---
_id: '463'
abstract:
- lang: eng
  text: We investigate transient behaviors induced by magnetic fields on the dynamics
    of the flow of a ferrofluid in the gap between two concentric, independently rotating
    cylinders. Without applying any magnetic fields, we uncover emergence of flow
    states constituted by a combination of a localized spiral state (SPIl) in the
    top and bottom of the annulus and different multi-cell flow states (SPI2v, SPI3v)
    with toroidally closed vortices in the interior of the bulk (SPIl+2v = SPIl +
    SPI2v and SPIl+3v = SPIl + SPI3v). However, when a magnetic field is presented,
    we observe the transient behaviors between multi-cell states passing through two
    critical thresholds in a strength of an axial (transverse) magnetic field. Before
    the first critical threshold of a magnetic field strength, multi-stable states
    with different number of cells could be observed. After the first critical threshold,
    we find the transient behavior between the three- and two-cell flow states. For
    more strength of magnetic field or after the second critical threshold, we discover
    that multi-cell states are disappeared and a localized spiral state remains to
    be stimulated. The studied transient behavior could be understood by the investigation
    of various quantities including a modal kinetic energy, a mode amplitude of the
    radial velocity, wavenumber, angular momentum, and torque. In addition, the emergence
    of new flow states and the transient behavior between their states in ferrofluidic
    flows indicate that richer and potentially controllable dynamics through magnetic
    fields could be possible in ferrofluic flow.
article_number: '113112'
article_processing_charge: No
article_type: original
author:
- first_name: Sebastian
  full_name: Altmeyer, Sebastian
  id: 2EE67FDC-F248-11E8-B48F-1D18A9856A87
  last_name: Altmeyer
  orcid: 0000-0001-5964-0203
- first_name: Younghae
  full_name: Do, Younghae
  last_name: Do
- first_name: Soorok
  full_name: Ryu, Soorok
  last_name: Ryu
citation:
  ama: Altmeyer S, Do Y, Ryu S. Transient behavior between multi-cell flow states
    in ferrofluidic Taylor-Couette flow. <i>Chaos</i>. 2017;27(11). doi:<a href="https://doi.org/10.1063/1.5002771">10.1063/1.5002771</a>
  apa: Altmeyer, S., Do, Y., &#38; Ryu, S. (2017). Transient behavior between multi-cell
    flow states in ferrofluidic Taylor-Couette flow. <i>Chaos</i>. AIP Publishing.
    <a href="https://doi.org/10.1063/1.5002771">https://doi.org/10.1063/1.5002771</a>
  chicago: Altmeyer, Sebastian, Younghae Do, and Soorok Ryu. “Transient Behavior between
    Multi-Cell Flow States in Ferrofluidic Taylor-Couette Flow.” <i>Chaos</i>. AIP
    Publishing, 2017. <a href="https://doi.org/10.1063/1.5002771">https://doi.org/10.1063/1.5002771</a>.
  ieee: S. Altmeyer, Y. Do, and S. Ryu, “Transient behavior between multi-cell flow
    states in ferrofluidic Taylor-Couette flow,” <i>Chaos</i>, vol. 27, no. 11. AIP
    Publishing, 2017.
  ista: Altmeyer S, Do Y, Ryu S. 2017. Transient behavior between multi-cell flow
    states in ferrofluidic Taylor-Couette flow. Chaos. 27(11), 113112.
  mla: Altmeyer, Sebastian, et al. “Transient Behavior between Multi-Cell Flow States
    in Ferrofluidic Taylor-Couette Flow.” <i>Chaos</i>, vol. 27, no. 11, 113112, AIP
    Publishing, 2017, doi:<a href="https://doi.org/10.1063/1.5002771">10.1063/1.5002771</a>.
  short: S. Altmeyer, Y. Do, S. Ryu, Chaos 27 (2017).
date_created: 2018-12-11T11:46:37Z
date_published: 2017-11-01T00:00:00Z
date_updated: 2025-09-18T09:58:08Z
day: '01'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1063/1.5002771
external_id:
  isi:
  - '000416827300016'
file:
- access_level: open_access
  checksum: 0731f9d416760c1062db258ca51f8bdc
  content_type: application/pdf
  creator: dernst
  date_created: 2019-10-24T15:14:30Z
  date_updated: 2020-07-14T12:46:32Z
  file_id: '6970'
  file_name: 2017_Chaos_Altmeyer.pdf
  file_size: 7714020
  relation: main_file
file_date_updated: 2020-07-14T12:46:32Z
has_accepted_license: '1'
intvolume: '        27'
isi: 1
issue: '11'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: Chaos
publication_identifier:
  issn:
  - 1054-1500
publication_status: published
publisher: AIP Publishing
publist_id: '7358'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transient behavior between multi-cell flow states in ferrofluidic Taylor-Couette
  flow
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 27
year: '2017'
...
---
_id: '470'
abstract:
- lang: eng
  text: This paper presents a method for simulating water surface waves as a displacement
    field on a 2D domain. Our method relies on Lagrangian particles that carry packets
    of water wave energy; each packet carries information about an entire group of
    wave trains, as opposed to only a single wave crest. Our approach is unconditionally
    stable and can simulate high resolution geometric details. This approach also
    presents a straightforward interface for artistic control, because it is essentially
    a particle system with intuitive parameters like wavelength and amplitude. Our
    implementation parallelizes well and runs in real time for moderately challenging
    scenarios.
acknowledged_ssus:
- _id: ScienComp
article_number: '103'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Stefan
  full_name: Jeschke, Stefan
  id: 44D6411A-F248-11E8-B48F-1D18A9856A87
  last_name: Jeschke
  orcid: 0000-0003-4330-8884
- first_name: Christopher J
  full_name: Wojtan, Christopher J
  id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
  last_name: Wojtan
  orcid: 0000-0001-6646-5546
citation:
  ama: Jeschke S, Wojtan C. Water wave packets. <i>ACM Transactions on Graphics</i>.
    2017;36(4). doi:<a href="https://doi.org/10.1145/3072959.3073678">10.1145/3072959.3073678</a>
  apa: Jeschke, S., &#38; Wojtan, C. (2017). Water wave packets. <i>ACM Transactions
    on Graphics</i>. ACM. <a href="https://doi.org/10.1145/3072959.3073678">https://doi.org/10.1145/3072959.3073678</a>
  chicago: Jeschke, Stefan, and Chris Wojtan. “Water Wave Packets.” <i>ACM Transactions
    on Graphics</i>. ACM, 2017. <a href="https://doi.org/10.1145/3072959.3073678">https://doi.org/10.1145/3072959.3073678</a>.
  ieee: S. Jeschke and C. Wojtan, “Water wave packets,” <i>ACM Transactions on Graphics</i>,
    vol. 36, no. 4. ACM, 2017.
  ista: Jeschke S, Wojtan C. 2017. Water wave packets. ACM Transactions on Graphics.
    36(4), 103.
  mla: Jeschke, Stefan, and Chris Wojtan. “Water Wave Packets.” <i>ACM Transactions
    on Graphics</i>, vol. 36, no. 4, 103, ACM, 2017, doi:<a href="https://doi.org/10.1145/3072959.3073678">10.1145/3072959.3073678</a>.
  short: S. Jeschke, C. Wojtan, ACM Transactions on Graphics 36 (2017).
date_created: 2018-12-11T11:46:39Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2026-04-16T09:58:39Z
day: '01'
ddc:
- '006'
department:
- _id: ChWo
doi: 10.1145/3072959.3073678
ec_funded: 1
external_id:
  isi:
  - '000406432100071'
file:
- access_level: open_access
  checksum: 82a3b2bfeee4ddef16ecc21675d1a48a
  content_type: application/pdf
  creator: wojtan
  date_created: 2020-01-24T09:32:35Z
  date_updated: 2020-07-14T12:46:34Z
  file_id: '7359'
  file_name: wavepackets_final.pdf
  file_size: 13131683
  relation: main_file
file_date_updated: 2020-07-14T12:46:34Z
has_accepted_license: '1'
intvolume: '        36'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '638176'
  name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
    Scales'
publication: ACM Transactions on Graphics
publication_identifier:
  issn:
  - 0730-0301
publication_status: published
publisher: ACM
publist_id: '7350'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Water wave packets
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 36
year: '2017'
...
---
_id: '471'
abstract:
- lang: eng
  text: 'We present a new algorithm for the statistical model checking of Markov chains
    with respect to unbounded temporal properties, including full linear temporal
    logic. The main idea is that we monitor each simulation run on the fly, in order
    to detect quickly if a bottom strongly connected component is entered with high
    probability, in which case the simulation run can be terminated early. As a result,
    our simulation runs are often much shorter than required by termination bounds
    that are computed a priori for a desired level of confidence on a large state
    space. In comparison to previous algorithms for statistical model checking our
    method is not only faster in many cases but also requires less information about
    the system, namely, only the minimum transition probability that occurs in the
    Markov chain. In addition, our method can be generalised to unbounded quantitative
    properties such as mean-payoff bounds. '
article_number: '12'
article_processing_charge: No
arxiv: 1
author:
- first_name: Przemyslaw
  full_name: Daca, Przemyslaw
  id: 49351290-F248-11E8-B48F-1D18A9856A87
  last_name: Daca
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Kretinsky, Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
  orcid: 0000-0002-8122-2881
- first_name: Tatjana
  full_name: Petrov, Tatjana
  id: 3D5811FC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrov
  orcid: 0000-0002-9041-0905
citation:
  ama: Daca P, Henzinger TA, Kretinsky J, Petrov T. Faster statistical model checking
    for unbounded temporal properties. <i>ACM Transactions on Computational Logic</i>.
    2017;18(2). doi:<a href="https://doi.org/10.1145/3060139">10.1145/3060139</a>
  apa: Daca, P., Henzinger, T. A., Kretinsky, J., &#38; Petrov, T. (2017). Faster
    statistical model checking for unbounded temporal properties. <i>ACM Transactions
    on Computational Logic</i>. ACM. <a href="https://doi.org/10.1145/3060139">https://doi.org/10.1145/3060139</a>
  chicago: Daca, Przemyslaw, Thomas A Henzinger, Jan Kretinsky, and Tatjana Petrov.
