ista: Petritsch B. 2018. Open Access at IST Austria 2009-2017, IST Austria,p.
  mla: Petritsch, Barbara. <i>Open Access at IST Austria 2009-2017</i>. IST Austria,
    2018, doi:<a href="https://doi.org/10.5281/zenodo.1410279">10.5281/zenodo.1410279</a>.
  short: B. Petritsch, Open Access at IST Austria 2009-2017, IST Austria, 2018.
conference:
  end_date: 2018-09-26
  location: Graz, Austria
  name: 'OAT: Open Access Tage'
  start_date: 2018-09-24
date_created: 2019-05-16T07:27:14Z
date_published: 2018-09-24T00:00:00Z
date_updated: 2026-03-31T12:35:03Z
day: '24'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.5281/zenodo.1410279
file:
- access_level: open_access
  checksum: 9063ab4d10ea93353c3a03bbf53fbcf1
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-16T07:26:25Z
  date_updated: 2020-07-14T12:47:30Z
  file_id: '6460'
  file_name: Poster_Beitrag_125_Petritsch.pdf
  file_size: 1967778
  relation: main_file
file_date_updated: 2020-07-14T12:47:30Z
has_accepted_license: '1'
keyword:
- Open Access
- Publication Analysis
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication_status: published
publisher: IST Austria
status: public
title: Open Access at IST Austria 2009-2017
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference_poster
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '415'
abstract:
- lang: eng
  text: Recently it was shown that a molecule rotating in a quantum solvent can be
    described in terms of the “angulon” quasiparticle [M. Lemeshko, Phys. Rev. Lett.
    118, 095301 (2017)]. Here we extend the angulon theory to the case of molecules
    possessing an additional spin-1/2 degree of freedom and study the behavior of
    the system in the presence of a static magnetic field. We show that exchange of
    angular momentum between the molecule and the solvent can be altered by the field,
    even though the solvent itself is non-magnetic. In particular, we demonstrate
    a possibility to control resonant emission of phonons with a given angular momentum
    using a magnetic field.
acknowledgement: "We acknowledge insightful discussions with Giacomo Bighin, Igor
  Cherepanov, Johan Mentink, and Enderalp Yakaboylu. This work was supported by the
  Austrian Science Fund (FWF), Project No. P29902-N27. W.R. was supported by the Polish
  Ministry of Science and Higher Education Grant No. MNISW/2016/DIR/285/NN and by
  the European Union’s Horizon 2020 research and innovation programme under the Marie
  Skłodowska-Curie Grant Agreement No. 665385.\r\n"
article_number: '104307'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Wojciech
  full_name: Rzadkowski, Wojciech
  id: 48C55298-F248-11E8-B48F-1D18A9856A87
  last_name: Rzadkowski
  orcid: 0000-0002-1106-4419
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Rzadkowski W, Lemeshko M. Effect of a magnetic field on molecule–solvent angular
    momentum transfer. <i>The Journal of Chemical Physics</i>. 2018;148(10). doi:<a
    href="https://doi.org/10.1063/1.5017591">10.1063/1.5017591</a>
  apa: Rzadkowski, W., &#38; Lemeshko, M. (2018). Effect of a magnetic field on molecule–solvent
    angular momentum transfer. <i>The Journal of Chemical Physics</i>. AIP Publishing.
    <a href="https://doi.org/10.1063/1.5017591">https://doi.org/10.1063/1.5017591</a>
  chicago: Rzadkowski, Wojciech, and Mikhail Lemeshko. “Effect of a Magnetic Field
    on Molecule–Solvent Angular Momentum Transfer.” <i>The Journal of Chemical Physics</i>.
