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4164 Publications
2022 | Journal Article | IST-REx-ID: 10945 |

pH-dependent coloring of combination effect pigments with anthocyanins from Brassica oleracea var. capitata F. rubra
M.O. Çoruh, G. Gündüz, Ü. Çolak, B. Maviş, Colorants 1 (2022) 149–164.
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M.O. Çoruh, G. Gündüz, Ü. Çolak, B. Maviş, Colorants 1 (2022) 149–164.
2022 | Thesis | IST-REx-ID: 11128 |

Genetic basis of flower colour as a model for adaptive evolution
L. Matejovicova, Genetic Basis of Flower Colour as a Model for Adaptive Evolution, ISTA, 2022.
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L. Matejovicova, Genetic Basis of Flower Colour as a Model for Adaptive Evolution, ISTA, 2022.
2022 | Journal Article | IST-REx-ID: 11135 |

On the operator norm of a Hermitian random matrix with correlated entries
J. Reker, Random Matrices: Theory and Applications (2022).
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J. Reker, Random Matrices: Theory and Applications (2022).
2022 | Journal Article | IST-REx-ID: 11142
Enhanced thermoelectric performance in SnTe due to the energy filtering effect introduced by Bi2O3
T. Hong, C. Guo, D. Wang, B. Qin, C. Chang, X. Gao, L.D. Zhao, Materials Today Energy 25 (2022).
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| DOI
T. Hong, C. Guo, D. Wang, B. Qin, C. Chang, X. Gao, L.D. Zhao, Materials Today Energy 25 (2022).
2022 | Journal Article | IST-REx-ID: 11143 |

Developmentally regulated impairment of parvalbumin interneuron synaptic transmission in an experimental model of Dravet syndrome
K. Kaneko, C. Currin, K.M. Goff, E.R. Wengert, A. Somarowthu, T.P. Vogels, E.M. Goldberg, Cell Reports 38 (2022).
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K. Kaneko, C. Currin, K.M. Goff, E.R. Wengert, A. Somarowthu, T.P. Vogels, E.M. Goldberg, Cell Reports 38 (2022).
2022 | Journal Article | IST-REx-ID: 11144
High thermoelectric performance realized through manipulating layered phonon-electron decoupling
L. Su, D. Wang, S. Wang, B. Qin, Y. Wang, Y. Qin, Y. Jin, C. Chang, L.D. Zhao, Science 375 (2022) 1385–1389.
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L. Su, D. Wang, S. Wang, B. Qin, Y. Wang, Y. Qin, Y. Jin, C. Chang, L.D. Zhao, Science 375 (2022) 1385–1389.
2022 | Conference Paper | IST-REx-ID: 11180 |

Multi-queues can be state-of-the-art priority schedulers
A. Postnikova, N. Koval, G. Nadiradze, D.-A. Alistarh, in:, Proceedings of the 27th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2022, pp. 353–367.
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A. Postnikova, N. Koval, G. Nadiradze, D.-A. Alistarh, in:, Proceedings of the 27th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2022, pp. 353–367.
2022 | Journal Article | IST-REx-ID: 11182 |

Quantifying the probing and selection of microenvironmental pores by motile immune cells
J. Kroll, M.J.A. Ruiz-Fernandez, M.B. Braun, J. Merrin, J. Renkawitz, Current Protocols 2 (2022).
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J. Kroll, M.J.A. Ruiz-Fernandez, M.B. Braun, J. Merrin, J. Renkawitz, Current Protocols 2 (2022).
2022 | Conference Paper | IST-REx-ID: 11183 |

Beyond distributed subgraph detection: Induced subgraphs, multicolored problems and graph parameters
A. Nikabadi, J. Korhonen, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
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A. Nikabadi, J. Korhonen, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
2022 | Conference Paper | IST-REx-ID: 11184 |

Fast graphical population protocols
D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
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D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
2022 | Conference Paper | IST-REx-ID: 11185 |

Approximating the bundled crossing number
A.M. Arroyo Guevara, S. Felsner, in:, WALCOM 2022: Algorithms and Computation, Springer Nature, 2022, pp. 383–395.
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A.M. Arroyo Guevara, S. Felsner, in:, WALCOM 2022: Algorithms and Computation, Springer Nature, 2022, pp. 383–395.
2022 | Journal Article | IST-REx-ID: 11186 |

