---
OA_place: publisher
OA_type: hybrid
_id: '21470'
abstract:
- lang: eng
  text: Despite its pivotal role in optical manipulation, high capacity communications,
    and quantum information, a general measure of orbital angular momentum (OAM) in
    structured light remains elusive. In optical fields, where multiple vortices coexist,
    the local nature of vortex OAM and the absence of a common rotation axis make
    the total OAM of the field difficult to quantify. Here, we introduce the R index—a
    metric that captures the intrinsic OAM content of any structured optical field,
    from pure Laguerre–Gaussian modes to arbitrary multi vortex superpositions. Not
    only does this metric quantify the total OAM, it also assesses field purity, providing
    insight into the fidelity and robustness of the OAM generation. By unifying OAM
    characterization into a single figure of merit, the R index enables direct comparison
    across diverse beam profiles and facilitates the identification of optimal configurations
    for both foundational studies and applied technologies.
acknowledgement: This research was funded in whole or in part by the Austrian Science
  Fund (FWF) [10.55776/F1004]. For open access purposes, the author has applied a
  CC BY public copyright license to any author accepted manuscript version arising
  from this submission.
article_number: '015071'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Monika
  full_name: Bahl, Monika
  last_name: Bahl
- first_name: Georgios
  full_name: Koutentakis, Georgios
  id: d7b23d3a-9e21-11ec-b482-f76739596b95
  last_name: Koutentakis
- first_name: Mikhail
  full_name: Maslov, Mikhail
  id: 2E65BB0E-F248-11E8-B48F-1D18A9856A87
  last_name: Maslov
  orcid: 0000-0003-4074-2570
- first_name: Tom
  full_name: Jungnickel, Tom
  last_name: Jungnickel
- first_name: Timo
  full_name: Gaßen, Timo
  last_name: Gaßen
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Oliver H.
  full_name: Heckl, Oliver H.
  last_name: Heckl
citation:
  ama: 'Bahl M, Koutentakis G, Maslov M, et al. The R-index: A universal metric for
    evaluating OAM content and mode purity in optical fields. <i>Journal of Physics:
    Photonics</i>. 2026;8(1). doi:<a href="https://doi.org/10.1088/2515-7647/ae3506">10.1088/2515-7647/ae3506</a>'
  apa: 'Bahl, M., Koutentakis, G., Maslov, M., Jungnickel, T., Gaßen, T., Lemeshko,
    M., &#38; Heckl, O. H. (2026). The R-index: A universal metric for evaluating
    OAM content and mode purity in optical fields. <i>Journal of Physics: Photonics</i>.
    IOP Publishing. <a href="https://doi.org/10.1088/2515-7647/ae3506">https://doi.org/10.1088/2515-7647/ae3506</a>'
  chicago: 'Bahl, Monika, Georgios Koutentakis, Mikhail Maslov, Tom Jungnickel, Timo
    Gaßen, Mikhail Lemeshko, and Oliver H. Heckl. “The R-Index: A Universal Metric
    for Evaluating OAM Content and Mode Purity in Optical Fields.” <i>Journal of Physics:
    Photonics</i>. IOP Publishing, 2026. <a href="https://doi.org/10.1088/2515-7647/ae3506">https://doi.org/10.1088/2515-7647/ae3506</a>.'
  ieee: 'M. Bahl <i>et al.</i>, “The R-index: A universal metric for evaluating OAM
    content and mode purity in optical fields,” <i>Journal of Physics: Photonics</i>,
    vol. 8, no. 1. IOP Publishing, 2026.'
  ista: 'Bahl M, Koutentakis G, Maslov M, Jungnickel T, Gaßen T, Lemeshko M, Heckl
    OH. 2026. The R-index: A universal metric for evaluating OAM content and mode
    purity in optical fields. Journal of Physics: Photonics. 8(1), 015071.'
  mla: 'Bahl, Monika, et al. “The R-Index: A Universal Metric for Evaluating OAM Content
    and Mode Purity in Optical Fields.” <i>Journal of Physics: Photonics</i>, vol.
    8, no. 1, 015071, IOP Publishing, 2026, doi:<a href="https://doi.org/10.1088/2515-7647/ae3506">10.1088/2515-7647/ae3506</a>.'
  short: 'M. Bahl, G. Koutentakis, M. Maslov, T. Jungnickel, T. Gaßen, M. Lemeshko,
    O.H. Heckl, Journal of Physics: Photonics 8 (2026).'
corr_author: '1'
date_created: 2026-03-22T23:04:32Z
date_published: 2026-03-10T00:00:00Z
date_updated: 2026-03-23T13:26:26Z
day: '10'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1088/2515-7647/ae3506
external_id:
  arxiv:
  - '2508.12973'
file:
- access_level: open_access
  checksum: 0ec8a2d3f9efa704203a41f068344974
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-23T13:24:01Z
  date_updated: 2026-03-23T13:24:01Z
  file_id: '21476'
  file_name: 2026_JPhysPhotonics_Bahl.pdf
  file_size: 1150404
  relation: main_file
  success: 1
file_date_updated: 2026-03-23T13:24:01Z
has_accepted_license: '1'
intvolume: '         8'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 7c040762-9f16-11ee-852c-dd79eeee4ab3
  grant_number: F100403
  name: Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions
publication: 'Journal of Physics: Photonics'
publication_identifier:
  eissn:
  - 2515-7647
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The R-index: A universal metric for evaluating OAM content and mode purity
  in optical fields'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21471'
acknowledgement: We thank the Barton group at the Institute of Scienceand Technology
  Austria for many fruitful conversationsthat triggered the germination of the ideas
  and questions discussed here. N. H. Barton, P. Surendranadh, A. Pal,Z. Mérai, and
  two anonymous reviewers provided useful comments on the manuscript.
article_number: e70175
article_processing_charge: No
article_type: letter_note
author:
- first_name: Sofia Maria
  full_name: Backlund, Sofia Maria
  id: a19ed178-1337-11ed-9389-c30ab879a82a
  last_name: Backlund
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Rosina Matilde
  full_name: Soler Schaller, Rosina Matilde
  id: 9e668447-8c32-11ed-b0c7-8dc2d7b80803
  last_name: Soler Schaller
citation:
  ama: 'Backlund SM, Stankowski S, Soler Schaller RM. Seeds as space-time travelers:
    How does evolution balance the joint benefits and trade-offs of dormancy and dispersal?
    <i>American Journal of Botany</i>. 2026;113(3). doi:<a href="https://doi.org/10.1002/ajb2.70175">10.1002/ajb2.70175</a>'
  apa: 'Backlund, S. M., Stankowski, S., &#38; Soler Schaller, R. M. (2026). Seeds
    as space-time travelers: How does evolution balance the joint benefits and trade-offs
    of dormancy and dispersal? <i>American Journal of Botany</i>. Wiley. <a href="https://doi.org/10.1002/ajb2.70175">https://doi.org/10.1002/ajb2.70175</a>'
  chicago: 'Backlund, Sofia Maria, Sean Stankowski, and Rosina Matilde Soler Schaller.
    “Seeds as Space-Time Travelers: How Does Evolution Balance the Joint Benefits
    and Trade-Offs of Dormancy and Dispersal?” <i>American Journal of Botany</i>.
    Wiley, 2026. <a href="https://doi.org/10.1002/ajb2.70175">https://doi.org/10.1002/ajb2.70175</a>.'
  ieee: 'S. M. Backlund, S. Stankowski, and R. M. Soler Schaller, “Seeds as space-time
    travelers: How does evolution balance the joint benefits and trade-offs of dormancy
    and dispersal?,” <i>American Journal of Botany</i>, vol. 113, no. 3. Wiley, 2026.'
  ista: 'Backlund SM, Stankowski S, Soler Schaller RM. 2026. Seeds as space-time travelers:
    How does evolution balance the joint benefits and trade-offs of dormancy and dispersal?
    American Journal of Botany. 113(3), e70175.'
  mla: 'Backlund, Sofia Maria, et al. “Seeds as Space-Time Travelers: How Does Evolution
    Balance the Joint Benefits and Trade-Offs of Dormancy and Dispersal?” <i>American
    Journal of Botany</i>, vol. 113, no. 3, e70175, Wiley, 2026, doi:<a href="https://doi.org/10.1002/ajb2.70175">10.1002/ajb2.70175</a>.'
  short: S.M. Backlund, S. Stankowski, R.M. Soler Schaller, American Journal of Botany
    113 (2026).
corr_author: '1'
date_created: 2026-03-22T23:04:33Z
date_published: 2026-03-11T00:00:00Z
date_updated: 2026-03-23T14:47:52Z
day: '11'
ddc:
- '580'
- '570'
department:
- _id: NiBa
- _id: GradSch
doi: 10.1002/ajb2.70175
external_id:
  pmid:
  - '41814642'
file:
- access_level: open_access
  checksum: 6116108a12c4a5cc91fc653d67885309
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-23T14:01:44Z
  date_updated: 2026-03-23T14:01:44Z
  file_id: '21477'
  file_name: 2026_AmericanJourBotany_Backlund.pdf
  file_size: 495080
  relation: main_file
  success: 1
file_date_updated: 2026-03-23T14:01:44Z
has_accepted_license: '1'
intvolume: '       113'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: American Journal of Botany
publication_identifier:
  eissn:
  - 1537-2197
  issn:
  - 0002-9122
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Seeds as space-time travelers: How does evolution balance the joint benefits
  and trade-offs of dormancy and dispersal?'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 113
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21473'
abstract:
- lang: eng
  text: Physical exercise acutely improves hippocampus-dependent memory. Whereas animal
    studies have offered cellular- and synaptic-level accounts of these effects, human
    neuroimaging studies show that exercise improves hippocampal-cortical connectivity
    at the macroscale level. However, the neurophysiological basis of exercise-induced
    effects on hippocampal-cortical circuits remains unknown. Experimental evidence
    supports the idea that hippocampal sharp wave-ripples (SWR) play a critical role
    in learning and memory. Coupling between SWRs in the hippocampus and neocortex
    may reflect modulations in inter-regional connectivity required by mnemonic processes.
    Here, we examine the hypothesis that exercise modulates hippocampal-cortical ripple
    dynamics in the human brain. We performed intracranial recordings in epilepsy
    patients undergoing pre-surgical evaluation, during awake resting state, before
    and after an exercise session. Exercise increased ripple rate in the hippocampus.
    Exercise also enhanced the coupling and phase-synchrony between cortical ripples
    in the limbic and the default mode (DM) cortical networks and hippocampal SWRs.
    Further, a higher heart rate during exercise, reflecting exercise intensity, was
    related to a subsequent increase in resting state ripples across specific cortical
    networks, including the DM network. These results offer the first direct evidence
    that a single exercise session elicits changes in ripple events, a well-established
    neurophysiological marker of mnemonic processing. The characterisation and anatomical
    distribution of the described modulation points to hippocampal ripples as a potential
    mechanism by which exercise elicits its reported short-term effects in cognition.
acknowledgement: We acknowledge the generosity of the patients, who contributed time
  and effort to take part in this study.
article_number: fcag041
article_processing_charge: Yes
article_type: original
author:
- first_name: Araceli R.
  full_name: Cardenas, Araceli R.
  last_name: Cardenas
- first_name: Juan F
  full_name: Ramirez Villegas, Juan F
  id: 44B06F76-F248-11E8-B48F-1D18A9856A87
  last_name: Ramirez Villegas
- first_name: Christopher K.
  full_name: Kovach, Christopher K.
  last_name: Kovach
- first_name: Phillip E.
  full_name: Gander, Phillip E.
  last_name: Gander
- first_name: Rachel C.
  full_name: Cole, Rachel C.
  last_name: Cole
- first_name: Andrew J.
  full_name: Grossbach, Andrew J.
  last_name: Grossbach
- first_name: Hiroto
  full_name: Kawasaki, Hiroto
  last_name: Kawasaki
- first_name: Jeremy D.W.
  full_name: Greenlee, Jeremy D.W.
  last_name: Greenlee
- first_name: Matthew A.
  full_name: Howard, Matthew A.
  last_name: Howard
- first_name: Kirill V.
  full_name: Nourski, Kirill V.
  last_name: Nourski
- first_name: Matthew I.
  full_name: Banks, Matthew I.
  last_name: Banks
- first_name: Michelle W.
  full_name: Voss, Michelle W.
  last_name: Voss
citation:
  ama: Cardenas AR, Ramirez Villegas JF, Kovach CK, et al. Exercise enhances hippocampal-cortical
    ripple interactions in the human brain. <i>Brain Communications</i>. 2026;8(2).
    doi:<a href="https://doi.org/10.1093/braincomms/fcag041">10.1093/braincomms/fcag041</a>
  apa: Cardenas, A. R., Ramirez Villegas, J. F., Kovach, C. K., Gander, P. E., Cole,
    R. C., Grossbach, A. J., … Voss, M. W. (2026). Exercise enhances hippocampal-cortical
    ripple interactions in the human brain. <i>Brain Communications</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/braincomms/fcag041">https://doi.org/10.1093/braincomms/fcag041</a>
  chicago: Cardenas, Araceli R., Juan F Ramirez Villegas, Christopher K. Kovach, Phillip
    E. Gander, Rachel C. Cole, Andrew J. Grossbach, Hiroto Kawasaki, et al. “Exercise
    Enhances Hippocampal-Cortical Ripple Interactions in the Human Brain.” <i>Brain
    Communications</i>. Oxford University Press, 2026. <a href="https://doi.org/10.1093/braincomms/fcag041">https://doi.org/10.1093/braincomms/fcag041</a>.
  ieee: A. R. Cardenas <i>et al.</i>, “Exercise enhances hippocampal-cortical ripple
    interactions in the human brain,” <i>Brain Communications</i>, vol. 8, no. 2.
    Oxford University Press, 2026.
  ista: Cardenas AR, Ramirez Villegas JF, Kovach CK, Gander PE, Cole RC, Grossbach
    AJ, Kawasaki H, Greenlee JDW, Howard MA, Nourski KV, Banks MI, Voss MW. 2026.
    Exercise enhances hippocampal-cortical ripple interactions in the human brain.
    Brain Communications. 8(2), fcag041.
  mla: Cardenas, Araceli R., et al. “Exercise Enhances Hippocampal-Cortical Ripple
    Interactions in the Human Brain.” <i>Brain Communications</i>, vol. 8, no. 2,
    fcag041, Oxford University Press, 2026, doi:<a href="https://doi.org/10.1093/braincomms/fcag041">10.1093/braincomms/fcag041</a>.
  short: A.R. Cardenas, J.F. Ramirez Villegas, C.K. Kovach, P.E. Gander, R.C. Cole,
    A.J. Grossbach, H. Kawasaki, J.D.W. Greenlee, M.A. Howard, K.V. Nourski, M.I.
