---
_id: '9710'
abstract:
- lang: eng
  text: Much of quantitative genetics is based on the ‘infinitesimal model’, under
    which selection has a negligible effect on the genetic variance. This is typically
    justified by assuming a very large number of loci with additive effects. However,
    it applies even when genes interact, provided that the number of loci is large
    enough that selection on each of them is weak relative to random drift. In the
    long term, directional selection will change allele frequencies, but even then,
    the effects of epistasis on the ultimate change in trait mean due to selection
    may be modest. Stabilising selection can maintain many traits close to their optima,
    even when the underlying alleles are weakly selected. However, the number of traits
    that can be optimised is apparently limited to ~4Ne by the ‘drift load’, and this
    is hard to reconcile with the apparent complexity of many organisms. Just as for
    the mutation load, this limit can be evaded by a particular form of negative epistasis.
    A more robust limit is set by the variance in reproductive success. This suggests
    that selection accumulates information most efficiently in the infinitesimal regime,
    when selection on individual alleles is weak, and comparable with random drift.
    A review of evidence on selection strength suggests that although most variance
    in fitness may be because of alleles with large Nes, substantial amounts of adaptation
    may be because of alleles in the infinitesimal regime, in which epistasis has
    modest effects.
article_processing_charge: No
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Barton NH. Data from: How does epistasis influence the response to selection?
    2016. doi:<a href="https://doi.org/10.5061/dryad.s5s7r">10.5061/dryad.s5s7r</a>'
  apa: 'Barton, N. H. (2016). Data from: How does epistasis influence the response
    to selection? Dryad. <a href="https://doi.org/10.5061/dryad.s5s7r">https://doi.org/10.5061/dryad.s5s7r</a>'
  chicago: 'Barton, Nicholas H. “Data from: How Does Epistasis Influence the Response
    to Selection?” Dryad, 2016. <a href="https://doi.org/10.5061/dryad.s5s7r">https://doi.org/10.5061/dryad.s5s7r</a>.'
  ieee: 'N. H. Barton, “Data from: How does epistasis influence the response to selection?”
    Dryad, 2016.'
  ista: 'Barton NH. 2016. Data from: How does epistasis influence the response to
    selection?, Dryad, <a href="https://doi.org/10.5061/dryad.s5s7r">10.5061/dryad.s5s7r</a>.'
  mla: 'Barton, Nicholas H. <i>Data from: How Does Epistasis Influence the Response
    to Selection?</i> Dryad, 2016, doi:<a href="https://doi.org/10.5061/dryad.s5s7r">10.5061/dryad.s5s7r</a>.'
  short: N.H. Barton, (2016).
date_created: 2021-07-23T11:45:47Z
date_published: 2016-09-23T00:00:00Z
date_updated: 2025-04-15T07:11:02Z
day: '23'
department:
- _id: NiBa
doi: 10.5061/dryad.s5s7r
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.s5s7r
month: '09'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '1199'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: How does epistasis influence the response to selection?'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '9720'
abstract:
- lang: eng
  text: 'Summary: Declining populations of bee pollinators are a cause of concern,
    with major repercussions for biodiversity loss and food security. RNA viruses
    associated with honeybees represent a potential threat to other insect pollinators,
    but the extent of this threat is poorly understood. This study aims to attain
    a detailed understanding of the current and ongoing risk of emerging infectious
    disease (EID) transmission between managed and wild pollinator species across
    a wide range of RNA viruses. Within a structured large-scale national survey across
    26 independent sites, we quantify the prevalence and pathogen loads of multiple
    RNA viruses in co-occurring managed honeybee (Apis mellifera) and wild bumblebee
    (Bombus spp.) populations. We then construct models that compare virus prevalence
    between wild and managed pollinators. Multiple RNA viruses associated with honeybees
    are widespread in sympatric wild bumblebee populations. Virus prevalence in honeybees
    is a significant predictor of virus prevalence in bumblebees, but we remain cautious
    in speculating over the principle direction of pathogen transmission. We demonstrate
    species-specific differences in prevalence, indicating significant variation in
    disease susceptibility or tolerance. Pathogen loads within individual bumblebees
    may be high and in the case of at least one RNA virus, prevalence is higher in
    wild bumblebees than in managed honeybee populations. Our findings indicate widespread
    transmission of RNA viruses between managed and wild bee pollinators, pointing
    to an interconnected network of potential disease pressures within and among pollinator
    species. In the context of the biodiversity crisis, our study emphasizes the importance
    of targeting a wide range of pathogens and defining host associations when considering
    potential drivers of population decline.'
article_processing_charge: No
author:
- first_name: Dino
  full_name: Mcmahon, Dino
  last_name: Mcmahon
- first_name: Matthias
  full_name: Fürst, Matthias
  id: 393B1196-F248-11E8-B48F-1D18A9856A87
  last_name: Fürst
  orcid: 0000-0002-3712-925X
- first_name: Jesicca
  full_name: Caspar, Jesicca
  last_name: Caspar
- first_name: Panagiotis
  full_name: Theodorou, Panagiotis
  last_name: Theodorou
- first_name: Mark
  full_name: Brown, Mark
  last_name: Brown
- first_name: Robert
  full_name: Paxton, Robert
  last_name: Paxton
citation:
  ama: 'Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. Data from: A
    sting in the spit: widespread cross-infection of multiple RNA viruses across wild
    and managed bees. 2016. doi:<a href="https://doi.org/10.5061/dryad.4b565">10.5061/dryad.4b565</a>'
  apa: 'Mcmahon, D., Fürst, M., Caspar, J., Theodorou, P., Brown, M., &#38; Paxton,
    R. (2016). Data from: A sting in the spit: widespread cross-infection of multiple
    RNA viruses across wild and managed bees. Dryad. <a href="https://doi.org/10.5061/dryad.4b565">https://doi.org/10.5061/dryad.4b565</a>'
  chicago: 'Mcmahon, Dino, Matthias Fürst, Jesicca Caspar, Panagiotis Theodorou, Mark
    Brown, and Robert Paxton. “Data from: A Sting in the Spit: Widespread Cross-Infection
    of Multiple RNA Viruses across Wild and Managed Bees.” Dryad, 2016. <a href="https://doi.org/10.5061/dryad.4b565">https://doi.org/10.5061/dryad.4b565</a>.'
  ieee: 'D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, and R. Paxton, “Data
    from: A sting in the spit: widespread cross-infection of multiple RNA viruses
    across wild and managed bees.” Dryad, 2016.'
  ista: 'Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. 2016. Data
    from: A sting in the spit: widespread cross-infection of multiple RNA viruses
    across wild and managed bees, Dryad, <a href="https://doi.org/10.5061/dryad.4b565">10.5061/dryad.4b565</a>.'
  mla: 'Mcmahon, Dino, et al. <i>Data from: A Sting in the Spit: Widespread Cross-Infection
    of Multiple RNA Viruses across Wild and Managed Bees</i>. Dryad, 2016, doi:<a
    href="https://doi.org/10.5061/dryad.4b565">10.5061/dryad.4b565</a>.'
  short: D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).
date_created: 2021-07-26T09:14:19Z
date_published: 2016-01-22T00:00:00Z
date_updated: 2025-09-23T07:26:23Z
day: '22'
department:
- _id: SyCr
doi: 10.5061/dryad.4b565
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.4b565
month: '01'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '1855'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: A sting in the spit: widespread cross-infection of multiple RNA
  viruses across wild and managed bees'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
---
_id: '478'
abstract:
- lang: eng
  text: 'Magic: the Gathering is a game about magical combat for any number of players.