Large deviations in random latin squares
M.A. Kwan, A. Sah, M. Sawhney, Bulletin of the London Mathematical Society (2022).
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M.A. Kwan, A. Sah, M. Sawhney, Bulletin of the London Mathematical Society (2022).
2022 | Journal Article | IST-REx-ID: 11187 |

Unlocking capacities of genomics for the COVID-19 response and future pandemics
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TTY, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. 2022. Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nature Methods. 19(4), 374–380.
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Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TTY, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. 2022. Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nature Methods. 19(4), 374–380.
2022 | Thesis | IST-REx-ID: 11196
Nanoarchitecture of hippocampal mossy fiber-CA3 pyramidal neuron synapses
O. Kim, Nanoarchitecture of Hippocampal Mossy Fiber-CA3 Pyramidal Neuron Synapses, ISTA, 2022.
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O. Kim, Nanoarchitecture of Hippocampal Mossy Fiber-CA3 Pyramidal Neuron Synapses, ISTA, 2022.
2022 | Conference Paper | IST-REx-ID: 11331 |

Narwhal and Tusk: A DAG-based mempool and efficient BFT consensus
G. Danezis, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, in:, Proceedings of the 17th European Conference on Computer Systems, Association for Computing Machinery, 2022, pp. 34–50.
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G. Danezis, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, in:, Proceedings of the 17th European Conference on Computer Systems, Association for Computing Machinery, 2022, pp. 34–50.
2022 | Journal Article | IST-REx-ID: 11337 |

Entanglement and precession in two-dimensional dynamical quantum phase transitions
S. De Nicola, A. Michailidis, M. Serbyn, Physical Review B 105 (2022).
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S. De Nicola, A. Michailidis, M. Serbyn, Physical Review B 105 (2022).
2022 | Journal Article | IST-REx-ID: 11339 |

Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells
G. Glover, M. Voliotis, U. Łapińska, B.M. Invergo, D. Soanes, P. O’Neill, K. Moore, N. Nikolic, P. Petrov, D.S. Milner, S. Roy, K. Heesom, T.A. Richards, K. Tsaneva-Atanasova, S. Pagliara, Communications Biology 5 (2022).
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| PubMed | Europe PMC
G. Glover, M. Voliotis, U. Łapińska, B.M. Invergo, D. Soanes, P. O’Neill, K. Moore, N. Nikolic, P. Petrov, D.S. Milner, S. Roy, K. Heesom, T.A. Richards, K. Tsaneva-Atanasova, S. Pagliara, Communications Biology 5 (2022).
2022 | Journal Article | IST-REx-ID: 11340 |

Like-charge attraction at the nanoscale: Ground-state correlations and water destructuring
I. Palaia, A. Goyal, E. Del Gado, L. Šamaj, E. Trizac, Journal of Physical Chemistry B 126 (2022) 3143–3149.
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I. Palaia, A. Goyal, E. Del Gado, L. Šamaj, E. Trizac, Journal of Physical Chemistry B 126 (2022) 3143–3149.
2022 | Journal Article | IST-REx-ID: 11344 |

Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia
N. Dranenko, M. Tutukina, M. Gelfand, F. Kondrashov, O. Bochkareva, Scientific Reports 12 (2022).
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N. Dranenko, M. Tutukina, M. Gelfand, F. Kondrashov, O. Bochkareva, Scientific Reports 12 (2022).
2022 | Journal Article | IST-REx-ID: 10284 |

Early queen infection shapes developmental dynamics and induces long-term disease protection in incipient ant colonies
B.E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, S. Cremer, Ecology Letters 25 (2022) 89–100.
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B.E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, S. Cremer, Ecology Letters 25 (2022) 89–100.
2022 | Journal Article | IST-REx-ID: 9311 |

Finite-memory strategies in POMDPs with long-run average objectives
K. Chatterjee, R.J. Saona Urmeneta, B. Ziliotto, Mathematics of Operations Research 47 (2022) 100–119.
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K. Chatterjee, R.J. Saona Urmeneta, B. Ziliotto, Mathematics of Operations Research 47 (2022) 100–119.
2022 | Journal Article | IST-REx-ID: 9977 |