    “Faster Statistical Model Checking for Unbounded Temporal Properties.” <i>ACM
    Transactions on Computational Logic</i>. ACM, 2017. <a href="https://doi.org/10.1145/3060139">https://doi.org/10.1145/3060139</a>.
  ieee: P. Daca, T. A. Henzinger, J. Kretinsky, and T. Petrov, “Faster statistical
    model checking for unbounded temporal properties,” <i>ACM Transactions on Computational
    Logic</i>, vol. 18, no. 2. ACM, 2017.
  ista: Daca P, Henzinger TA, Kretinsky J, Petrov T. 2017. Faster statistical model
    checking for unbounded temporal properties. ACM Transactions on Computational
    Logic. 18(2), 12.
  mla: Daca, Przemyslaw, et al. “Faster Statistical Model Checking for Unbounded Temporal
    Properties.” <i>ACM Transactions on Computational Logic</i>, vol. 18, no. 2, 12,
    ACM, 2017, doi:<a href="https://doi.org/10.1145/3060139">10.1145/3060139</a>.
  short: P. Daca, T.A. Henzinger, J. Kretinsky, T. Petrov, ACM Transactions on Computational
    Logic 18 (2017).
corr_author: '1'
date_created: 2018-12-11T11:46:39Z
date_published: 2017-05-01T00:00:00Z
date_updated: 2025-09-22T09:21:16Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/3060139
ec_funded: 1
external_id:
  arxiv:
  - '1504.05739'
  isi:
  - '000405208400005'
intvolume: '        18'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1504.05739
month: '05'
oa: 1
oa_version: Submitted Version
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Moderne Concurrency Paradigms
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: ACM Transactions on Computational Logic
publication_identifier:
  issn:
  - 1529-3785
publication_status: published
publisher: ACM
publist_id: '7349'
quality_controlled: '1'
related_material:
  record:
  - id: '1234'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Faster statistical model checking for unbounded temporal properties
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 18
year: '2017'
...
---
_id: '481'
abstract:
- lang: eng
  text: We introduce planar matchings on directed pseudo-line arrangements, which
    yield a planar set of pseudo-line segments such that only matching-partners are
    adjacent. By translating the planar matching problem into a corresponding stable
    roommates problem we show that such matchings always exist. Using our new framework,
    we establish, for the first time, a complete, rigorous definition of weighted
    straight skeletons, which are based on a so-called wavefront propagation process.
    We present a generalized and unified approach to treat structural changes in the
    wavefront that focuses on the restoration of weak planarity by finding planar
    matchings.
acknowledgement: 'Supported by NSERC and the Ross and Muriel Cheriton Fellowship.
  Research supported by Austrian Science Fund (FWF): P25816-N15.'
author:
- first_name: Therese
  full_name: Biedl, Therese
  last_name: Biedl
- first_name: Stefan
  full_name: Huber, Stefan
  id: 4700A070-F248-11E8-B48F-1D18A9856A87
  last_name: Huber
  orcid: 0000-0002-8871-5814
- first_name: Peter
  full_name: Palfrader, Peter
  last_name: Palfrader
citation:
  ama: Biedl T, Huber S, Palfrader P. Planar matchings for weighted straight skeletons.
    <i>International Journal of Computational Geometry and Applications</i>. 2017;26(3-4):211-229.
    doi:<a href="https://doi.org/10.1142/S0218195916600050">10.1142/S0218195916600050</a>
  apa: Biedl, T., Huber, S., &#38; Palfrader, P. (2017). Planar matchings for weighted
    straight skeletons. <i>International Journal of Computational Geometry and Applications</i>.
    World Scientific Publishing. <a href="https://doi.org/10.1142/S0218195916600050">https://doi.org/10.1142/S0218195916600050</a>
  chicago: Biedl, Therese, Stefan Huber, and Peter Palfrader. “Planar Matchings for
    Weighted Straight Skeletons.” <i>International Journal of Computational Geometry
    and Applications</i>. World Scientific Publishing, 2017. <a href="https://doi.org/10.1142/S0218195916600050">https://doi.org/10.1142/S0218195916600050</a>.
  ieee: T. Biedl, S. Huber, and P. Palfrader, “Planar matchings for weighted straight
    skeletons,” <i>International Journal of Computational Geometry and Applications</i>,
    vol. 26, no. 3–4. World Scientific Publishing, pp. 211–229, 2017.
  ista: Biedl T, Huber S, Palfrader P. 2017. Planar matchings for weighted straight
    skeletons. International Journal of Computational Geometry and Applications. 26(3–4),
    211–229.
  mla: Biedl, Therese, et al. “Planar Matchings for Weighted Straight Skeletons.”
    <i>International Journal of Computational Geometry and Applications</i>, vol.
    26, no. 3–4, World Scientific Publishing, 2017, pp. 211–29, doi:<a href="https://doi.org/10.1142/S0218195916600050">10.1142/S0218195916600050</a>.
  short: T. Biedl, S. Huber, P. Palfrader, International Journal of Computational
    Geometry and Applications 26 (2017) 211–229.
corr_author: '1'
date_created: 2018-12-11T11:46:43Z
date_published: 2017-04-13T00:00:00Z
date_updated: 2025-09-29T13:22:54Z
day: '13'
ddc:
- '004'
- '514'
- '516'
department:
- _id: HeEd
doi: 10.1142/S0218195916600050
file:
- access_level: open_access
  checksum: f79e8558bfe4b368dfefeb8eec2e3a5e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:34Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4758'
  file_name: IST-2018-949-v1+1_2016_huber_PLanar_matchings.pdf
  file_size: 769296
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '        26'
issue: 3-4
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 211 - 229
publication: International Journal of Computational Geometry and Applications
publication_status: published
publisher: World Scientific Publishing
publist_id: '7338'
pubrep_id: '949'
quality_controlled: '1'
related_material:
  record:
  - id: '10892'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: Planar matchings for weighted straight skeletons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2017'
...
---
_id: '485'
abstract:
- lang: eng
  text: We present results on nonlinear electro-optical conversion of microwave radiation
    into the optical telecommunication band with more than 0.1% photon number conversion
    efficiency with MHz bandwidth, in a crystalline whispering gallery mode resonator
article_number: NM3A.1
article_processing_charge: No
author:
- first_name: Alfredo R
  full_name: Rueda Sanchez, Alfredo R
  id: 3B82B0F8-F248-11E8-B48F-1D18A9856A87
  last_name: Rueda Sanchez
  orcid: 0000-0001-6249-5860
- first_name: Florian
  full_name: Sedlmeir, Florian
  last_name: Sedlmeir
- first_name: Michele
  full_name: Collodo, Michele
  last_name: Collodo
- first_name: Ulrich
  full_name: Vogl, Ulrich
  last_name: Vogl
- first_name: Birgit
  full_name: Stiller, Birgit
  last_name: Stiller
- first_name: Gerhard
  full_name: Schunk, Gerhard
  last_name: Schunk
- first_name: Dmitry
  full_name: Strekalov, Dmitry
  last_name: Strekalov
- first_name: Christoph
  full_name: Marquardt, Christoph
  last_name: Marquardt
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Oskar
  full_name: Painter, Oskar
  last_name: Painter
- first_name: Gerd
  full_name: Leuchs, Gerd
  last_name: Leuchs
- first_name: Harald
  full_name: Schwefel, Harald
  last_name: Schwefel
citation:
  ama: 'Rueda Sanchez AR, Sedlmeir F, Collodo M, et al. Single sideband microwave
    to optical photon conversion-an-electro-optic-realization. In: <i>Optics InfoBase
    Conference Papers</i>. Vol F54. Optica Publishing Group; 2017. doi:<a href="https://doi.org/10.1364/NLO.2017.NM3A.1">10.1364/NLO.2017.NM3A.1</a>'
  apa: 'Rueda Sanchez, A. R., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk,
    G., … Schwefel, H. (2017). Single sideband microwave to optical photon conversion-an-electro-optic-realization.
    In <i>Optics InfoBase Conference Papers</i> (Vol. F54). Waikoloa, HI, United States:
    Optica Publishing Group. <a href="https://doi.org/10.1364/NLO.2017.NM3A.1">https://doi.org/10.1364/NLO.2017.NM3A.1</a>'
  chicago: Rueda Sanchez, Alfredo R, Florian Sedlmeir, Michele Collodo, Ulrich Vogl,
    Birgit Stiller, Gerhard Schunk, Dmitry Strekalov, et al. “Single Sideband Microwave
    to Optical Photon Conversion-an-Electro-Optic-Realization.” In <i>Optics InfoBase
    Conference Papers</i>, Vol. F54. Optica Publishing Group, 2017. <a href="https://doi.org/10.1364/NLO.2017.NM3A.1">https://doi.org/10.1364/NLO.2017.NM3A.1</a>.
  ieee: A. R. Rueda Sanchez <i>et al.</i>, “Single sideband microwave to optical photon
    conversion-an-electro-optic-realization,” in <i>Optics InfoBase Conference Papers</i>,
    Waikoloa, HI, United States, 2017, vol. F54.
  ista: 'Rueda Sanchez AR, Sedlmeir F, Collodo M, Vogl U, Stiller B, Schunk G, Strekalov
    D, Marquardt C, Fink JM, Painter O, Leuchs G, Schwefel H. 2017. Single sideband
    microwave to optical photon conversion-an-electro-optic-realization. Optics InfoBase
    Conference Papers. NLO: Nonlinear Optics vol. F54, NM3A.1.'
  mla: Rueda Sanchez, Alfredo R., et al. “Single Sideband Microwave to Optical Photon
    Conversion-an-Electro-Optic-Realization.” <i>Optics InfoBase Conference Papers</i>,
    vol. F54, NM3A.1, Optica Publishing Group, 2017, doi:<a href="https://doi.org/10.1364/NLO.2017.NM3A.1">10.1364/NLO.2017.NM3A.1</a>.
  short: A.R. Rueda Sanchez, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk,
    D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:,
    Optics InfoBase Conference Papers, Optica Publishing Group, 2017.
conference:
  end_date: 2017-07-21
  location: Waikoloa, HI, United States
  name: 'NLO: Nonlinear Optics'
  start_date: 2017-07-17
date_created: 2018-12-11T11:46:44Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2025-06-03T11:23:42Z
day: '01'
department:
- _id: JoFi
doi: 10.1364/NLO.2017.NM3A.1
language:
- iso: eng
month: '07'
oa_version: None
publication: Optics InfoBase Conference Papers
publication_identifier:
  isbn:
  - 978-155752820-9
publication_status: published
publisher: Optica Publishing Group
publist_id: '7335'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single sideband microwave to optical photon conversion-an-electro-optic-realization
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: F54
year: '2017'
...