    Formally it is a zero-sum, imperfect information stochastic game that consists
    of a potentially unbounded number of steps. We consider the problem of deciding
    if a move is legal in a given single step of Magic. We show that the problem is
    (a) coNP-complete in general; and (b) in P if either of two small sets of cards
    are not used. Our lower bound holds even for single-player Magic games. The significant
    aspects of our results are as follows: First, in most real-life game problems,
    the task of deciding whether a given move is legal in a single step is trivial,
    and the computationally hard task is to find the best sequence of legal moves
    in the presence of multiple players. In contrast, quite uniquely our hardness
    result holds for single step and with only one-player. Second, we establish efficient
    algorithms for important special cases of Magic.'
alternative_title:
- Frontiers in Artificial Intelligence and Applications
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
citation:
  ama: 'Chatterjee K, Ibsen-Jensen R. The complexity of deciding legality of a single
    step of magic: The gathering. In: Vol 285. IOS Press; 2016:1432-1439. doi:<a href="https://doi.org/10.3233/978-1-61499-672-9-1432">10.3233/978-1-61499-672-9-1432</a>'
  apa: 'Chatterjee, K., &#38; Ibsen-Jensen, R. (2016). The complexity of deciding
    legality of a single step of magic: The gathering (Vol. 285, pp. 1432–1439). Presented
    at the ECAI: European Conference on Artificial Intelligence, The Hague, Netherlands:
    IOS Press. <a href="https://doi.org/10.3233/978-1-61499-672-9-1432">https://doi.org/10.3233/978-1-61499-672-9-1432</a>'
  chicago: 'Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. “The Complexity of Deciding
    Legality of a Single Step of Magic: The Gathering,” 285:1432–39. IOS Press, 2016.
    <a href="https://doi.org/10.3233/978-1-61499-672-9-1432">https://doi.org/10.3233/978-1-61499-672-9-1432</a>.'
  ieee: 'K. Chatterjee and R. Ibsen-Jensen, “The complexity of deciding legality of
    a single step of magic: The gathering,” presented at the ECAI: European Conference
    on Artificial Intelligence, The Hague, Netherlands, 2016, vol. 285, pp. 1432–1439.'
  ista: 'Chatterjee K, Ibsen-Jensen R. 2016. The complexity of deciding legality of
    a single step of magic: The gathering. ECAI: European Conference on Artificial
    Intelligence, Frontiers in Artificial Intelligence and Applications, vol. 285,
    1432–1439.'
  mla: 'Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. <i>The Complexity of Deciding
    Legality of a Single Step of Magic: The Gathering</i>. Vol. 285, IOS Press, 2016,
    pp. 1432–39, doi:<a href="https://doi.org/10.3233/978-1-61499-672-9-1432">10.3233/978-1-61499-672-9-1432</a>.'
  short: K. Chatterjee, R. Ibsen-Jensen, in:, IOS Press, 2016, pp. 1432–1439.
conference:
  end_date: 2016-09-02
  location: The Hague, Netherlands
  name: 'ECAI: European Conference on Artificial Intelligence'
  start_date: 2016-08-29
corr_author: '1'
date_created: 2018-12-11T11:46:41Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-09-22T14:26:27Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.3233/978-1-61499-672-9-1432
external_id:
  isi:
  - '000385793700166'
file:
- access_level: open_access
  checksum: 848043c812ace05e459579c923f3d3cf
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:07:59Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4658'
  file_name: IST-2018-950-v1+1_2016_Chatterjee_The_complexity.pdf
  file_size: 2116225
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '       285'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 1432 - 1439
publication_status: published
publisher: IOS Press
publist_id: '7342'
pubrep_id: '950'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The complexity of deciding legality of a single step of magic: The gathering'
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 285
year: '2016'
...
---
_id: '479'
abstract:
- lang: eng
  text: Clinical guidelines and decision support systems (DSS) play an important role
    in daily practices of medicine. Many text-based guidelines have been encoded for
    work-flow simulation of DSS to automate health care. During the collaboration
    with Carle hospital to develop a DSS, we identify that, for some complex and life-critical
    diseases, it is highly desirable to automatically rigorously verify some complex
    temporal properties in guidelines, which brings new challenges to current simulation
    based DSS with limited support of automatical formal verification and real-time
    data analysis. In this paper, we conduct the first study on applying runtime verification
    to cooperate with current DSS based on real-time data. Within the proposed technique,
    a user-friendly domain specific language, named DRTV, is designed to specify vital
    real-time data sampled by medical devices and temporal properties originated from
    clinical guidelines. Some interfaces are developed for data acquisition and communication.
    Then, for medical practice scenarios described in DRTV model, we will automatically
    generate event sequences and runtime property verifier automata. If a temporal
    property violates, real-time warnings will be produced by the formal verifier
    and passed to medical DSS. We have used DRTV to specify different kinds of medical
    care scenarios, and applied the proposed technique to assist existing DSS. As
    presented in experiment results, in terms of warning detection, it outperforms
    the only use of DSS or human inspection, and improves the quality of clinical
    health care of hospital
acknowledgement: "This work is supported by NSF CNS 13-30077, NSF CNS 13-29886, NSF
  CNS 15-45002, and NSFC 61303014.\r\nThe authors thank Dr.  Bobby and Dr.  Hill at
  Carle Hospital, Urbana, IL for their help with the discussion on medical  knowledge.\r\n\r\n"
alternative_title:
- Proceedings International Conference on Software Engineering
article_processing_charge: No
author:
- first_name: Yu
  full_name: Jiang, Yu
  last_name: Jiang
- first_name: Han
  full_name: Liu, Han
  last_name: Liu
- first_name: Hui
  full_name: Kong, Hui
  id: 3BDE25AA-F248-11E8-B48F-1D18A9856A87
  last_name: Kong
  orcid: 0000-0002-3066-6941
- first_name: Rui
  full_name: Wang, Rui
  last_name: Wang
- first_name: Mohamad
  full_name: Hosseini, Mohamad
  last_name: Hosseini
- first_name: Jiaguang
  full_name: Sun, Jiaguang
  last_name: Sun
- first_name: Lui
  full_name: Sha, Lui
  last_name: Sha
citation:
  ama: 'Jiang Y, Liu H, Kong H, et al. Use runtime verification to improve the quality
    of medical care practice. In: <i>Proceedings of the 38th International Conference
    on Software Engineering Companion </i>. IEEE; 2016:112-121. doi:<a href="https://doi.org/10.1145/2889160.2889233">10.1145/2889160.2889233</a>'
  apa: 'Jiang, Y., Liu, H., Kong, H., Wang, R., Hosseini, M., Sun, J., &#38; Sha,
    L. (2016). Use runtime verification to improve the quality of medical care practice.
    In <i>Proceedings of the 38th International Conference on Software Engineering
    Companion </i> (pp. 112–121). Austin, TX, USA: IEEE. <a href="https://doi.org/10.1145/2889160.2889233">https://doi.org/10.1145/2889160.2889233</a>'
  chicago: Jiang, Yu, Han Liu, Hui Kong, Rui Wang, Mohamad Hosseini, Jiaguang Sun,
    and Lui Sha. “Use Runtime Verification to Improve the Quality of Medical Care
    Practice.” In <i>Proceedings of the 38th International Conference on Software
    Engineering Companion </i>, 112–21. IEEE, 2016. <a href="https://doi.org/10.1145/2889160.2889233">https://doi.org/10.1145/2889160.2889233</a>.
  ieee: Y. Jiang <i>et al.</i>, “Use runtime verification to improve the quality of
    medical care practice,” in <i>Proceedings of the 38th International Conference
    on Software Engineering Companion </i>, Austin, TX, USA, 2016, pp. 112–121.
  ista: 'Jiang Y, Liu H, Kong H, Wang R, Hosseini M, Sun J, Sha L. 2016. Use runtime
    verification to improve the quality of medical care practice. Proceedings of the
    38th International Conference on Software Engineering Companion . ICSE: International
    Conference on Software Engineering, Proceedings International Conference on Software
    Engineering, , 112–121.'
  mla: Jiang, Yu, et al. “Use Runtime Verification to Improve the Quality of Medical
    Care Practice.” <i>Proceedings of the 38th International Conference on Software
    Engineering Companion </i>, IEEE, 2016, pp. 112–21, doi:<a href="https://doi.org/10.1145/2889160.2889233">10.1145/2889160.2889233</a>.
  short: Y. Jiang, H. Liu, H. Kong, R. Wang, M. Hosseini, J. Sun, L. Sha, in:, Proceedings
    of the 38th International Conference on Software Engineering Companion , IEEE,
    2016, pp. 112–121.
conference:
  end_date: 2016-05-22
  location: Austin, TX, USA
  name: 'ICSE: International Conference on Software Engineering'
  start_date: 2016-05-14
date_created: 2018-12-11T11:46:42Z
date_published: 2016-05-14T00:00:00Z
date_updated: 2025-09-22T14:22:48Z
day: '14'
department:
- _id: ToHe
doi: 10.1145/2889160.2889233
external_id:
  isi:
  - '000402155300016'
isi: 1
language:
- iso: eng
month: '05'
oa_version: None
page: 112 - 121
publication: 'Proceedings of the 38th International Conference on Software Engineering
  Companion '
publication_status: published
publisher: IEEE
publist_id: '7341'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Use runtime verification to improve the quality of medical care practice
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2016'
...