    AIP Publishing, 2018. <a href="https://doi.org/10.1063/1.5017591">https://doi.org/10.1063/1.5017591</a>.
  ieee: W. Rzadkowski and M. Lemeshko, “Effect of a magnetic field on molecule–solvent
    angular momentum transfer,” <i>The Journal of Chemical Physics</i>, vol. 148,
    no. 10. AIP Publishing, 2018.
  ista: Rzadkowski W, Lemeshko M. 2018. Effect of a magnetic field on molecule–solvent
    angular momentum transfer. The Journal of Chemical Physics. 148(10), 104307.
  mla: Rzadkowski, Wojciech, and Mikhail Lemeshko. “Effect of a Magnetic Field on
    Molecule–Solvent Angular Momentum Transfer.” <i>The Journal of Chemical Physics</i>,
    vol. 148, no. 10, 104307, AIP Publishing, 2018, doi:<a href="https://doi.org/10.1063/1.5017591">10.1063/1.5017591</a>.
  short: W. Rzadkowski, M. Lemeshko, The Journal of Chemical Physics 148 (2018).
date_created: 2018-12-11T11:46:21Z
date_published: 2018-03-14T00:00:00Z
date_updated: 2026-04-07T14:20:12Z
day: '14'
department:
- _id: MiLe
doi: 10.1063/1.5017591
ec_funded: 1
external_id:
  arxiv:
  - '1711.09904'
  isi:
  - '000427517200065'
intvolume: '       148'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1711.09904
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 26031614-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29902
  name: Quantum rotations in the presence of a many-body environment
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: The Journal of Chemical Physics
publication_status: published
publisher: AIP Publishing
publist_id: '7408'
quality_controlled: '1'
related_material:
  record:
  - id: '10759'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Effect of a magnetic field on molecule–solvent angular momentum transfer
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 148
year: '2018'
...
---
_id: '141'
abstract:
- lang: eng
  text: 'Given a model and a specification, the fundamental model-checking problem
    asks for algorithmic verification of whether the model satisfies the specification.
    We consider graphs and Markov decision processes (MDPs), which are fundamental
    models for reactive systems. One of the very basic specifications that arise in
    verification of reactive systems is the strong fairness (aka Streett) objective.
    Given different types of requests and corresponding grants, the objective requires
    that for each type, if the request event happens infinitely often, then the corresponding
    grant event must also happen infinitely often. All ω -regular objectives can be
    expressed as Streett objectives and hence they are canonical in verification.
    To handle the state-space explosion, symbolic algorithms are required that operate
    on a succinct implicit representation of the system rather than explicitly accessing
    the system. While explicit algorithms for graphs and MDPs with Streett objectives
    have been widely studied, there has been no improvement of the basic symbolic
    algorithms. The worst-case numbers of symbolic steps required for the basic symbolic
    algorithms are as follows: quadratic for graphs and cubic for MDPs. In this work
    we present the first sub-quadratic symbolic algorithm for graphs with Streett
    objectives, and our algorithm is sub-quadratic even for MDPs. Based on our algorithmic
    insights we present an implementation of the new symbolic approach and show that
    it improves the existing approach on several academic benchmark examples.'
acknowledgement: 'Acknowledgements. K. C. and M. H. are partially supported by the
  Vienna Science and Technology Fund (WWTF) grant ICT15-003. K. C. is partially supported
  by the Austrian Science Fund (FWF): S11407-N23 (RiSE/SHiNE), and an ERC Start Grant
  (279307: Graph Games). V. T. is partially supported by the European Union’s Horizon
  2020 research and innovation programme under the Marie Sk lodowska-Curie Grant Agreement
  No. 665385.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Veronika
  full_name: Loitzenbauer, Veronika
  last_name: Loitzenbauer
- first_name: Simin
  full_name: Oraee, Simin
  last_name: Oraee
- first_name: Viktor
  full_name: Toman, Viktor
  id: 3AF3DA7C-F248-11E8-B48F-1D18A9856A87
  last_name: Toman
  orcid: 0000-0001-9036-063X
citation:
  ama: 'Chatterjee K, Henzinger M, Loitzenbauer V, Oraee S, Toman V. Symbolic algorithms
    for graphs and Markov decision processes with fairness objectives. In: Vol 10982.