---
_id: '486'
abstract:
- lang: eng
  text: Color texture reproduction in 3D printing commonly ignores volumetric light
    transport (cross-talk) between surface points on a 3D print. Such light diffusion
    leads to significant blur of details and color bleeding, and is particularly severe
    for highly translucent resin-based print materials. Given their widely varying
    scattering properties, this cross-talk between surface points strongly depends
    on the internal structure of the volume surrounding each surface point. Existing
    scattering-aware methods use simplified models for light diffusion, and often
    accept the visual blur as an immutable property of the print medium. In contrast,
    our work counteracts heterogeneous scattering to obtain the impression of a crisp
    albedo texture on top of the 3D print, by optimizing for a fully volumetric material
    distribution that preserves the target appearance. Our method employs an efficient
    numerical optimizer on top of a general Monte-Carlo simulation of heterogeneous
    scattering, supported by a practical calibration procedure to obtain scattering
    parameters from a given set of printer materials. Despite the inherent translucency
    of the medium, we reproduce detailed surface textures on 3D prints. We evaluate
    our system using a commercial, five-tone 3D print process and compare against
    the printer’s native color texturing mode, demonstrating that our method preserves
    high-frequency features well without having to compromise on color gamut.
article_number: '241'
article_processing_charge: No
article_type: original
author:
- first_name: Oskar
  full_name: Elek, Oskar
  last_name: Elek
- first_name: Denis
  full_name: Sumin, Denis
  last_name: Sumin
- first_name: Ran
  full_name: Zhang, Ran
  id: 4DDBCEB0-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0002-3808-281X
- first_name: Tim
  full_name: Weyrich, Tim
  last_name: Weyrich
- first_name: Karol
  full_name: Myszkowski, Karol
  last_name: Myszkowski
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Alexander
  full_name: Wilkie, Alexander
  last_name: Wilkie
- first_name: Jaroslav
  full_name: Krivanek, Jaroslav
  last_name: Krivanek
citation:
  ama: Elek O, Sumin D, Zhang R, et al. Scattering-aware texture reproduction for
    3D printing. <i>ACM Transactions on Graphics</i>. 2017;36(6). doi:<a href="https://doi.org/10.1145/3130800.3130890">10.1145/3130800.3130890</a>
  apa: Elek, O., Sumin, D., Zhang, R., Weyrich, T., Myszkowski, K., Bickel, B., …
    Krivanek, J. (2017). Scattering-aware texture reproduction for 3D printing. <i>ACM
    Transactions on Graphics</i>. ACM. <a href="https://doi.org/10.1145/3130800.3130890">https://doi.org/10.1145/3130800.3130890</a>
  chicago: Elek, Oskar, Denis Sumin, Ran Zhang, Tim Weyrich, Karol Myszkowski, Bernd
    Bickel, Alexander Wilkie, and Jaroslav Krivanek. “Scattering-Aware Texture Reproduction
    for 3D Printing.” <i>ACM Transactions on Graphics</i>. ACM, 2017. <a href="https://doi.org/10.1145/3130800.3130890">https://doi.org/10.1145/3130800.3130890</a>.
  ieee: O. Elek <i>et al.</i>, “Scattering-aware texture reproduction for 3D printing,”
    <i>ACM Transactions on Graphics</i>, vol. 36, no. 6. ACM, 2017.
  ista: Elek O, Sumin D, Zhang R, Weyrich T, Myszkowski K, Bickel B, Wilkie A, Krivanek
    J. 2017. Scattering-aware texture reproduction for 3D printing. ACM Transactions
    on Graphics. 36(6), 241.
  mla: Elek, Oskar, et al. “Scattering-Aware Texture Reproduction for 3D Printing.”
    <i>ACM Transactions on Graphics</i>, vol. 36, no. 6, 241, ACM, 2017, doi:<a href="https://doi.org/10.1145/3130800.3130890">10.1145/3130800.3130890</a>.
  short: O. Elek, D. Sumin, R. Zhang, T. Weyrich, K. Myszkowski, B. Bickel, A. Wilkie,
    J. Krivanek, ACM Transactions on Graphics 36 (2017).
date_created: 2018-12-11T11:46:44Z
date_published: 2017-11-20T00:00:00Z
date_updated: 2026-04-16T10:06:19Z
day: '20'
ddc:
- '003'
- '000'
- '005'
department:
- _id: BeBi
doi: 10.1145/3130800.3130890
ec_funded: 1
external_id:
  isi:
  - '000417448700071'
file:
- access_level: open_access
  checksum: 48386fa6956c3645fc89594dc898b147
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:46Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4836'
  file_name: IST-2018-1052-v1+1_ElekSumin2017SGA.pdf
  file_size: 107349827
  relation: main_file
- access_level: open_access
  checksum: 21c89c28fb8d70f6602f752bf997aa0f
  content_type: application/pdf
  creator: bbickel
  date_created: 2019-12-16T14:48:57Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '7189'
  file_name: ElekSumin2017SGA_reduced_file_size.pdf
  file_size: 4683145
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '        36'
isi: 1
issue: '6'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
project:
- _id: 2508E324-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '642841'
  name: Distributed 3D Object Design
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: ACM Transactions on Graphics
publication_identifier:
  issn:
  - 0730-0301
publication_status: published
publisher: ACM
publist_id: '7334'
pubrep_id: '1052'
quality_controlled: '1'
related_material:
  record:
  - id: '8386'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Scattering-aware texture reproduction for 3D printing
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 36
year: '2017'
...
---
_id: '487'
abstract:
- lang: eng
  text: In this paper we study network architecture for unlicensed cellular networking
    for outdoor coverage in TV white spaces. The main technology proposed for TV white
    spaces is 802.11af, a Wi-Fi variant adapted for TV frequencies. However, 802.11af
    is originally designed for improved indoor propagation. We show that long links,
    typical for outdoor use, exacerbate known Wi-Fi issues, such as hidden and exposed
    terminal, and significantly reduce its efficiency. Instead, we propose CellFi,
    an alternative architecture based on LTE. LTE is designed for long-range coverage
    and throughput efficiency, but it is also designed to operate in tightly controlled
    and centrally managed networks. CellFi overcomes these problems by designing an
    LTE-compatible spectrum database component, mandatory for TV white space networking,
    and introducing an interference management component for distributed coordination.
    CellFi interference management is compatible with existing LTE mechanisms, requires
    no explicit communication between base stations, and is more efficient than CSMA
    for long links. We evaluate our design through extensive real world evaluation
    on of-the-shelf LTE equipment and simulations. We show that, compared to 802.11af,
    it increases coverage by 40% and reduces median flow completion times by 2.3x.
article_processing_charge: No
author:
- first_name: Ghufran
  full_name: Baig, Ghufran
  last_name: Baig
- first_name: Bozidar
  full_name: Radunovic, Bozidar
  last_name: Radunovic
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Matthew
  full_name: Balkwill, Matthew
  last_name: Balkwill
- first_name: Thomas
  full_name: Karagiannis, Thomas
  last_name: Karagiannis
- first_name: Lili
  full_name: Qiu, Lili
  last_name: Qiu
citation:
  ama: 'Baig G, Radunovic B, Alistarh D-A, Balkwill M, Karagiannis T, Qiu L. Towards
    unlicensed cellular networks in TV white spaces. In: <i>Proceedings of the 2017
    13th International Conference on Emerging Networking EXperiments and Technologies</i>.
    ACM; 2017:2-14. doi:<a href="https://doi.org/10.1145/3143361.3143367">10.1145/3143361.3143367</a>'
  apa: 'Baig, G., Radunovic, B., Alistarh, D.-A., Balkwill, M., Karagiannis, T., &#38;
    Qiu, L. (2017). Towards unlicensed cellular networks in TV white spaces. In <i>Proceedings
    of the 2017 13th International Conference on emerging Networking EXperiments and
    Technologies</i> (pp. 2–14). Incheon, South Korea: ACM. <a href="https://doi.org/10.1145/3143361.3143367">https://doi.org/10.1145/3143361.3143367</a>'
  chicago: Baig, Ghufran, Bozidar Radunovic, Dan-Adrian Alistarh, Matthew Balkwill,
    Thomas Karagiannis, and Lili Qiu. “Towards Unlicensed Cellular Networks in TV
    White Spaces.” In <i>Proceedings of the 2017 13th International Conference on
    Emerging Networking EXperiments and Technologies</i>, 2–14. ACM, 2017. <a href="https://doi.org/10.1145/3143361.3143367">https://doi.org/10.1145/3143361.3143367</a>.
  ieee: G. Baig, B. Radunovic, D.-A. Alistarh, M. Balkwill, T. Karagiannis, and L.
    Qiu, “Towards unlicensed cellular networks in TV white spaces,” in <i>Proceedings
    of the 2017 13th International Conference on emerging Networking EXperiments and
    Technologies</i>, Incheon, South Korea, 2017, pp. 2–14.
  ista: 'Baig G, Radunovic B, Alistarh D-A, Balkwill M, Karagiannis T, Qiu L. 2017.
    Towards unlicensed cellular networks in TV white spaces. Proceedings of the 2017
    13th International Conference on emerging Networking EXperiments and Technologies.
    CoNEXT: Conference on emerging Networking EXperiments and Technologies, 2–14.'
  mla: Baig, Ghufran, et al. “Towards Unlicensed Cellular Networks in TV White Spaces.”
    <i>Proceedings of the 2017 13th International Conference on Emerging Networking
    EXperiments and Technologies</i>, ACM, 2017, pp. 2–14, doi:<a href="https://doi.org/10.1145/3143361.3143367">10.1145/3143361.3143367</a>.
  short: G. Baig, B. Radunovic, D.-A. Alistarh, M. Balkwill, T. Karagiannis, L. Qiu,
    in:, Proceedings of the 2017 13th International Conference on Emerging Networking
    EXperiments and Technologies, ACM, 2017, pp. 2–14.
conference:
  end_date: 2017-12-15
  location: Incheon, South Korea
  name: 'CoNEXT: Conference on emerging Networking EXperiments and Technologies'
  start_date: 2017-12-12
corr_author: '1'
date_created: 2018-12-11T11:46:45Z
date_published: 2017-11-28T00:00:00Z
date_updated: 2025-09-18T09:50:43Z
day: '28'
department:
- _id: DaAl
doi: 10.1145/3143361.3143367
external_id:
  isi:
  - '000526087500002'
isi: 1
language:
- iso: eng
month: '11'
oa_version: None
page: 2 - 14
publication: Proceedings of the 2017 13th International Conference on emerging Networking
  EXperiments and Technologies
publication_identifier:
  isbn:
  - 978-145035422-6
publication_status: published
publisher: ACM
publist_id: '7333'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Towards unlicensed cellular networks in TV white spaces
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2017'
...
---
_id: '512'
abstract:
- lang: eng
  text: 'The fixation probability is the probability that a new mutant introduced
    in a homogeneous population eventually takes over the entire population. The fixation
    probability is a fundamental quantity of natural selection, and known to depend
    on the population structure. Amplifiers of natural selection are population structures
    which increase the fixation probability of advantageous mutants, as compared to
    the baseline case of well-mixed populations. In this work we focus on symmetric
    population structures represented as undirected graphs. In the regime of undirected
    graphs, the strongest amplifier known has been the Star graph, and the existence
    of undirected graphs with stronger amplification properties has remained open
    for over a decade. In this work we present the Comet and Comet-swarm families
    of undirected graphs. We show that for a range of fitness values of the mutants,
    the Comet and Cometswarm graphs have fixation probability strictly larger than
    the fixation probability of the Star graph, for fixed population size and at the
    limit of large populations, respectively. '
article_number: '82'
article_processing_charge: No
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: 'Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. Amplification on undirected
    population structures: Comets beat stars. <i>Scientific Reports</i>. 2017;7(1).
    doi:<a href="https://doi.org/10.1038/s41598-017-00107-w">10.1038/s41598-017-00107-w</a>'
  apa: 'Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2017). Amplification
    on undirected population structures: Comets beat stars. <i>Scientific Reports</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/s41598-017-00107-w">https://doi.org/10.1038/s41598-017-00107-w</a>'
  chicago: 'Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. “Amplification on Undirected Population Structures: Comets Beat Stars.”