Resurgence analysis of quantum invariants of Seifert fibered homology spheres
W. Mistegaard, J.E. Andersen, Journal of the London Mathematical Society 105 (2022) 709–764.
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| arXiv
W. Mistegaard, J.E. Andersen, Journal of the London Mathematical Society 105 (2022) 709–764.
2022 | Journal Article | IST-REx-ID: 11353 |

Dissipative quantum feedback in measurements using a parametrically coupled microcavity
L. Qiu, G. Huang, I. Shomroni, J. Pan, P. Seidler, T.J. Kippenberg, PRX Quantum 3 (2022).
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L. Qiu, G. Huang, I. Shomroni, J. Pan, P. Seidler, T.J. Kippenberg, PRX Quantum 3 (2022).
2022 | Journal Article | IST-REx-ID: 11354 |

The Dirichlet–Ferguson diffusion on the space of probability measures over a closed Riemannian manifold
L. Dello Schiavo, Annals of Probability 50 (2022) 591–648.
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L. Dello Schiavo, Annals of Probability 50 (2022) 591–648.
2022 | Journal Article | IST-REx-ID: 11379 |

Spontaneous gully-polarized quantum hall states in ABA trilayer graphene
F. Winterer, A.M. Seiler, A. Ghazaryan, F.R. Geisenhof, K. Watanabe, T. Taniguchi, M. Serbyn, R.T. Weitz, Nano Letters 22 (2022) 3317–3322.
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F. Winterer, A.M. Seiler, A. Ghazaryan, F.R. Geisenhof, K. Watanabe, T. Taniguchi, M. Serbyn, R.T. Weitz, Nano Letters 22 (2022) 3317–3322.
2022 | Journal Article | IST-REx-ID: 10652 |

Constraints on probing quantum coherence to infer gravitational entanglement
O. Hosten, Physical Review Research 4 (2022).
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| DOI
O. Hosten, Physical Review Research 4 (2022).
2022 | Journal Article | IST-REx-ID: 10042 |

Defect engineering in solution-processed polycrystalline SnSe leads to high thermoelectric performance
Y. Liu, M. Calcabrini, Y. Yu, S. Lee, C. Chang, J. David, T. Ghosh, M.C. Spadaro, C. Xie, O. Cojocaru-Mirédin, J. Arbiol, M. Ibáñez, ACS Nano 16 (2022) 78–88.
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Y. Liu, M. Calcabrini, Y. Yu, S. Lee, C. Chang, J. David, T. Ghosh, M.C. Spadaro, C. Xie, O. Cojocaru-Mirédin, J. Arbiol, M. Ibáñez, ACS Nano 16 (2022) 78–88.
2022 | Journal Article | IST-REx-ID: 9364 |

On the size of the maximum of incomplete Kloosterman sums
D. Bonolis, Mathematical Proceedings of the Cambridge Philosophical Society 172 (2022) 563–590.
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| arXiv
D. Bonolis, Mathematical Proceedings of the Cambridge Philosophical Society 172 (2022) 563–590.
2022 | Thesis | IST-REx-ID: 11393
Contextual fear learning induced changes in AMPA receptor subtypes along the proximodistal axis in dorsal hippocampus
M. Jevtic, Contextual Fear Learning Induced Changes in AMPA Receptor Subtypes along the Proximodistal Axis in Dorsal Hippocampus, ISTA, 2022.
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M. Jevtic, Contextual Fear Learning Induced Changes in AMPA Receptor Subtypes along the Proximodistal Axis in Dorsal Hippocampus, ISTA, 2022.
2022 | Journal Article | IST-REx-ID: 11401 |

Unidentified major p-type source in SnSe: Multivacancies
V.Q. Nguyen, T.L. Trinh, C. Chang, L.D. Zhao, T.H. Nguyen, V.T. Duong, A.T. Duong, J.H. Park, S. Park, J. Kim, S. Cho, NPG Asia Materials 14 (2022).
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V.Q. Nguyen, T.L. Trinh, C. Chang, L.D. Zhao, T.H. Nguyen, V.T. Duong, A.T. Duong, J.H. Park, S. Park, J. Kim, S. Cho, NPG Asia Materials 14 (2022).
2022 | Journal Article | IST-REx-ID: 11400 |

Controlling cluster size in 2D phase-separating binary mixtures with specific interactions
I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
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I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
2022 | Journal Article | IST-REx-ID: 11402 |