---
_id: '480'
abstract:
- lang: eng
  text: Graph games provide the foundation for modeling and synthesizing reactive
    processes. In the synthesis of stochastic reactive processes, the traditional
    model is perfect-information stochastic games, where some transitions of the game
    graph are controlled by two adversarial players, and the other transitions are
    executed probabilistically. We consider such games where the objective is the
    conjunction of several quantitative objectives (specified as mean-payoff conditions),
    which we refer to as generalized mean-payoff objectives. The basic decision problem
    asks for the existence of a finite-memory strategy for a player that ensures the
    generalized mean-payoff objective be satisfied with a desired probability against
    all strategies of the opponent. A special case of the decision problem is the
    almost-sure problem where the desired probability is 1. Previous results presented
    a semi-decision procedure for -approximations of the almost-sure problem. In this
    work, we show that both the almost-sure problem as well as the general basic decision
    problem are coNP-complete, significantly improving the previous results. Moreover,
    we show that in the case of 1-player stochastic games, randomized memoryless strategies
    are sufficient and the problem can be solved in polynomial time. In contrast,
    in two-player stochastic games, we show that even with randomized strategies exponential
    memory is required in general, and present a matching exponential upper bound.
    We also study the basic decision problem with infinite-memory strategies and present
    computational complexity results for the problem. Our results are relevant in
    the synthesis of stochastic reactive systems with multiple quantitative requirements.
alternative_title:
- Proceedings Symposium on Logic in Computer Science
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: 'Chatterjee K, Doyen L. Perfect-information stochastic games with generalized
    mean-payoff objectives. In: Vol 05-08-July-2016. IEEE; 2016:247-256. doi:<a href="https://doi.org/10.1145/2933575.2934513">10.1145/2933575.2934513</a>'
  apa: 'Chatterjee, K., &#38; Doyen, L. (2016). Perfect-information stochastic games
    with generalized mean-payoff objectives (Vol. 05-08-July-2016, pp. 247–256). Presented
    at the LICS: Logic in Computer Science, New York, NY, USA: IEEE. <a href="https://doi.org/10.1145/2933575.2934513">https://doi.org/10.1145/2933575.2934513</a>'
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Perfect-Information Stochastic
    Games with Generalized Mean-Payoff Objectives,” 05-08-July-2016:247–56. IEEE,
    2016. <a href="https://doi.org/10.1145/2933575.2934513">https://doi.org/10.1145/2933575.2934513</a>.
  ieee: 'K. Chatterjee and L. Doyen, “Perfect-information stochastic games with generalized
    mean-payoff objectives,” presented at the LICS: Logic in Computer Science, New
    York, NY, USA, 2016, vol. 05-08-July-2016, pp. 247–256.'
  ista: 'Chatterjee K, Doyen L. 2016. Perfect-information stochastic games with generalized
    mean-payoff objectives. LICS: Logic in Computer Science, Proceedings Symposium
    on Logic in Computer Science, vol. 05-08-July-2016, 247–256.'
  mla: Chatterjee, Krishnendu, and Laurent Doyen. <i>Perfect-Information Stochastic
    Games with Generalized Mean-Payoff Objectives</i>. Vol. 05-08-July-2016, IEEE,
    2016, pp. 247–56, doi:<a href="https://doi.org/10.1145/2933575.2934513">10.1145/2933575.2934513</a>.
  short: K. Chatterjee, L. Doyen, in:, IEEE, 2016, pp. 247–256.
conference:
  end_date: 2016-07-08
  location: New York, NY, USA
  name: 'LICS: Logic in Computer Science'
  start_date: 2016-07-05
date_created: 2018-12-11T11:46:42Z
date_published: 2016-07-05T00:00:00Z
date_updated: 2025-09-22T14:22:08Z
day: '05'
department:
- _id: KrCh
doi: 10.1145/2933575.2934513
ec_funded: 1
external_id:
  arxiv:
  - '1604.06376'
  isi:
  - '000387609200025'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1604.06376
month: '07'
oa: 1
oa_version: Preprint
page: 247 - 256
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
  grant_number: ICT15-003
  name: Efficient Algorithms for Computer Aided Verification
publication_status: published
publisher: IEEE
publist_id: '7340'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Perfect-information stochastic games with generalized mean-payoff objectives
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 05-08-July-2016
year: '2016'
...
---
_id: '482'
abstract:
- lang: eng
  text: Nonlinear electro-optical conversion of microwave radiation into the optical
    telecommunication band is achieved within a crystalline whispering gallery mode
    resonator, reaching 0.1% photon number conversion efficiency with MHz bandwidth.
alternative_title:
- Optics InfoBase Conference Papers
article_processing_charge: No
author:
- first_name: Alfredo
  full_name: Rueda, Alfredo
  last_name: Rueda
- first_name: Florian
  full_name: Sedlmeir, Florian
  last_name: Sedlmeir
- first_name: Michele
  full_name: Collodo, Michele
  last_name: Collodo
- first_name: Ulrich
  full_name: Vogl, Ulrich
  last_name: Vogl
- first_name: Birgit
  full_name: Stiller, Birgit
  last_name: Stiller
- first_name: Gerhard
  full_name: Schunk, Gerhard
  last_name: Schunk
- first_name: Dmitry
  full_name: Strekalov, Dmitry
  last_name: Strekalov
- first_name: Christoph
  full_name: Marquardt, Christoph
  last_name: Marquardt
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Oskar
  full_name: Painter, Oskar
  last_name: Painter
- first_name: Gerd
  full_name: Leuchs, Gerd
  last_name: Leuchs
- first_name: Harald
  full_name: Schwefel, Harald
  last_name: Schwefel
citation:
  ama: 'Rueda A, Sedlmeir F, Collodo M, et al. Nonlinear single sideband microwave
    to optical conversion using an electro-optic WGM-resonator. In: Optica Publishing
    Group; 2016. doi:<a href="https://doi.org/10.1364/NP.2016.NTh3A.6">10.1364/NP.2016.NTh3A.6</a>'
  apa: 'Rueda, A., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk, G., …
    Schwefel, H. (2016). Nonlinear single sideband microwave to optical conversion
    using an electro-optic WGM-resonator. Presented at the NP: Nonlinear Photonics,
    Sydney, Australia: Optica Publishing Group. <a href="https://doi.org/10.1364/NP.2016.NTh3A.6">https://doi.org/10.1364/NP.2016.NTh3A.6</a>'
  chicago: Rueda, Alfredo, Florian Sedlmeir, Michele Collodo, Ulrich Vogl, Birgit
    Stiller, Gerhard Schunk, Dmitry Strekalov, et al. “Nonlinear Single Sideband Microwave
    to Optical Conversion Using an Electro-Optic WGM-Resonator.” Optica Publishing
    Group, 2016. <a href="https://doi.org/10.1364/NP.2016.NTh3A.6">https://doi.org/10.1364/NP.2016.NTh3A.6</a>.
  ieee: 'A. Rueda <i>et al.</i>, “Nonlinear single sideband microwave to optical conversion
    using an electro-optic WGM-resonator,” presented at the NP: Nonlinear Photonics,
    Sydney, Australia, 2016.'
  ista: 'Rueda A, Sedlmeir F, Collodo M, Vogl U, Stiller B, Schunk G, Strekalov D,
    Marquardt C, Fink JM, Painter O, Leuchs G, Schwefel H. 2016. Nonlinear single
    sideband microwave to optical conversion using an electro-optic WGM-resonator.