    Springer; 2018:178-197. doi:<a href="https://doi.org/10.1007/978-3-319-96142-2_13">10.1007/978-3-319-96142-2_13</a>'
  apa: 'Chatterjee, K., Henzinger, M., Loitzenbauer, V., Oraee, S., &#38; Toman, V.
    (2018). Symbolic algorithms for graphs and Markov decision processes with fairness
    objectives (Vol. 10982, pp. 178–197). Presented at the CAV: Computer Aided Verification,
    Oxford, United Kingdom: Springer. <a href="https://doi.org/10.1007/978-3-319-96142-2_13">https://doi.org/10.1007/978-3-319-96142-2_13</a>'
  chicago: Chatterjee, Krishnendu, Monika Henzinger, Veronika Loitzenbauer, Simin
    Oraee, and Viktor Toman. “Symbolic Algorithms for Graphs and Markov Decision Processes
    with Fairness Objectives,” 10982:178–97. Springer, 2018. <a href="https://doi.org/10.1007/978-3-319-96142-2_13">https://doi.org/10.1007/978-3-319-96142-2_13</a>.
  ieee: 'K. Chatterjee, M. Henzinger, V. Loitzenbauer, S. Oraee, and V. Toman, “Symbolic
    algorithms for graphs and Markov decision processes with fairness objectives,”
    presented at the CAV: Computer Aided Verification, Oxford, United Kingdom, 2018,
    vol. 10982, pp. 178–197.'
  ista: 'Chatterjee K, Henzinger M, Loitzenbauer V, Oraee S, Toman V. 2018. Symbolic
    algorithms for graphs and Markov decision processes with fairness objectives.
    CAV: Computer Aided Verification, LNCS, vol. 10982, 178–197.'
  mla: Chatterjee, Krishnendu, et al. <i>Symbolic Algorithms for Graphs and Markov
    Decision Processes with Fairness Objectives</i>. Vol. 10982, Springer, 2018, pp.
    178–97, doi:<a href="https://doi.org/10.1007/978-3-319-96142-2_13">10.1007/978-3-319-96142-2_13</a>.
  short: K. Chatterjee, M. Henzinger, V. Loitzenbauer, S. Oraee, V. Toman, in:, Springer,
    2018, pp. 178–197.
conference:
  end_date: 2018-07-17
  location: Oxford, United Kingdom
  name: 'CAV: Computer Aided Verification'
  start_date: 2018-07-14
date_created: 2018-12-11T11:44:51Z
date_published: 2018-07-18T00:00:00Z
date_updated: 2026-04-08T07:00:31Z
day: '18'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/978-3-319-96142-2_13
ec_funded: 1
external_id:
  isi:
  - '000491469700013'
file:
- access_level: open_access
  checksum: 1a6ffa4febe8bb8ac28be3adb3eafebc
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-18T08:52:38Z
  date_updated: 2020-07-14T12:44:53Z
  file_id: '5737'
  file_name: 2018_LNCS_Chatterjee.pdf
  file_size: 675606
  relation: main_file
file_date_updated: 2020-07-14T12:44:53Z
has_accepted_license: '1'
intvolume: '     10982'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 178-197
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
  grant_number: ICT15-003
  name: Efficient Algorithms for Computer Aided Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_status: published
publisher: Springer
publist_id: '7782'
quality_controlled: '1'
related_material:
  record:
  - id: '10199'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Symbolic algorithms for graphs and Markov decision processes with fairness
  objectives
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10982
year: '2018'
...
---
_id: '5965'
abstract:
- lang: eng
  text: Relaxed concurrent data structures have become increasingly popular, due to
    their scalability in graph processing and machine learning applications (\citeNguyen13,
    gonzalez2012powergraph ). Despite considerable interest, there exist families
    of natural, high performing randomized relaxed concurrent data structures, such
    as the popular MultiQueue~\citeMQ pattern for implementing relaxed priority queue
    data structures, for which no guarantees are known in the concurrent setting~\citeAKLN17.