    Banks, M.W. Voss, Brain Communications 8 (2026).
corr_author: '1'
date_created: 2026-03-22T23:04:34Z
date_published: 2026-03-09T00:00:00Z
date_updated: 2026-03-23T14:30:47Z
day: '09'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1093/braincomms/fcag041
file:
- access_level: open_access
  checksum: b5b45c16defeaf88056fc3b939bd0350
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-23T14:27:39Z
  date_updated: 2026-03-23T14:27:39Z
  file_id: '21478'
  file_name: 2026_BrainCommunications_Cardenas.pdf
  file_size: 33974419
  relation: main_file
  success: 1
file_date_updated: 2026-03-23T14:27:39Z
has_accepted_license: '1'
intvolume: '         8'
issue: '2'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Brain Communications
publication_identifier:
  eissn:
  - 2632-1297
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Exercise enhances hippocampal-cortical ripple interactions in the human brain
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21480'
abstract:
- lang: eng
  text: We present and test a protocol to learn the matrix-product operator (MPO)
    representation of an experimentally prepared quantum state. The protocol takes
    as input classical shadows corresponding to local randomized measurements, and
    outputs the tensors of an MPO maximizing a suitably defined fidelity with the
    experimental state. The tensor optimization is carried out sequentially, similarly
    to the well-known density matrix renormalization group algorithm. Our approach
    is provably efficient under certain technical conditions expected to be met in
    short-range correlated states and in typical noisy experimental settings. Under
    the same conditions, we also provide an efficient scheme to estimate fidelities
    between the learned and the experimental states. We experimentally demonstrate
    our protocol by learning entangled quantum states of up to N = 96 qubits in a
    superconducting quantum processor. Our method upgrades classical shadows to large-scale
    quantum computation and simulation experiments.
acknowledgement: "We acknowledge insightful discussions with Antoine Browaeys, Mari
  Carmen Bañuls, Soonwon Choi, Thierry Lahaye, Daniel Stilck-França, Georgios Styliaris,
  and Xavier Waintal. The experimental data have been collected using the Qiskit library
  [103], and have been postprocessed using the RandomMeas [104] and ITensor [105]
  libraries. The work of M. V. and B. V. was funded by the French National Research
  Agency via the JCJC project QRand (No. ANR-20-CE47-0005), and via the research programs
  Plan France 2030 EPIQ (No. ANR-22-\r\nPETQ-0007), QUBITAF (No. ANR-22-PETQ-0004),
  and HQI (No. ANR-22-PNCQ-0002). We acknowledge the use of IBM Quantum Credits for
  this work. M. L. acknowledges support by the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) under Germany’s Excellence Strategy—EXC-2111–390814868.
  The work of C. L. was funded by the French National Research Agency via the PRC
  project ESQuisses (No. ANR-20-CE47-0014-01). J. I. C.\r\nacknowledges funding from
  the Federal Ministry of Education and Research Germany (BMBF) via the project FermiQP
  (No. 13N15889). Work at MPQ is part of the Munich Quantum Valley, which is supported
  by the Bavarian state government with funds from the Hightech Agenda\r\nBayern Plus.
  P. Z. acknowledges support by the European Union’s Horizon Europe research and innovation
  program under Grant Agreement No. 101113690 (PASQANS2). The work of L. P. was funded
  by the European Union (ERC, QUANTHEM, No. 101114881). We acknowledge support\r\nby
  the Erwin Schrödinger International Institute for Mathematics and Physics (ESI)."
article_number: '090801'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Matteo
  full_name: Votto, Matteo
  last_name: Votto
- first_name: Marko
  full_name: Ljubotina, Marko
  id: F75EE9BE-5C90-11EA-905D-16643DDC885E
  last_name: Ljubotina
  orcid: 0000-0003-0038-7068
- first_name: Cécilia
  full_name: Lancien, Cécilia
  last_name: Lancien
- first_name: J. Ignacio
  full_name: Cirac, J. Ignacio
  last_name: Cirac
- first_name: Peter
  full_name: Zoller, Peter
  last_name: Zoller
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Lorenzo
  full_name: Piroli, Lorenzo
  last_name: Piroli
- first_name: Benoît
  full_name: Vermersch, Benoît
  last_name: Vermersch
citation:
  ama: Votto M, Ljubotina M, Lancien C, et al. Learning mixed quantum states in large-scale
    experiments. <i>Physical Review Letters</i>. 2026;136(9). doi:<a href="https://doi.org/10.1103/rbg2-f61m">10.1103/rbg2-f61m</a>
  apa: Votto, M., Ljubotina, M., Lancien, C., Cirac, J. I., Zoller, P., Serbyn, M.,
    … Vermersch, B. (2026). Learning mixed quantum states in large-scale experiments.
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/rbg2-f61m">https://doi.org/10.1103/rbg2-f61m</a>
  chicago: Votto, Matteo, Marko Ljubotina, Cécilia Lancien, J. Ignacio Cirac, Peter
    Zoller, Maksym Serbyn, Lorenzo Piroli, and Benoît Vermersch. “Learning Mixed Quantum
    States in Large-Scale Experiments.” <i>Physical Review Letters</i>. American Physical
    Society, 2026. <a href="https://doi.org/10.1103/rbg2-f61m">https://doi.org/10.1103/rbg2-f61m</a>.
  ieee: M. Votto <i>et al.</i>, “Learning mixed quantum states in large-scale experiments,”
    <i>Physical Review Letters</i>, vol. 136, no. 9. American Physical Society, 2026.
  ista: Votto M, Ljubotina M, Lancien C, Cirac JI, Zoller P, Serbyn M, Piroli L, Vermersch
    B. 2026. Learning mixed quantum states in large-scale experiments. Physical Review
    Letters. 136(9), 090801.
  mla: Votto, Matteo, et al. “Learning Mixed Quantum States in Large-Scale Experiments.”
    <i>Physical Review Letters</i>, vol. 136, no. 9, 090801, American Physical Society,
    2026, doi:<a href="https://doi.org/10.1103/rbg2-f61m">10.1103/rbg2-f61m</a>.
  short: M. Votto, M. Ljubotina, C. Lancien, J.I. Cirac, P. Zoller, M. Serbyn, L.
    Piroli, B. Vermersch, Physical Review Letters 136 (2026).
date_created: 2026-03-23T14:56:32Z
date_published: 2026-03-04T00:00:00Z
date_updated: 2026-03-23T15:39:34Z
day: '04'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/rbg2-f61m
external_id:
  arxiv:
  - '2507.12550'
file:
- access_level: open_access
  checksum: 12b16ce2d49c62b2909da95121bfaadb
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-23T15:35:27Z
  date_updated: 2026-03-23T15:35:27Z
  file_id: '21491'
  file_name: 2026_PhysicalReviewLetters_Votto.pdf
  file_size: 500041
  relation: main_file
  success: 1
file_date_updated: 2026-03-23T15:35:27Z
has_accepted_license: '1'
intvolume: '       136'
issue: '9'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Learning mixed quantum states in large-scale experiments
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '21481'
abstract:
- lang: eng
  text: 'The Hα emission line in galaxies is a powerful tracer of their recent star
    formation activity. With the advent of JWST, we are now able to routinely observe
    Hα in galaxies at high redshift (z ≳ 3) and thus measure their star formation
    rates (SFRs). However, using classical SFR(Hα) calibrations to derive the SFRs
    leads to biased results because high-redshift galaxies are commonly characterized
    by low metallicities and bursty star formation histories, affecting the conversion
    factor between the Hα luminosity (LHα) and the SFR. We developed a set of new
    SFR(Hα) calibrations that allowed us to predict the SFRs of Hα-emitters at z ≳ 3
    with very little error. We used the SPHINX cosmological simulations to select
    a sample of star-forming galaxies representative of the Hα-emitter population
    observed with JWST. We then derived linear corrections to the classical SFR(Hα)
    calibrations that took variations in the physical properties (e.g., stellar metallicities)
    among individual galaxies into account. We obtained two new SFR(Hα) calibrations
    that compared to the classical calibrations reduce the root mean squared error
    (RMSE) in the predicted SFRs by ΔRMSE ≈ 0.04 dex and ΔRMSE ≈ 0.06 dex, respectively.
    Using the recent JWST NIRCam/grism observations of Hα-emitters at z ∼ 6, we show
    that the new calibrations affect the high-redshift galaxy population statistics:
    (i) the estimated cosmic SFR density decreases by ΔρSFR ≈ 12%, and (ii) the observed
    slope of the star formation main sequence increases by Δ∂logSFR/∂logM★ = 0.08 ± 0.02.'
acknowledgement: "We thank the anonymous referee for the insightful comments that
  helped improve the manuscript. We also thank Thibault Garel, Pascal Oesch, Irene
  Shivaei, Charlotte Simmonds, Andrew Hopkins, Daniel Schaerer, and Rashmi Gottumukkala
  for useful comments and productive discussions. We gratefully acknowledge support
  from the CBPsmn (PSMN, Pôle Scientifique de Modélisation Numérique) of the ENS de
  Lyon for the computing resources.\r\nFunded by the European Union (ERC, AGENTS,
  101076224). Views and opinions expressed are however those of the author(s) only
  and do not necessarily reflect those of the European Union or the European Research
  Council. Neither the European Union nor the granting authority can be held responsible
  for them. This work made extensive use of several open-source software packages,
  and we gratefully acknowledge the efforts of their authors: numpy (Harris et al.
  2020), astropy (Astropy Collaboration 2022), matplotlib (Hunter 2007), ipython (Perez
  & Granger 2007), and scikit-learn (Pedregosa et al. 2011)."
article_number: A184
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ivan
  full_name: Kramarenko, Ivan
  id: 9a9394cb-3200-11ee-973b-f5ba2a8b16e4
  last_name: Kramarenko
  orcid: 0000-0001-5346-6048
- first_name: J.
  full_name: Rosdahl, J.
  last_name: Rosdahl
- first_name: J.
  full_name: Blaizot, J.
  last_name: Blaizot
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: H.
  full_name: Katz, H.
  last_name: Katz
- first_name: Claudia
  full_name: Di Cesare, Claudia
  id: 2d002343-372f-11ef-98ec-a164d20427cb
  last_name: Di Cesare
citation:
  ama: Kramarenko I, Rosdahl J, Blaizot J, Matthee JJ, Katz H, Di Cesare C. H α as
    a tracer of star formation in the SPHINX cosmological simulations. <i>Astronomy
    &#38; Astrophysics</i>. 2026;707. doi:<a href="https://doi.org/10.1051/0004-6361/202557114">10.1051/0004-6361/202557114</a>
  apa: Kramarenko, I., Rosdahl, J., Blaizot, J., Matthee, J. J., Katz, H., &#38; Di
    Cesare, C. (2026). H α as a tracer of star formation in the SPHINX cosmological
    simulations. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202557114">https://doi.org/10.1051/0004-6361/202557114</a>
  chicago: Kramarenko, Ivan, J. Rosdahl, J. Blaizot, Jorryt J Matthee, H. Katz, and
    Claudia Di Cesare. “H α as a Tracer of Star Formation in the SPHINX Cosmological
    Simulations.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2026. <a href="https://doi.org/10.1051/0004-6361/202557114">https://doi.org/10.1051/0004-6361/202557114</a>.
  ieee: I. Kramarenko, J. Rosdahl, J. Blaizot, J. J. Matthee, H. Katz, and C. Di Cesare,
    “H α as a tracer of star formation in the SPHINX cosmological simulations,” <i>Astronomy
    &#38; Astrophysics</i>, vol. 707. EDP Sciences, 2026.
  ista: Kramarenko I, Rosdahl J, Blaizot J, Matthee JJ, Katz H, Di Cesare C. 2026.
    H α as a tracer of star formation in the SPHINX cosmological simulations. Astronomy
    &#38; Astrophysics. 707, A184.
  mla: Kramarenko, Ivan, et al. “H α as a Tracer of Star Formation in the SPHINX Cosmological
    Simulations.” <i>Astronomy &#38; Astrophysics</i>, vol. 707, A184, EDP Sciences,
    2026, doi:<a href="https://doi.org/10.1051/0004-6361/202557114">10.1051/0004-6361/202557114</a>.
  short: I. Kramarenko, J. Rosdahl, J. Blaizot, J.J. Matthee, H. Katz, C. Di Cesare,
    Astronomy &#38; Astrophysics 707 (2026).
corr_author: '1'
date_created: 2026-03-23T14:58:03Z
date_published: 2026-03-05T00:00:00Z
date_updated: 2026-03-23T15:46:31Z
day: '05'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1051/0004-6361/202557114
external_id:
  arxiv:
  - '2509.05403'
file:
- access_level: open_access
  checksum: 7429076b381dd498084f40ffd199e714
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-23T15:44:09Z
  date_updated: 2026-03-23T15:44:09Z
  file_id: '21492'
  file_name: 2026_AstronomyAstrophysics_Kramarenko.pdf
  file_size: 904565
  relation: main_file
  success: 1
file_date_updated: 2026-03-23T15:44:09Z
has_accepted_license: '1'
intvolume: '       707'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: bd9b2118-d553-11ed-ba76-db24564edfea
  grant_number: '101076224'
  name: Young galaxies as tracers and agents of cosmic reionization
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
status: public
title: H α as a tracer of star formation in the SPHINX cosmological simulations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 707
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21482'
abstract:
- lang: eng
  text: Controlling the size and shape of assembled structures is a fundamental challenge
    in self-assembly and is highly relevant in material design and biology. Here,
    we show that specific but promiscuous short-range binding interactions make it
    possible to economically assemble linear filaments of user-defined length. Our
    approach leads to independent control over the mean and width of the filament
    size distribution and allows us to smoothly explore design trade-offs between
    assembly quality (spread in size) and cost (number of particle species). We employ
    a simple hierarchical assembly protocol to minimize assembly times and show that
    multiple stages of hierarchy make it possible to extend our approach to the assembly
    of higher-dimensional structures. Our work provides a conceptually simple solution
    to size control that is applicable to a broad range of systems, from DNA nanoparticles
    to supramolecular polymers and beyond.
acknowledgement: We thank Maitane Muñoz-Basagoiti for helpful discussions. The research
  was supported by the Gesellschaft für Forschungsförderung Niederösterreich under
  Project No. FTI23-G-011.
article_number: L012054
article_processing_charge: Yes
article_type: original
author:
- first_name: Maximilian
  full_name: Hübl, Maximilian
  id: 5eb8629e-15b2-11ec-abd3-e6f3e5e01f32
  last_name: Hübl
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
citation:
  ama: Hübl M, Goodrich CP. Entropic size control of self-assembled filaments. <i>Physical
    Review Research</i>. 2026;8. doi:<a href="https://doi.org/10.1103/68rs-3qgn">10.1103/68rs-3qgn</a>
  apa: Hübl, M., &#38; Goodrich, C. P. (2026). Entropic size control of self-assembled
    filaments. <i>Physical Review Research</i>. American Physical Society. <a href="https://doi.org/10.1103/68rs-3qgn">https://doi.org/10.1103/68rs-3qgn</a>
  chicago: Hübl, Maximilian, and Carl Peter Goodrich. “Entropic Size Control of Self-Assembled
    Filaments.” <i>Physical Review Research</i>. American Physical Society, 2026.