    NP: Nonlinear Photonics, Optics InfoBase Conference Papers, .'
  mla: Rueda, Alfredo, et al. <i>Nonlinear Single Sideband Microwave to Optical Conversion
    Using an Electro-Optic WGM-Resonator</i>. Optica Publishing Group, 2016, doi:<a
    href="https://doi.org/10.1364/NP.2016.NTh3A.6">10.1364/NP.2016.NTh3A.6</a>.
  short: A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov,
    C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, Optica Publishing
    Group, 2016.
conference:
  end_date: 2016-09-08
  location: Sydney, Australia
  name: 'NP: Nonlinear Photonics'
  start_date: 2016-09-05
date_created: 2018-12-11T11:46:43Z
date_published: 2016-08-29T00:00:00Z
date_updated: 2023-10-17T12:16:43Z
day: '29'
department:
- _id: JoFi
doi: 10.1364/NP.2016.NTh3A.6
language:
- iso: eng
month: '08'
oa_version: None
publication_status: published
publisher: Optica Publishing Group
publist_id: '7339'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nonlinear single sideband microwave to optical conversion using an electro-optic
  WGM-resonator
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '510'
abstract:
- lang: eng
  text: 'The CLE (CLAVATA3/Embryo Surrounding Region-related) peptides are small secreted
    signaling peptides that are primarily involved in the regulation of stem cell
    homeostasis in different plant meristems. Particularly, the characterization of
    the CLE41-PXY/TDR signaling pathway has greatly advanced our understanding on
    the potential roles of CLE peptides in vascular development and wood formation.
    Nevertheless, our knowledge on this gene family in a tree species is limited.
    In a recent study, we reported on a systematically investigation of the CLE gene
    family in Populus trichocarpa . The potential roles of PtCLE genes were studied
    by comparative analysis and transcriptional pro fi ling. Among fi fty PtCLE members,
    many PtCLE proteins share identical CLE motifs or contain the same CLE motif as
    that of AtCLEs, while PtCLE genes exhibited either comparable or distinct expression
    patterns comparing to their Arabidopsis counterparts. These fi ndings indicate
    the existence of both functional conservation and functional divergence between
    PtCLEs and their AtCLE orthologues. Our results provide valuable resources for
    future functional investigations of these critical signaling molecules in woody
    plants. '
acknowledgement: 'We are grateful to Dr. Long (Laboratoire de Reproduction et Developpement
  des Plantes,CNRS,INRA,ENSLyon,UCBL,Universite de Lyon,France)for critical reading
  of the article. Work in our group is supported by the National Natural Science Foundation
  of China (31271575; 31200902), the Fundamental Research Funds for the Central Univ
  ersities (GK201103005), the Specialized Research Fund for the Doctoral Program of
  Higher Education from the Ministry of Education of China (20120202120009), the Scientific
  Research Foundation for the Returned Overseas Chinese Scholars, State Education
  Ministry, and the Natural Science Basic Research Plan in Shaanxi Province of China
  (2014JM3064). '
article_number: e1191734
article_processing_charge: No
author:
- first_name: Zhijun
  full_name: Liu, Zhijun
  last_name: Liu
- first_name: 'Nan'
  full_name: Yang, Nan
  last_name: Yang
- first_name: Yanting
  full_name: Lv, Yanting
  last_name: Lv
- first_name: Lixia
  full_name: Pan, Lixia
  last_name: Pan
- first_name: Shuo
  full_name: Lv, Shuo
  last_name: Lv
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: Guodong
  full_name: Wang, Guodong
  last_name: Wang
citation:
  ama: Liu Z, Yang N, Lv Y, et al. The CLE gene family in Populus trichocarpa. <i>Plant
    Signaling &#38; Behavior</i>. 2016;11(6). doi:<a href="https://doi.org/10.1080/15592324.2016.1191734">10.1080/15592324.2016.1191734</a>
  apa: Liu, Z., Yang, N., Lv, Y., Pan, L., Lv, S., Han, H., &#38; Wang, G. (2016).
    The CLE gene family in Populus trichocarpa. <i>Plant Signaling &#38; Behavior</i>.
    Taylor &#38; Francis. <a href="https://doi.org/10.1080/15592324.2016.1191734">https://doi.org/10.1080/15592324.2016.1191734</a>
  chicago: Liu, Zhijun, Nan Yang, Yanting Lv, Lixia Pan, Shuo Lv, Huibin Han, and
    Guodong Wang. “The CLE Gene Family in Populus Trichocarpa.” <i>Plant Signaling
    &#38; Behavior</i>. Taylor &#38; Francis, 2016. <a href="https://doi.org/10.1080/15592324.2016.1191734">https://doi.org/10.1080/15592324.2016.1191734</a>.
  ieee: Z. Liu <i>et al.</i>, “The CLE gene family in Populus trichocarpa,” <i>Plant
    Signaling &#38; Behavior</i>, vol. 11, no. 6. Taylor &#38; Francis, 2016.
  ista: Liu Z, Yang N, Lv Y, Pan L, Lv S, Han H, Wang G. 2016. The CLE gene family
    in Populus trichocarpa. Plant Signaling &#38; Behavior. 11(6), e1191734.
  mla: Liu, Zhijun, et al. “The CLE Gene Family in Populus Trichocarpa.” <i>Plant
    Signaling &#38; Behavior</i>, vol. 11, no. 6, e1191734, Taylor &#38; Francis,
    2016, doi:<a href="https://doi.org/10.1080/15592324.2016.1191734">10.1080/15592324.2016.1191734</a>.
  short: Z. Liu, N. Yang, Y. Lv, L. Pan, S. Lv, H. Han, G. Wang, Plant Signaling &#38;
    Behavior 11 (2016).
date_created: 2018-12-11T11:46:53Z
date_published: 2016-06-02T00:00:00Z
date_updated: 2025-09-22T14:21:19Z
day: '02'
department:
- _id: JiFr
doi: 10.1080/15592324.2016.1191734
external_id:
  isi:
  - '000378740600025'
intvolume: '        11'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4973754/
month: '06'
oa: 1
oa_version: Submitted Version
publication: Plant Signaling & Behavior
publication_status: published
publisher: Taylor & Francis
publist_id: '7308'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The CLE gene family in Populus trichocarpa
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 11
year: '2016'
...
---
_id: '5445'
abstract:
- lang: eng
  text: 'We consider the quantitative analysis problem for interprocedural control-flow
    graphs (ICFGs). The input consists of an ICFG, a positive weight function that
    assigns every transition a positive integer-valued number, and a labelling of
    the transitions (events) as good, bad, and neutral events. The weight function
    assigns to each transition a numerical value that represents ameasure of how good
    or bad an event is. The quantitative analysis problem asks whether there is a
    run of the ICFG where the ratio of the sum of the numerical weights of good events
    versus the sum of weights of bad events in the long-run is at least a given threshold
    (or equivalently, to compute the maximal ratio among all valid paths in the ICFG).
    The quantitative analysis problem for ICFGs can be solved in polynomial time,
    and we present an efficient and practical algorithm for the problem. We show that
    several problems relevant for static program analysis, such as estimating the
    worst-case execution time of a program or the average energy consumption of a
    mobile application, can be modeled in our framework. We have implemented our algorithm
    as a tool in the Java Soot framework. We demonstrate the effectiveness of our
    approach with two case studies. First, we show that our framework provides a sound
    approach (no false positives) for the analysis of inefficiently-used containers.
    Second, we show that our approach can also be used for static profiling of programs
    which reasons about methods that are frequently invoked. Our experimental results
    show that our tool scales to relatively large benchmarks, and discovers relevant
    and useful information that can be used to optimize performance of the programs. '
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Yaron
  full_name: Velner, Yaron
  last_name: Velner
citation:
  ama: Chatterjee K, Pavlogiannis A, Velner Y. <i>Quantitative Interprocedural Analysis</i>.
    IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">10.15479/AT:IST-2016-523-v1-1</a>
  apa: Chatterjee, K., Pavlogiannis, A., &#38; Velner, Y. (2016). <i>Quantitative
    interprocedural analysis</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">https://doi.org/10.15479/AT:IST-2016-523-v1-1</a>
  chicago: Chatterjee, Krishnendu, Andreas Pavlogiannis, and Yaron Velner. <i>Quantitative
    Interprocedural Analysis</i>. IST Austria, 2016. <a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">https://doi.org/10.15479/AT:IST-2016-523-v1-1</a>.
  ieee: K. Chatterjee, A. Pavlogiannis, and Y. Velner, <i>Quantitative interprocedural
    analysis</i>. IST Austria, 2016.
  ista: Chatterjee K, Pavlogiannis A, Velner Y. 2016. Quantitative interprocedural
    analysis, IST Austria, 33p.
  mla: Chatterjee, Krishnendu, et al. <i>Quantitative Interprocedural Analysis</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">10.15479/AT:IST-2016-523-v1-1</a>.
  short: K. Chatterjee, A. Pavlogiannis, Y. Velner, Quantitative Interprocedural Analysis,
    IST Austria, 2016.
date_created: 2018-12-12T11:39:22Z
date_published: 2016-03-31T00:00:00Z
date_updated: 2025-04-15T08:11:41Z
day: '31'
ddc:
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2016-523-v1-1
file:
- access_level: open_access
  checksum: cef516fa091925b5868813e355268fb4
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:52Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '5513'
  file_name: IST-2016-523-v1+1_main.pdf
  file_size: 1012204
  relation: main_file
file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '33'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '523'
related_material:
  record:
  - id: '1604'
    relation: later_version
    status: public
status: public
title: Quantitative interprocedural analysis
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5449'
abstract:
- lang: eng
  text: "The fixation probability is the probability that a new mutant introduced
    in a homogeneous population eventually takes over the entire population.\r\nThe
    fixation probability is a fundamental quantity of natural selection, and known
    to depend on the population structure.\r\nAmplifiers of natural selection are
    population structures which increase the fixation probability of advantageous
    mutants, as compared to the baseline case of well-mixed populations. In this work
    we focus on symmetric population structures represented as undirected graphs.
    In the regime of undirected graphs, the strongest amplifier known has been the
    Star graph, and the existence of undirected graphs with stronger amplification
    properties has remained open for over a decade.\r\nIn this work we present the
    Comet and Comet-swarm families of undirected graphs. We show that for a range
    of fitness values of the mutants, the Comet and Comet-swarm graphs have fixation
    probability strictly larger than the fixation probability of the Star graph, for
    fixed population size and at the limit of large populations, respectively."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: 'Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Amplification on Undirected
    Population Structures: Comets Beat Stars</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">10.15479/AT:IST-2016-648-v1-1</a>'
  apa: 'Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Amplification
    on undirected population structures: Comets beat stars</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">https://doi.org/10.15479/AT:IST-2016-648-v1-1</a>'
  chicago: 'Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Amplification on Undirected Population Structures: Comets Beat Stars</i>.
    IST Austria, 2016. <a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">https://doi.org/10.15479/AT:IST-2016-648-v1-1</a>.'
  ieee: 'A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Amplification
    on undirected population structures: Comets beat stars</i>. IST Austria, 2016.'
  ista: 'Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Amplification on
    undirected population structures: Comets beat stars, IST Austria, 22p.'
  mla: 'Pavlogiannis, Andreas, et al. <i>Amplification on Undirected Population Structures:
    Comets Beat Stars</i>. IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">10.15479/AT:IST-2016-648-v1-1</a>.'
  short: 'A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Amplification on Undirected
    Population Structures: Comets Beat Stars, IST Austria, 2016.'
date_created: 2018-12-12T11:39:24Z
date_published: 2016-11-09T00:00:00Z
date_updated: 2025-09-18T09:50:09Z
day: '09'
ddc:
- '519'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2016-648-v1-1
file:
- access_level: open_access
  checksum: 8345a8c1e7d7f0cd92516d182b7fc59e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:07Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '5529'
  file_name: IST-2016-648-v1+1_tr.pdf
  file_size: 1264221
  relation: main_file
file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Updated Version
page: '22'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '648'
related_material:
  record:
  - id: '512'
    relation: later_version
    status: public
status: public
title: 'Amplification on undirected population structures: Comets beat stars'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5451'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Strong Amplifiers of Natural
    Selection</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">10.15479/AT:IST-2016-728-v1-1</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Strong
    amplifiers of natural selection</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">https://doi.org/10.15479/AT:IST-2016-728-v1-1</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Strong Amplifiers of Natural Selection</i>. IST Austria, 2016. <a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">https://doi.org/10.15479/AT:IST-2016-728-v1-1</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Strong amplifiers
    of natural selection</i>. IST Austria, 2016.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Strong amplifiers
    of natural selection, IST Austria, 34p.
  mla: Pavlogiannis, Andreas, et al. <i>Strong Amplifiers of Natural Selection</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">10.15479/AT:IST-2016-728-v1-1</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Strong Amplifiers of
    Natural Selection, IST Austria, 2016.
date_created: 2018-12-12T11:39:24Z
date_published: 2016-12-30T00:00:00Z
date_updated: 2023-02-23T12:27:05Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2016-728-v1-1
file:
- access_level: open_access
  checksum: 7b8bb17c322c0556acba6ac169fa71c1
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:04Z
  date_updated: 2020-07-14T12:46:59Z
  file_id: '5465'
  file_name: IST-2016-728-v1+1_main.pdf
  file_size: 1014732
  relation: main_file
file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '34'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '728'
status: public
title: Strong amplifiers of natural selection
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5452'
alternative_title:
- IST Austria Technical Report
article_processing_charge: No
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Arbitrarily Strong Amplifiers
    of Natural Selection</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">10.15479/AT:IST-2017-728-v2-1</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Arbitrarily
    strong amplifiers of natural selection</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">https://doi.org/10.15479/AT:IST-2017-728-v2-1</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria,
    2016. <a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">https://doi.org/10.15479/AT:IST-2017-728-v2-1</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Arbitrarily strong
    amplifiers of natural selection</i>. IST Austria, 2016.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Arbitrarily strong
    amplifiers of natural selection, IST Austria, 32p.
  mla: Pavlogiannis, Andreas, et al. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">10.15479/AT:IST-2017-728-v2-1</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Arbitrarily Strong
    Amplifiers of Natural Selection, IST Austria, 2016.
date_created: 2018-12-12T11:39:25Z
date_published: 2016-12-30T00:00:00Z
date_updated: 2025-04-15T07:55:39Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2017-728-v2-1
ec_funded: 1
file:
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  checksum: 58e895f26c82f560c0f0989bf8b08599
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:52:59Z
  date_updated: 2020-07-14T12:46:59Z
  file_id: '5460'
  file_name: IST-2017-728-v2+1_main.pdf
  file_size: 811558
  relation: main_file
file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '32'
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '750'
related_material:
  record:
  - id: '5453'
    relation: later_version
    status: public
  - id: '5559'
    relation: popular_science
    status: public
status: public
title: Arbitrarily strong amplifiers of natural selection
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5453'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Arbitrarily Strong Amplifiers
    of Natural Selection</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">10.15479/AT:IST-2017-749-v3-1</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Arbitrarily
    strong amplifiers of natural selection</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">https://doi.org/10.15479/AT:IST-2017-749-v3-1</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria,
    2016. <a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">https://doi.org/10.15479/AT:IST-2017-749-v3-1</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Arbitrarily strong
    amplifiers of natural selection</i>. IST Austria, 2016.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Arbitrarily strong
    amplifiers of natural selection, IST Austria, 34p.
  mla: Pavlogiannis, Andreas, et al. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">10.15479/AT:IST-2017-749-v3-1</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Arbitrarily Strong
    Amplifiers of Natural Selection, IST Austria, 2016.