Graph planning with expected finite horizon
K. Chatterjee, L. Doyen, Journal of Computer and System Sciences 129 (2022) 1–21.
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K. Chatterjee, L. Doyen, Journal of Computer and System Sciences 129 (2022) 1–21.
2022 | Journal Article | IST-REx-ID: 11420 |

Mean-field analysis of piecewise linear solutions for wide ReLU networks
A. Shevchenko, V. Kungurtsev, M. Mondelli, Journal of Machine Learning Research 23 (2022) 1–55.
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| arXiv
A. Shevchenko, V. Kungurtsev, M. Mondelli, Journal of Machine Learning Research 23 (2022) 1–55.
2022 | Journal Article | IST-REx-ID: 11419 |

Microtubule assembly by tau impairs endocytosis and neurotransmission via dynamin sequestration in Alzheimer's disease synapse model
T. Hori, K. Eguchi, H.Y. Wang, T. Miyasaka, L. Guillaud, Z. Taoufiq, S. Mahapatra, H. Yamada, K. Takei, T. Takahashi, ELife 11 (2022).
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T. Hori, K. Eguchi, H.Y. Wang, T. Miyasaka, L. Guillaud, Z. Taoufiq, S. Mahapatra, H. Yamada, K. Takei, T. Takahashi, ELife 11 (2022).
2022 | Thesis | IST-REx-ID: 11388
The genetic basis of complex traits studied via analysis of evolve and resequence experiments
S. Belohlavy, The Genetic Basis of Complex Traits Studied via Analysis of Evolve and Resequence Experiments, ISTA, 2022.
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S. Belohlavy, The Genetic Basis of Complex Traits Studied via Analysis of Evolve and Resequence Experiments, ISTA, 2022.
2022 | Journal Article | IST-REx-ID: 11418 |

Normal fluctuation in quantum ergodicity for Wigner matrices
G. Cipolloni, L. Erdös, D.J. Schröder, Annals of Probability 50 (2022) 984–1012.
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G. Cipolloni, L. Erdös, D.J. Schröder, Annals of Probability 50 (2022) 984–1012.
2022 | Journal Article | IST-REx-ID: 9955
Change in the neurochemical signature and morphological development of the parvocellular isthmic projection to the avian tectum
R. Reyes‐Pinto, J.L. Ferrán, T.A. Vega Zuniga, C. González‐Cabrera, H. Luksch, J. Mpodozis, L. Puelles, G.J. Marín, Journal of Comparative Neurology 530 (2022) 553–573.
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| DOI
| PubMed | Europe PMC
R. Reyes‐Pinto, J.L. Ferrán, T.A. Vega Zuniga, C. González‐Cabrera, H. Luksch, J. Mpodozis, L. Puelles, G.J. Marín, Journal of Comparative Neurology 530 (2022) 553–573.
2022 | Book (Editor) | IST-REx-ID: 11429
Web and Wireless Geographical Information Systems
F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information Systems, 1st ed., Springer Nature, Cham, 2022.
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| DOI
F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information Systems, 1st ed., Springer Nature, Cham, 2022.
2022 | Journal Article | IST-REx-ID: 10182
The assembly, regulation and function of the mitochondrial respiratory chain
I. Vercellino, L.A. Sazanov, Nature Reviews Molecular Cell Biology 23 (2022) 141–161.
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| DOI
| PubMed | Europe PMC
I. Vercellino, L.A. Sazanov, Nature Reviews Molecular Cell Biology 23 (2022) 141–161.
2022 | Journal Article | IST-REx-ID: 10413
Generalized quasi-metric semilattices
D. Dikranjan, A. Giordano Bruno, H.P. Künzi, N. Zava, D. Toller, Topology and Its Applications 309 (2022).
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| DOI
D. Dikranjan, A. Giordano Bruno, H.P. Künzi, N. Zava, D. Toller, Topology and Its Applications 309 (2022).
2022 | Journal Article | IST-REx-ID: 10587
Inkjet printing of epitaxially connected nanocrystal superlattices
D. Balazs, N.D. Erkan, M. Quien, T. Hanrath, Nano Research 15 (2022) 4536–4543.
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| DOI
D. Balazs, N.D. Erkan, M. Quien, T. Hanrath, Nano Research 15 (2022) 4536–4543.
2022 | Journal Article | IST-REx-ID: 11417 |