    <a href="https://doi.org/10.1103/68rs-3qgn">https://doi.org/10.1103/68rs-3qgn</a>.
  ieee: M. Hübl and C. P. Goodrich, “Entropic size control of self-assembled filaments,”
    <i>Physical Review Research</i>, vol. 8. American Physical Society, 2026.
  ista: Hübl M, Goodrich CP. 2026. Entropic size control of self-assembled filaments.
    Physical Review Research. 8, L012054.
  mla: Hübl, Maximilian, and Carl Peter Goodrich. “Entropic Size Control of Self-Assembled
    Filaments.” <i>Physical Review Research</i>, vol. 8, L012054, American Physical
    Society, 2026, doi:<a href="https://doi.org/10.1103/68rs-3qgn">10.1103/68rs-3qgn</a>.
  short: M. Hübl, C.P. Goodrich, Physical Review Research 8 (2026).
corr_author: '1'
date_created: 2026-03-23T14:58:31Z
date_published: 2026-03-05T00:00:00Z
date_updated: 2026-03-23T15:59:11Z
day: '05'
ddc:
- '530'
department:
- _id: CaGo
- _id: GradSch
doi: 10.1103/68rs-3qgn
file:
- access_level: open_access
  checksum: 6d8a68e4a19f8dad5abdf75f72316f3d
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-23T15:53:29Z
  date_updated: 2026-03-23T15:53:29Z
  file_id: '21493'
  file_name: 2026_PhysicalReviewResearch_Huebl.pdf
  file_size: 2680924
  relation: main_file
  success: 1
file_date_updated: 2026-03-23T15:53:29Z
has_accepted_license: '1'
intvolume: '         8'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 8dd93da8-16d5-11f0-9cad-d2c70200d9a5
  grant_number: FTI23-G-011
  name: Dynamically reconfigurable self-assembly with triangular DNA-origami bricks
publication: Physical Review Research
publication_identifier:
  eissn:
  - 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Entropic size control of self-assembled filaments
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21485'
abstract:
- lang: eng
  text: Insulating oxides are among the most abundant solid materials in the universe1,2,3.
    Of the many ways in which they influence natural phenomena, perhaps the most consequential
    is their capacity to transfer electrical charge during contact4,5,6,7,8,9,10—which
    occurs even between samples of the same oxide—yet the symmetry-breaking parameter
    that causes this remains unidentified11,12. Here we show that adventitious carbonaceous
    molecules adsorbed from the environment are the symmetry-breaking factor in same-material
    oxide contact electrification (CE). We use acoustic levitation to measure charge
    exchange between a sphere and a plate composed of identical amorphous silicon
    dioxide (SiO2). Although charging polarity is random for co-prepared samples,
    we control it with baking or plasma treatment. Observing the charge-exchange relaxation
    afterwards, we see dynamics over a timescale of hours and connect this directly
    to the presence of adventitious carbon with time-of-flight mass spectrometry,
    low-energy ion scattering and infrared spectroscopy. Going further, we confirm
    that adventitious carbon can even determine charge exchange among different oxides.
    Our results identify the symmetry-breaking parameter that causes insulating oxides
    to exchange charge in settings ranging from desert sands4 to volcanic plumes5,6,
    while simultaneously highlighting an overlooked factor in CE more broadly.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
- _id: ScienComp
- _id: LifeSc
acknowledgement: This project has received support from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (grant agreement no. 949120) and from the Marie Skłodowska-Curie programme (grant
  agreement no. 754411). We acknowledge the state of Lower Austria and the European
  Regional Development Fund under grant no. WST3-F-542638/004-2021. N.M. acknowledges
  support from grant Fondecyt 1221597. G.G. is a Serra Húnter fellow. This research
  was supported by the Scientific Service Units of the Institute of Science and Technology
  Austria through resources provided by the Miba Machine Shop, Nanofabrication Facility,
  Scientific Computing facility and Lab Support Facility. We thank the Modic group
  for the use of the Laue camera, T. Zauner for the photography of the experimental
  set-up and R. Möller for insightful discussions. Open access funding provided by
  Institute of Science and Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Galien M
  full_name: Grosjean, Galien M
  id: 0C5FDA4A-9CF6-11E9-8939-FF05E6697425
  last_name: Grosjean
  orcid: 0000-0001-5154-417X
- first_name: Markus
  full_name: Ostermann, Markus
  last_name: Ostermann
- first_name: Markus
  full_name: Sauer, Markus
  last_name: Sauer
- first_name: Michael
  full_name: Hahn, Michael
  last_name: Hahn
- first_name: Christian M.
  full_name: Pichler, Christian M.
  last_name: Pichler
- first_name: Florian
  full_name: Fahrnberger, Florian
  last_name: Fahrnberger
- first_name: Felix
  full_name: Pertl, Felix
  id: 6313aec0-15b2-11ec-abd3-ed67d16139af
  last_name: Pertl
  orcid: 0000-0003-0463-5794
- first_name: Daniel
  full_name: Balazs, Daniel
  id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E
  last_name: Balazs
  orcid: 0000-0001-7597-043X
- first_name: Mason M.
  full_name: Link, Mason M.
  last_name: Link
- first_name: Seong H.
  full_name: Kim, Seong H.
  last_name: Kim
- first_name: Devin L.
  full_name: Schrader, Devin L.
  last_name: Schrader
- first_name: Adriana
  full_name: Blanco, Adriana
  last_name: Blanco
- first_name: Francisco
  full_name: Gracia, Francisco
  last_name: Gracia
- first_name: Nicolás
  full_name: Mujica, Nicolás
  last_name: Mujica
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
citation:
  ama: Grosjean GM, Ostermann M, Sauer M, et al. Adventitious carbon breaks symmetry
    in oxide contact electrification. <i>Nature</i>. 2026;651(8106):626-631. doi:<a
    href="https://doi.org/10.1038/s41586-025-10088-w">10.1038/s41586-025-10088-w</a>
  apa: Grosjean, G. M., Ostermann, M., Sauer, M., Hahn, M., Pichler, C. M., Fahrnberger,
    F., … Waitukaitis, S. R. (2026). Adventitious carbon breaks symmetry in oxide
    contact electrification. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-025-10088-w">https://doi.org/10.1038/s41586-025-10088-w</a>
  chicago: Grosjean, Galien M, Markus Ostermann, Markus Sauer, Michael Hahn, Christian
    M. Pichler, Florian Fahrnberger, Felix Pertl, et al. “Adventitious Carbon Breaks
    Symmetry in Oxide Contact Electrification.” <i>Nature</i>. Springer Nature, 2026.
    <a href="https://doi.org/10.1038/s41586-025-10088-w">https://doi.org/10.1038/s41586-025-10088-w</a>.
  ieee: G. M. Grosjean <i>et al.</i>, “Adventitious carbon breaks symmetry in oxide
    contact electrification,” <i>Nature</i>, vol. 651, no. 8106. Springer Nature,
    pp. 626–631, 2026.
  ista: Grosjean GM, Ostermann M, Sauer M, Hahn M, Pichler CM, Fahrnberger F, Pertl
    F, Balazs D, Link MM, Kim SH, Schrader DL, Blanco A, Gracia F, Mujica N, Waitukaitis
    SR. 2026. Adventitious carbon breaks symmetry in oxide contact electrification.
    Nature. 651(8106), 626–631.
  mla: Grosjean, Galien M., et al. “Adventitious Carbon Breaks Symmetry in Oxide Contact
    Electrification.” <i>Nature</i>, vol. 651, no. 8106, Springer Nature, 2026, pp.
    626–31, doi:<a href="https://doi.org/10.1038/s41586-025-10088-w">10.1038/s41586-025-10088-w</a>.
  short: G.M. Grosjean, M. Ostermann, M. Sauer, M. Hahn, C.M. Pichler, F. Fahrnberger,
    F. Pertl, D. Balazs, M.M. Link, S.H. Kim, D.L. Schrader, A. Blanco, F. Gracia,
    N. Mujica, S.R. Waitukaitis, Nature 651 (2026) 626–631.
corr_author: '1'
date_created: 2026-03-23T15:04:00Z
date_published: 2026-03-18T00:00:00Z
date_updated: 2026-04-28T12:06:01Z
day: '18'
ddc:
- '540'
department:
- _id: ScWa
- _id: GradSch
- _id: LifeSc
doi: 10.1038/s41586-025-10088-w
ec_funded: 1
external_id:
  pmid:
  - '41851325'
file:
- access_level: open_access
  checksum: dafef9ed575b44be4263e948a47ae056
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-24T06:57:08Z
  date_updated: 2026-03-24T06:57:08Z
  file_id: '21494'
  file_name: 2026_Nature_Grosjean.pdf
  file_size: 12245694
  relation: main_file
  success: 1
file_date_updated: 2026-03-24T06:57:08Z
has_accepted_license: '1'
intvolume: '       651'
issue: '8106'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 626-631
pmid: 1
project:
- _id: 0aa60e99-070f-11eb-9043-a6de6bdc3afa
  call_identifier: H2020
  grant_number: '949120'
  name: 'Tribocharge: a multi-scale approach to an enduring problem in physics'
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/colliding-dust-and-the-sparks-of-creation/
status: public
title: Adventitious carbon breaks symmetry in oxide contact electrification
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 651
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21490'
abstract:
- lang: eng
  text: Auxin canalization is a self-organizing process that governs the flexible
    formation of vasculature by reinforcing the formation of auxin transport channels.
    A key prerequisite is the feedback between auxin signaling and directional auxin
    transport, mediated by PIN transporters. Despite the developmental importance
    of canalization, the molecular components linking auxin perception to the regulation
    of PIN auxin transporters remain poorly understood. Here, we identify TOW, a novel
    and essential component of auxin canalization that links intracellular auxin signaling
    with cell surface auxin perception. TOW is regulated downstream of TIR1/AFB-Aux/IAA-WRKY23
    transcriptional auxin signaling. tow mutants exhibit defects in regeneration and
    de novo vasculature formation, along with impaired formation of polarized, PIN-expressing
    auxin channels. At the subcellular level, these mutants display disrupted auxin-induced
    PIN polarization and altered PIN endocytic trafficking dynamics. TOW localizes
    predominantly to the plasma membrane, where it interacts with receptor-like kinases
    involved in auxin canalization, including the TMK1 auxin co-receptor and the CAMEL-CANAR
    complex. TOW promotes PIN interaction with these kinases and stabilizes PINs at
    the cell surface. Together, our findings identify TOW as a molecular link between
    intracellular and cell surface auxin signaling mechanisms that converge on PIN
    trafficking and polarity, providing new insights into how auxin signaling regulates
    directional auxin transport for the self-organizing formation of vasculature during
    flexible plant development.
acknowledged_ssus:
- _id: MassSpec
- _id: Bio
- _id: LifeSc
acknowledgement: We thank Dr. Z. Ge (ISTA) for providing vectors for the CRISPR-Cas9
  system, Dr. Armel Nicolas and Dr. Bella Bruszel for phosphoproteomic analysis, Prof.
  Michael Wrzaczek (Czech Academy of Sciences, Czechia) for valuable suggestions,
  and Prof. Maciek Adamowski (University of Gdańsk) for technical assistance. We also
  acknowledge the support of the Mass Spectrometry and Proteomics Facility, the Imaging
  & Optics Facility, and the Lab Support Facility at the Institute of Science and
  Technology Austria. This research was supported by the Scientific Service Units
  (SSU) of ISTA, utilizing resources provided by the Imaging & Optics Facility (IOF)
  and the Lab Support Facility (LSF). The work conducted by the Friml group was funded
  by the European Research Council (ERC) under grant agreement no. 101142681 (CYNIPS)
  and by the Austrian Science Fund (FWF) under project ESP271. We acknowledge the
  core facility CELLIM supported by MEYS CR (LM2023050 Czech-BioImaging) and the Plant
  Sciences Core Facility of CEITEC Masaryk University. E.M. received support from
  the National Science Centre (NCN), Poland, through the OPUS call within the Weave
  programme (grant no. 2021/43/I/NZ1/01835). T.N. received support from TowArds Next
  GENeration Crops, reg. no. CZ.02.01.01/00/22_008/0004581 of the ERDF Programme Johannes
  Amos Comenius.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Mingyue
  full_name: Li, Mingyue
  id: 01f96916-0235-11eb-9379-a323192643b7
  last_name: Li
- first_name: Nikola
  full_name: Rydza, Nikola
  last_name: Rydza
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Tomasz
  full_name: Nodzyński, Tomasz
  last_name: Nodzyński
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Li M, Rydza N, Mazur E, Molnar G, Nodzyński T, Friml J. Receptor-like-kinase-interacting
    protein TOW stabilizes PIN transporters for auxin canalization. <i>Current Biology</i>.
    2026;36(6):1468-1480.e6. doi:<a href="https://doi.org/10.1016/j.cub.2026.02.023">10.1016/j.cub.2026.02.023</a>
  apa: Li, M., Rydza, N., Mazur, E., Molnar, G., Nodzyński, T., &#38; Friml, J. (2026).
    Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin
    canalization. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2026.02.023">https://doi.org/10.1016/j.cub.2026.02.023</a>
  chicago: Li, Mingyue, Nikola Rydza, Ewa Mazur, Gergely Molnar, Tomasz Nodzyński,
    and Jiří Friml. “Receptor-like-Kinase-Interacting Protein TOW Stabilizes PIN Transporters
    for Auxin Canalization.” <i>Current Biology</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.cub.2026.02.023">https://doi.org/10.1016/j.cub.2026.02.023</a>.
  ieee: M. Li, N. Rydza, E. Mazur, G. Molnar, T. Nodzyński, and J. Friml, “Receptor-like-kinase-interacting
    protein TOW stabilizes PIN transporters for auxin canalization,” <i>Current Biology</i>,
    vol. 36, no. 6. Elsevier, p. 1468–1480.e6, 2026.
  ista: Li M, Rydza N, Mazur E, Molnar G, Nodzyński T, Friml J. 2026. Receptor-like-kinase-interacting
    protein TOW stabilizes PIN transporters for auxin canalization. Current Biology.