    Our main contribution is in showing for the first time that, under a set of analytic
    assumptions, a family of relaxed concurrent data structures, including variants
    of MultiQueues, but also a new approximate counting algorithm we call the MultiCounter,
    provides strong probabilistic guarantees on the degree of relaxation with respect
    to the sequential specification, in arbitrary concurrent executions. We formalize
    these guarantees via a new correctness condition called distributional linearizability,
    tailored to concurrent implementations with randomized relaxations. Our result
    is based on a new analysis of an asynchronous variant of the classic power-of-two-choices
    load balancing algorithm, in which placement choices can be based on inconsistent,
    outdated information (this result may be of independent interest). We validate
    our results empirically, showing that the MultiCounter algorithm can implement
    scalable relaxed timestamps.
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Trevor A
  full_name: Brown, Trevor A
  id: 3569F0A0-F248-11E8-B48F-1D18A9856A87
  last_name: Brown
- first_name: Justin
  full_name: Kopinsky, Justin
  last_name: Kopinsky
- first_name: Jerry Z.
  full_name: Li, Jerry Z.
  last_name: Li
- first_name: Giorgi
  full_name: Nadiradze, Giorgi
  last_name: Nadiradze
citation:
  ama: 'Alistarh D-A, Brown TA, Kopinsky J, Li JZ, Nadiradze G. Distributionally linearizable
    data structures. In: <i>Proceedings of the 30th on Symposium on Parallelism in
    Algorithms and Architectures  - SPAA ’18</i>. ACM; 2018:133-142. doi:<a href="https://doi.org/10.1145/3210377.3210411">10.1145/3210377.3210411</a>'
  apa: 'Alistarh, D.-A., Brown, T. A., Kopinsky, J., Li, J. Z., &#38; Nadiradze, G.
    (2018). Distributionally linearizable data structures. In <i>Proceedings of the
    30th on Symposium on Parallelism in Algorithms and Architectures  - SPAA ’18</i>
    (pp. 133–142). Vienna, Austria: ACM. <a href="https://doi.org/10.1145/3210377.3210411">https://doi.org/10.1145/3210377.3210411</a>'
  chicago: Alistarh, Dan-Adrian, Trevor A Brown, Justin Kopinsky, Jerry Z. Li, and
    Giorgi Nadiradze. “Distributionally Linearizable Data Structures.” In <i>Proceedings
    of the 30th on Symposium on Parallelism in Algorithms and Architectures  - SPAA
    ’18</i>, 133–42. ACM, 2018. <a href="https://doi.org/10.1145/3210377.3210411">https://doi.org/10.1145/3210377.3210411</a>.
  ieee: D.-A. Alistarh, T. A. Brown, J. Kopinsky, J. Z. Li, and G. Nadiradze, “Distributionally
    linearizable data structures,” in <i>Proceedings of the 30th on Symposium on Parallelism
    in Algorithms and Architectures  - SPAA ’18</i>, Vienna, Austria, 2018, pp. 133–142.
  ista: 'Alistarh D-A, Brown TA, Kopinsky J, Li JZ, Nadiradze G. 2018. Distributionally
    linearizable data structures. Proceedings of the 30th on Symposium on Parallelism
    in Algorithms and Architectures  - SPAA ’18. SPAA: Symposium on Parallelism in
    Algorithms and Architectures, 133–142.'
  mla: Alistarh, Dan-Adrian, et al. “Distributionally Linearizable Data Structures.”
    <i>Proceedings of the 30th on Symposium on Parallelism in Algorithms and Architectures 
    - SPAA ’18</i>, ACM, 2018, pp. 133–42, doi:<a href="https://doi.org/10.1145/3210377.3210411">10.1145/3210377.3210411</a>.
  short: D.-A. Alistarh, T.A. Brown, J. Kopinsky, J.Z. Li, G. Nadiradze, in:, Proceedings
    of the 30th on Symposium on Parallelism in Algorithms and Architectures  - SPAA
    ’18, ACM, 2018, pp. 133–142.