Emerging qubit systems: Guest editorial
A.J. Sigillito, J.P. Covey, J.M. Fink, K. Petersson, S. Preble, Applied Physics Letters 120 (2022).
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A.J. Sigillito, J.P. Covey, J.M. Fink, K. Petersson, S. Preble, Applied Physics Letters 120 (2022).
2022 | Journal Article | IST-REx-ID: 10922 |

Worst-case rigidity analysis and optimization for assemblies with mechanical joints
Z. Liu, J. Hu, H. Xu, P. Song, R. Zhang, B. Bickel, C.-W. Fu, Computer Graphics Forum 41 (2022) 507–519.
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Z. Liu, J. Hu, H. Xu, P. Song, R. Zhang, B. Bickel, C.-W. Fu, Computer Graphics Forum 41 (2022) 507–519.
2022 | Journal Article | IST-REx-ID: 11432 |

Coupling 3D liquid simulation with 2D wave propagation for large scale water surface animation using the equivalent sources method
C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.
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C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.
2022 | Journal Article | IST-REx-ID: 11435 |

A quantitative Helly-type theorem: Containment in a homothet
G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
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| arXiv
G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
2022 | Journal Article | IST-REx-ID: 10335 |

Even maps, the Colin de Verdière number and representations of graphs
V. Kaluza, M. Tancer, Combinatorica (2022).
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| DOI
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| arXiv
V. Kaluza, M. Tancer, Combinatorica (2022).
2022 | Journal Article | IST-REx-ID: 11434
Role of the eastern equatorial Indian Ocean warming in the Indian summer monsoon rainfall trend
B.B. GOSWAMI, Climate Dynamics (2022).
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| DOI
B.B. GOSWAMI, Climate Dynamics (2022).
2022 | Book Chapter | IST-REx-ID: 11440 |

The persistent homology of dual digital image constructions
B. Bleile, A. Garin, T. Heiss, K. Maggs, V. Robins, in:, E. Gasparovic, V. Robins, K. Turner (Eds.), Research in Computational Topology 2, 1st ed., Springer Nature, Cham, 2022, pp. 1–26.
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| DOI
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B. Bleile, A. Garin, T. Heiss, K. Maggs, V. Robins, in:, E. Gasparovic, V. Robins, K. Turner (Eds.), Research in Computational Topology 2, 1st ed., Springer Nature, Cham, 2022, pp. 1–26.
2022 | Journal Article | IST-REx-ID: 11438 |

Laser frequency-offset locking at 10-Hz-level instability using hybrid electronic filters
V. Li, F.R. Diorico, O. Hosten, Physical Review Applied 17 (2022).
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| DOI
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| arXiv
V. Li, F.R. Diorico, O. Hosten, Physical Review Applied 17 (2022).
2022 | Journal Article | IST-REx-ID: 10841 |

Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components
D. Dahhan, G. Reynolds, J. Cárdenas, D. Eeckhout, A.J. Johnson, K. Yperman, W. Kaufmann, N. Vang, X. Yan, I. Hwang, A. Heese, G. De Jaeger, J. Friml, D. Van Damme, J. Pan, S. Bednarek, Plant Cell 34 (2022) 2150–2173.
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| DOI
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| PubMed | Europe PMC
D. Dahhan, G. Reynolds, J. Cárdenas, D. Eeckhout, A.J. Johnson, K. Yperman, W. Kaufmann, N. Vang, X. Yan, I. Hwang, A. Heese, G. De Jaeger, J. Friml, D. Van Damme, J. Pan, S. Bednarek, Plant Cell 34 (2022) 2150–2173.
2022 | Journal Article | IST-REx-ID: 10016 |

Fourteen stations of auxin
J. Friml, Cold Spring Harbor Perspectives in Biology 14 (2022).
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J. Friml, Cold Spring Harbor Perspectives in Biology 14 (2022).
2022 | Journal Article | IST-REx-ID: 11449
Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development
D.J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, Cell Systems 13 (2022) 438–453.e5.
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| DOI
| PubMed | Europe PMC
D.J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, Cell Systems 13 (2022) 438–453.e5.
2022 | Journal Article | IST-REx-ID: 10548 |