date_created: 2018-12-12T11:39:25Z
date_published: 2016-12-30T00:00:00Z
date_updated: 2025-04-15T07:55:37Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2017-749-v3-1
file:
- access_level: open_access
  checksum: 83b0313dab3bff4bdb6ac38695026fda
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  creator: system
  date_created: 2018-12-12T11:53:13Z
  date_updated: 2020-07-14T12:46:59Z
  file_id: '5474'
  file_name: IST-2017-749-v3+1_main.pdf
  file_size: 1015647
  relation: main_file
file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '34'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '755'
related_material:
  record:
  - id: '5452'
    relation: earlier_version
    status: public
status: public
title: Arbitrarily strong amplifiers of natural selection
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5550'
abstract:
- lang: eng
  text: "We collected flower colour information on species in the tribe Antirrhineae
    from taxonomic literature. We also retreived molecular data from GenBank for as
    many of these species as possible to estimate phylogenetic relationships among
    these taxa. We then used the R package 'diversitree' to examine patterns of evolutionary
    transitions between anthocyanin and yellow pigmentation across the phylogeny.\r\n\r\nFor
    full details of the methods see:\r\nEllis TJ and Field DL \"Repeated gains in
    yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae”,
    Annals of Botany (in press)"
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Ellis, Thomas
  id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
  last_name: Ellis
  orcid: 0000-0002-8511-0254
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
citation:
  ama: Ellis T, Field D. Flower colour data and phylogeny (NEXUS) files. 2016. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:34">10.15479/AT:ISTA:34</a>
  apa: Ellis, T., &#38; Field, D. (2016). Flower colour data and phylogeny (NEXUS)
    files. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:34">https://doi.org/10.15479/AT:ISTA:34</a>
  chicago: Ellis, Thomas, and David Field. “Flower Colour Data and Phylogeny (NEXUS)
    Files.” Institute of Science and Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:34">https://doi.org/10.15479/AT:ISTA:34</a>.
  ieee: T. Ellis and D. Field, “Flower colour data and phylogeny (NEXUS) files.” Institute
    of Science and Technology Austria, 2016.
  ista: Ellis T, Field D. 2016. Flower colour data and phylogeny (NEXUS) files, Institute
    of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:34">10.15479/AT:ISTA:34</a>.
  mla: Ellis, Thomas, and David Field. <i>Flower Colour Data and Phylogeny (NEXUS)
    Files</i>. Institute of Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:34">10.15479/AT:ISTA:34</a>.
  short: T. Ellis, D. Field, (2016).
datarep_id: '34'
date_created: 2018-12-12T12:31:29Z
date_published: 2016-02-19T00:00:00Z
date_updated: 2025-09-22T07:32:43Z
day: '19'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:34
file:
- access_level: open_access
  checksum: 950f85b80427d357bfeff09608ba02e9
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:02:27Z
  date_updated: 2020-07-14T12:47:00Z
  file_id: '5594'
  file_name: IST-2016-34-v1+1_tellis_flower_colour_data.zip
  file_size: 4468543
  relation: main_file
file_date_updated: 2020-07-14T12:47:00Z
has_accepted_license: '1'
license: https://creativecommons.org/publicdomain/zero/1.0/
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
publist_id: '5828'
related_material:
  record:
  - id: '1382'
    relation: research_paper
    status: public
status: public
title: Flower colour data and phylogeny (NEXUS) files
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5555'
abstract:
- lang: eng
  text: This FIJI script calculates the population average of the migration speed
    as a function of time of all cells from wide field microscopy movies.
article_processing_charge: No
author:
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
citation:
  ama: Hauschild R. Fiji script to determine average speed and direction of migration
    of cells. 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>
  apa: Hauschild, R. (2016). Fiji script to determine average speed and direction
    of migration of cells. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:44">https://doi.org/10.15479/AT:ISTA:44</a>
  chicago: Hauschild, Robert. “Fiji Script to Determine Average Speed and Direction
    of Migration of Cells.” Institute of Science and Technology Austria, 2016. <a
    href="https://doi.org/10.15479/AT:ISTA:44">https://doi.org/10.15479/AT:ISTA:44</a>.
  ieee: R. Hauschild, “Fiji script to determine average speed and direction of migration
    of cells.” Institute of Science and Technology Austria, 2016.
  ista: Hauschild R. 2016. Fiji script to determine average speed and direction of
    migration of cells, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>.
  mla: Hauschild, Robert. <i>Fiji Script to Determine Average Speed and Direction
    of Migration of Cells</i>. Institute of Science and Technology Austria, 2016,
    doi:<a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>.
  short: R. Hauschild, (2016).
datarep_id: '44'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-07-08T00:00:00Z
date_updated: 2024-02-21T13:50:06Z
day: '08'
ddc:
- '570'
department:
- _id: Bio
doi: 10.15479/AT:ISTA:44
file:
- access_level: open_access
  checksum: 9f96cddbcd4ed689f48712ffe234d5e5
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:03:03Z
  date_updated: 2020-07-14T12:47:02Z
  file_id: '5621'
  file_name: IST-2016-44-v1+1_migrationAnalyzer.zip
  file_size: 20692
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
has_accepted_license: '1'
keyword:
- cell migration
- wide field microscopy
- FIJI
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Fiji script to determine average speed and direction of migration of cells
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5556'
abstract:
- lang: eng
  text: "MATLAB code and processed datasets available for reproducing the results
    in: \r\nLukačišin, M.*, Landon, M.*, Jajoo, R*. (2016) Sequence-Specific Thermodynamic
    Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking
    in Yeast.\r\n*equal contributions"
article_processing_charge: No
author:
- first_name: Martin
  full_name: Lukacisin, Martin
  id: 298FFE8C-F248-11E8-B48F-1D18A9856A87
  last_name: Lukacisin
  orcid: 0000-0001-6549-4177
- first_name: Matthieu
  full_name: Landon, Matthieu
  last_name: Landon
- first_name: Rishi
  full_name: Jajoo, Rishi
  last_name: Jajoo
citation:
  ama: Lukacisin M, Landon M, Jajoo R. MATLAB analysis code for “Sequence-Specific
    Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing
    and Backtracking in Yeast.” 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:45">10.15479/AT:ISTA:45</a>
  apa: Lukacisin, M., Landon, M., &#38; Jajoo, R. (2016). MATLAB analysis code for
    “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional
    Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:45">https://doi.org/10.15479/AT:ISTA:45</a>
  chicago: Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “MATLAB Analysis Code
    for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both
    Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and
    Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:45">https://doi.org/10.15479/AT:ISTA:45</a>.
  ieee: M. Lukacisin, M. Landon, and R. Jajoo, “MATLAB analysis code for ‘Sequence-Specific
    Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing
    and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016.
  ista: Lukacisin M, Landon M, Jajoo R. 2016. MATLAB analysis code for ‘Sequence-Specific
    Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing
    and Backtracking in Yeast’, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:45">10.15479/AT:ISTA:45</a>.
  mla: Lukacisin, Martin, et al. <i>MATLAB Analysis Code for “Sequence-Specific Thermodynamic
    Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking
    in Yeast.”</i> Institute of Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:45">10.15479/AT:ISTA:45</a>.
  short: M. Lukacisin, M. Landon, R. Jajoo, (2016).
datarep_id: '45'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-08-25T00:00:00Z
date_updated: 2025-07-10T11:49:51Z
day: '25'
ddc:
- '571'
department:
- _id: ToBo
doi: 10.15479/AT:ISTA:45
file:
- access_level: open_access
  checksum: ee697f2b1ade4dc14d6ac0334dd832ab
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:02:58Z
  date_updated: 2020-07-14T12:47:02Z
  file_id: '5616'
  file_name: IST-2016-45-v1+1_PaperCode.zip
  file_size: 296722548
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
has_accepted_license: '1'
keyword:
- transcription
- pausing
- backtracking
- polymerase
- RNA
- NET-seq
- nucleosome
- basepairing
license: https://creativecommons.org/licenses/by-sa/4.0/
month: '08'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '8431'
    relation: used_in_publication
    status: deleted
  - id: '1029'
    relation: research_paper
    status: public
status: public
title: MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic
  Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
tmp:
  image: /images/cc_by_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode
  name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC
    BY-SA 4.0)
  short: CC BY-SA (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5557'
abstract:
- lang: eng
  text: "Small synthetic discrete tomography problems.\r\nSizes are 32x32, 64z64 and
    256x256.\r\nProjection angles are 2, 4, and 6.\r\nNumber of labels are 3 and 5."