    <i>Scientific Reports</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/s41598-017-00107-w">https://doi.org/10.1038/s41598-017-00107-w</a>.'
  ieee: 'A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, “Amplification
    on undirected population structures: Comets beat stars,” <i>Scientific Reports</i>,
    vol. 7, no. 1. Nature Publishing Group, 2017.'
  ista: 'Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2017. Amplification on
    undirected population structures: Comets beat stars. Scientific Reports. 7(1),
    82.'
  mla: 'Pavlogiannis, Andreas, et al. “Amplification on Undirected Population Structures:
    Comets Beat Stars.” <i>Scientific Reports</i>, vol. 7, no. 1, 82, Nature Publishing
    Group, 2017, doi:<a href="https://doi.org/10.1038/s41598-017-00107-w">10.1038/s41598-017-00107-w</a>.'
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Scientific Reports
    7 (2017).
corr_author: '1'
date_created: 2018-12-11T11:46:53Z
date_published: 2017-03-06T00:00:00Z
date_updated: 2025-09-18T09:50:10Z
day: '06'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.1038/s41598-017-00107-w
ec_funded: 1
external_id:
  isi:
  - '000396867800013'
file:
- access_level: open_access
  checksum: 7d05cbdd914e194a019c0f91fb64e9a8
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:18:35Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '5357'
  file_name: IST-2018-938-v1+1_2017_Pavlogiannis_Amplification_on.pdf
  file_size: 1536783
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication: Scientific Reports
publication_identifier:
  issn:
  - 2045-2322
publication_status: published
publisher: Nature Publishing Group
publist_id: '7307'
pubrep_id: '938'
quality_controlled: '1'
related_material:
  record:
  - id: '5449'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: 'Amplification on undirected population structures: Comets beat stars'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2017'
...
---
_id: '513'
abstract:
- lang: eng
  text: 'We present an experimental setup that creates a shear flow with zero mean
    advection velocity achieved by counterbalancing the nonzero streamwise pressure
    gradient by moving boundaries, which generates plane Couette-Poiseuille flow.
    We obtain experimental results in the transitional regime for this flow. Using
    flow visualization, we characterize the subcritical transition to turbulence in
    Couette-Poiseuille flow and show the existence of turbulent spots generated by
    a permanent perturbation. Due to the zero mean advection velocity of the base
    profile, these turbulent structures are nearly stationary. We distinguish two
    regions of the turbulent spot: the active turbulent core, which is characterized
    by waviness of the streaks similar to traveling waves, and the surrounding region,
    which includes in addition the weak undisturbed streaks and oblique waves at the
    laminar-turbulent interface. We also study the dependence of the size of these
    two regions on Reynolds number. Finally, we show that the traveling waves move
    in the downstream (Poiseuille) direction.'
article_number: '043904'
article_processing_charge: No
arxiv: 1
author:
- first_name: Lukasz
  full_name: Klotz, Lukasz
  id: 2C9AF1C2-F248-11E8-B48F-1D18A9856A87
  last_name: Klotz
  orcid: 0000-0003-1740-7635
- first_name: Grégoire M
  full_name: Lemoult, Grégoire M
  id: 4787FE80-F248-11E8-B48F-1D18A9856A87
  last_name: Lemoult
- first_name: Idalia
  full_name: Frontczak, Idalia
  last_name: Frontczak
- first_name: Laurette
  full_name: Tuckerman, Laurette
  last_name: Tuckerman
- first_name: José
  full_name: Wesfreid, José
  last_name: Wesfreid
citation:
  ama: 'Klotz L, Lemoult GM, Frontczak I, Tuckerman L, Wesfreid J. Couette-Poiseuille
    flow experiment with zero mean advection velocity: Subcritical transition to turbulence.
    <i>Physical Review Fluids</i>. 2017;2(4). doi:<a href="https://doi.org/10.1103/PhysRevFluids.2.043904">10.1103/PhysRevFluids.2.043904</a>'
  apa: 'Klotz, L., Lemoult, G. M., Frontczak, I., Tuckerman, L., &#38; Wesfreid, J.
    (2017). Couette-Poiseuille flow experiment with zero mean advection velocity:
    Subcritical transition to turbulence. <i>Physical Review Fluids</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevFluids.2.043904">https://doi.org/10.1103/PhysRevFluids.2.043904</a>'
  chicago: 'Klotz, Lukasz, Grégoire M Lemoult, Idalia Frontczak, Laurette Tuckerman,
    and José Wesfreid. “Couette-Poiseuille Flow Experiment with Zero Mean Advection
    Velocity: Subcritical Transition to Turbulence.” <i>Physical Review Fluids</i>.
    American Physical Society, 2017. <a href="https://doi.org/10.1103/PhysRevFluids.2.043904">https://doi.org/10.1103/PhysRevFluids.2.043904</a>.'
  ieee: 'L. Klotz, G. M. Lemoult, I. Frontczak, L. Tuckerman, and J. Wesfreid, “Couette-Poiseuille
    flow experiment with zero mean advection velocity: Subcritical transition to turbulence,”
    <i>Physical Review Fluids</i>, vol. 2, no. 4. American Physical Society, 2017.'
  ista: 'Klotz L, Lemoult GM, Frontczak I, Tuckerman L, Wesfreid J. 2017. Couette-Poiseuille
    flow experiment with zero mean advection velocity: Subcritical transition to turbulence.
    Physical Review Fluids. 2(4), 043904.'
  mla: 'Klotz, Lukasz, et al. “Couette-Poiseuille Flow Experiment with Zero Mean Advection
    Velocity: Subcritical Transition to Turbulence.” <i>Physical Review Fluids</i>,
    vol. 2, no. 4, 043904, American Physical Society, 2017, doi:<a href="https://doi.org/10.1103/PhysRevFluids.2.043904">10.1103/PhysRevFluids.2.043904</a>.'
  short: L. Klotz, G.M. Lemoult, I. Frontczak, L. Tuckerman, J. Wesfreid, Physical
    Review Fluids 2 (2017).
date_created: 2018-12-11T11:46:54Z
date_published: 2017-04-01T00:00:00Z
date_updated: 2025-09-18T09:49:18Z
day: '01'
department:
- _id: BjHo
doi: 10.1103/PhysRevFluids.2.043904
external_id:
  arxiv:
  - '1704.02619'
  isi:
  - '000400249900003'
intvolume: '         2'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1704.02619
month: '04'
oa: 1
oa_version: Preprint
publication: Physical Review Fluids
publication_status: published
publisher: American Physical Society
publist_id: '7306'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Couette-Poiseuille flow experiment with zero mean advection velocity: Subcritical
  transition to turbulence'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2
year: '2017'
...
---
_id: '514'
abstract:
- lang: eng
  text: 'Orientation in space is represented in specialized brain circuits. Persistent
    head direction signals are transmitted from anterior thalamus to the presubiculum,
    but the identity of the presubicular target neurons, their connectivity and function
    in local microcircuits are unknown. Here, we examine how thalamic afferents recruit
    presubicular principal neurons and Martinotti interneurons, and the ensuing synaptic
    interactions between these cells. Pyramidal neuron activation of Martinotti cells
    in superficial layers is strongly facilitating such that high-frequency head directional
    stimulation efficiently unmutes synaptic excitation. Martinotti-cell feedback
    plays a dual role: precisely timed spikes may not inhibit the firing of in-tune
    head direction cells, while exerting lateral inhibition. Autonomous attractor
    dynamics emerge from a modelled network implementing wiring motifs and timing
    sensitive synaptic interactions in the pyramidal - Martinotti-cell feedback loop.
    This inhibitory microcircuit is therefore tuned to refine and maintain head direction
    information in the presubiculum.'
article_number: '16032'
article_processing_charge: No
author:
- first_name: Jean
  full_name: Simonnet, Jean
  last_name: Simonnet
- first_name: Mérie
  full_name: Nassar, Mérie
  last_name: Nassar
- first_name: Federico
  full_name: Stella, Federico
  id: 39AF1E74-F248-11E8-B48F-1D18A9856A87
  last_name: Stella
  orcid: 0000-0001-9439-3148
- first_name: Ivan
  full_name: Cohen, Ivan
  last_name: Cohen
- first_name: Bertrand
  full_name: Mathon, Bertrand
  last_name: Mathon
- first_name: Charlotte
  full_name: Boccara, Charlotte
  id: 3FC06552-F248-11E8-B48F-1D18A9856A87
  last_name: Boccara
  orcid: 0000-0001-7237-5109
- first_name: Richard
  full_name: Miles, Richard
  last_name: Miles
- first_name: Desdemona
  full_name: Fricker, Desdemona
  last_name: Fricker
citation:
  ama: Simonnet J, Nassar M, Stella F, et al. Activity dependent feedback inhibition
    may maintain head direction signals in mouse presubiculum. <i>Nature Communications</i>.
    2017;8. doi:<a href="https://doi.org/10.1038/ncomms16032">10.1038/ncomms16032</a>
  apa: Simonnet, J., Nassar, M., Stella, F., Cohen, I., Mathon, B., Boccara, C. N.,
    … Fricker, D. (2017). Activity dependent feedback inhibition may maintain head
    direction signals in mouse presubiculum. <i>Nature Communications</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/ncomms16032">https://doi.org/10.1038/ncomms16032</a>
  chicago: Simonnet, Jean, Mérie Nassar, Federico Stella, Ivan Cohen, Bertrand Mathon,
    Charlotte N. Boccara, Richard Miles, and Desdemona Fricker. “Activity Dependent
    Feedback Inhibition May Maintain Head Direction Signals in Mouse Presubiculum.”
    <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/ncomms16032">https://doi.org/10.1038/ncomms16032</a>.
  ieee: J. Simonnet <i>et al.</i>, “Activity dependent feedback inhibition may maintain
    head direction signals in mouse presubiculum,” <i>Nature Communications</i>, vol.
    8. Nature Publishing Group, 2017.
  ista: Simonnet J, Nassar M, Stella F, Cohen I, Mathon B, Boccara CN, Miles R, Fricker
    D. 2017. Activity dependent feedback inhibition may maintain head direction signals
    in mouse presubiculum. Nature Communications. 8, 16032.
  mla: Simonnet, Jean, et al. “Activity Dependent Feedback Inhibition May Maintain
    Head Direction Signals in Mouse Presubiculum.” <i>Nature Communications</i>, vol.
    8, 16032, Nature Publishing Group, 2017, doi:<a href="https://doi.org/10.1038/ncomms16032">10.1038/ncomms16032</a>.
  short: J. Simonnet, M. Nassar, F. Stella, I. Cohen, B. Mathon, C.N. Boccara, R.