Scaling limit of the homogenization commutator for Gaussian coefficient fields
M. Duerinckx, J.L. Fischer, A. Gloria, Annals of Applied Probability 32 (2022) 1179–1209.
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| arXiv
M. Duerinckx, J.L. Fischer, A. Gloria, Annals of Applied Probability 32 (2022) 1179–1209.
2022 | Journal Article | IST-REx-ID: 11448 |

Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
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| Files available
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L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
2022 | Journal Article | IST-REx-ID: 11460 |

WDFY3 mutation alters laminar position and morphology of cortical neurons
Z.A. Schaaf, L. Tat, N. Cannizzaro, R. Green, T. Rülicke, S. Hippenmeyer, K.S. Zarbalis, Molecular Autism 13 (2022).
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Z.A. Schaaf, L. Tat, N. Cannizzaro, R. Green, T. Rülicke, S. Hippenmeyer, K.S. Zarbalis, Molecular Autism 13 (2022).
2022 | Conference Paper | IST-REx-ID: 11459 |

Differential cost analysis with simultaneous potentials and anti-potentials
D. Zikelic, B.-Y.E. Chang, P. Bolignano, F. Raimondi, in:, Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2022, pp. 442–457.
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D. Zikelic, B.-Y.E. Chang, P. Bolignano, F. Raimondi, in:, Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2022, pp. 442–457.
2022 | Journal Article | IST-REx-ID: 11471 |

Avoiding barren plateaus using classical shadows
S. Sack, R.A. Medina Ramos, A. Michailidis, R. Kueng, M. Serbyn, PRX Quantum 3 (2022).
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| arXiv
S. Sack, R.A. Medina Ramos, A. Michailidis, R. Kueng, M. Serbyn, PRX Quantum 3 (2022).
2022 | Journal Article | IST-REx-ID: 11469 |

Localization of a mobile impurity interacting with an Anderson insulator
P. Brighi, A. Michailidis, K. Kirova, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).
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P. Brighi, A. Michailidis, K. Kirova, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).
2022 | Journal Article | IST-REx-ID: 11470 |

Propagation of many-body localization in an Anderson insulator
P. Brighi, A.A. Michailidis, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).
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P. Brighi, A.A. Michailidis, D.A. Abanin, M. Serbyn, Physical Review B 105 (2022).
2022 | Conference Paper | IST-REx-ID: 11476 |

CoCoA: Concurrent continuous group key agreement
J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham, 2022, pp. 815–844.
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J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham, 2022, pp. 815–844.
2022 | Journal Article | IST-REx-ID: 11479 |

Ten years of demographic modelling of divergence and speciation in the sea
A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram, R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 00 (2022) 1–18.
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A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram, R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 00 (2022) 1–18.
2022 | Journal Article | IST-REx-ID: 11489 |

The hydrophilic loop of Arabidopsis PIN1 auxin efflux carrier harbors hallmarks of an intrinsically disordered protein
V. Bilanovičová, N. Rýdza, L. Koczka, M. Hess, E. Feraru, J. Friml, T. Nodzyński, International Journal of Molecular Sciences 23 (2022) 6352.
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| PubMed | Europe PMC
V. Bilanovičová, N. Rýdza, L. Koczka, M. Hess, E. Feraru, J. Friml, T. Nodzyński, International Journal of Molecular Sciences 23 (2022) 6352.
2022 | Thesis | IST-REx-ID: 11473 |

Polarons in Bose gases and polar crystals: Some rigorous energy estimates
K. Mysliwy, Polarons in Bose Gases and Polar Crystals: Some Rigorous Energy Estimates, Institute of Science and Technology Austria (ISTA), 2022.
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K. Mysliwy, Polarons in Bose Gases and Polar Crystals: Some Rigorous Energy Estimates, Institute of Science and Technology Austria (ISTA), 2022.
2022 | Journal Article | IST-REx-ID: 10564 |

Polaron models with regular interactions at strong coupling
K. Mysliwy, R. Seiringer, Journal of Statistical Physics 186 (2022).
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| arXiv
K. Mysliwy, R. Seiringer, Journal of Statistical Physics 186 (2022).
2022 | Thesis | IST-REx-ID: 10799 |

Robustness and fairness in machine learning
N.H. Konstantinov, Robustness and Fairness in Machine Learning, IST Austria, 2022.
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N.H. Konstantinov, Robustness and Fairness in Machine Learning, IST Austria, 2022.
2022 | Journal Article | IST-REx-ID: 10802 |