article_processing_charge: No
author:
- first_name: Paul
  full_name: Swoboda, Paul
  id: 446560C6-F248-11E8-B48F-1D18A9856A87
  last_name: Swoboda
citation:
  ama: Swoboda P. Synthetic discrete tomography problems. 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:46">10.15479/AT:ISTA:46</a>
  apa: Swoboda, P. (2016). Synthetic discrete tomography problems. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:46">https://doi.org/10.15479/AT:ISTA:46</a>
  chicago: Swoboda, Paul. “Synthetic Discrete Tomography Problems.” Institute of Science
    and Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:46">https://doi.org/10.15479/AT:ISTA:46</a>.
  ieee: P. Swoboda, “Synthetic discrete tomography problems.” Institute of Science
    and Technology Austria, 2016.
  ista: Swoboda P. 2016. Synthetic discrete tomography problems, Institute of Science
    and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:46">10.15479/AT:ISTA:46</a>.
  mla: Swoboda, Paul. <i>Synthetic Discrete Tomography Problems</i>. Institute of
    Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:46">10.15479/AT:ISTA:46</a>.
  short: P. Swoboda, (2016).
contributor:
- contributor_type: data_collector
  first_name: Jan
  last_name: Kuske
datarep_id: '46'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-09-20T00:00:00Z
date_updated: 2024-02-21T13:50:21Z
day: '20'
ddc:
- '006'
department:
- _id: VlKo
doi: 10.15479/AT:ISTA:46
file:
- access_level: open_access
  checksum: aa5a16a0dc888da7186fb8fc45e88439
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:05:19Z
  date_updated: 2020-07-14T12:47:02Z
  file_id: '5645'
  file_name: IST-2016-46-v1+1_discrete_tomography_synthetic.zip
  file_size: 36058401
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
has_accepted_license: '1'
keyword:
- discrete tomography
month: '09'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Synthetic discrete tomography problems
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5805'
abstract:
- lang: eng
  text: Discretization of sphere in the integer space follows a particular discretization
    scheme, which, in principle, conforms to some topological model. This eventually
    gives rise to interesting topological properties of a discrete spherical surface,
    which need to be investigated for its analytical characterization. This paper
    presents some novel results on the local topological properties of the naive model
    of discrete sphere. They follow from the bijection of each quadraginta octant
    of naive sphere with its projection map called f -map on the corresponding functional
    plane and from the characterization of certain jumps in the f-map. As an application,
    we have shown how these properties can be used in designing an efficient reconstruction
    algorithm for a naive spherical surface from an input voxel set when it is sparse
    or noisy.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Nabhasmita
  full_name: Sen, Nabhasmita
  last_name: Sen
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Partha
  full_name: Bhowmick, Partha
  last_name: Bhowmick
citation:
  ama: 'Sen N, Biswas R, Bhowmick P. On some local topological properties of naive
    discrete sphere. In: <i>Computational Topology in Image Context</i>. Vol 9667.
    Cham: Springer Nature; 2016:253-264. doi:<a href="https://doi.org/10.1007/978-3-319-39441-1_23">10.1007/978-3-319-39441-1_23</a>'
  apa: 'Sen, N., Biswas, R., &#38; Bhowmick, P. (2016). On some local topological
    properties of naive discrete sphere. In <i>Computational Topology in Image Context</i>
    (Vol. 9667, pp. 253–264). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-319-39441-1_23">https://doi.org/10.1007/978-3-319-39441-1_23</a>'
  chicago: 'Sen, Nabhasmita, Ranita Biswas, and Partha Bhowmick. “On Some Local Topological
    Properties of Naive Discrete Sphere.” In <i>Computational Topology in Image Context</i>,
    9667:253–64. Cham: Springer Nature, 2016. <a href="https://doi.org/10.1007/978-3-319-39441-1_23">https://doi.org/10.1007/978-3-319-39441-1_23</a>.'
  ieee: 'N. Sen, R. Biswas, and P. Bhowmick, “On some local topological properties
    of naive discrete sphere,” in <i>Computational Topology in Image Context</i>,
    vol. 9667, Cham: Springer Nature, 2016, pp. 253–264.'
  ista: 'Sen N, Biswas R, Bhowmick P. 2016.On some local topological properties of
    naive discrete sphere. In: Computational Topology in Image Context. LNCS, vol.
    9667, 253–264.'
  mla: Sen, Nabhasmita, et al. “On Some Local Topological Properties of Naive Discrete
    Sphere.” <i>Computational Topology in Image Context</i>, vol. 9667, Springer Nature,
    2016, pp. 253–64, doi:<a href="https://doi.org/10.1007/978-3-319-39441-1_23">10.1007/978-3-319-39441-1_23</a>.
  short: N. Sen, R. Biswas, P. Bhowmick, in:, Computational Topology in Image Context,
    Springer Nature, Cham, 2016, pp. 253–264.
conference:
  end_date: 2016-06-17
  location: Marseille, France
  name: 'CTIC: Computational Topology in Image Context'
  start_date: 2016-06-15
date_created: 2019-01-08T20:44:24Z
date_published: 2016-06-02T00:00:00Z
date_updated: 2022-01-28T08:01:22Z
day: '02'
department:
- _id: HeEd
doi: 10.1007/978-3-319-39441-1_23
extern: '1'
intvolume: '      9667'
language:
- iso: eng
month: '06'
oa_version: None
page: 253-264
place: Cham
publication: Computational Topology in Image Context
publication_identifier:
  eisbn:
  - 978-3-319-39441-1
  eissn:
  - 1611-3349
  isbn:
  - 978-3-319-39440-4
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: On some local topological properties of naive discrete sphere
type: book_chapter
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 9667
year: '2016'
...
---
_id: '5806'
abstract:
- lang: eng
  text: Although the concept of functional plane for naive plane is studied and reported
    in the literature in great detail, no similar study is yet found for naive sphere.
    This article exposes the first study in this line, opening up further prospects
    of analyzing the topological properties of sphere in the discrete space. We show
    that each quadraginta octant Q of a naive sphere forms a bijection with its projected
    pixel set on a unique coordinate plane, which thereby serves as the functional
    plane of Q, and hence gives rise to merely mono-jumps during back projection.
    The other two coordinate planes serve as para-functional and dia-functional planes
    for Q, as the former is ‘mono-jumping’ but not bijective, whereas the latter holds
    neither of the two. Owing to this, the quadraginta octants form symmetry groups
    and subgroups with equivalent jump conditions. We also show a potential application
    in generating a special class of discrete 3D circles based on back projection
    and jump bridging by Steiner voxels. A circle in this class possesses 4-symmetry,
    uniqueness, and bounded distance from the underlying real sphere and real plane.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Partha
  full_name: Bhowmick, Partha
  last_name: Bhowmick
citation:
  ama: 'Biswas R, Bhowmick P. On functionality of quadraginta octants of naive sphere
    with application to circle drawing. In: <i>Discrete Geometry for Computer Imagery</i>.
    Vol 9647. Cham: Springer Nature; 2016:256-267. doi:<a href="https://doi.org/10.1007/978-3-319-32360-2_20">10.1007/978-3-319-32360-2_20</a>'
  apa: 'Biswas, R., &#38; Bhowmick, P. (2016). On functionality of quadraginta octants
    of naive sphere with application to circle drawing. In <i>Discrete Geometry for
    Computer Imagery</i> (Vol. 9647, pp. 256–267). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-319-32360-2_20">https://doi.org/10.1007/978-3-319-32360-2_20</a>'
  chicago: 'Biswas, Ranita, and Partha Bhowmick. “On Functionality of Quadraginta
    Octants of Naive Sphere with Application to Circle Drawing.” In <i>Discrete Geometry
    for Computer Imagery</i>, 9647:256–67. Cham: Springer Nature, 2016. <a href="https://doi.org/10.1007/978-3-319-32360-2_20">https://doi.org/10.1007/978-3-319-32360-2_20</a>.'
  ieee: R. Biswas and P. Bhowmick, “On functionality of quadraginta octants of naive
    sphere with application to circle drawing,” in <i>Discrete Geometry for Computer
    Imagery</i>, Nantes, France, 2016, vol. 9647, pp. 256–267.
  ista: 'Biswas R, Bhowmick P. 2016. On functionality of quadraginta octants of naive
    sphere with application to circle drawing. Discrete Geometry for Computer Imagery.