conference:
  end_date: 2018-07-18
  location: Vienna, Austria
  name: 'SPAA: Symposium on Parallelism in Algorithms and Architectures'
  start_date: 2018-07-16
date_created: 2019-02-13T10:17:19Z
date_published: 2018-07-16T00:00:00Z
date_updated: 2026-04-08T07:00:45Z
day: '16'
department:
- _id: DaAl
doi: 10.1145/3210377.3210411
external_id:
  arxiv:
  - '1804.01018'
  isi:
  - '000545269600016'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.01018
month: '07'
oa: 1
oa_version: Preprint
page: 133-142
publication: Proceedings of the 30th on Symposium on Parallelism in Algorithms and
  Architectures  - SPAA '18
publication_identifier:
  isbn:
  - '9781450357999'
publication_status: published
publisher: ACM
quality_controlled: '1'
related_material:
  record:
  - id: '10429'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Distributionally linearizable data structures
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '187'
abstract:
- lang: eng
  text: 'Given a locally finite X ⊆ ℝd and a radius r ≥ 0, the k-fold cover of X and
    r consists of all points in ℝd that have k or more points of X within distance
    r. We consider two filtrations - one in scale obtained by fixing k and increasing
    r, and the other in depth obtained by fixing r and decreasing k - and we compute
    the persistence diagrams of both. While standard methods suffice for the filtration
    in scale, we need novel geometric and topological concepts for the filtration
    in depth. In particular, we introduce a rhomboid tiling in ℝd+1 whose horizontal
    integer slices are the order-k Delaunay mosaics of X, and construct a zigzag module
    from Delaunay mosaics that is isomorphic to the persistence module of the multi-covers. '
acknowledgement: This work is partially supported by the DFG Collaborative Research
  Center TRR 109, ‘Discretization in Geometry and Dynamics’, through grant no. I02979-N35
  of the Austrian Science Fund (FWF).
alternative_title:
- LIPIcs
article_number: '34'
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Georg F
  full_name: Osang, Georg F
  id: 464B40D6-F248-11E8-B48F-1D18A9856A87
  last_name: Osang
  orcid: 0000-0002-8882-5116
citation:
  ama: 'Edelsbrunner H, Osang GF. The multi-cover persistence of Euclidean balls.
    In: Vol 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2018.34">10.4230/LIPIcs.SoCG.2018.34</a>'
  apa: 'Edelsbrunner, H., &#38; Osang, G. F. (2018). The multi-cover persistence of
    Euclidean balls (Vol. 99). Presented at the SoCG: Symposium on Computational Geometry,
    Budapest, Hungary: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2018.34">https://doi.org/10.4230/LIPIcs.SoCG.2018.34</a>'
  chicago: Edelsbrunner, Herbert, and Georg F Osang. “The Multi-Cover Persistence
    of Euclidean Balls,” Vol. 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2018. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2018.34">https://doi.org/10.4230/LIPIcs.SoCG.2018.34</a>.
  ieee: 'H. Edelsbrunner and G. F. Osang, “The multi-cover persistence of Euclidean
    balls,” presented at the SoCG: Symposium on Computational Geometry, Budapest,
    Hungary, 2018, vol. 99.'
  ista: 'Edelsbrunner H, Osang GF. 2018. The multi-cover persistence of Euclidean
    balls. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 99, 34.'
  mla: Edelsbrunner, Herbert, and Georg F. Osang. <i>The Multi-Cover Persistence of
    Euclidean Balls</i>. Vol. 99, 34, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2018, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2018.34">10.4230/LIPIcs.SoCG.2018.34</a>.
  short: H. Edelsbrunner, G.F. Osang, in:, Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2018.
conference:
  end_date: 2018-06-14
  location: Budapest, Hungary
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2018-06-11
date_created: 2018-12-11T11:45:05Z
date_published: 2018-06-11T00:00:00Z
date_updated: 2026-04-08T07:01:29Z
day: '11'
ddc:
- '516'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2018.34
file:
- access_level: open_access
  checksum: d8c0533ad0018eb4ed1077475eb8fc18
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-18T09:27:22Z
  date_updated: 2020-07-14T12:45:19Z
  file_id: '5738'
  file_name: 2018_LIPIcs_Edelsbrunner_Osang.pdf
  file_size: 528018
  relation: main_file
file_date_updated: 2020-07-14T12:45:19Z
has_accepted_license: '1'
intvolume: '        99'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7732'
quality_controlled: '1'
related_material:
  record:
  - id: '9317'
    relation: later_version
    status: public
  - id: '9056'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: The multi-cover persistence of Euclidean balls
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 99
year: '2018'
...