    Miles, D. Fricker, Nature Communications 8 (2017).
date_created: 2018-12-11T11:46:54Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2025-09-18T09:48:43Z
day: '01'
ddc:
- '571'
department:
- _id: JoCs
doi: 10.1038/ncomms16032
external_id:
  isi:
  - '000405901100001'
file:
- access_level: open_access
  checksum: 76d8a2b72a58e56adb410ec37dfa7eee
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:31Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '5083'
  file_name: IST-2018-937-v1+1_2017_Stella_Activity_dependent.pdf
  file_size: 2948357
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Nature Publishing Group
publist_id: '7305'
pubrep_id: '937'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Activity dependent feedback inhibition may maintain head direction signals
  in mouse presubiculum
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2017'
...
---
_id: '515'
abstract:
- lang: eng
  text: 'The oxidative phosphorylation electron transport chain (OXPHOS-ETC) of the
    inner mitochondrial membrane is composed of five large protein complexes, named
    CI-CV. These complexes convert energy from the food we eat into ATP, a small molecule
    used to power a multitude of essential reactions throughout the cell. OXPHOS-ETC
    complexes are organized into supercomplexes (SCs) of defined stoichiometry: CI
    forms a supercomplex with CIII2 and CIV (SC I+III2+IV, known as the respirasome),
    as well as with CIII2 alone (SC I+III2). CIII2 forms a supercomplex with CIV (SC
    III2+IV) and CV forms dimers (CV2). Recent cryo-EM studies have revealed the structures
    of SC I+III2+IV and SC I+III2. Furthermore, recent work has shed light on the
    assembly and function of the SCs. Here we review and compare these recent studies
    and discuss how they have advanced our understanding of mitochondrial electron
    transport.'
article_processing_charge: No
article_type: original
author:
- first_name: James A
  full_name: Letts, James A
  id: 322DA418-F248-11E8-B48F-1D18A9856A87
  last_name: Letts
  orcid: 0000-0002-9864-3586
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: 'Letts JA, Sazanov LA. Clarifying the supercomplex: The higher-order organization
    of the mitochondrial electron transport chain. <i>Nature Structural and Molecular
    Biology</i>. 2017;24(10):800-808. doi:<a href="https://doi.org/10.1038/nsmb.3460">10.1038/nsmb.3460</a>'
  apa: 'Letts, J. A., &#38; Sazanov, L. A. (2017). Clarifying the supercomplex: The
    higher-order organization of the mitochondrial electron transport chain. <i>Nature
    Structural and Molecular Biology</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nsmb.3460">https://doi.org/10.1038/nsmb.3460</a>'
  chicago: 'Letts, James A, and Leonid A Sazanov. “Clarifying the Supercomplex: The
    Higher-Order Organization of the Mitochondrial Electron Transport Chain.” <i>Nature
    Structural and Molecular Biology</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/nsmb.3460">https://doi.org/10.1038/nsmb.3460</a>.'
  ieee: 'J. A. Letts and L. A. Sazanov, “Clarifying the supercomplex: The higher-order
    organization of the mitochondrial electron transport chain,” <i>Nature Structural
    and Molecular Biology</i>, vol. 24, no. 10. Nature Publishing Group, pp. 800–808,
    2017.'
  ista: 'Letts JA, Sazanov LA. 2017. Clarifying the supercomplex: The higher-order
    organization of the mitochondrial electron transport chain. Nature Structural
    and Molecular Biology. 24(10), 800–808.'
  mla: 'Letts, James A., and Leonid A. Sazanov. “Clarifying the Supercomplex: The
    Higher-Order Organization of the Mitochondrial Electron Transport Chain.” <i>Nature
    Structural and Molecular Biology</i>, vol. 24, no. 10, Nature Publishing Group,
    2017, pp. 800–08, doi:<a href="https://doi.org/10.1038/nsmb.3460">10.1038/nsmb.3460</a>.'
  short: J.A. Letts, L.A. Sazanov, Nature Structural and Molecular Biology 24 (2017)
    800–808.
corr_author: '1'
date_created: 2018-12-11T11:46:54Z
date_published: 2017-10-05T00:00:00Z
date_updated: 2025-09-18T09:47:41Z
day: '05'
ddc:
- '572'
department:
- _id: LeSa
doi: 10.1038/nsmb.3460
ec_funded: 1
external_id:
  isi:
  - '000412278000006'
file:
- access_level: open_access
  checksum: 9bc7e8c41b43636dd7566289e511f096
  content_type: application/pdf
  creator: lsazanov
  date_created: 2019-11-07T12:51:07Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '6993'
  file_name: 29893_2_merged_1501257589_red.pdf
  file_size: 4118385
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 800 - 808
project:
- _id: 2590DB08-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '701309'
  name: Atomic Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes
publication: Nature Structural and Molecular Biology
publication_identifier:
  issn:
  - 1545-9993
publication_status: published
publisher: Nature Publishing Group
publist_id: '7304'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Clarifying the supercomplex: The higher-order organization of the mitochondrial
  electron transport chain'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 24
year: '2017'
...
---
_id: '520'
abstract:
- lang: eng
  text: Cyanobacteria are mostly engineered to be sustainable cell-factories by genetic
    manipulations alone. Here, by modulating the concentration of allosteric effectors,
    we focus on increasing product formation without further burdening the cells with
    increased expression of enzymes. Resorting to a novel 96-well microplate cultivation
    system for cyanobacteria, and using lactate-producing strains of Synechocystis
    PCC6803 expressing different l-lactate dehydrogenases (LDH), we titrated the effect
    of 2,5-anhydro-mannitol supplementation. The latter acts in cells as a nonmetabolizable
    analogue of fructose 1,6-bisphosphate, a known allosteric regulator of one of
    the tested LDHs. In this strain (SAA023), we achieved over 2-fold increase of
    lactate productivity. Furthermore, we observed that as carbon is increasingly
    deviated during growth toward product formation, there is an increased fixation
    rate in the population of spontaneous mutants harboring an impaired production
    pathway. This is a challenge in the development of green cell factories, which
    may be countered by the incorporation in biotechnological processes of strategies
    such as the one pioneered here.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Wei
  full_name: Du, Wei
  last_name: Du
- first_name: Andreas
  full_name: Angermayr, Andreas
  id: 4677C796-F248-11E8-B48F-1D18A9856A87
  last_name: Angermayr
  orcid: 0000-0001-8619-2223
- first_name: Joeri
  full_name: Jongbloets, Joeri
  last_name: Jongbloets
- first_name: Douwe
  full_name: Molenaar, Douwe
  last_name: Molenaar
- first_name: Herwig
  full_name: Bachmann, Herwig
  last_name: Bachmann
- first_name: Klaas
  full_name: Hellingwerf, Klaas
  last_name: Hellingwerf
- first_name: Filipe
  full_name: Branco Dos Santos, Filipe
  last_name: Branco Dos Santos
citation:
  ama: Du W, Angermayr A, Jongbloets J, et al. Nonhierarchical flux regulation exposes
    the fitness burden associated with lactate production in Synechocystis sp. PCC6803.
    <i>ACS Synthetic Biology</i>. 2017;6(3):395-401. doi:<a href="https://doi.org/10.1021/acssynbio.6b00235">10.1021/acssynbio.6b00235</a>
  apa: Du, W., Angermayr, A., Jongbloets, J., Molenaar, D., Bachmann, H., Hellingwerf,
    K., &#38; Branco Dos Santos, F. (2017). Nonhierarchical flux regulation exposes
    the fitness burden associated with lactate production in Synechocystis sp. PCC6803.
    <i>ACS Synthetic Biology</i>. American Chemical Society. <a href="https://doi.org/10.1021/acssynbio.6b00235">https://doi.org/10.1021/acssynbio.6b00235</a>
  chicago: Du, Wei, Andreas Angermayr, Joeri Jongbloets, Douwe Molenaar, Herwig Bachmann,
    Klaas Hellingwerf, and Filipe Branco Dos Santos. “Nonhierarchical Flux Regulation
    Exposes the Fitness Burden Associated with Lactate Production in Synechocystis
    Sp. PCC6803.” <i>ACS Synthetic Biology</i>. American Chemical Society, 2017. <a
    href="https://doi.org/10.1021/acssynbio.6b00235">https://doi.org/10.1021/acssynbio.6b00235</a>.
  ieee: W. Du <i>et al.</i>, “Nonhierarchical flux regulation exposes the fitness
    burden associated with lactate production in Synechocystis sp. PCC6803,” <i>ACS
    Synthetic Biology</i>, vol. 6, no. 3. American Chemical Society, pp. 395–401,
    2017.
  ista: Du W, Angermayr A, Jongbloets J, Molenaar D, Bachmann H, Hellingwerf K, Branco
    Dos Santos F. 2017. Nonhierarchical flux regulation exposes the fitness burden
    associated with lactate production in Synechocystis sp. PCC6803. ACS Synthetic
    Biology. 6(3), 395–401.
  mla: Du, Wei, et al. “Nonhierarchical Flux Regulation Exposes the Fitness Burden
    Associated with Lactate Production in Synechocystis Sp. PCC6803.” <i>ACS Synthetic
    Biology</i>, vol. 6, no. 3, American Chemical Society, 2017, pp. 395–401, doi:<a
    href="https://doi.org/10.1021/acssynbio.6b00235">10.1021/acssynbio.6b00235</a>.
  short: W. Du, A. Angermayr, J. Jongbloets, D. Molenaar, H. Bachmann, K. Hellingwerf,
    F. Branco Dos Santos, ACS Synthetic Biology 6 (2017) 395–401.
date_created: 2018-12-11T11:46:56Z
date_published: 2017-03-17T00:00:00Z
date_updated: 2025-09-18T09:45:41Z
day: '17'
department:
- _id: ToBo
doi: 10.1021/acssynbio.6b00235
external_id:
  isi:
  - '000397080300002'
  pmid:
  - '27936615'
intvolume: '         6'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 395 - 401
pmid: 1
publication: ACS Synthetic Biology
publication_identifier:
  issn:
  - 2161-5063
publication_status: published
publisher: American Chemical Society
publist_id: '7298'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nonhierarchical flux regulation exposes the fitness burden associated with
  lactate production in Synechocystis sp. PCC6803
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 6
year: '2017'
...
---
_id: '521'
abstract:
- lang: eng
  text: Let X and Y be proper metric spaces. We show that a coarsely n-to-1 map f:X→Y
    induces an n-to-1 map of Higson coronas. This viewpoint turns out to be successful
    in showing that the classical dimension raising theorems hold in large scale;
    that is, if f:X→Y is a coarsely n-to-1 map between proper metric spaces X and
    Y then asdim(Y)≤asdim(X)+n−1. Furthermore we introduce coarsely open coarsely
    n-to-1 maps, which include the natural quotient maps via a finite group action,
    and prove that they preserve the asymptotic dimension.
article_processing_charge: No
arxiv: 1
author:
- first_name: Kyle
  full_name: Austin, Kyle
  last_name: Austin
- first_name: Ziga
  full_name: Virk, Ziga
  id: 2E36B656-F248-11E8-B48F-1D18A9856A87
  last_name: Virk
citation:
  ama: Austin K, Virk Z. Higson compactification and dimension raising. <i>Topology
    and its Applications</i>. 2017;215:45-57. doi:<a href="https://doi.org/10.1016/j.topol.2016.10.005">10.1016/j.topol.2016.10.005</a>
  apa: Austin, K., &#38; Virk, Z. (2017). Higson compactification and dimension raising.