    36(6), 1468–1480.e6.
  mla: Li, Mingyue, et al. “Receptor-like-Kinase-Interacting Protein TOW Stabilizes
    PIN Transporters for Auxin Canalization.” <i>Current Biology</i>, vol. 36, no.
    6, Elsevier, 2026, p. 1468–1480.e6, doi:<a href="https://doi.org/10.1016/j.cub.2026.02.023">10.1016/j.cub.2026.02.023</a>.
  short: M. Li, N. Rydza, E. Mazur, G. Molnar, T. Nodzyński, J. Friml, Current Biology
    36 (2026) 1468–1480.e6.
corr_author: '1'
date_created: 2026-03-23T15:11:16Z
date_published: 2026-03-23T00:00:00Z
date_updated: 2026-03-24T08:36:40Z
day: '23'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.cub.2026.02.023
external_id:
  pmid:
  - '41831441'
file:
- access_level: open_access
  checksum: fe6c41fdab58a55df5f2a5860c02acdc
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-24T08:34:37Z
  date_updated: 2026-03-24T08:34:37Z
  file_id: '21496'
  file_name: 2026_CurrentBiology_Li.pdf
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  relation: main_file
  success: 1
file_date_updated: 2026-03-24T08:34:37Z
has_accepted_license: '1'
intvolume: '        36'
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1468-1480.e6
pmid: 1
project:
- _id: 8f347782-16d5-11f0-9cad-8c19706ee739
  grant_number: '101142681'
  name: Cyclic nucleotides as second messengers in plants
- _id: bd906599-d553-11ed-ba76-abf8547645d7
  grant_number: E271
  name: Identification of a novel regulator in auxin canalization
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for
  auxin canalization
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21501'
abstract:
- lang: eng
  text: "Kinetically constrained models were originally introduced to capture slow
    relaxation in glassy systems, where dynamics are hindered by local constraints
    instead of energy barriers. Their quantum counterparts have recently drawn attention
    for exhibiting highly degenerate eigenstates at zero energy—known as zero modes—stemming
    from chiral symmetry. Yet, the structure and implications of these zero modes
    remain poorly understood. In this work, we focus on the properties of the zero
    mode subspace in quantum kinetically constrained models with a U(1) particle-conservation
    symmetry. We use the U(1) East, which lacks inversion symmetry, and the inversion-symmetric
    U(1) East-West models to illustrate our two main results. First, we observe that
    the simultaneous presence of constraints and chiral symmetry generally leads to
    a parametric increase in the number of zero modes due to the fragmentation of
    the many-body\r\nHilbert space into disconnected sectors. Second, we generalize
    the concept of compact localized states from single-particle physics and introduce
    the notion of collective bound states, a special kind of nonergodic eigenstates
    that are robust to enlarging the system size. We formulate sufficient criteria
    for their existence, arguing that the degenerate zero mode subspace plays a central
    role, and demonstrate bound states in both example models and in a two-dimensional
    model, the U(1) North-East, and in the pairflip model, a system without particle
    conservation. Our results motivate a systematic study of bound states and their
    relation to ergodicity breaking, transport, and other properties of quantum kinetically
    constrained\r\nmodels. "
acknowledgement: The authors acknowledge useful discussions with Berislav Buca. This
  work was supported by the European Research Council (ERC) under the European Union’s
  Horizon 2020 research and innovation program (Grant Agreement No. 850899). M.L.
  acknowledges support by the Deutsche Forschungsgemeinschaft (DFG, German Research
  Foundation) under Germany’s Excellence Strategy—EXC-2111—390814868. This research
  was supported in part by grant NSF PHY-2309135 to the Kavli Institute for Theoretical
  Physics (KITP).
article_number: '010352'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Eulalia
  full_name: Nicolau Jimenez, Eulalia
  id: 04b4791c-8fd7-11ee-a7df-be2fdc569c48
  last_name: Nicolau Jimenez
- first_name: Marko
  full_name: Ljubotina, Marko
  id: F75EE9BE-5C90-11EA-905D-16643DDC885E
  last_name: Ljubotina
  orcid: 0000-0003-0038-7068
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Nicolau Jimenez E, Ljubotina M, Serbyn M. Fragmentation, zero modes, and collective
    bound states in constrained models. <i>PRX Quantum</i>. 2026;7. doi:<a href="https://doi.org/10.1103/sl79-1xgb">10.1103/sl79-1xgb</a>
  apa: Nicolau Jimenez, E., Ljubotina, M., &#38; Serbyn, M. (2026). Fragmentation,
    zero modes, and collective bound states in constrained models. <i>PRX Quantum</i>.
    American Physical Society. <a href="https://doi.org/10.1103/sl79-1xgb">https://doi.org/10.1103/sl79-1xgb</a>
  chicago: Nicolau Jimenez, Eulalia, Marko Ljubotina, and Maksym Serbyn. “Fragmentation,
    Zero Modes, and Collective Bound States in Constrained Models.” <i>PRX Quantum</i>.
    American Physical Society, 2026. <a href="https://doi.org/10.1103/sl79-1xgb">https://doi.org/10.1103/sl79-1xgb</a>.
  ieee: E. Nicolau Jimenez, M. Ljubotina, and M. Serbyn, “Fragmentation, zero modes,
    and collective bound states in constrained models,” <i>PRX Quantum</i>, vol. 7.
    American Physical Society, 2026.
  ista: Nicolau Jimenez E, Ljubotina M, Serbyn M. 2026. Fragmentation, zero modes,
    and collective bound states in constrained models. PRX Quantum. 7, 010352.
  mla: Nicolau Jimenez, Eulalia, et al. “Fragmentation, Zero Modes, and Collective
    Bound States in Constrained Models.” <i>PRX Quantum</i>, vol. 7, 010352, American
    Physical Society, 2026, doi:<a href="https://doi.org/10.1103/sl79-1xgb">10.1103/sl79-1xgb</a>.
  short: E. Nicolau Jimenez, M. Ljubotina, M. Serbyn, PRX Quantum 7 (2026).
corr_author: '1'
date_created: 2026-03-28T14:57:56Z
date_published: 2026-03-13T00:00:00Z
date_updated: 2026-03-30T06:09:28Z
day: '13'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/sl79-1xgb
ec_funded: 1
external_id:
  arxiv:
  - '2504.17627'
file:
- access_level: open_access
  checksum: d155ffa9e1a8275702149165f4bf963c
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-30T06:08:07Z
  date_updated: 2026-03-30T06:08:07Z
  file_id: '21505'
  file_name: 2026_PRXQuantum_Nicolau.pdf
  file_size: 1848724
  relation: main_file
  success: 1
file_date_updated: 2026-03-30T06:08:07Z
has_accepted_license: '1'
intvolume: '         7'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: PRX Quantum
publication_identifier:
  eissn:
  - 2691-3399
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fragmentation, zero modes, and collective bound states in constrained models
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21503'
abstract:
- lang: eng
  text: Currently, pharmacogenetics relies on partially annotated star alleles, leaving
    novel variants and complex haplotypes uninterpretable. Computational scoring frameworks
    could overcome these limitations. Here, we comprehensively evaluated the ability
    of existing (CADD, FATHMM-XF, PROVEAN, MutationAssessor, SIFT, PhyloP100, APF,
    APF2) and novel (PharmGScore and PharmMLScore) variant effect predictors to assess
    pharmacogenetic alleles in multiple scenarios. Altogether we analyzed 541 PharmVar
    alleles, high‑throughput CYP2C9 and CYP2C19 mutational maps, and 200 642 UK Biobank
    exomes linked with health records containing antidepressant treatment outcomes.
    Many evaluated tools, especially ensemble frameworks, matched or exceeded star
    allele classifications (ROC‑AUC up to 0.85 for allele definitions, 0.95 in vitro;
    TPR up to 0.99 for exomes) and accurately predicted severe antidepressant adverse
    events for carriers of deleterious variants in CYP2C19 (OR 1.20–1.35). Our findings
    show that computational predictors deliver star allele accuracy while overcoming
    their limitations. With additional validation, computational tools could enhance
    clinical decision frameworks by enabling continuous scoring, incorporating previously
    unknown variants, and providing genome-wide applicability.
acknowledgement: "This research has been conducted using the UK Biobank Resource under
  Application Number 62979. We are grateful to the UK Biobank and all its voluntary
  participants. This work used data provided by patients and collected by the NHS
  as part of their care and support.\r\n\r\nThis study was funded by the National
  Science Center, Poland: PRELUDIUM BIS-3 grant no. 2021/43/O/NZ7/01187 (development
  and benchmarking of variant scores) and SONATINA 5 grant 2021/40/C/NZ2/00218 (UKB
  analyses). Additional support came from the statutory funds of the Maj Institute
  of Pharmacology PAS. We gratefully acknowledge Poland’s high-performance Infrastructure
  PLGrid ACK Cyfronet AGH, for providing computer facilities and support within computational
  grant no PLG/2022/015861. DMF and GEB were funded by NIH grants NIH R35GM152106
  and UM1HG011969."
article_number: '8'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jacek
  full_name: Hajto, Jacek
  last_name: Hajto
- first_name: Marcin
  full_name: Piechota, Marcin
  last_name: Piechota
- first_name: Ilse
  full_name: Krätschmer, Ilse
  id: 30d4014e-7753-11eb-b44b-db6d61112e73
  last_name: Krätschmer
  orcid: 0000-0002-5636-9259
- first_name: Paula
  full_name: Konowalska, Paula
  last_name: Konowalska
- first_name: Gabriel E.
  full_name: Boyle, Gabriel E.
  last_name: Boyle
- first_name: Douglas M.
  full_name: Fowler, Douglas M.
  last_name: Fowler
- first_name: Malgorzata
  full_name: Borczyk, Malgorzata
  last_name: Borczyk
- first_name: Michal
  full_name: Korostynski, Michal
  last_name: Korostynski
citation:
  ama: 'Hajto J, Piechota M, Krätschmer I, et al. Computational variant predictors
    for pharmacogenomics: From evaluation of single alleles to assessment of adverse
    drug reactions to antidepressants. <i>Pharmacogenomics Journal</i>. 2026;26(2).
    doi:<a href="https://doi.org/10.1038/s41397-026-00399-0">10.1038/s41397-026-00399-0</a>'
  apa: 'Hajto, J., Piechota, M., Krätschmer, I., Konowalska, P., Boyle, G. E., Fowler,
    D. M., … Korostynski, M. (2026). Computational variant predictors for pharmacogenomics:
    From evaluation of single alleles to assessment of adverse drug reactions to antidepressants.
    <i>Pharmacogenomics Journal</i>. Springer Nature. <a href="https://doi.org/10.1038/s41397-026-00399-0">https://doi.org/10.1038/s41397-026-00399-0</a>'
  chicago: 'Hajto, Jacek, Marcin Piechota, Ilse Krätschmer, Paula Konowalska, Gabriel
    E. Boyle, Douglas M. Fowler, Malgorzata Borczyk, and Michal Korostynski. “Computational
    Variant Predictors for Pharmacogenomics: From Evaluation of Single Alleles to
    Assessment of Adverse Drug Reactions to Antidepressants.” <i>Pharmacogenomics
    Journal</i>. Springer Nature, 2026. <a href="https://doi.org/10.1038/s41397-026-00399-0">https://doi.org/10.1038/s41397-026-00399-0</a>.'
  ieee: 'J. Hajto <i>et al.</i>, “Computational variant predictors for pharmacogenomics:
    From evaluation of single alleles to assessment of adverse drug reactions to antidepressants,”
    <i>Pharmacogenomics Journal</i>, vol. 26, no. 2. Springer Nature, 2026.'
  ista: 'Hajto J, Piechota M, Krätschmer I, Konowalska P, Boyle GE, Fowler DM, Borczyk
    M, Korostynski M. 2026. Computational variant predictors for pharmacogenomics:
    From evaluation of single alleles to assessment of adverse drug reactions to antidepressants.
    Pharmacogenomics Journal. 26(2), 8.'
  mla: 'Hajto, Jacek, et al. “Computational Variant Predictors for Pharmacogenomics:
    From Evaluation of Single Alleles to Assessment of Adverse Drug Reactions to Antidepressants.”
    <i>Pharmacogenomics Journal</i>, vol. 26, no. 2, 8, Springer Nature, 2026, doi:<a
    href="https://doi.org/10.1038/s41397-026-00399-0">10.1038/s41397-026-00399-0</a>.'
  short: J. Hajto, M. Piechota, I. Krätschmer, P. Konowalska, G.E. Boyle, D.M. Fowler,
    M. Borczyk, M. Korostynski, Pharmacogenomics Journal 26 (2026).
date_created: 2026-03-29T22:07:08Z
date_published: 2026-03-09T00:00:00Z
date_updated: 2026-03-30T07:10:50Z
day: '09'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1038/s41397-026-00399-0
external_id:
  pmid:
  - '41803106'
file:
- access_level: open_access
  checksum: 2fd3d7e48b779ac24245f6c35449b89a
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-30T07:04:08Z
  date_updated: 2026-03-30T07:04:08Z
  file_id: '21506'
  file_name: 2026_PharmacogenomicsJour_Hajto.pdf
  file_size: 2618963
  relation: main_file
  success: 1
file_date_updated: 2026-03-30T07:04:08Z
has_accepted_license: '1'
intvolume: '        26'
issue: '2'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Pharmacogenomics Journal
publication_identifier:
  eissn:
  - 1473-1150
  issn:
  - ' 1470-269X'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Computational variant predictors for pharmacogenomics: From evaluation of
  single alleles to assessment of adverse drug reactions to antidepressants'
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21509'
abstract:
- lang: eng
  text: Chromatin remodeling complexes mobilize nucleosomes and promote transcription
    factor (TF) binding. Using ensemble and single-molecule assays combined with cryo-electron
    microscopy (cryo-EM), we studied the interaction between pioneer TFs OCT4–SOX2
    and the human BRG1/BRM-associated factor (BAF) complex on nucleosomes. BAF engages
    TF-bound substrates in two orientations, placing OCT4–SOX2 at either the remodeler
    ENTRY or EXIT site. At the ENTRY site, OCT4–SOX2 initially coexists with BAF without
    structural interference. However, continued DNA translocation is expected to cause
    collisions with bound TFs, which can trigger remodeling direction reversals or
    may induce TF dissociation. To accommodate TFs at the EXIT site, BAF undergoes
    structural rearrangements, and ensemble assays reveal a nucleosome subpopulation
    translocating away from TF-binding sites. Moreover, single-molecule experiments
    show that nucleosome-bound BAF frequently changes remodeling direction, and we
    identify an ADP-bound remodeler conformation as a potential intermediate. Together,
    these findings reveal key aspects of the conformational dynamics and remodeling
    outcomes underlying BAF processing of TF-bound nucleosomes.
acknowledgement: We thank D. Hess, V. Iesmantavicius, and J. Seebacher (FMI Proteomics
  and Protein Analysis Facility) for mass spectrometry support; S. Smallwood, K. Shimada,
  D. Klein, and M. Schütz-Stoffregen for technical assistance; J. Côté and C. Lachance
  for critical discussions; and members of the Thomä lab for helpful feedback. Support
  for this work was provided to N.H.T. by the European Research Council under the
  European Union’s Horizon 2020 research program (NucEM, no. 884331), the Novartis
  Research Foundation, the Swiss National Science Foundation (SNF 31003A_179541, 310030_214852,
  and Sinergia CRSII5_186230), and the Swiss Cancer Research (KFS-4980-02-2020 and
  KFS-5933-08-2023). S.D. was supported by the European Research Council (DONUTS,
  no. 101092623), the Knut and Alice Wallenberg Foundation (2024.0012), the Cancerfonden
  (25 4453 Pj), and the Swedish Research Council (VR 03255). A.K.M. was supported
  by a Human Frontier Science Program Long-Term Fellowship, and L.V. was supported
  by an EMBO fellowship (ALTF 549-2021).