Fairness-aware PAC learning from corrupted data
N.H. Konstantinov, C. Lampert, Journal of Machine Learning Research 23 (2022) 1–60.
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| arXiv
N.H. Konstantinov, C. Lampert, Journal of Machine Learning Research 23 (2022) 1–60.
2022 | Journal Article | IST-REx-ID: 11551 |

Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit
D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A. Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R. Martí, Communications Biology 5 (2022).
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D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A. Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R. Martí, Communications Biology 5 (2022).
2022 | Journal Article | IST-REx-ID: 11179 |

Functional control of a 0.5 MDa TET aminopeptidase by a flexible loop revealed by MAS NMR
D.F. Gauto, P. Macek, D. Malinverni, H. Fraga, M. Paloni, I. Sučec, A. Hessel, J.P. Bustamante, A. Barducci, P. Schanda, Nature Communications 13 (2022).
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D.F. Gauto, P. Macek, D. Malinverni, H. Fraga, M. Paloni, I. Sučec, A. Hessel, J.P. Bustamante, A. Barducci, P. Schanda, Nature Communications 13 (2022).
2022 | Journal Article | IST-REx-ID: 11552 |

Femtosecond rotational dynamics of D2 molecules in superfluid helium nanodroplets
J. Qiang, L. Zhou, P. Lu, K. Lin, Y. Ma, S. Pan, C. Lu, W. Jiang, F. Sun, W. Zhang, H. Li, X. Gong, I.S. Averbukh, Y. Prior, C.A. Schouder, H. Stapelfeldt, I. Cherepanov, M. Lemeshko, W. Jäger, J. Wu, Physical Review Letters 128 (2022).
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| arXiv
J. Qiang, L. Zhou, P. Lu, K. Lin, Y. Ma, S. Pan, C. Lu, W. Jiang, F. Sun, W. Zhang, H. Li, X. Gong, I.S. Averbukh, Y. Prior, C.A. Schouder, H. Stapelfeldt, I. Cherepanov, M. Lemeshko, W. Jäger, J. Wu, Physical Review Letters 128 (2022).
2022 | Journal Article | IST-REx-ID: 11546 |

Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
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A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
2022 | Journal Article | IST-REx-ID: 11556 |

Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics
A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).
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| arXiv
A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).
2022 | Journal Article | IST-REx-ID: 11588 |

Single platelet and megakaryocyte morpho-dynamics uncovered by multicolor reporter mouse strains in vitro and in vivo
L. Nicolai, R. Kaiser, R. Escaig, M.L. Hoffknecht, A. Anjum, A. Leunig, J. Pircher, A. Ehrlich, M. Lorenz, H. Ishikawa-Ankerhold, W.C. Aird, S. Massberg, F.R. Gärtner, Haematologica 107 (2022) 1669–1680.
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L. Nicolai, R. Kaiser, R. Escaig, M.L. Hoffknecht, A. Anjum, A. Leunig, J. Pircher, A. Ehrlich, M. Lorenz, H. Ishikawa-Ankerhold, W.C. Aird, S. Massberg, F.R. Gärtner, Haematologica 107 (2022) 1669–1680.
2022 | Journal Article | IST-REx-ID: 11590 |

Artificial atoms from cold bosons in one dimension
F. Brauneis, T.G. Backert, S.I. Mistakidis, M. Lemeshko, H.W. Hammer, A. Volosniev, New Journal of Physics 24 (2022).
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F. Brauneis, T.G. Backert, S.I. Mistakidis, M. Lemeshko, H.W. Hammer, A. Volosniev, New Journal of Physics 24 (2022).
2022 | Journal Article | IST-REx-ID: 11591 |

Long-distance distribution of qubit-qubit entanglement using Gaussian-correlated photonic beams
J. Agustí, Y. Minoguchi, J.M. Fink, P. Rabl, Physical Review A 105 (2022).
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| arXiv
J. Agustí, Y. Minoguchi, J.M. Fink, P. Rabl, Physical Review A 105 (2022).
2022 | Journal Article | IST-REx-ID: 11592 |