    DGCI: International Conference on Discrete Geometry for Computer Imagery, LNCS,
    vol. 9647, 256–267.'
  mla: Biswas, Ranita, and Partha Bhowmick. “On Functionality of Quadraginta Octants
    of Naive Sphere with Application to Circle Drawing.” <i>Discrete Geometry for
    Computer Imagery</i>, vol. 9647, Springer Nature, 2016, pp. 256–67, doi:<a href="https://doi.org/10.1007/978-3-319-32360-2_20">10.1007/978-3-319-32360-2_20</a>.
  short: R. Biswas, P. Bhowmick, in:, Discrete Geometry for Computer Imagery, Springer
    Nature, Cham, 2016, pp. 256–267.
conference:
  end_date: 2016-04-20
  location: Nantes, France
  name: 'DGCI: International Conference on Discrete Geometry for Computer Imagery'
  start_date: 2016-04-18
date_created: 2019-01-08T20:44:37Z
date_published: 2016-04-09T00:00:00Z
date_updated: 2022-01-28T08:10:11Z
day: '09'
department:
- _id: HeEd
doi: 10.1007/978-3-319-32360-2_20
extern: '1'
intvolume: '      9647'
language:
- iso: eng
month: '04'
oa_version: None
page: 256-267
place: Cham
publication: Discrete Geometry for Computer Imagery
publication_identifier:
  eisbn:
  - 978-3-319-32360-2
  isbn:
  - 978-3-319-32359-6
  issn:
  - 0302-9743
  - 1611-3349
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: On functionality of quadraginta octants of naive sphere with application to
  circle drawing
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 9647
year: '2016'
...
---
_id: '5809'
abstract:
- lang: eng
  text: A discrete spherical circle is a topologically well-connected 3D circle in
    the integer space, which belongs to a discrete sphere as well as a discrete plane.
    It is one of the most important 3D geometric primitives, but has not possibly
    yet been studied up to its merit. This paper is a maiden exposition of some of
    its elementary properties, which indicates a sense of its profound theoretical
    prospects in the framework of digital geometry. We have shown how different types
    of discretization can lead to forbidden and admissible classes, when one attempts
    to define the discretization of a spherical circle in terms of intersection between
    a discrete sphere and a discrete plane. Several fundamental theoretical results
    have been presented, the algorithm for construction of discrete spherical circles
    has been discussed, and some test results have been furnished to demonstrate its
    practicality and usefulness.
article_processing_charge: No
author:
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Partha
  full_name: Bhowmick, Partha
  last_name: Bhowmick
- first_name: Valentin E.
  full_name: Brimkov, Valentin E.
  last_name: Brimkov
citation:
  ama: 'Biswas R, Bhowmick P, Brimkov VE. On the connectivity and smoothness of discrete
    spherical circles. In: <i>Combinatorial Image Analysis</i>. Vol 9448. Cham: Springer
    Nature; 2016:86-100. doi:<a href="https://doi.org/10.1007/978-3-319-26145-4_7">10.1007/978-3-319-26145-4_7</a>'
  apa: 'Biswas, R., Bhowmick, P., &#38; Brimkov, V. E. (2016). On the connectivity
    and smoothness of discrete spherical circles. In <i>Combinatorial image analysis</i>
    (Vol. 9448, pp. 86–100). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-319-26145-4_7">https://doi.org/10.1007/978-3-319-26145-4_7</a>'
  chicago: 'Biswas, Ranita, Partha Bhowmick, and Valentin E. Brimkov. “On the Connectivity
    and Smoothness of Discrete Spherical Circles.” In <i>Combinatorial Image Analysis</i>,
    9448:86–100. Cham: Springer Nature, 2016. <a href="https://doi.org/10.1007/978-3-319-26145-4_7">https://doi.org/10.1007/978-3-319-26145-4_7</a>.'
  ieee: 'R. Biswas, P. Bhowmick, and V. E. Brimkov, “On the connectivity and smoothness
    of discrete spherical circles,” in <i>Combinatorial image analysis</i>, vol. 9448,
    Cham: Springer Nature, 2016, pp. 86–100.'
  ista: 'Biswas R, Bhowmick P, Brimkov VE. 2016.On the connectivity and smoothness
    of discrete spherical circles. In: Combinatorial image analysis. vol. 9448, 86–100.'
  mla: Biswas, Ranita, et al. “On the Connectivity and Smoothness of Discrete Spherical
    Circles.” <i>Combinatorial Image Analysis</i>, vol. 9448, Springer Nature, 2016,
    pp. 86–100, doi:<a href="https://doi.org/10.1007/978-3-319-26145-4_7">10.1007/978-3-319-26145-4_7</a>.
  short: R. Biswas, P. Bhowmick, V.E. Brimkov, in:, Combinatorial Image Analysis,
    Springer Nature, Cham, 2016, pp. 86–100.
conference:
  end_date: 2015-11-27
  location: Kolkata, India
  name: 'IWCIA: International Workshop on Combinatorial Image Analysis'
  start_date: 2015-11-24
date_created: 2019-01-08T20:45:19Z
date_published: 2016-01-06T00:00:00Z
date_updated: 2022-01-28T08:13:03Z
day: '06'
department:
- _id: HeEd
doi: 10.1007/978-3-319-26145-4_7
extern: '1'
intvolume: '      9448'
language:
- iso: eng
month: '01'
oa_version: None
page: 86-100
place: Cham
publication: Combinatorial image analysis
publication_identifier:
  eisbn:
  - 978-3-319-26145-4
  eissn:
  - 1611-3349
  isbn:
  - 978-3-319-26144-7
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: On the connectivity and smoothness of discrete spherical circles
type: book_chapter
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 9448
year: '2016'
...
---
_id: '9862'
article_processing_charge: No
author:
- first_name: Camille
  full_name: Roux, Camille
  last_name: Roux
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Jonathan
  full_name: Romiguier, Jonathan
  last_name: Romiguier
- first_name: Youann
  full_name: Anciaux, Youann
  last_name: Anciaux
- first_name: Nicolas
  full_name: Galtier, Nicolas
  last_name: Galtier
- first_name: Nicolas
  full_name: Bierne, Nicolas
  last_name: Bierne
citation:
  ama: Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Simulation
    study to test the robustness of ABC in face of recent times of divergence. 2016.
    doi:<a href="https://doi.org/10.1371/journal.pbio.2000234.s016">10.1371/journal.pbio.2000234.s016</a>
  apa: Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &#38; Bierne,
    N. (2016). Simulation study to test the robustness of ABC in face of recent times
    of divergence. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.2000234.s016">https://doi.org/10.1371/journal.pbio.2000234.s016</a>
  chicago: Roux, Camille, Christelle Fraisse, Jonathan Romiguier, Youann Anciaux,
    Nicolas Galtier, and Nicolas Bierne. “Simulation Study to Test the Robustness
    of ABC in Face of Recent Times of Divergence.” Public Library of Science, 2016.
    <a href="https://doi.org/10.1371/journal.pbio.2000234.s016">https://doi.org/10.1371/journal.pbio.2000234.s016</a>.
  ieee: C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, and N. Bierne,
    “Simulation study to test the robustness of ABC in face of recent times of divergence.”
    Public Library of Science, 2016.
  ista: Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. 2016. Simulation
    study to test the robustness of ABC in face of recent times of divergence, Public
    Library of Science, <a href="https://doi.org/10.1371/journal.pbio.2000234.s016">10.1371/journal.pbio.2000234.s016</a>.
  mla: Roux, Camille, et al. <i>Simulation Study to Test the Robustness of ABC in
    Face of Recent Times of Divergence</i>. Public Library of Science, 2016, doi:<a
    href="https://doi.org/10.1371/journal.pbio.2000234.s016">10.1371/journal.pbio.2000234.s016</a>.
  short: C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
date_created: 2021-08-10T08:20:17Z
date_updated: 2025-09-22T09:55:08Z
day: '27'
department:
- _id: BeVi
- _id: NiBa
doi: 10.1371/journal.pbio.2000234.s016
month: '12'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '1158'
    relation: used_in_publication
    status: public
status: public
title: Simulation study to test the robustness of ABC in face of recent times of divergence
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2016'
...