    <i>Topology and Its Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.topol.2016.10.005">https://doi.org/10.1016/j.topol.2016.10.005</a>
  chicago: Austin, Kyle, and Ziga Virk. “Higson Compactification and Dimension Raising.”
    <i>Topology and Its Applications</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.topol.2016.10.005">https://doi.org/10.1016/j.topol.2016.10.005</a>.
  ieee: K. Austin and Z. Virk, “Higson compactification and dimension raising,” <i>Topology
    and its Applications</i>, vol. 215. Elsevier, pp. 45–57, 2017.
  ista: Austin K, Virk Z. 2017. Higson compactification and dimension raising. Topology
    and its Applications. 215, 45–57.
  mla: Austin, Kyle, and Ziga Virk. “Higson Compactification and Dimension Raising.”
    <i>Topology and Its Applications</i>, vol. 215, Elsevier, 2017, pp. 45–57, doi:<a
    href="https://doi.org/10.1016/j.topol.2016.10.005">10.1016/j.topol.2016.10.005</a>.
  short: K. Austin, Z. Virk, Topology and Its Applications 215 (2017) 45–57.
corr_author: '1'
date_created: 2018-12-11T11:46:56Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2025-09-18T09:47:04Z
day: '01'
department:
- _id: HeEd
doi: 10.1016/j.topol.2016.10.005
external_id:
  arxiv:
  - '1608.03954'
  isi:
  - '000390501400005'
intvolume: '       215'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1608.03954
month: '01'
oa: 1
oa_version: Submitted Version
page: 45 - 57
publication: Topology and its Applications
publication_identifier:
  issn:
  - 0166-8641
publication_status: published
publisher: Elsevier
publist_id: '7299'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Higson compactification and dimension raising
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 215
year: '2017'
...
---
_id: '534'
abstract:
- lang: eng
  text: We investigate the complexity of finding an embedded non-orientable surface
    of Euler genus g in a triangulated 3-manifold. This problem occurs both as a natural
    question in low-dimensional topology, and as a first non-trivial instance of embeddability
    of complexes into 3-manifolds. We prove that the problem is NP-hard, thus adding
    to the relatively few hardness results that are currently known in 3-manifold
    topology. In addition, we show that the problem lies in NP when the Euler genus
    g is odd, and we give an explicit algorithm in this case.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Benjamin
  full_name: Burton, Benjamin
  last_name: Burton
- first_name: Arnaud N
  full_name: De Mesmay, Arnaud N
  id: 3DB2F25C-F248-11E8-B48F-1D18A9856A87
  last_name: De Mesmay
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: Burton B, de Mesmay AN, Wagner U. Finding non-orientable surfaces in 3-Manifolds.
    <i>Discrete &#38; Computational Geometry</i>. 2017;58(4):871-888. doi:<a href="https://doi.org/10.1007/s00454-017-9900-0">10.1007/s00454-017-9900-0</a>
  apa: Burton, B., de Mesmay, A. N., &#38; Wagner, U. (2017). Finding non-orientable
    surfaces in 3-Manifolds. <i>Discrete &#38; Computational Geometry</i>. Springer.
    <a href="https://doi.org/10.1007/s00454-017-9900-0">https://doi.org/10.1007/s00454-017-9900-0</a>
  chicago: Burton, Benjamin, Arnaud N de Mesmay, and Uli Wagner. “Finding Non-Orientable
    Surfaces in 3-Manifolds.” <i>Discrete &#38; Computational Geometry</i>. Springer,
    2017. <a href="https://doi.org/10.1007/s00454-017-9900-0">https://doi.org/10.1007/s00454-017-9900-0</a>.
  ieee: B. Burton, A. N. de Mesmay, and U. Wagner, “Finding non-orientable surfaces
    in 3-Manifolds,” <i>Discrete &#38; Computational Geometry</i>, vol. 58, no. 4.
    Springer, pp. 871–888, 2017.
  ista: Burton B, de Mesmay AN, Wagner U. 2017. Finding non-orientable surfaces in
    3-Manifolds. Discrete &#38; Computational Geometry. 58(4), 871–888.
  mla: Burton, Benjamin, et al. “Finding Non-Orientable Surfaces in 3-Manifolds.”
    <i>Discrete &#38; Computational Geometry</i>, vol. 58, no. 4, Springer, 2017,
    pp. 871–88, doi:<a href="https://doi.org/10.1007/s00454-017-9900-0">10.1007/s00454-017-9900-0</a>.
  short: B. Burton, A.N. de Mesmay, U. Wagner, Discrete &#38; Computational Geometry
    58 (2017) 871–888.
corr_author: '1'
date_created: 2018-12-11T11:47:01Z
date_published: 2017-06-09T00:00:00Z
date_updated: 2025-09-18T09:45:02Z
day: '09'
department:
- _id: UlWa
doi: 10.1007/s00454-017-9900-0
external_id:
  arxiv:
  - '1602.07907'
  isi:
  - '000413958900006'
intvolume: '        58'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.07907
month: '06'
oa: 1
oa_version: Preprint
page: 871 - 888
publication: Discrete & Computational Geometry
publication_identifier:
  issn:
  - '01795376'
publication_status: published
publisher: Springer
publist_id: '7283'
quality_controlled: '1'
related_material:
  record:
  - id: '1379'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Finding non-orientable surfaces in 3-Manifolds
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 58
year: '2017'
...
---
_id: '538'
abstract:
- lang: ger
  text: 'Optogenetik und Photopharmakologie ermöglichen präzise räumliche und zeitliche
    Kontrolle von Proteinwechselwirkung und -funktion in Zellen und Tieren. Optogenetische
    Methoden, die auf grünes Licht ansprechen und zum Trennen von Proteinkomplexen
    geeignet sind, sind nichtweitläufig verfügbar, würden jedoch mehrfarbige Experimente
    zur Beantwortung von biologischen Fragestellungen ermöglichen. Hier demonstrieren
    wir die Verwendung von Cobalamin(Vitamin B12)-bindenden Domänen von bakteriellen
    CarH-Transkriptionsfaktoren zur Grünlicht-induzierten Dissoziation von Rezeptoren.
    Fusioniert mit dem Fibroblasten-W achstumsfaktor-Rezeptor 1 führten diese im Dunkeln
    in kultivierten Zellen zu Signalaktivität durch Oligomerisierung, welche durch
    Beleuchten umgehend aufgehoben wurde. In Zebrafischembryonen, die einen derartigen
    Rezeptor exprimieren, ermöglichte grünes Licht die Kontrolle über abnormale Signalaktivität
    während der Embryonalentwicklung. '
author:
- first_name: Stephanie
  full_name: Kainrath, Stephanie
  id: 32CFBA64-F248-11E8-B48F-1D18A9856A87
  last_name: Kainrath
- first_name: Manuela
  full_name: Stadler, Manuela
  last_name: Stadler
- first_name: Eva
  full_name: Gschaider-Reichhart, Eva
  id: 3FEE232A-F248-11E8-B48F-1D18A9856A87
  last_name: Gschaider-Reichhart
  orcid: 0000-0002-7218-7738
- first_name: Martin
  full_name: Distel, Martin
  last_name: Distel
- first_name: Harald L
  full_name: Janovjak, Harald L
  id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
  last_name: Janovjak
  orcid: 0000-0002-8023-9315
citation:
  ama: Kainrath S, Stadler M, Gschaider-Reichhart E, Distel M, Janovjak HL. Grünlicht-induzierte
    Rezeptorinaktivierung durch Cobalamin-bindende Domänen. <i>Angewandte Chemie</i>.
    2017;129(16):4679-4682. doi:<a href="https://doi.org/10.1002/ange.201611998">10.1002/ange.201611998</a>
  apa: Kainrath, S., Stadler, M., Gschaider-Reichhart, E., Distel, M., &#38; Janovjak,
    H. L. (2017). Grünlicht-induzierte Rezeptorinaktivierung durch Cobalamin-bindende
    Domänen. <i>Angewandte Chemie</i>. Wiley. <a href="https://doi.org/10.1002/ange.201611998">https://doi.org/10.1002/ange.201611998</a>
  chicago: Kainrath, Stephanie, Manuela Stadler, Eva Gschaider-Reichhart, Martin Distel,
    and Harald L Janovjak. “Grünlicht-Induzierte Rezeptorinaktivierung Durch Cobalamin-Bindende
    Domänen.” <i>Angewandte Chemie</i>. Wiley, 2017. <a href="https://doi.org/10.1002/ange.201611998">https://doi.org/10.1002/ange.201611998</a>.
  ieee: S. Kainrath, M. Stadler, E. Gschaider-Reichhart, M. Distel, and H. L. Janovjak,
    “Grünlicht-induzierte Rezeptorinaktivierung durch Cobalamin-bindende Domänen,”
    <i>Angewandte Chemie</i>, vol. 129, no. 16. Wiley, pp. 4679–4682, 2017.
  ista: Kainrath S, Stadler M, Gschaider-Reichhart E, Distel M, Janovjak HL. 2017.
    Grünlicht-induzierte Rezeptorinaktivierung durch Cobalamin-bindende Domänen. Angewandte
    Chemie. 129(16), 4679–4682.
  mla: Kainrath, Stephanie, et al. “Grünlicht-Induzierte Rezeptorinaktivierung Durch
    Cobalamin-Bindende Domänen.” <i>Angewandte Chemie</i>, vol. 129, no. 16, Wiley,
    2017, pp. 4679–82, doi:<a href="https://doi.org/10.1002/ange.201611998">10.1002/ange.201611998</a>.
  short: S. Kainrath, M. Stadler, E. Gschaider-Reichhart, M. Distel, H.L. Janovjak,
    Angewandte Chemie 129 (2017) 4679–4682.
corr_author: '1'
date_created: 2018-12-11T11:47:02Z
date_published: 2017-05-20T00:00:00Z
date_updated: 2024-10-09T20:58:07Z
day: '20'
ddc:
- '571'
department:
- _id: CaGu
- _id: HaJa
doi: 10.1002/ange.201611998
ec_funded: 1
file:
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  file_size: 1668557
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file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
intvolume: '       129'
issue: '16'
language:
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month: '05'
oa: 1
oa_version: Published Version
page: 4679 - 4682
project:
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  call_identifier: FP7
  grant_number: '303564'
  name: Microbial Ion Channels for Synthetic Neurobiology
- _id: 255A6082-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1232-B24
  name: Molecular Drug Targets
publication: Angewandte Chemie
publication_status: published
publisher: Wiley
publist_id: '7279'
pubrep_id: '932'
quality_controlled: '1'
status: public
title: Grünlicht-induzierte Rezeptorinaktivierung durch Cobalamin-bindende Domänen
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2017'
...