---
OA_place: publisher
OA_type: gold
_id: '133'
abstract:
- lang: eng
  text: Synchronous programs are easy to specify because the side effects of an operation
    are finished by the time the invocation of the operation returns to the caller.
    Asynchronous programs, on the other hand, are difficult to specify because there
    are side effects due to pending computation scheduled as a result of the invocation
    of an operation. They are also difficult to verify because of the large number
    of possible interleavings of concurrent computation threads. We present synchronization,
    a new proof rule that simplifies the verification of asynchronous programs by
    introducing the fiction, for proof purposes, that asynchronous operations complete
    synchronously. Synchronization summarizes an asynchronous computation as immediate
    atomic effect. Modular verification is enabled via pending asynchronous calls
    in atomic summaries, and a complementary proof rule that eliminates pending asynchronous
    calls when components and their specifications are composed. We evaluate synchronization
    in the context of a multi-layer refinement verification methodology on a collection
    of benchmark programs.
alternative_title:
- LIPIcs
article_number: '21'
article_processing_charge: No
author:
- first_name: Bernhard
  full_name: Kragl, Bernhard
  id: 320FC952-F248-11E8-B48F-1D18A9856A87
  last_name: Kragl
  orcid: 0000-0001-7745-9117
- first_name: Shaz
  full_name: Qadeer, Shaz
  last_name: Qadeer
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: 'Kragl B, Qadeer S, Henzinger TA. Synchronizing the asynchronous. In: Vol 118.
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2018.21">10.4230/LIPIcs.CONCUR.2018.21</a>'
  apa: 'Kragl, B., Qadeer, S., &#38; Henzinger, T. A. (2018). Synchronizing the asynchronous
    (Vol. 118). Presented at the CONCUR: International Conference on Concurrency Theory,
    Beijing, China: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2018.21">https://doi.org/10.4230/LIPIcs.CONCUR.2018.21</a>'
  chicago: Kragl, Bernhard, Shaz Qadeer, and Thomas A Henzinger. “Synchronizing the
    Asynchronous,” Vol. 118. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018.
    <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2018.21">https://doi.org/10.4230/LIPIcs.CONCUR.2018.21</a>.
  ieee: 'B. Kragl, S. Qadeer, and T. A. Henzinger, “Synchronizing the asynchronous,”
    presented at the CONCUR: International Conference on Concurrency Theory, Beijing,
    China, 2018, vol. 118.'
  ista: 'Kragl B, Qadeer S, Henzinger TA. 2018. Synchronizing the asynchronous. CONCUR:
    International Conference on Concurrency Theory, LIPIcs, vol. 118, 21.'
  mla: Kragl, Bernhard, et al. <i>Synchronizing the Asynchronous</i>. Vol. 118, 21,
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2018.21">10.4230/LIPIcs.CONCUR.2018.21</a>.
  short: B. Kragl, S. Qadeer, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2018.
conference:
  end_date: 2018-09-07
  location: Beijing, China
  name: 'CONCUR: International Conference on Concurrency Theory'
  start_date: 2018-09-04
date_created: 2018-12-11T11:44:48Z
date_published: 2018-08-13T00:00:00Z
date_updated: 2026-04-08T07:23:52Z
day: '13'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.CONCUR.2018.21
extern: '1'
file:
- access_level: open_access
  checksum: c90895f4c5fafc18ddc54d1c8848077e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:18:46Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5368'
  file_name: IST-2018-853-v2+2_concur2018.pdf
  file_size: 745438
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '       118'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25F2ACDE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Rigorous Systems Engineering
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Moderne Concurrency Paradigms
publication_identifier:
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7790'
pubrep_id: '1039'
quality_controlled: '1'
related_material:
  record:
  - id: '6426'
    relation: earlier_version
    status: public
  - id: '8332'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Synchronizing the asynchronous
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  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 118
year: '2018'
...