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Joscha
  full_name: Weiss, Joscha
  last_name: Weiss
- first_name: Luca
  full_name: Vecchia, Luca
  last_name: Vecchia
- first_name: David
  full_name: Domjan, David
  last_name: Domjan
- first_name: Simone
  full_name: Cavadini, Simone
  last_name: Cavadini
- first_name: Anton
  full_name: Sabantsev, Anton
  last_name: Sabantsev
- first_name: Georg
  full_name: Kempf, Georg
  last_name: Kempf
- first_name: Ganesh R.
  full_name: Pathare, Ganesh R.
  last_name: Pathare
- first_name: Klaus
  full_name: Brackmann, Klaus
  last_name: Brackmann
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Lukas
  full_name: Kater, Lukas
  last_name: Kater
- first_name: Eric
  full_name: Hietter-Pfeiffer, Eric
  last_name: Hietter-Pfeiffer
- first_name: Mina
  full_name: Haddawi, Mina
  last_name: Haddawi
- first_name: Urja P.
  full_name: Kuber, Urja P.
  last_name: Kuber
- first_name: Sandra
  full_name: Mühlhäusser, Sandra
  last_name: Mühlhäusser
- first_name: Ralph S.
  full_name: Grand, Ralph S.
  last_name: Grand
- first_name: Michael B.
  full_name: Stadler, Michael B.
  last_name: Stadler
- first_name: Sebastian
  full_name: Deindl, Sebastian
  last_name: Deindl
- first_name: Nicolas H.
  full_name: Thomä, Nicolas H.
  last_name: Thomä
citation:
  ama: Weiss J, Vecchia L, Domjan D, et al. The human BAF chromatin remodeler processes
    nucleosomes bound by pioneer transcription factors OCT4–SOX2. <i>Molecular Cell</i>.
    2026;86(4):625-639.e8. doi:<a href="https://doi.org/10.1016/j.molcel.2026.01.021">10.1016/j.molcel.2026.01.021</a>
  apa: Weiss, J., Vecchia, L., Domjan, D., Cavadini, S., Sabantsev, A., Kempf, G.,
    … Thomä, N. H. (2026). The human BAF chromatin remodeler processes nucleosomes
    bound by pioneer transcription factors OCT4–SOX2. <i>Molecular Cell</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.molcel.2026.01.021">https://doi.org/10.1016/j.molcel.2026.01.021</a>
  chicago: Weiss, Joscha, Luca Vecchia, David Domjan, Simone Cavadini, Anton Sabantsev,
    Georg Kempf, Ganesh R. Pathare, et al. “The Human BAF Chromatin Remodeler Processes
    Nucleosomes Bound by Pioneer Transcription Factors OCT4–SOX2.” <i>Molecular Cell</i>.
    Elsevier, 2026. <a href="https://doi.org/10.1016/j.molcel.2026.01.021">https://doi.org/10.1016/j.molcel.2026.01.021</a>.
  ieee: J. Weiss <i>et al.</i>, “The human BAF chromatin remodeler processes nucleosomes
    bound by pioneer transcription factors OCT4–SOX2,” <i>Molecular Cell</i>, vol.
    86, no. 4. Elsevier, p. 625–639.e8, 2026.
  ista: Weiss J, Vecchia L, Domjan D, Cavadini S, Sabantsev A, Kempf G, Pathare GR,
    Brackmann K, Michael AK, Kater L, Hietter-Pfeiffer E, Haddawi M, Kuber UP, Mühlhäusser
    S, Grand RS, Stadler MB, Deindl S, Thomä NH. 2026. The human BAF chromatin remodeler
    processes nucleosomes bound by pioneer transcription factors OCT4–SOX2. Molecular
    Cell. 86(4), 625–639.e8.
  mla: Weiss, Joscha, et al. “The Human BAF Chromatin Remodeler Processes Nucleosomes
    Bound by Pioneer Transcription Factors OCT4–SOX2.” <i>Molecular Cell</i>, vol.
    86, no. 4, Elsevier, 2026, p. 625–639.e8, doi:<a href="https://doi.org/10.1016/j.molcel.2026.01.021">10.1016/j.molcel.2026.01.021</a>.
  short: J. Weiss, L. Vecchia, D. Domjan, S. Cavadini, A. Sabantsev, G. Kempf, G.R.
    Pathare, K. Brackmann, A.K. Michael, L. Kater, E. Hietter-Pfeiffer, M. Haddawi,
    U.P. Kuber, S. Mühlhäusser, R.S. Grand, M.B. Stadler, S. Deindl, N.H. Thomä, Molecular
    Cell 86 (2026) 625–639.e8.
date_created: 2026-03-30T11:58:48Z
date_published: 2026-02-19T00:00:00Z
date_updated: 2026-03-30T12:09:08Z
day: '19'
ddc:
- '570'
department:
- _id: AlMi
doi: 10.1016/j.molcel.2026.01.021
external_id:
  pmid:
  - '41679301'
file:
- access_level: open_access
  checksum: e16a7315b64a706184b177ea1621523c
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  creator: dernst
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  date_updated: 2026-03-30T12:04:38Z
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language:
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month: '02'
oa: 1
oa_version: Published Version
page: 625-639.e8
pmid: 1
publication: Molecular Cell
publication_identifier:
  issn:
  - 1097-2765
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The human BAF chromatin remodeler processes nucleosomes bound by pioneer transcription
  factors OCT4–SOX2
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 86
year: '2026'
...
---
OA_place: publisher
_id: '21651'
abstract:
- lang: eng
  text: "Blockchains enable distributed consensus in permissionless settings, where
    participants\r\nare unknown, dynamically changing, and do not trust each other.
    While Bitcoin,\r\nbased on Proof-of-Work (PoW), was the first protocol in this
    model, significant\r\nresearch has focused on permissionless protocols using alternative
    physical resources,\r\nspecifically Proof-of-Space (PoSpace) and Verifiable Delay
    Functions (VDFs). This\r\nthesis investigates the theoretical limits and design
    space of longest-chain protocols in\r\nthe fully permissionless and dynamically
    available settings using these three resources.\r\nFirst, we address the feasibility
    of blockchains relying solely on storage as a resource.\r\nWe prove a fundamental
    impossibility result: there exists no secure longest-chain\r\nprotocol based exclusively
    on Proof-of-Space in the fully permissionless or dynamically\r\navailable settings.
    Further, we quantify the adversarial capabilities required to execute\r\na double-spend
    attack. Our result formally justifies the necessity of coupling PoSpace\r\nwith
    time-dependent primitives (such as VDFs) or to move to less permissive settings\r\n(quasi-permissionless
    or permissioned) to ensure security.\r\nSecond, we generalize Nakamoto-like heaviest
    chain consensus to protocols utilizing\r\ncombinations of multiple physical resources.
    We analyze chain selection rules governed\r\nby a weight function Γ(S, V,W), which
    assigns weight to blocks based on recorded\r\nSpace (S), VDF speed (V ), and Work
    (W). We provide a complete classification\r\nof secure weight functions, proving
    that a weight function is secure against private\r\ndouble-spend attacks if and
    only if it is homogeneous in the timed resources (V,W)\r\nand sub-homogeneous
    in S. This framework unifies existing protocols like Bitcoin and\r\nChia under
    a single theoretical model and provides a powerful tool for designing new\r\nlongest-chain
    blockchains from a mix of physical resources."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mirza Ahad
  full_name: Baig, Mirza Ahad
  id: 3EDE6DE4-AA5A-11E9-986D-341CE6697425
  last_name: Baig
citation:
  ama: Baig MA. On secure chain selection rules from physical resources in a permissionless
    setting. 2026. doi:<a href="https://doi.org/10.15479/AT-ISTA-21651">10.15479/AT-ISTA-21651</a>
  apa: Baig, M. A. (2026). <i>On secure chain selection rules from physical resources
    in a permissionless setting</i>. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT-ISTA-21651">https://doi.org/10.15479/AT-ISTA-21651</a>
  chicago: Baig, Mirza Ahad. “On Secure Chain Selection Rules from Physical Resources
    in a Permissionless Setting.” Institute of Science and Technology Austria, 2026.
    <a href="https://doi.org/10.15479/AT-ISTA-21651">https://doi.org/10.15479/AT-ISTA-21651</a>.
  ieee: M. A. Baig, “On secure chain selection rules from physical resources in a
    permissionless setting,” Institute of Science and Technology Austria, 2026.
  ista: Baig MA. 2026. On secure chain selection rules from physical resources in
    a permissionless setting. Institute of Science and Technology Austria.
  mla: Baig, Mirza Ahad. <i>On Secure Chain Selection Rules from Physical Resources
    in a Permissionless Setting</i>. Institute of Science and Technology Austria,
    2026, doi:<a href="https://doi.org/10.15479/AT-ISTA-21651">10.15479/AT-ISTA-21651</a>.
  short: M.A. Baig, On Secure Chain Selection Rules from Physical Resources in a Permissionless
    Setting, Institute of Science and Technology Austria, 2026.
corr_author: '1'
date_created: 2026-04-02T09:31:34Z
date_published: 2026-03-04T00:00:00Z
date_updated: 2026-04-15T08:45:19Z
day: '04'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: GradSch
- _id: KrPi
doi: 10.15479/AT-ISTA-21651
file:
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  date_created: 2026-04-03T17:29:30Z
  date_updated: 2026-04-15T07:37:25Z
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  file_size: 1942037
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file_date_updated: 2026-04-15T07:37:25Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication_identifier:
  isbn:
  - 978-3-99078-078-7
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '21134'
    relation: part_of_dissertation
    status: public
  - id: '20587'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
title: On secure chain selection rules from physical resources in a permissionless
  setting
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21657'
abstract:
- lang: eng
  text: We compare three global kilometer-scale models (ICON, IFS and NICAM) to clarify
    the advantages and challenges of high-resolution global weather and climate modeling,
    using different approaches to represent convection, from fully parameterized to
    fully explicit. Our analysis focuses on tropical precipitation characteristics
    spanning a wide range of spatio-temporal scales—including the diurnal cycle, extreme
    precipitation, convective organization, and the Madden-Julian Oscillation (MJO)—along
    with interactions between convection and the thermodynamic environment. All three
    models commonly show weaker convective organization with smaller precipitation
    cells than observed, though the strength of the bias varies by model. This diversity
    is introduced by differences in the representation of (a) convective initiation
    affected by the convective sensitivity to moisture and (b) tropospheric moistening
    associated with deep convection. Models with stronger thermodynamic-convection
    coupling increase environmental moisture near convection, thereby enhancing convective
    organization. This has important upscale effects on the MJO; while IFS and NICAM
    capture its eastward propagation well, ICON has difficulty reproducing it. The
    amplitudes and phases of precipitation diurnal cycles over land show much greater
    disagreement among the models than over ocean, influenced by how convection is
    initiated. Biases in rain evaporation and cold pool formation hinder the propagation
    of mesoscale convection, leading to errors such as the misrepresentation of nocturnal
    convection moving off the coast of Sumatra in IFS and ICON. These results highlight
    the importance of thermodynamic-convection coupling in realistically simulating
    tropical convection across scales. To improve this coupling, kilometer-scale models
    require better representation of the interaction between resolved convection and
    three-dimensional turbulent mixing.
acknowledgement: 'We thank Peter Bechtold, Lukas Brunner, Peter Dueben, Richard Forbes,
  Estibaliz Gascon, and Benoit Vanniere for providing insightful comments on the present
  study. We also thank Sebastian Milinski, Xabier Pedruzo and Thomas Rackow for their
  contributions to setting up IFS-FESOM for nextGEMS. We are also grateful to Dr.
  Walter Hannah and an anonymous reviewer for their constructive comments, which improved
  the original version of the manuscript. D. Takasuka was supported by JSPS KAKENHI
  Grants 20H05728 and 24K22893 and by JSPS Core-to-Core Program, “International Core-to-Core
  Project on Global Storm Resolving Analysis” (Grant Number: JPJSCCA20220001). T.
  Becker was supported by the Horizon 2020 project nextGEMS under grant agreement
  number 101003470. J. Bao acknowledges funding from the European Union''s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie grant (grant
  agreement No 101034413). The ICON and IFS simulations were performed with supercomputing
  resources of the German Climate Computing Centre (Deutsches Klimarechenzentrum,
  DKRZ) granted by its Scientific Steering Committee (WLA) under project ID 1235.