---
_id: '540'
abstract:
- lang: eng
  text: RNA-dependent RNA polymerases (RdRps) play a key role in the life cycle of
    RNA viruses and impact their immunobiology. The arenavirus lymphocytic choriomeningitis
    virus (LCMV) strain Clone 13 provides a benchmark model for studying chronic infection.
    A major genetic determinant for its ability to persist maps to a single amino
    acid exchange in the viral L protein, which exhibits RdRp activity, yet its functional
    consequences remain elusive. To unravel the L protein interactions with the host
    proteome, we engineered infectious L protein-tagged LCMV virions by reverse genetics.
    A subsequent mass-spectrometric analysis of L protein pulldowns from infected
    human cells revealed a comprehensive network of interacting host proteins. The
    obtained LCMV L protein interactome was bioinformatically integrated with known
    host protein interactors of RdRps from other RNA viruses, emphasizing interconnected
    modules of human proteins. Functional characterization of selected interactors
    highlighted proviral (DDX3X) as well as antiviral (NKRF, TRIM21) host factors.
    To corroborate these findings, we infected Trim21-/-mice with LCMV and found impaired
    virus control in chronic infection. These results provide insights into the complex
    interactions of the arenavirus LCMV and other viral RdRps with the host proteome
    and contribute to a better molecular understanding of how chronic viruses interact
    with their host.
article_number: e1006758
article_processing_charge: No
author:
- first_name: Kseniya
  full_name: Khamina, Kseniya
  last_name: Khamina
- first_name: Alexander
  full_name: Lercher, Alexander
  last_name: Lercher
- first_name: Michael
  full_name: Caldera, Michael
  last_name: Caldera
- first_name: Christopher
  full_name: Schliehe, Christopher
  last_name: Schliehe
- first_name: Bojan
  full_name: Vilagos, Bojan
  last_name: Vilagos
- first_name: Mehmet
  full_name: Sahin, Mehmet
  last_name: Sahin
- first_name: Lindsay
  full_name: Kosack, Lindsay
  last_name: Kosack
- first_name: Anannya
  full_name: Bhattacharya, Anannya
  last_name: Bhattacharya
- first_name: Peter
  full_name: Májek, Peter
  last_name: Májek
- first_name: Alexey
  full_name: Stukalov, Alexey
  last_name: Stukalov
- first_name: Roberto
  full_name: Sacco, Roberto
  id: 42C9F57E-F248-11E8-B48F-1D18A9856A87
  last_name: Sacco
- first_name: Leo
  full_name: James, Leo
  last_name: James
- first_name: Daniel
  full_name: Pinschewer, Daniel
  last_name: Pinschewer
- first_name: Keiryn
  full_name: Bennett, Keiryn
  last_name: Bennett
- first_name: Jörg
  full_name: Menche, Jörg
  last_name: Menche
- first_name: Andreas
  full_name: Bergthaler, Andreas
  last_name: Bergthaler
citation:
  ama: Khamina K, Lercher A, Caldera M, et al. Characterization of host proteins interacting
    with the lymphocytic choriomeningitis virus L protein. <i>PLoS Pathogens</i>.
    2017;13(12). doi:<a href="https://doi.org/10.1371/journal.ppat.1006758">10.1371/journal.ppat.1006758</a>
  apa: Khamina, K., Lercher, A., Caldera, M., Schliehe, C., Vilagos, B., Sahin, M.,
    … Bergthaler, A. (2017). Characterization of host proteins interacting with the
    lymphocytic choriomeningitis virus L protein. <i>PLoS Pathogens</i>. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.ppat.1006758">https://doi.org/10.1371/journal.ppat.1006758</a>
  chicago: Khamina, Kseniya, Alexander Lercher, Michael Caldera, Christopher Schliehe,
    Bojan Vilagos, Mehmet Sahin, Lindsay Kosack, et al. “Characterization of Host
    Proteins Interacting with the Lymphocytic Choriomeningitis Virus L Protein.” <i>PLoS
    Pathogens</i>. Public Library of Science, 2017. <a href="https://doi.org/10.1371/journal.ppat.1006758">https://doi.org/10.1371/journal.ppat.1006758</a>.
  ieee: K. Khamina <i>et al.</i>, “Characterization of host proteins interacting with
    the lymphocytic choriomeningitis virus L protein,” <i>PLoS Pathogens</i>, vol.
    13, no. 12. Public Library of Science, 2017.
  ista: Khamina K, Lercher A, Caldera M, Schliehe C, Vilagos B, Sahin M, Kosack L,
    Bhattacharya A, Májek P, Stukalov A, Sacco R, James L, Pinschewer D, Bennett K,
    Menche J, Bergthaler A. 2017. Characterization of host proteins interacting with
    the lymphocytic choriomeningitis virus L protein. PLoS Pathogens. 13(12), e1006758.
  mla: Khamina, Kseniya, et al. “Characterization of Host Proteins Interacting with
    the Lymphocytic Choriomeningitis Virus L Protein.” <i>PLoS Pathogens</i>, vol.
    13, no. 12, e1006758, Public Library of Science, 2017, doi:<a href="https://doi.org/10.1371/journal.ppat.1006758">10.1371/journal.ppat.1006758</a>.
  short: K. Khamina, A. Lercher, M. Caldera, C. Schliehe, B. Vilagos, M. Sahin, L.
    Kosack, A. Bhattacharya, P. Májek, A. Stukalov, R. Sacco, L. James, D. Pinschewer,
    K. Bennett, J. Menche, A. Bergthaler, PLoS Pathogens 13 (2017).
date_created: 2018-12-11T11:47:03Z
date_published: 2017-12-01T00:00:00Z
date_updated: 2025-09-18T09:43:05Z
day: '01'
ddc:
- '576'
- '616'
department:
- _id: GaNo
doi: 10.1371/journal.ppat.1006758
external_id:
  isi:
  - '000419019800019'
file:
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  creator: system
  date_created: 2018-12-12T10:12:26Z
  date_updated: 2020-07-14T12:46:44Z
  file_id: '4944'
  file_name: IST-2018-931-v1+1_journal.ppat.1006758.pdf
  file_size: 4106772
  relation: main_file
file_date_updated: 2020-07-14T12:46:44Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: PLoS Pathogens
publication_identifier:
  issn:
  - 1553-7366
publication_status: published
publisher: Public Library of Science
publist_id: '7276'
pubrep_id: '931'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Characterization of host proteins interacting with the lymphocytic choriomeningitis
  virus L protein
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 13
year: '2017'
...
---
_id: '541'
abstract:
- lang: eng
  text: 'While we have good understanding of bacterial metabolism at the population
    level, we know little about the metabolic behavior of individual cells: do single
    cells in clonal populations sometimes specialize on different metabolic pathways?
    Such metabolic specialization could be driven by stochastic gene expression and
    could provide individual cells with growth benefits of specialization. We measured
    the degree of phenotypic specialization in two parallel metabolic pathways, the
    assimilation of glucose and arabinose. We grew Escherichia coli in chemostats,
    and used isotope-labeled sugars in combination with nanometer-scale secondary
    ion mass spectrometry and mathematical modeling to quantify sugar assimilation
    at the single-cell level. We found large variation in metabolic activities between
    single cells, both in absolute assimilation and in the degree to which individual
    cells specialize in the assimilation of different sugars. Analysis of transcriptional
    reporters indicated that this variation was at least partially based on cell-to-cell
    variation in gene expression. Metabolic differences between cells in clonal populations
    could potentially reduce metabolic incompatibilities between different pathways,
    and increase the rate at which parallel reactions can be performed.'
article_number: e1007122
article_processing_charge: No
author:
- first_name: Nela
  full_name: Nikolic, Nela
  id: 42D9CABC-F248-11E8-B48F-1D18A9856A87
  last_name: Nikolic
  orcid: 0000-0001-9068-6090
- first_name: Frank
  full_name: Schreiber, Frank
  last_name: Schreiber
- first_name: Alma
  full_name: Dal Co, Alma
  last_name: Dal Co
- first_name: Daniel
  full_name: Kiviet, Daniel
  last_name: Kiviet
- first_name: Tobias
  full_name: Bergmiller, Tobias
  id: 2C471CFA-F248-11E8-B48F-1D18A9856A87
  last_name: Bergmiller
  orcid: 0000-0001-5396-4346
- first_name: Sten
  full_name: Littmann, Sten
  last_name: Littmann
- first_name: Marcel
  full_name: Kuypers, Marcel
  last_name: Kuypers
- first_name: Martin
  full_name: Ackermann, Martin
  last_name: Ackermann
citation:
  ama: Nikolic N, Schreiber F, Dal Co A, et al. Cell-to-cell variation and specialization
    in sugar metabolism in clonal bacterial populations. <i>PLoS Genetics</i>. 2017;13(12).
    doi:<a href="https://doi.org/10.1371/journal.pgen.1007122">10.1371/journal.pgen.1007122</a>
  apa: Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann,
    S., … Ackermann, M. (2017). Cell-to-cell variation and specialization in sugar
    metabolism in clonal bacterial populations. <i>PLoS Genetics</i>. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.pgen.1007122">https://doi.org/10.1371/journal.pgen.1007122</a>
  chicago: Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller,
    Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Cell-to-Cell Variation and
    Specialization in Sugar Metabolism in Clonal Bacterial Populations.” <i>PLoS Genetics</i>.
    Public Library of Science, 2017. <a href="https://doi.org/10.1371/journal.pgen.1007122">https://doi.org/10.1371/journal.pgen.1007122</a>.
  ieee: N. Nikolic <i>et al.</i>, “Cell-to-cell variation and specialization in sugar
    metabolism in clonal bacterial populations,” <i>PLoS Genetics</i>, vol. 13, no.
    12. Public Library of Science, 2017.
  ista: Nikolic N, Schreiber F, Dal Co A, Kiviet D, Bergmiller T, Littmann S, Kuypers
    M, Ackermann M. 2017. Cell-to-cell variation and specialization in sugar metabolism
    in clonal bacterial populations. PLoS Genetics. 13(12), e1007122.
  mla: Nikolic, Nela, et al. “Cell-to-Cell Variation and Specialization in Sugar Metabolism
    in Clonal Bacterial Populations.” <i>PLoS Genetics</i>, vol. 13, no. 12, e1007122,
    Public Library of Science, 2017, doi:<a href="https://doi.org/10.1371/journal.pgen.1007122">10.1371/journal.pgen.1007122</a>.
  short: N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann,
    M. Kuypers, M. Ackermann, PLoS Genetics 13 (2017).
corr_author: '1'
date_created: 2018-12-11T11:47:04Z
date_published: 2017-12-18T00:00:00Z
date_updated: 2025-09-18T09:42:09Z
day: '18'
ddc:
- '576'
- '579'
department:
- _id: CaGu
doi: 10.1371/journal.pgen.1007122
ec_funded: 1
external_id:
  isi:
  - '000419103000015'
file:
- access_level: open_access
  checksum: 22426d9382f21554bad5fa5967afcfd0
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:35Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5088'
  file_name: IST-2018-959-v1+1_2017_Nikolic_Cell-to-cell.pdf
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file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: PLoS Genetics
publication_identifier:
  issn:
  - 1553-7390
publication_status: published
publisher: Public Library of Science
publist_id: '7275'
pubrep_id: '959'
quality_controlled: '1'
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    status: public
scopus_import: '1'
status: public
title: Cell-to-cell variation and specialization in sugar metabolism in clonal bacterial
  populations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 13
year: '2017'
...