---
_id: '160'
abstract:
- lang: eng
  text: We present layered concurrent programs, a compact and expressive notation
    for specifying refinement proofs of concurrent programs. A layered concurrent
    program specifies a sequence of connected concurrent programs, from most concrete
    to most abstract, such that common parts of different programs are written exactly
    once. These programs are expressed in the ordinary syntax of imperative concurrent
    programs using gated atomic actions, sequencing, choice, and (recursive) procedure
    calls. Each concurrent program is automatically extracted from the layered program.
    We reduce refinement to the safety of a sequence of concurrent checker programs,
    one each to justify the connection between every two consecutive concurrent programs.
    These checker programs are also automatically extracted from the layered program.
    Layered concurrent programs have been implemented in the CIVL verifier which has
    been successfully used for the verification of several complex concurrent programs.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Bernhard
  full_name: Kragl, Bernhard
  id: 320FC952-F248-11E8-B48F-1D18A9856A87
  last_name: Kragl
  orcid: 0000-0001-7745-9117
- first_name: Shaz
  full_name: Qadeer, Shaz
  last_name: Qadeer
citation:
  ama: 'Kragl B, Qadeer S. Layered Concurrent Programs. In: Vol 10981. Springer; 2018:79-102.
    doi:<a href="https://doi.org/10.1007/978-3-319-96145-3_5">10.1007/978-3-319-96145-3_5</a>'
  apa: 'Kragl, B., &#38; Qadeer, S. (2018). Layered Concurrent Programs (Vol. 10981,
    pp. 79–102). Presented at the CAV: Computer Aided Verification, Oxford, UK: Springer.
    <a href="https://doi.org/10.1007/978-3-319-96145-3_5">https://doi.org/10.1007/978-3-319-96145-3_5</a>'
  chicago: Kragl, Bernhard, and Shaz Qadeer. “Layered Concurrent Programs,” 10981:79–102.
    Springer, 2018. <a href="https://doi.org/10.1007/978-3-319-96145-3_5">https://doi.org/10.1007/978-3-319-96145-3_5</a>.
  ieee: 'B. Kragl and S. Qadeer, “Layered Concurrent Programs,” presented at the CAV:
    Computer Aided Verification, Oxford, UK, 2018, vol. 10981, pp. 79–102.'
  ista: 'Kragl B, Qadeer S. 2018. Layered Concurrent Programs. CAV: Computer Aided
    Verification, LNCS, vol. 10981, 79–102.'
  mla: Kragl, Bernhard, and Shaz Qadeer. <i>Layered Concurrent Programs</i>. Vol.
    10981, Springer, 2018, pp. 79–102, doi:<a href="https://doi.org/10.1007/978-3-319-96145-3_5">10.1007/978-3-319-96145-3_5</a>.
  short: B. Kragl, S. Qadeer, in:, Springer, 2018, pp. 79–102.
conference:
  end_date: 2018-07-17
  location: Oxford, UK
  name: 'CAV: Computer Aided Verification'
  start_date: 2018-07-14
date_created: 2018-12-11T11:44:57Z
date_published: 2018-07-18T00:00:00Z
date_updated: 2026-04-08T07:23:52Z
day: '18'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-319-96145-3_5
external_id:
  isi:
  - '000491481600005'
file:
- access_level: open_access
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  file_id: '5705'
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  file_size: 1603844
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file_date_updated: 2020-07-14T12:45:04Z
has_accepted_license: '1'
intvolume: '     10981'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 79 - 102
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '7761'
quality_controlled: '1'
related_material:
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scopus_import: '1'
status: public
title: Layered Concurrent Programs
tmp:
  image: /images/cc_by.png
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  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10981
year: '2018'
...