  The NICAM simulation was performed on the supercomputer Fugaku (proposal numbers
  hp220132, hp230078, hp230108, hp230278, and hp240267).'
article_number: e2025MS005343
article_processing_charge: Yes
article_type: original
author:
- first_name: Daisuke
  full_name: Takasuka, Daisuke
  last_name: Takasuka
- first_name: Tobias
  full_name: Becker, Tobias
  last_name: Becker
- first_name: Jiawei
  full_name: Bao, Jiawei
  id: bb9a7399-fefd-11ed-be3c-ae648fd1d160
  last_name: Bao
citation:
  ama: Takasuka D, Becker T, Bao J. Precipitation characteristics and thermodynamic-convection
    coupling in global kilometer-scale simulations. <i>Journal of Advances in Modeling
    Earth Systems</i>. 2026;18(3). doi:<a href="https://doi.org/10.1029/2025MS005343">10.1029/2025MS005343</a>
  apa: Takasuka, D., Becker, T., &#38; Bao, J. (2026). Precipitation characteristics
    and thermodynamic-convection coupling in global kilometer-scale simulations. <i>Journal
    of Advances in Modeling Earth Systems</i>. Wiley. <a href="https://doi.org/10.1029/2025MS005343">https://doi.org/10.1029/2025MS005343</a>
  chicago: Takasuka, Daisuke, Tobias Becker, and Jiawei Bao. “Precipitation Characteristics
    and Thermodynamic-Convection Coupling in Global Kilometer-Scale Simulations.”
    <i>Journal of Advances in Modeling Earth Systems</i>. Wiley, 2026. <a href="https://doi.org/10.1029/2025MS005343">https://doi.org/10.1029/2025MS005343</a>.
  ieee: D. Takasuka, T. Becker, and J. Bao, “Precipitation characteristics and thermodynamic-convection
    coupling in global kilometer-scale simulations,” <i>Journal of Advances in Modeling
    Earth Systems</i>, vol. 18, no. 3. Wiley, 2026.
  ista: Takasuka D, Becker T, Bao J. 2026. Precipitation characteristics and thermodynamic-convection
    coupling in global kilometer-scale simulations. Journal of Advances in Modeling
    Earth Systems. 18(3), e2025MS005343.
  mla: Takasuka, Daisuke, et al. “Precipitation Characteristics and Thermodynamic-Convection
    Coupling in Global Kilometer-Scale Simulations.” <i>Journal of Advances in Modeling
    Earth Systems</i>, vol. 18, no. 3, e2025MS005343, Wiley, 2026, doi:<a href="https://doi.org/10.1029/2025MS005343">10.1029/2025MS005343</a>.
  short: D. Takasuka, T. Becker, J. Bao, Journal of Advances in Modeling Earth Systems
    18 (2026).
corr_author: '1'
date_created: 2026-04-05T22:01:31Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-06-16T10:43:35Z
day: '01'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1029/2025MS005343
ec_funded: 1
file:
- access_level: open_access
  checksum: ca7dac4bab31348d0640ed22580c6dce
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-07T09:11:23Z
  date_updated: 2026-04-07T09:11:23Z
  file_id: '21665'
  file_name: 2026_JAMES_Takasuka.pdf
  file_size: 3854313
  relation: main_file
  success: 1
file_date_updated: 2026-04-07T09:11:23Z
has_accepted_license: '1'
intvolume: '        18'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
  eissn:
  - 1942-2466
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Precipitation characteristics and thermodynamic-convection coupling in global
  kilometer-scale simulations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21660'
abstract:
- lang: eng
  text: Kapitza-Dirac scattering, the diffraction of matter waves from a standing
    light field, is widely utilized in ultracold gases, but its behavior in the strongly
    interacting regime is an open question. Here, we develop a numerically exact two-body
    description of Kapitza-Dirac scattering for two contact-interacting atoms in a
    one-dimensional harmonic trap subjected to a pulsed optical lattice, enabling
    us to obtain the numerically exact dynamics. We map how interaction strength,
    lattice depth, lattice wave number, and pulse duration reshape the diffraction
    pattern, leading to an interaction-dependent population redistribution in real
    and momentum space. By comparing the exact dynamics to an impulsive sudden-approximation
    description, we delineate the parameter regimes where it remains accurate and
    those, notably at strong attraction and small lattice wave number, where it fails.
    Our results provide a controlled few-body benchmark for interacting Kapitza-Dirac
    scattering and quantitative guidance for Kapitza-Dirac-based probes of ultracold
    atomic systems.
acknowledgement: We thank Max Hachmann, Andreas Hemmerich, and Yann Kiefer for valuable
  discussions. This work has been funded by the Cluster of Excellence “Advanced Imaging
  of Matter” of the Deutsche Forschungsgemeinschaft (DFG) - EXC 2056 - Project ID
  390715994. G.M.K. has received funding by the Austrian Science Fund (FWF) 10.55776/F1004.
article_number: '013297'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: A.
  full_name: Becker, A.
  last_name: Becker
- first_name: Georgios
  full_name: Koutentakis, Georgios
  id: d7b23d3a-9e21-11ec-b482-f76739596b95
  last_name: Koutentakis
- first_name: P.
  full_name: Schmelcher, P.
  last_name: Schmelcher
citation:
  ama: Becker A, Koutentakis G, Schmelcher P. Two-body Kapitza-Dirac scattering of
    one-dimensional ultracold atoms. <i>Physical Review Research</i>. 2026;8. doi:<a
    href="https://doi.org/10.1103/rdsn-stlq">10.1103/rdsn-stlq</a>
  apa: Becker, A., Koutentakis, G., &#38; Schmelcher, P. (2026). Two-body Kapitza-Dirac
    scattering of one-dimensional ultracold atoms. <i>Physical Review Research</i>.
    American Physical Society. <a href="https://doi.org/10.1103/rdsn-stlq">https://doi.org/10.1103/rdsn-stlq</a>
  chicago: Becker, A., Georgios Koutentakis, and P. Schmelcher. “Two-Body Kapitza-Dirac
    Scattering of One-Dimensional Ultracold Atoms.” <i>Physical Review Research</i>.
    American Physical Society, 2026. <a href="https://doi.org/10.1103/rdsn-stlq">https://doi.org/10.1103/rdsn-stlq</a>.
  ieee: A. Becker, G. Koutentakis, and P. Schmelcher, “Two-body Kapitza-Dirac scattering
    of one-dimensional ultracold atoms,” <i>Physical Review Research</i>, vol. 8.
    American Physical Society, 2026.
  ista: Becker A, Koutentakis G, Schmelcher P. 2026. Two-body Kapitza-Dirac scattering
    of one-dimensional ultracold atoms. Physical Review Research. 8, 013297.
  mla: Becker, A., et al. “Two-Body Kapitza-Dirac Scattering of One-Dimensional Ultracold
    Atoms.” <i>Physical Review Research</i>, vol. 8, 013297, American Physical Society,
    2026, doi:<a href="https://doi.org/10.1103/rdsn-stlq">10.1103/rdsn-stlq</a>.
  short: A. Becker, G. Koutentakis, P. Schmelcher, Physical Review Research 8 (2026).
corr_author: '1'
date_created: 2026-04-05T22:01:32Z
date_published: 2026-03-18T00:00:00Z
date_updated: 2026-04-07T09:37:57Z
day: '18'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/rdsn-stlq
external_id:
  arxiv:
  - '2512.15260'
file:
- access_level: open_access
  checksum: 339bff9d13486a8028049404988b9b0b
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-07T09:34:31Z
  date_updated: 2026-04-07T09:34:31Z
  file_id: '21667'
  file_name: 2026_PhysicalReviewResearch_Becker.pdf
  file_size: 2131627
  relation: main_file
  success: 1
file_date_updated: 2026-04-07T09:34:31Z
has_accepted_license: '1'
intvolume: '         8'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 7c040762-9f16-11ee-852c-dd79eeee4ab3
  grant_number: F100403
  name: Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions
publication: Physical Review Research
publication_identifier:
  issn:
  - 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Two-body Kapitza-Dirac scattering of one-dimensional ultracold atoms
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21661'
abstract:
- lang: eng
  text: Model checking undiscounted reachability and expected-reward properties on
    Markov decision processes (MDPs) are key for the verification of systems that
    act under uncertainty. Popular algorithms are policy iteration and variants of
    value iteration; in tool competitions, most participants rely on the latter. These
    algorithms generally need worst-case exponential time. However, the problem can
    equally be formulated as a linear programme, solvable in polynomial time. In this
    paper, we give a detailed overview of today’s state-of-the-art algorithms for
    MDP model checking with a focus on performance and correctness. We highlight their
    fundamental differences, and describe various optimizations and implementation
    variants. We experimentally compare floating-point and exact-arithmetic implementations
    of all algorithms on three benchmark sets using two probabilistic model checkers.
    Our results show that (optimistic) value iteration is a sensible default, but
    other algorithms are preferable in specific settings. This paper thereby provides
    a guide for MDP verification practitioners—tool builders and users alike.
acknowledgement: "This research was funded by the European Union’s Horizon 2020 research
  and innovation programme under Marie Skłodowska-Curie grant agreements 101008233
  (MISSION)\r\nand 101034413 (IST-BRIDGE), by the Interreg North Sea project STORM_SAFE,
  by a KI-Starter grant from the Ministerium für Kultur und Wissenschaft NRW, by NWO
  VENI grant no. 639.021.754, and by NWO VIDI grant VI.Vidi.223.110 (TruSTy). Experiments
  were performed with computing resources granted by RWTH Aachen University under
  project rwth1632."
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Arnd
  full_name: Hartmanns, Arnd
  last_name: Hartmanns
- first_name: Sebastian
  full_name: Junges, Sebastian
  last_name: Junges
- first_name: Tim
  full_name: Quatmann, Tim
  last_name: Quatmann
- first_name: Maximilian
  full_name: Weininger, Maximilian
  id: 02ab0197-cc70-11ed-ab61-918e71f56881
  last_name: Weininger
  orcid: 0000-0002-0163-2152
citation:
  ama: Hartmanns A, Junges S, Quatmann T, Weininger M. The revised practitioner’s
    guide to MDP model checking algorithms. <i>International Journal on Software Tools
    for Technology Transfer</i>. 2026. doi:<a href="https://doi.org/10.1007/s10009-026-00848-y">10.1007/s10009-026-00848-y</a>
  apa: Hartmanns, A., Junges, S., Quatmann, T., &#38; Weininger, M. (2026). The revised
    practitioner’s guide to MDP model checking algorithms. <i>International Journal
    on Software Tools for Technology Transfer</i>. Springer Nature. <a href="https://doi.org/10.1007/s10009-026-00848-y">https://doi.org/10.1007/s10009-026-00848-y</a>
  chicago: Hartmanns, Arnd, Sebastian Junges, Tim Quatmann, and Maximilian Weininger.
    “The Revised Practitioner’s Guide to MDP Model Checking Algorithms.” <i>International
    Journal on Software Tools for Technology Transfer</i>. Springer Nature, 2026.
    <a href="https://doi.org/10.1007/s10009-026-00848-y">https://doi.org/10.1007/s10009-026-00848-y</a>.
  ieee: A. Hartmanns, S. Junges, T. Quatmann, and M. Weininger, “The revised practitioner’s
    guide to MDP model checking algorithms,” <i>International Journal on Software
    Tools for Technology Transfer</i>. Springer Nature, 2026.
  ista: Hartmanns A, Junges S, Quatmann T, Weininger M. 2026. The revised practitioner’s
    guide to MDP model checking algorithms. International Journal on Software Tools
    for Technology Transfer.
  mla: Hartmanns, Arnd, et al. “The Revised Practitioner’s Guide to MDP Model Checking
    Algorithms.” <i>International Journal on Software Tools for Technology Transfer</i>,
    Springer Nature, 2026, doi:<a href="https://doi.org/10.1007/s10009-026-00848-y">10.1007/s10009-026-00848-y</a>.
  short: A. Hartmanns, S. Junges, T. Quatmann, M. Weininger, International Journal
    on Software Tools for Technology Transfer (2026).
date_created: 2026-04-05T22:01:32Z
date_published: 2026-03-09T00:00:00Z
date_updated: 2026-04-07T09:52:54Z
day: '09'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/s10009-026-00848-y
ec_funded: 1
has_accepted_license: '1'
keyword:
- Quantitative model checking
- Markov decision process
- Linear programming
- Value iteration
- Policy iteration
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s10009-026-00848-y
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: International Journal on Software Tools for Technology Transfer
publication_identifier:
  eissn:
  - 1433-2787
  issn:
  - 1433-2779
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '21668'
    relation: software
    status: public
scopus_import: '1'
status: public
title: The revised practitioner’s guide to MDP model checking algorithms
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21703'
abstract:
- lang: eng
  text: Altermagnetism has recently emerged as a distinct class of collinear antiferromagnets
    that break time-reversal symmetry, exhibiting a host of novel properties. Applied
    strain has attracted particular attention as a key tuning parameter for altermagnets.
    Although several experimental studies have demonstrated the preparation of single-domain
    states through a combination of applied strain and magnetic field, the route to
    such states remains unclear. Here, we use magneto-optical measurements on single
    crystals of MnTe under applied strain to show that, in contrast to previous reports,
    strain acts primarily to rotate the Néel vector L continuously. Since the orientation
    of L determines the magnetic point group symmetry, this continuous rotation effectively
    tunes the symmetry and its associated physical properties. Furthermore, we demonstrate
    that built-in strain in free-standing crystals is sufficient to pin L into continuous
    textures over millimeter length scales. Together, these results provide guidance
    for future device design and open the door to leveraging the Néel vector orientation
    as a tunable degree of freedom in spintronic applications.
acknowledgement: "This research was primarily funded by the Quantum Materials (KC2202)
  program under the U.S. Department of Energy, Office of Science, Office of Basic
  Energy Sciences, Materials Sciences and Engineering Division under Contract No.