---
_id: '545'
abstract:
- lang: eng
  text: Development of vascular tissue is a remarkable example of intercellular communication
    and coordinated development involving hormonal signaling and tissue polarity.
    Thus far, studies on vascular patterning and regeneration have been conducted
    mainly in trees—woody plants—with a well-developed layer of vascular cambium and
    secondary tissues. Trees are difficult to use as genetic models, i.e., due to
    long generation time, unstable environmental conditions, and lack of available
    mutants and transgenic lines. Therefore, the use of the main genetic model plant
    Arabidopsis thaliana (L.) Heynh., with a wealth of available marker and transgenic
    lines, provides a unique opportunity to address molecular mechanism of vascular
    tissue formation and regeneration. With specific treatments, the tiny weed Arabidopsis
    can serve as a model to understand the growth of mighty trees and interconnect
    a tree physiology with molecular genetics and cell biology of Arabidopsis.
alternative_title:
- Agricultural and Biological Sciences
article_processing_charge: No
author:
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Mazur E, Friml J. Vascular tissue development and regeneration in the model
    plant arabidopsis. In: Jurić S, ed. <i>Plant Engineering</i>. Plant Engineering.
    IntechOpen; 2017:113-140. doi:<a href="https://doi.org/10.5772/intechopen.69712">10.5772/intechopen.69712</a>'
  apa: Mazur, E., &#38; Friml, J. (2017). Vascular tissue development and regeneration
    in the model plant arabidopsis. In S. Jurić (Ed.), <i>Plant Engineering</i> (pp.
    113–140). IntechOpen. <a href="https://doi.org/10.5772/intechopen.69712">https://doi.org/10.5772/intechopen.69712</a>
  chicago: Mazur, Ewa, and Jiří Friml. “Vascular Tissue Development and Regeneration
    in the Model Plant Arabidopsis.” In <i>Plant Engineering</i>, edited by Snježana
    Jurić, 113–40. Plant Engineering. IntechOpen, 2017. <a href="https://doi.org/10.5772/intechopen.69712">https://doi.org/10.5772/intechopen.69712</a>.
  ieee: E. Mazur and J. Friml, “Vascular tissue development and regeneration in the
    model plant arabidopsis,” in <i>Plant Engineering</i>, S. Jurić, Ed. IntechOpen,
    2017, pp. 113–140.
  ista: 'Mazur E, Friml J. 2017.Vascular tissue development and regeneration in the
    model plant arabidopsis. In: Plant Engineering. Agricultural and Biological Sciences,
    , 113–140.'
  mla: Mazur, Ewa, and Jiří Friml. “Vascular Tissue Development and Regeneration in
    the Model Plant Arabidopsis.” <i>Plant Engineering</i>, edited by Snježana Jurić,
    IntechOpen, 2017, pp. 113–40, doi:<a href="https://doi.org/10.5772/intechopen.69712">10.5772/intechopen.69712</a>.
  short: E. Mazur, J. Friml, in:, S. Jurić (Ed.), Plant Engineering, IntechOpen, 2017,
    pp. 113–140.
date_created: 2018-12-11T11:47:05Z
date_published: 2017-11-17T00:00:00Z
date_updated: 2025-09-22T08:43:49Z
day: '17'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.5772/intechopen.69712
ec_funded: 1
editor:
- first_name: Snježana
  full_name: Jurić, Snježana
  last_name: Jurić
file:
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  checksum: e1f05e5850dfd9f9434d2d373ca61941
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:49Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '4969'
  file_name: IST-2018-929-v1+1_56106.pdf
  file_size: 7443683
  relation: main_file
file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 113 - 140
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Plant Engineering
publication_status: published
publisher: IntechOpen
publist_id: '7269'
pubrep_id: '929'
quality_controlled: '1'
related_material:
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    status: public
series_title: Plant Engineering
status: public
title: Vascular tissue development and regeneration in the model plant arabidopsis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
OA_place: publisher
OA_type: gold
_id: '5450'
abstract:
- lang: eng
  text: 'In this report the implementation of the institutional data repository IST
    DataRep at IST Austria will be covered: Starting with the research phase when
    requirements for a repository were established, the procedure of choosing a repository-software
    and its customization based on the results of user-testings will be discussed.
    Followed by reflections on the marketing strategies in regard of impact, and at
    the end sharing some experiences of one year operating IST DataRep.'
article_processing_charge: No
author:
- first_name: Barbara
  full_name: Petritsch, Barbara
  id: 406048EC-F248-11E8-B48F-1D18A9856A87
  last_name: Petritsch
  orcid: 0000-0003-2724-4614
citation:
  ama: Petritsch B. <i>Implementing the Institutional Data Repository IST DataRep</i>.
    Institute of Science and Technology Austria; 2017.
  apa: Petritsch, B. (2017). <i>Implementing the institutional data repository IST
    DataRep</i>. Institute of Science and Technology Austria.
  chicago: Petritsch, Barbara. <i>Implementing the Institutional Data Repository IST
    DataRep</i>. Institute of Science and Technology Austria, 2017.
  ieee: B. Petritsch, <i>Implementing the institutional data repository IST DataRep</i>.
    Institute of Science and Technology Austria, 2017.
  ista: Petritsch B. 2017. Implementing the institutional data repository IST DataRep,
    Institute of Science and Technology Austria,p.
  mla: Petritsch, Barbara. <i>Implementing the Institutional Data Repository IST DataRep</i>.
    Institute of Science and Technology Austria, 2017.
  short: B. Petritsch, Implementing the Institutional Data Repository IST DataRep,
    Institute of Science and Technology Austria, 2017.
corr_author: '1'
date_created: 2018-12-12T11:39:24Z
date_published: 2017-06-26T00:00:00Z
date_updated: 2025-07-10T11:52:50Z
day: '26'
ddc:
- '020'
department:
- _id: E-Lib
file:
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  creator: system
  date_created: 2018-12-12T11:53:22Z
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  file_id: '5483'
  file_name: IST-2017-724-v1+1_DataRep_Project_Report_2017.pdf
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file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication_status: published
publisher: Institute of Science and Technology Austria
pubrep_id: '724'
status: public
title: Implementing the institutional data repository IST DataRep
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '5455'
abstract:
- lang: eng
  text: 'A fundamental algorithmic problem at the heart of static analysis is Dyck
    reachability. The input is a graphwhere the edges are labeled with different types
    of opening and closing parentheses, and the reachabilityinformation is computed
    via paths whose parentheses are properly matched. We present new results for Dyckreachability
    problems with applications to alias analysis and data-dependence analysis. Our
    main contributions,that include improved upper bounds as well as lower bounds
    that establish optimality guarantees, are asfollows:First, we consider Dyck reachability
    on bidirected graphs, which is the standard way of performing field-sensitive
    points-to analysis. Given a bidirected graph withnnodes andmedges, we present:
    (i) an algorithmwith worst-case running timeO(m+n·α(n)), whereα(n)is the inverse
    Ackermann function, improving thepreviously knownO(n2)time bound; (ii) a matching
    lower bound that shows that our algorithm is optimalwrt to worst-case complexity;
    and (iii) an optimal average-case upper bound ofO(m)time, improving thepreviously
    knownO(m·logn)bound.Second, we consider the problem of context-sensitive data-dependence
    analysis, where the task is to obtainanalysis summaries of library code in the
    presence of callbacks. Our algorithm preprocesses libraries in almostlinear time,
    after which the contribution of the library in the complexity of the client analysis
    is only linear,and only wrt the number of call sites.Third, we prove that combinatorial
    algorithms for Dyck reachability on general graphs with truly sub-cubic bounds
    cannot be obtained without obtaining sub-cubic combinatorial algorithms for Boolean
    MatrixMultiplication, which is a long-standing open problem. Thus we establish
    that the existing combinatorialalgorithms for Dyck reachability are (conditionally)
    optimal for general graphs. We also show that the samehardness holds for graphs
    of constant treewidth.Finally, we provide a prototype implementation of our algorithms
    for both alias analysis and data-dependenceanalysis. Our experimental evaluation
    demonstrates that the new algorithms significantly outperform allexisting methods
    on the two problems, over real-world benchmarks.'
alternative_title:
- IST Austria Technical Report
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Bhavya
  full_name: Choudhary, Bhavya
  last_name: Choudhary
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
citation:
  ama: Chatterjee K, Choudhary B, Pavlogiannis A. <i>Optimal Dyck Reachability for
    Data-Dependence and Alias Analysis</i>. IST Austria; 2017. doi:<a href="https://doi.org/10.15479/AT:IST-2017-870-v1-1">10.15479/AT:IST-2017-870-v1-1</a>
  apa: Chatterjee, K., Choudhary, B., &#38; Pavlogiannis, A. (2017). <i>Optimal Dyck
    reachability for data-dependence and alias analysis</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2017-870-v1-1">https://doi.org/10.15479/AT:IST-2017-870-v1-1</a>
  chicago: Chatterjee, Krishnendu, Bhavya Choudhary, and Andreas Pavlogiannis. <i>Optimal
    Dyck Reachability for Data-Dependence and Alias Analysis</i>. IST Austria, 2017.
    <a href="https://doi.org/10.15479/AT:IST-2017-870-v1-1">https://doi.org/10.15479/AT:IST-2017-870-v1-1</a>.
  ieee: K. Chatterjee, B. Choudhary, and A. Pavlogiannis, <i>Optimal Dyck reachability
    for data-dependence and alias analysis</i>. IST Austria, 2017.
  ista: Chatterjee K, Choudhary B, Pavlogiannis A. 2017. Optimal Dyck reachability
    for data-dependence and alias analysis, IST Austria, 37p.
  mla: Chatterjee, Krishnendu, et al. <i>Optimal Dyck Reachability for Data-Dependence
    and Alias Analysis</i>. IST Austria, 2017, doi:<a href="https://doi.org/10.15479/AT:IST-2017-870-v1-1">10.15479/AT:IST-2017-870-v1-1</a>.
  short: K. Chatterjee, B. Choudhary, A. Pavlogiannis, Optimal Dyck Reachability for
    Data-Dependence and Alias Analysis, IST Austria, 2017.
date_created: 2018-12-12T11:39:26Z
date_published: 2017-10-23T00:00:00Z
date_updated: 2025-04-15T08:12:18Z
day: '23'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2017-870-v1-1
file:
- access_level: open_access
  checksum: 177a84a46e3ac17e87b31534ad16a4c9
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:02Z
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  file_name: IST-2017-870-v1+1_main.pdf
  file_size: 960491
  relation: main_file
file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '37'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '870'
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    relation: later_version
    status: public
status: public
title: Optimal Dyck reachability for data-dependence and alias analysis
type: technical_report
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2017'
...