---
_id: '5751'
abstract:
- lang: eng
  text: 'Because of the intrinsic randomness of the evolutionary process, a mutant
    with a fitness advantage has some chance to be selected but no certainty. Any
    experiment that searches for advantageous mutants will lose many of them due to
    random drift. It is therefore of great interest to find population structures
    that improve the odds of advantageous mutants. Such structures are called amplifiers
    of natural selection: they increase the probability that advantageous mutants
    are selected. Arbitrarily strong amplifiers guarantee the selection of advantageous
    mutants, even for very small fitness advantage. Despite intensive research over
    the past decade, arbitrarily strong amplifiers have remained rare. Here we show
    how to construct a large variety of them. Our amplifiers are so simple that they
    could be useful in biotechnology, when optimizing biological molecules, or as
    a diagnostic tool, when searching for faster dividing cells or viruses. They could
    also occur in natural population structures.'
article_number: '71'
article_processing_charge: No
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin A.
  full_name: Nowak, Martin A.
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak MA. Construction of arbitrarily
    strong amplifiers of natural selection using evolutionary graph theory. <i>Communications
    Biology</i>. 2018;1(1). doi:<a href="https://doi.org/10.1038/s42003-018-0078-7">10.1038/s42003-018-0078-7</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. A. (2018). Construction
    of arbitrarily strong amplifiers of natural selection using evolutionary graph
    theory. <i>Communications Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-018-0078-7">https://doi.org/10.1038/s42003-018-0078-7</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    A. Nowak. “Construction of Arbitrarily Strong Amplifiers of Natural Selection
    Using Evolutionary Graph Theory.” <i>Communications Biology</i>. Springer Nature,
    2018. <a href="https://doi.org/10.1038/s42003-018-0078-7">https://doi.org/10.1038/s42003-018-0078-7</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. A. Nowak, “Construction
    of arbitrarily strong amplifiers of natural selection using evolutionary graph
    theory,” <i>Communications Biology</i>, vol. 1, no. 1. Springer Nature, 2018.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak MA. 2018. Construction of arbitrarily
    strong amplifiers of natural selection using evolutionary graph theory. Communications
    Biology. 1(1), 71.
  mla: Pavlogiannis, Andreas, et al. “Construction of Arbitrarily Strong Amplifiers
    of Natural Selection Using Evolutionary Graph Theory.” <i>Communications Biology</i>,
    vol. 1, no. 1, 71, Springer Nature, 2018, doi:<a href="https://doi.org/10.1038/s42003-018-0078-7">10.1038/s42003-018-0078-7</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M.A. Nowak, Communications Biology
    1 (2018).
date_created: 2018-12-18T13:22:58Z
date_published: 2018-06-14T00:00:00Z
date_updated: 2026-04-08T07:24:11Z
day: '14'
ddc:
- '004'
- '519'
- '576'
department:
- _id: KrCh
doi: 10.1038/s42003-018-0078-7
ec_funded: 1
external_id:
  isi:
  - '000461126500071'
file:
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  creator: dernst
  date_created: 2018-12-18T13:37:04Z
  date_updated: 2020-07-14T12:47:10Z
  file_id: '5752'
  file_name: 2018_CommBiology_Pavlogiannis.pdf
  file_size: 1804194
  relation: main_file
file_date_updated: 2020-07-14T12:47:10Z
has_accepted_license: '1'
intvolume: '         1'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Communications Biology
publication_identifier:
  issn:
  - 2399-3642
publication_status: published
publisher: Springer Nature
pubrep_id: '1045'
quality_controlled: '1'
related_material:
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    status: public
  - id: '7196'
    relation: part_of_dissertation
    status: public
scopus_import: '1'
status: public
title: Construction of arbitrarily strong amplifiers of natural selection using evolutionary
  graph theory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 1
year: '2018'
...