  DE-AC02-05CH11231, which supported the experimental and theoretical work at the
  LBNL and UC Berkeley. N.J.G., R. B. R., and I.I.M.\r\nwere supported by Army Research
  Office under Cooperative Agreement Number W911NF- 22-2-0173. H.M.L.N. and V.S. acknowledge
  funding through the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
  through Grant No. TRR288—422213477, Project No. A10. H.M.L.N. acknowledges financial
  support from the Max Planck Society. Research in Dresden benefits from the environment
  provided by the DFG Cluster of Excellence ctd.qmat (EXC2147, Project ID 390858490)."
article_number: '2604.07653'
article_processing_charge: No
arxiv: 1
author:
- first_name: Alex Liebman-Peláez
  full_name: Alex Liebman-Peláez, Alex Liebman-Peláez
  last_name: Alex Liebman-Peláez
- first_name: Jon
  full_name: Kruppe, Jon
  last_name: Kruppe
- first_name: Resham Babu
  full_name: Regmi, Resham Babu
  last_name: Regmi
- first_name: Nirmal J.
  full_name: Ghimire, Nirmal J.
  last_name: Ghimire
- first_name: Yue
  full_name: Sun, Yue
  last_name: Sun
- first_name: Igor I.
  full_name: Mazin, Igor I.
  last_name: Mazin
- first_name: Hilary M. L.
  full_name: Noad, Hilary M. L.
  last_name: Noad
- first_name: James
  full_name: Analytis, James
  last_name: Analytis
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
- first_name: Joseph
  full_name: Orenstein, Joseph
  last_name: Orenstein
citation:
  ama: Alex Liebman-Peláez AL-P, Kruppe J, Regmi RB, et al. Strain continuously rotates
    the Néel vector in altermagnetic MnTe. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2604.07653">10.48550/arXiv.2604.07653</a>
  apa: Alex Liebman-Peláez, A. L.-P., Kruppe, J., Regmi, R. B., Ghimire, N. J., Sun,
    Y., Mazin, I. I., … Orenstein, J. (n.d.). Strain continuously rotates the Néel
    vector in altermagnetic MnTe. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2604.07653">https://doi.org/10.48550/arXiv.2604.07653</a>
  chicago: Alex Liebman-Peláez, Alex Liebman-Peláez, Jon Kruppe, Resham Babu Regmi,
    Nirmal J. Ghimire, Yue Sun, Igor I. Mazin, Hilary M. L. Noad, James Analytis,
    Veronika Sunko, and Joseph Orenstein. “Strain Continuously Rotates the Néel Vector
    in Altermagnetic MnTe.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2604.07653">https://doi.org/10.48550/arXiv.2604.07653</a>.
  ieee: A. L.-P. Alex Liebman-Peláez <i>et al.</i>, “Strain continuously rotates the
    Néel vector in altermagnetic MnTe,” <i>arXiv</i>. .
  ista: Alex Liebman-Peláez AL-P, Kruppe J, Regmi RB, Ghimire NJ, Sun Y, Mazin II,
    Noad HML, Analytis J, Sunko V, Orenstein J. Strain continuously rotates the Néel
    vector in altermagnetic MnTe. arXiv, 2604.07653.
  mla: Alex Liebman-Peláez, Alex Liebman-Peláez, et al. “Strain Continuously Rotates
    the Néel Vector in Altermagnetic MnTe.” <i>ArXiv</i>, 2604.07653, doi:<a href="https://doi.org/10.48550/arXiv.2604.07653">10.48550/arXiv.2604.07653</a>.
  short: A.L.-P. Alex Liebman-Peláez, J. Kruppe, R.B. Regmi, N.J. Ghimire, Y. Sun,
    I.I. Mazin, H.M.L. Noad, J. Analytis, V. Sunko, J. Orenstein, ArXiv (n.d.).
date_created: 2026-04-10T14:17:21Z
date_published: 2026-04-08T00:00:00Z
date_updated: 2026-05-04T06:27:12Z
day: '08'
department:
- _id: VeSu
doi: 10.48550/arXiv.2604.07653
external_id:
  arxiv:
  - '2604.07653'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2604.07653
month: '04'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Strain continuously rotates the Néel vector in altermagnetic MnTe
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21704'
abstract:
- lang: eng
  text: How functional protein sequences are distributed in sequence space is fundamentally
    important for evolutionary theory and protein design, particularly if a large
    diversity of protein functions are hidden in evolutionarily unexplored areas of
    the sequence space. However, this question is understudied in part because experimental
    and computational studies use extant sequences as a starting point to study sequence
    space. Here, we study whether extant sequences are representative of the entire
    functional sequence space. Across thousands of protein families from vertebrates
    and bacteria we calculate the dimensionality and the volume of sequence space
    occupied by extant homologs. We find that the observed dimensionality and volume
    of extant sequence space are minuscule, many orders of magnitude smaller than
    what we estimated using a model of protein evolution. Simulating sequence evolution
    we then quantify the impact of phylogeny, selection, and epistasis on restricting
    the evolutionary exploration of sequence space. We find that sequence evolution
    from a single common ancestor, or a single point of origin in sequence space,
    is by far the largest limiting factor that reduces the dimensionality and volume
    of extant sequence space. These results indicate that there are vast areas of
    functional sequence space that have not been explored in evolution because of
    the excessive restrictions on natural exploration of the protein sequence space
    imposed by the point of origin effect. We suggest that protein design methods
    that rely on extant sequences may be limited in their ability to discover truly
    novel functions.
acknowledgement: We thank Olga Kalinina for feedback on our manuscript, Vsevolod Kuksin
  for fruitful discussions and Lev Tsarin for participation in the design of our models.
  This work was supported by Japan Science and Technology Agency as part of Adopting
  Sustainable Partnerships for Innovative Research Ecosystem, Grant No. JPMJAP24B2
  (F.A.K. and L.H.I.), and Fonds Zur Förderung der Wissenschaftlichen Forschung Grant
  ESP253-B (O.O.B.)
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Lada H.
  full_name: Isakova, Lada H.
  last_name: Isakova
- first_name: Elizaveta
  full_name: Streltsova, Elizaveta
  id: 57a170da-dc96-11ea-b7c8-ab3565071bf7
  last_name: Streltsova
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Peter K.
  full_name: Vlasov, Peter K.
  last_name: Vlasov
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Isakova LH, Streltsova E, Bochkareva O, Vlasov PK, Kondrashov F. Descent from
    a common ancestor restricts exploration of protein sequence space. <i>Proceedings
    of the National Academy of Sciences</i>. 2026;123(14):e2532018123. doi:<a href="https://doi.org/10.1073/pnas.2532018123">10.1073/pnas.2532018123</a>
  apa: Isakova, L. H., Streltsova, E., Bochkareva, O., Vlasov, P. K., &#38; Kondrashov,
    F. (2026). Descent from a common ancestor restricts exploration of protein sequence
    space. <i>Proceedings of the National Academy of Sciences</i>. National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.2532018123">https://doi.org/10.1073/pnas.2532018123</a>
  chicago: Isakova, Lada H., Elizaveta Streltsova, Olga Bochkareva, Peter K. Vlasov,
    and Fyodor Kondrashov. “Descent from a Common Ancestor Restricts Exploration of
    Protein Sequence Space.” <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences, 2026. <a href="https://doi.org/10.1073/pnas.2532018123">https://doi.org/10.1073/pnas.2532018123</a>.
  ieee: L. H. Isakova, E. Streltsova, O. Bochkareva, P. K. Vlasov, and F. Kondrashov,
    “Descent from a common ancestor restricts exploration of protein sequence space,”
    <i>Proceedings of the National Academy of Sciences</i>, vol. 123, no. 14. National
    Academy of Sciences, p. e2532018123, 2026.
  ista: Isakova LH, Streltsova E, Bochkareva O, Vlasov PK, Kondrashov F. 2026. Descent
    from a common ancestor restricts exploration of protein sequence space. Proceedings
    of the National Academy of Sciences. 123(14), e2532018123.
  mla: Isakova, Lada H., et al. “Descent from a Common Ancestor Restricts Exploration
    of Protein Sequence Space.” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 123, no. 14, National Academy of Sciences, 2026, p. e2532018123, doi:<a href="https://doi.org/10.1073/pnas.2532018123">10.1073/pnas.2532018123</a>.
  short: L.H. Isakova, E. Streltsova, O. Bochkareva, P.K. Vlasov, F. Kondrashov, Proceedings
    of the National Academy of Sciences 123 (2026) e2532018123.
date_created: 2026-04-12T22:01:47Z
date_published: 2026-04-07T00:00:00Z
date_updated: 2026-05-04T06:57:31Z
day: '07'
ddc:
- '570'
department:
- _id: UlWa
doi: 10.1073/pnas.2532018123
external_id:
  pmid:
  - '41915737'
file:
- access_level: open_access
  checksum: 11b7a13a359e302498b2367906093a6b
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T06:46:31Z
  date_updated: 2026-05-04T06:46:31Z
  file_id: '21783'
  file_name: 2026_PNAS_Isakova.pdf
  file_size: 3355016
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T06:46:31Z
has_accepted_license: '1'
intvolume: '       123'
issue: '14'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: e2532018123
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Descent from a common ancestor restricts exploration of protein sequence space
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 123
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21705'
abstract:
- lang: eng
  text: "We report the discovery of ATLAS J101342.5−451656.8 (hereafter ATLAS J1013−4516),
    an 8.56 minute orbital-period mass-transferring AM Canum Venaticorum (AM CVn)
    binary with a mean Gaia magnitude of G = 19.51, identified via periodic variability
    in light curves from the Asteroid Terrestrial-impact Last Alert System (ATLAS)
    of Gaia white dwarf candidates. Follow-up with the Large Lenslet Array Magellan
    Spectrograph shows a helium-dominated accretion disk, and high-speed ULTRACAM
    photometry reveals pronounced primary and secondary eclipses. We construct a decade-long
    timing baseline leveraging light curves from the ATLAS and Gaia surveys, as well
    as the high-speed imagers ULTRACAM on the New Energy Telescope and proto-Lightspeed
    on the Magellan Clay telescope. From this timing baseline, we measure an orbital
    period derivative of P 1.60 0.07 10 = ± × 12 s s−1. Interpreted in the context
    of stable mass transfer, the magnitude and sign of P indicate that the orbital
    evolution is governed by the interplay between gravitationalwave-driven angular-momentum
    losses and mass transfer, directly probing the donor’s structural response to
    mass loss. We constrain the accretor and donor mass based on stable mass-transfer
    arguments assuming angularmomentum loss dominated by gravitational-wave emission,
    allowing us to infer the characteristic gravitational\r\nwave strain of the binary
    for future space-based GW observatories such as the Laser Interferometer Space
    Antenna (LISA). We predict a characteristic strain corresponding to a 4 yr LISA
    signal-to-noise ratio ≳10, establishing ATLAS J1013−4516 as a strong prospective
    LISA source that will probe long-term orbital evolution in the mass-transferring
    regime."
acknowledgement: This work has made use of data from the Asteroid Terrestrial-impact
  Last Alert System (ATLAS) project. The Asteroid Terrestrial-impact Last Alert System
  (ATLAS) project is primarily funded to search for near-Earth asteroids through NASA
  grants NN12AR55G, 80NSSC18K0284, and 80NSSC18K1575; byproducts of the NEO search
  include images and catalogs from the survey area. This work was partially funded
  by Kepler/K2 grant J1944/80NSSC19K0112 and HST GO-15889 and STFC grants ST/T000198/1
  and ST/S006109/1. The ATLAS science products have been made possible through the
  contributions of the University of Hawaii Institute for Astronomy, the Queen’s University
  Belfast, the Space Telescope Science Institute, the South African Astronomical Observatory,
  and the Millennium Institute of Astrophysics (MAS), Chile. VSD and ULTRACAM are
  supported by STFC grant ST/Z000033/1. J.G.M. gratefully acknowledges support from
  the Heising-Simons Foundation and the Pappalardo family through the MIT Pappalardo
  Fellowship in Physics.
article_number: '237'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Emma T.
  full_name: Chickles, Emma T.
  last_name: Chickles
- first_name: Joheen
  full_name: Chakraborty, Joheen
  last_name: Chakraborty
- first_name: Kevin B.
  full_name: Burdge, Kevin B.
  last_name: Burdge
- first_name: Vik S.
  full_name: Dhillon, Vik S.
  last_name: Dhillon
- first_name: Paul
  full_name: Draghis, Paul
  last_name: Draghis
- first_name: Kareem
  full_name: El-Badry, Kareem
  last_name: El-Badry
- first_name: Matthew J.
  full_name: Green, Matthew J.
  last_name: Green
- first_name: Aaron
  full_name: Householder, Aaron
  last_name: Householder
- first_name: Sarah
  full_name: Hughes, Sarah
  last_name: Hughes
- first_name: Christopher
  full_name: Layden, Christopher
  last_name: Layden
- first_name: Stuart P.
  full_name: Littlefair, Stuart P.
  last_name: Littlefair
- first_name: James
  full_name: Munday, James
  last_name: Munday
- first_name: Ingrid
  full_name: Pelisoli, Ingrid
  last_name: Pelisoli
- first_name: Maya S.
  full_name: Redden, Maya S.
  last_name: Redden
- first_name: John
  full_name: Tonry, John
  last_name: Tonry
- first_name: Joannes C
  full_name: van Roestel, Joannes C
  id: 4d122fc8-6083-11f0-87a5-97d68b860333
  last_name: van Roestel
- first_name: Francesco Elio
  full_name: Angile, Francesco Elio
  last_name: Angile
- first_name: Alex J.
  full_name: Brown, Alex J.
  last_name: Brown
- first_name: Noel Castro
  full_name: Segura, Noel Castro
  last_name: Segura
- first_name: Jack
  full_name: Dinsmore, Jack
  last_name: Dinsmore
- first_name: Martin
  full_name: Dyer, Martin
  last_name: Dyer
- first_name: Gabor
  full_name: Furesz, Gabor
  last_name: Furesz
- first_name: Michelle
  full_name: Gabutti, Michelle
  last_name: Gabutti
- first_name: James
  full_name: Garbutt, James
  last_name: Garbutt
- first_name: Juliana
  full_name: García-Mejía, Juliana
  last_name: García-Mejía
- first_name: Daniel
  full_name: Jarvis, Daniel
  last_name: Jarvis
- first_name: Mark R.
  full_name: Kennedy, Mark R.
  last_name: Kennedy
- first_name: Paul
  full_name: Kerry, Paul
  last_name: Kerry
- first_name: James
  full_name: Mccormac, James
  last_name: Mccormac
- first_name: Geoffrey
  full_name: Mo, Geoffrey
  last_name: Mo
- first_name: Dave
  full_name: Osip, Dave
  last_name: Osip
- first_name: Steven
  full_name: Parsons, Steven
  last_name: Parsons
- first_name: Eleanor
  full_name: Pike, Eleanor
  last_name: Pike
- first_name: John J.
  full_name: Piotrowski, John J.
  last_name: Piotrowski
- first_name: Roger W.
  full_name: Romani, Roger W.
  last_name: Romani
- first_name: David
  full_name: Sahman, David
  last_name: Sahman
- first_name: Rob
  full_name: Simcoe, Rob
  last_name: Simcoe
citation:
  ama: Chickles ET, Chakraborty J, Burdge KB, et al. An eclipsing 8.56 minutes orbital
    period mass-transferring binary. <i>The Astrophysical Journal</i>. 2026;1000(2).
    doi:<a href="https://doi.org/10.3847/1538-4357/ae4871">10.3847/1538-4357/ae4871</a>
  apa: Chickles, E. T., Chakraborty, J., Burdge, K. B., Dhillon, V. S., Draghis, P.,
    El-Badry, K., … Simcoe, R. (2026). An eclipsing 8.56 minutes orbital period mass-transferring
    binary. <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae4871">https://doi.org/10.3847/1538-4357/ae4871</a>
  chicago: Chickles, Emma T., Joheen Chakraborty, Kevin B. Burdge, Vik S. Dhillon,
    Paul Draghis, Kareem El-Badry, Matthew J. Green, et al. “An Eclipsing 8.56 Minutes
    Orbital Period Mass-Transferring Binary.” <i>The Astrophysical Journal</i>. IOP
    Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae4871">https://doi.org/10.3847/1538-4357/ae4871</a>.
  ieee: E. T. Chickles <i>et al.</i>, “An eclipsing 8.56 minutes orbital period mass-transferring
    binary,” <i>The Astrophysical Journal</i>, vol. 1000, no. 2. IOP Publishing, 2026.
  ista: Chickles ET, Chakraborty J, Burdge KB, Dhillon VS, Draghis P, El-Badry K,
    Green MJ, Householder A, Hughes S, Layden C, Littlefair SP, Munday J, Pelisoli
    I, Redden MS, Tonry J, van Roestel JC, Angile FE, Brown AJ, Segura NC, Dinsmore
    J, Dyer M, Furesz G, Gabutti M, Garbutt J, García-Mejía J, Jarvis D, Kennedy MR,
    Kerry P, Mccormac J, Mo G, Osip D, Parsons S, Pike E, Piotrowski JJ, Romani RW,
    Sahman D, Simcoe R. 2026. An eclipsing 8.56 minutes orbital period mass-transferring
    binary. The Astrophysical Journal. 1000(2), 237.
  mla: Chickles, Emma T., et al. “An Eclipsing 8.56 Minutes Orbital Period Mass-Transferring
    Binary.” <i>The Astrophysical Journal</i>, vol. 1000, no. 2, 237, IOP Publishing,
    2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae4871">10.3847/1538-4357/ae4871</a>.
  short: E.T. Chickles, J. Chakraborty, K.B. Burdge, V.S. Dhillon, P. Draghis, K.
