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4101 Publications

2016 | Research Data Reference | IST-REx-ID: 9873
Quantification of the growth rate reduction as a consequence of age-specific mortality
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, (2016).
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2016 | Journal Article | IST-REx-ID: 1518 | OA
Efficient strategies for calculating blockwise likelihoods under the coalescent
K. Lohse, M. Chmelik, S. Martin, N.H. Barton, Genetics 202 (2016) 775–786.
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2016 | Journal Article | IST-REx-ID: 1331 | OA
Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress
P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian, A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology 172 (2016) 1249–1258.
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2016 | Journal Article | IST-REx-ID: 1252 | OA
Inducing a map on homology from a correspondence
S. Harker, H. Kokubu, K. Mischaikow, P. Pilarczyk, Proceedings of the American Mathematical Society 144 (2016) 1787–1801.
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2016 | Journal Article | IST-REx-ID: 1420 | OA
A general approximation for the dynamics of quantitative traits
K. Bodova, G. Tkačik, N.H. Barton, Genetics 202 (2016) 1523–1548.
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2016 | Conference Paper | IST-REx-ID: 1068 | OA
Conditionally optimal algorithms for generalized Büchi Games
K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
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2016 | Journal Article | IST-REx-ID: 1262 | OA
Elevated virulence of an emerging viral genotype as a driver of honeybee loss
D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).
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2016 | Research Data Reference | IST-REx-ID: 9704 | OA
Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss
D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, (2016).
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2016 | Journal Article | IST-REx-ID: 1197 | OA
Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, PLoS Computational Biology 12 (2016).
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2016 | Journal Article | IST-REx-ID: 5749 | OA
Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2016) 770–782.
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2016 | Research Data Reference | IST-REx-ID: 9720 | OA
Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees
D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9710 | OA View | Files available | DOI | Download Published Version (ext.)
 
 
2016 | Research Data Reference | IST-REx-ID: 9864 | OA View | Files available | DOI | Download Published Version (ext.)
 
2016 | Conference Paper | IST-REx-ID: 1115 | OA
Efficient single sideband microwave to optical conversion using a LiNbO₃ WGM-resonator
A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, IEEE, 2016.
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2016 | Conference Paper | IST-REx-ID: 1140 | OA
Model and objective separation with conditional lower bounds: disjunction is harder than conjunction
K. Chatterjee, W. Dvoák, M.H. Henzinger, V. Loitzenbauer, in:, Proceedings of the 31st Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2016, pp. 197–206.
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2016 | Journal Article | IST-REx-ID: 1321 | OA
Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes
A.F. Leithner, A. Eichner, J. Müller, A. REVERSAT, M. Brown, J. Schwarz, J. Merrin, D. De Gorter, F.K. Schur, J. Bayerl, I. de Vries, S. Wieser, R. Hauschild, F. Lai, M. Moser, D. Kerjaschki, K. Rottner, V. Small, T. Stradal, M.K. Sixt, Nature Cell Biology 18 (2016) 1253–1259.
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2016 | Journal Article | IST-REx-ID: 1183 | OA
Impaired amino acid transport at the blood brain barrier is a cause of autism spectrum disorder
Tarlungeanu D-C, Deliu E, Dotter C, Kara M, Janiesch P, Scalise M, Galluccio M, Tesulov M, Morelli E, Sönmez F, Bilgüvar K, Ohgaki R, Kanai Y, Johansen A, Esharif S, Ben Omran T, Topcu M, Schlessinger A, Indiveri C, Duncan K, Caglayan A, Günel M, Gleeson J, Novarino G. 2016. Impaired amino acid transport at the blood brain barrier is a cause of autism spectrum disorder. Cell. 167(6), 1481–1494.
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2016 | Journal Article | IST-REx-ID: 1100 | OA
Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation
K. Sako, S. Pradhan, V. Barone, Á. Inglés Prieto, P. Mueller, V. Ruprecht, D. Capek, S. Galande, H.L. Janovjak, C.-P.J. Heisenberg, Cell Reports 16 (2016) 866–877.
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2016 | Conference Paper | IST-REx-ID: 1437 | OA
Algorithms for algebraic path properties in concurrent systems of constant treewidth components
K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, ACM, 2016, pp. 733–747.
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2016 | Conference Paper | IST-REx-ID: 1386 | OA
Termination analysis of probabilistic programs through Positivstellensatz's
K. Chatterjee, H. Fu, A.K. Goharshady, in:, Springer, 2016, pp. 3–22.
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2015 | Journal Article | IST-REx-ID: 802
Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
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2015 | Journal Article | IST-REx-ID: 473 | OA
Derivation of nonlinear gibbs measures from many-body quantum mechanics
M. Lewin, P. Nam, N. Rougerie, Journal de l’Ecole Polytechnique - Mathematiques 2 (2015) 65–115.
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2015 | Journal Article | IST-REx-ID: 477
The serotonin receptor 5-HT7R regulates the morphology and migratory properties of dendritic cells
K. Holst, D. Guseva, S. Schindler, M.K. Sixt, A. Braun, H. Chopra, O. Pabst, E. Ponimaskin, Journal of Cell Science 128 (2015) 2866–2880.
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2015 | Journal Article | IST-REx-ID: 523 | OA
Looking at mean-payoff and total-payoff through windows
K. Chatterjee, L. Doyen, M. Randour, J. Raskin, Information and Computation 242 (2015) 25–52.
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2015 | Journal Article | IST-REx-ID: 524 | OA
Qualitative analysis of concurrent mean payoff games
K. Chatterjee, R. Ibsen-Jensen, Information and Computation 242 (2015) 2–24.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2015 | Journal Article | IST-REx-ID: 532
EIN2-directed translational regulation of ethylene signaling in arabidopsis
W. Li, M. Ma, Y. Feng, H. Li, Y. Wang, Y. Ma, M. Li, F. An, H. Guo, Cell 163 (2015) 670–683.
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2015 | Technical Report | IST-REx-ID: 5429 | OA
Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5430 | OA
Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5431 | OA
The patience of concurrent stochastic games with safety and reachability objectives
K. Chatterjee, R. Ibsen-Jensen, K. Hansen, The Patience of Concurrent Stochastic Games with Safety and Reachability Objectives, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5432 | OA
The complexity of evolutionary games on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary Games on Graphs, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5435 | OA
Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
View | Files available | DOI
 