    El-Badry, M.J. Green, A. Householder, S. Hughes, C. Layden, S.P. Littlefair, J.
    Munday, I. Pelisoli, M.S. Redden, J. Tonry, J.C. van Roestel, F.E. Angile, A.J.
    Brown, N.C. Segura, J. Dinsmore, M. Dyer, G. Furesz, M. Gabutti, J. Garbutt, J.
    García-Mejía, D. Jarvis, M.R. Kennedy, P. Kerry, J. Mccormac, G. Mo, D. Osip,
    S. Parsons, E. Pike, J.J. Piotrowski, R.W. Romani, D. Sahman, R. Simcoe, The Astrophysical
    Journal 1000 (2026).
date_created: 2026-04-12T22:01:47Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-05-04T06:37:12Z
day: '01'
ddc:
- '520'
department:
- _id: IlCa
doi: 10.3847/1538-4357/ae4871
external_id:
  arxiv:
  - '2601.07925'
file:
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  date_created: 2026-05-04T06:36:00Z
  date_updated: 2026-05-04T06:36:00Z
  file_id: '21782'
  file_name: 2026_AstrophysicalJournal_Chickles.pdf
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  success: 1
file_date_updated: 2026-05-04T06:36:00Z
has_accepted_license: '1'
intvolume: '      1000'
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: An eclipsing 8.56 minutes orbital period mass-transferring binary
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1000
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21707'
abstract:
- lang: eng
  text: Structural and functional differences between brain hemispheres are a common
    feature of animal nervous systems with reduced bilateral asymmetry often linked
    to impaired cognitive performance. How neuronal left-right asymmetry is initiated
    and integrated into a bilaterally symmetrical ground pattern is poorly understood.
    Here, we show that the directional asymmetry of a Drosophila central brain circuit
    originates from axonal interactions of two types of bilateral pioneer neurons.
    Subsequent recruitment of neighboring neurons into the asymmetric neuropil primordium
    results in hemisphere-specific microcircuits. Circuit lateralization requires
    dynamic expression of the cell adhesion molecule Fasciclin 2 to maintain structural
    plasticity in axonal remodeling. Reduced circuit asymmetry following cell type–specific
    Fasciclin 2 manipulation affects adult brain function. These results reveal an
    unexpected degree of developmental plasticity of late-born Drosophila neurons
    in the formation of a circuit node via the lateralized recruitment of symmetric
    circuit components.
acknowledgement: "We thank I. Salecker (Flybow), B. Altenhein (Fas2-Gal4Mz507), A.
  Nose (UAS-intra- and extra-Fas2::YFP), and C. S. Goodman (UAS-Fas2PEST+/−), as well
  as the Bloomington Stock Center for providing materials and fly stocks. We thank
  S. Waddell and the lab, especially B. Senapati, for providing the opportunity to
  conduct memory experiments at the CNCB, University of Oxford, and for supervision
  and discussions during this period. We also thank W. Kallina, S. Ilgerl, D. Bartel,
  A. Grimm, and A. Litin for technical support and the Hummel Lab for stimulating
  discussions and critical comments on the manuscript. We acknowledge the early exploratory
  work of A. Mattia, S. Trkulja, C. Schönherr, S. Bogner, B. Simpson, L. Tomasek,
  H. Roth, H. Vokač, R. Gredler, F. Kapelari, T. Kolarova, C. Ignitsch, Á. Bautista-Soldevila,
  and M. Kassem.\r\nThis research was funded by the University of Vienna, the Vienna
  Doctoral School Cognition, Behaviour and Neuroscience (uni:docs fellowship) (to
  J.W.M.) and by the Austrian Science Fund (FWF) (Cluster of Excellence Neuronal Circuits
  in Health and Disease, grant DOI 10.55776/COE16; https://www.fwf.ac.at/en/research-radar/10.55776/COE16)
  (to T.H.). For open access purposes, the author has applied a CC BY public copyright
  license to any author-accepted manuscript version arising from this submission."
article_number: eaea6020
article_processing_charge: Yes
article_type: original
author:
- first_name: Johann W.
  full_name: Markovitsch, Johann W.
  last_name: Markovitsch
- first_name: Daniel
  full_name: Mitić, Daniel
  last_name: Mitić
- first_name: Alisa
  full_name: Del Pilar Jiménez García, Alisa
  last_name: Del Pilar Jiménez García
- first_name: Alsberga
  full_name: Zane, Alsberga
  id: 60f7509a-f652-11ea-9d86-b963d6490d7c
  last_name: Zane
  orcid: 0009-0003-0415-7603
- first_name: Sarah
  full_name: Kainz, Sarah
  last_name: Kainz
- first_name: Rashmit
  full_name: Kaur, Rashmit
  last_name: Kaur
- first_name: Thomas
  full_name: Hummel, Thomas
  last_name: Hummel
citation:
  ama: Markovitsch JW, Mitić D, Del Pilar Jiménez García A, et al. Sequential formation
    of Drosophila circuit asymmetry via prolonged structural plasticity. <i>Science
    Advances</i>. 2026;12(13). doi:<a href="https://doi.org/10.1126/sciadv.aea6020">10.1126/sciadv.aea6020</a>
  apa: Markovitsch, J. W., Mitić, D., Del Pilar Jiménez García, A., Zane, A., Kainz,
    S., Kaur, R., &#38; Hummel, T. (2026). Sequential formation of Drosophila circuit
    asymmetry via prolonged structural plasticity. <i>Science Advances</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/sciadv.aea6020">https://doi.org/10.1126/sciadv.aea6020</a>
  chicago: Markovitsch, Johann W., Daniel Mitić, Alisa Del Pilar Jiménez García, Alsberga
    Zane, Sarah Kainz, Rashmit Kaur, and Thomas Hummel. “Sequential Formation of Drosophila
    Circuit Asymmetry via Prolonged Structural Plasticity.” <i>Science Advances</i>.
    American Association for the Advancement of Science, 2026. <a href="https://doi.org/10.1126/sciadv.aea6020">https://doi.org/10.1126/sciadv.aea6020</a>.
  ieee: J. W. Markovitsch <i>et al.</i>, “Sequential formation of Drosophila circuit
    asymmetry via prolonged structural plasticity,” <i>Science Advances</i>, vol.
    12, no. 13. American Association for the Advancement of Science, 2026.
  ista: Markovitsch JW, Mitić D, Del Pilar Jiménez García A, Zane A, Kainz S, Kaur
    R, Hummel T. 2026. Sequential formation of Drosophila circuit asymmetry via prolonged
    structural plasticity. Science Advances. 12(13), eaea6020.
  mla: Markovitsch, Johann W., et al. “Sequential Formation of Drosophila Circuit
    Asymmetry via Prolonged Structural Plasticity.” <i>Science Advances</i>, vol.
    12, no. 13, eaea6020, American Association for the Advancement of Science, 2026,
    doi:<a href="https://doi.org/10.1126/sciadv.aea6020">10.1126/sciadv.aea6020</a>.
  short: J.W. Markovitsch, D. Mitić, A. Del Pilar Jiménez García, A. Zane, S. Kainz,
    R. Kaur, T. Hummel, Science Advances 12 (2026).
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-27T00:00:00Z
date_updated: 2026-05-04T09:18:06Z
day: '27'
ddc:
- '570'
department:
- _id: MiSi
- _id: GradSch
doi: 10.1126/sciadv.aea6020
file:
- access_level: open_access
  checksum: 3eed470fe73e53d2a8d55d6fba6934e3
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T09:16:36Z
  date_updated: 2026-05-04T09:16:36Z
  file_id: '21786'
  file_name: 2026_ScienceAdv_Markovitsch.pdf
  file_size: 11101140
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T09:16:36Z
has_accepted_license: '1'
intvolume: '        12'
issue: '13'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sequential formation of Drosophila circuit asymmetry via prolonged structural
  plasticity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21708'
abstract:
- lang: eng
  text: On October 4, 2023, a proglacial lake named the South Lhonak lake was the
    source of a catastrophic Glacier Lake Outburst Flood (GLOF) in the Teesta river
    basin area, resulting in 24 fatalities and leaving over 70 persons missing. The
    GLOF also destroyed 13 bridges and a major hydropower plant in the Chungthang
    region. Over 60,000 individuals in four districts of Sikkim were impacted by this
    GLOF event. This study examines the factors that led to the GLOF event. Our study
    shows that the cause of this GLOF was initiated by a landslide, that dumped a
    substantial amount (~ 38.31 million m3) of debris into the South Lhonak Lake.
    Furthermore, the glacier that was connected to the lake, lost a big chunk of ice
    mass (~ 7 million m3) due to calving. The combination of these two processes led
    to the collapse of the left lateral moraine that consequently generated flood
    waves which breached the terminal moraine dam of the lake. We recommend monitoring
    land subsidence and calving events for large proglacial lakes to prevent the disastrous
    consequences of such GLOFs in the future.
acknowledgement: This work was carried out independently without the support of any
  funding agency or sponsors. The authors thank the SARPROZ team for providing an
  evaluation license for the MTInSAR processing software.
article_number: '9741'
article_processing_charge: Yes
article_type: original
author:
- first_name: Litan Kumar
  full_name: Mohanty, Litan Kumar
  last_name: Mohanty
- first_name: Prateek
  full_name: Gantayat, Prateek
  id: 02734268-3e8d-11ef-80a1-cec4a088d004
  last_name: Gantayat
- first_name: Ankur
  full_name: Dixit, Ankur
  last_name: Dixit
- first_name: Manik
  full_name: Das Adhikari, Manik
  last_name: Das Adhikari
- first_name: Rahul
  full_name: Biswas, Rahul
  last_name: Biswas
- first_name: Vivek Kumar
  full_name: Singh, Vivek Kumar
  last_name: Singh
citation:
  ama: Mohanty LK, GANTAYAT P, Dixit A, Das Adhikari M, Biswas R, Singh VK. Sequence
    of events that led to the South Lhonak lake outburst flood in Sikkim, India. <i>Scientific
    Reports</i>. 2026;16. doi:<a href="https://doi.org/10.1038/s41598-026-35895-7">10.1038/s41598-026-35895-7</a>
  apa: Mohanty, L. K., GANTAYAT, P., Dixit, A., Das Adhikari, M., Biswas, R., &#38;
    Singh, V. K. (2026). Sequence of events that led to the South Lhonak lake outburst
    flood in Sikkim, India. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-026-35895-7">https://doi.org/10.1038/s41598-026-35895-7</a>
  chicago: Mohanty, Litan Kumar, PRATEEK GANTAYAT, Ankur Dixit, Manik Das Adhikari,
    Rahul Biswas, and Vivek Kumar Singh. “Sequence of Events That Led to the South
    Lhonak Lake Outburst Flood in Sikkim, India.” <i>Scientific Reports</i>. Springer
    Nature, 2026. <a href="https://doi.org/10.1038/s41598-026-35895-7">https://doi.org/10.1038/s41598-026-35895-7</a>.
  ieee: L. K. Mohanty, P. GANTAYAT, A. Dixit, M. Das Adhikari, R. Biswas, and V. K.
    Singh, “Sequence of events that led to the South Lhonak lake outburst flood in
    Sikkim, India,” <i>Scientific Reports</i>, vol. 16. Springer Nature, 2026.
  ista: Mohanty LK, GANTAYAT P, Dixit A, Das Adhikari M, Biswas R, Singh VK. 2026.
    Sequence of events that led to the South Lhonak lake outburst flood in Sikkim,
    India. Scientific Reports. 16, 9741.
  mla: Mohanty, Litan Kumar, et al. “Sequence of Events That Led to the South Lhonak
    Lake Outburst Flood in Sikkim, India.” <i>Scientific Reports</i>, vol. 16, 9741,
    Springer Nature, 2026, doi:<a href="https://doi.org/10.1038/s41598-026-35895-7">10.1038/s41598-026-35895-7</a>.
  short: L.K. Mohanty, P. GANTAYAT, A. Dixit, M. Das Adhikari, R. Biswas, V.K. Singh,
    Scientific Reports 16 (2026).
corr_author: '1'
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-24T00:00:00Z
date_updated: 2026-05-04T07:54:53Z
day: '24'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1038/s41598-026-35895-7
external_id:
  pmid:
  - '41876546'
file:
- access_level: open_access
  checksum: cf13f61c38609ce6518d74562319c35f
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T07:24:59Z
  date_updated: 2026-05-04T07:24:59Z
  file_id: '21785'
  file_name: 2026_ScienceAdv_Mohanty.pdf
  file_size: 17406006
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T07:24:59Z
has_accepted_license: '1'
intvolume: '        16'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Scientific Reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sequence of events that led to the South Lhonak lake outburst flood in Sikkim,
  India
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2026'
...