2015 | Technical Report | IST-REx-ID: 5436 | OA
Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5437 | OA
Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs, IST Austria, 2015.
View | Files available | DOI
 
2015 | Technical Report | IST-REx-ID: 5438 | OA
Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, Edit Distance for Pushdown Automata, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5439 | OA
The target discounted-sum problem
U. Boker, T.A. Henzinger, J. Otop, The Target Discounted-Sum Problem, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5440 | OA
The complexity of evolutionary games on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary Games on Graphs, IST Austria, 2015.
View | Files available | DOI
 
2015 | Technical Report | IST-REx-ID: 5441 | OA
Algorithms for algebraic path properties in concurrent systems of constant treewidth components
K. Chatterjee, R. Ibsen-Jensen, A.K. Goharshady, A. Pavlogiannis, Algorithms for Algebraic Path Properties in Concurrent Systems of Constant Treewidth Components, IST Austria, 2015.
View | Files available | DOI
 
2015 | Technical Report | IST-REx-ID: 5443 | OA
A symbolic SAT-based algorithm for almost-sure reachability with small strategies in POMDPs
K. Chatterjee, M. Chmelik, J. Davies, A Symbolic SAT-Based Algorithm for Almost-Sure Reachability with Small Strategies in POMDPs, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5444 | OA
Reconstructing robust phylogenies of metastatic cancers
J. Reiter, A. Makohon-Moore, J. Gerold, I. Bozic, K. Chatterjee, C. Iacobuzio-Donahue, B. Vogelstein, M. Nowak, Reconstructing Robust Phylogenies of Metastatic Cancers, IST Austria, 2015.
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2015 | Journal Article | IST-REx-ID: 10794 | OA
Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study
F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
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2015 | Conference Paper | IST-REx-ID: 10796
The value 1 problem under finite-memory strategies for concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, in:, Proceedings of the Twenty-Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, 2015, pp. 1018–1029.
View | DOI | arXiv
 
2015 | Journal Article | IST-REx-ID: 1533
Segmentation over detection via optimal sparse reconstructions
W. Xia, C. Domokos, J. Xiong, L. Cheong, S. Yan, IEEE Transactions on Circuits and Systems for Video Technology 25 (2015) 1295–1308.
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2015 | Journal Article | IST-REx-ID: 1534 | OA
Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism
H. Wang, K. Yang, J. Zou, L. Zhu, Z. Xie, M. Morita, M. Tasaka, J. Friml, E. Grotewold, T. Beeckman, S. Vanneste, F. Sack, J. Le, Nature Communications 6 (2015).
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2015 | Journal Article | IST-REx-ID: 1535 | OA
Cav1.3 channels as key regulators of neuron-like firings and catecholamine release in chromaffin cells
D.H. Vandael, A. Marcantoni, E. Carbone, Current Molecular Pharmacology 8 (2015) 149–161.
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2015 | Journal Article | IST-REx-ID: 1536
Asymmetric localizations of the ABC transporter PaPDR1 trace paths of directional strigolactone transport
J. Sasse, S. Simon, C. Gübeli, G. Liu, X. Cheng, J. Friml, H. Bouwmeester, E. Martinoia, L. Borghi, Current Biology 25 (2015) 647–655.
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2015 | Journal Article | IST-REx-ID: 1537 | OA
Cortical contractility triggers a stochastic switch to fast amoeboid cell motility
V. Ruprecht, S. Wieser, A. Callan Jones, M. Smutny, H. Morita, K. Sako, V. Barone, M. Ritsch Marte, M.K. Sixt, R. Voituriez, C.-P.J. Heisenberg, Cell 160 (2015) 673–685.
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2015 | Journal Article | IST-REx-ID: 1538 | OA
Iterative experiment design guides the characterization of a light-inducible gene expression circuit
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, J. Lygeros, PNAS 112 (2015) 8148–8153.
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2015 | Journal Article | IST-REx-ID: 1539 | OA View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1540
The importance of localized auxin production for morphogenesis of reproductive organs and embryos in Arabidopsis
H. Robert, L. Crhák Khaitová, S. Mroue, E. Benková, Journal of Experimental Botany 66 (2015) 5029–5042.
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