Unitary Fermi superfluid near the critical temperature: Thermodynamics and sound modes from elementary excitations
G. Bighin, A. Cappellaro, L. Salasnich, Physical Review A 105 (2022).
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G. Bighin, A. Cappellaro, L. Salasnich, Physical Review A 105 (2022).
2022 | Journal Article | IST-REx-ID: 11593
The Z2 -Genus of Kuratowski minors
R. Fulek, J. Kynčl, Discrete and Computational Geometry (2022).
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| arXiv
R. Fulek, J. Kynčl, Discrete and Computational Geometry (2022).
2022 | Journal Article | IST-REx-ID: 11587 |

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wießner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. 2022. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biology. 23, 149.
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Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wießner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. 2022. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biology. 23, 149.
2022 | Journal Article | IST-REx-ID: 11447 |

Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
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R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
2022 | Journal Article | IST-REx-ID: 11330 |

A dual formula for the noncommutative transport distance
M. Wirth, Journal of Statistical Physics 187 (2022).
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M. Wirth, Journal of Statistical Physics 187 (2022).
2022 | Journal Article | IST-REx-ID: 9794 |

Multitier mechanics control stromal adaptations in swelling lymph nodes
F.P. Assen, J. Abe, M. Hons, R. Hauschild, S. Shamipour, W. Kaufmann, T. Costanzo, G. Krens, M. Brown, B. Ludewig, S. Hippenmeyer, C.-P.J. Heisenberg, W. Weninger, E.B. Hannezo, S.A. Luther, J.V. Stein, M.K. Sixt, Nature Immunology (2022).
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F.P. Assen, J. Abe, M. Hons, R. Hauschild, S. Shamipour, W. Kaufmann, T. Costanzo, G. Krens, M. Brown, B. Ludewig, S. Hippenmeyer, C.-P.J. Heisenberg, W. Weninger, E.B. Hannezo, S.A. Luther, J.V. Stein, M.K. Sixt, Nature Immunology (2022).
2022 | Journal Article | IST-REx-ID: 11637 |

ROS and cGMP signaling modulate persistent escape from hypoxia in Caenorhabditis elegans
L. Zhao, L.A. Fenk, L. Nilsson, N.P. Amin-Wetzel, N. Ramirez, M. de Bono, C. Chen, PLoS Biology 20 (2022).
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L. Zhao, L.A. Fenk, L. Nilsson, N.P. Amin-Wetzel, N. Ramirez, M. de Bono, C. Chen, PLoS Biology 20 (2022).
2022 | Journal Article | IST-REx-ID: 11638 |

Inferring couplings in networks across order-disorder phase transitions
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
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| arXiv
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
2022 | Journal Article | IST-REx-ID: 11411 |

Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus
P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, Genetics 221 (2022).
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P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, Genetics 221 (2022).
2022 | Journal Article | IST-REx-ID: 11639
List decoding random Euclidean codes and Infinite constellations
Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory (2022).
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Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory (2022).
2022 | Research Data | IST-REx-ID: 11321 |

Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus
P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, (2022).
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P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, (2022).
2022 | Journal Article | IST-REx-ID: 11636
The Bertini irreducibility theorem for higher codimensional slices
P. Kmentt, A.L. Shute, Finite Fields and Their Applications 83 (2022).
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| arXiv
P. Kmentt, A.L. Shute, Finite Fields and Their Applications 83 (2022).
2022 | Journal Article | IST-REx-ID: 10791 |

Tissue-wide effects override cell-intrinsic gene function in radial neuron migration
A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter, C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford Open Neuroscience 1 (2022).
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A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter, C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford Open Neuroscience 1 (2022).
2022 | Journal Article | IST-REx-ID: 11640 |

Using gridCoal to assess whether standard population genetic theory holds in the presence of spatio-temporal heterogeneity in population size
E. Szep, B. Trubenova, K. Csilléry, Molecular Ecology Resources (2022).
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E. Szep, B. Trubenova, K. Csilléry, Molecular Ecology Resources (2022).
2022 | Journal Article | IST-REx-ID: 11648
Structures of multisubunit membrane complexes with the CRYO ARM 200
C. Gerle, J. Kishikawa, T. Yamaguchi, A. Nakanishi, M.O. Çoruh, F. Makino, T. Miyata, A. Kawamoto, K. Yokoyama, K. Namba, G. Kurisu, T. Kato, Microscopy (n.d.).
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C. Gerle, J. Kishikawa, T. Yamaguchi, A. Nakanishi, M.O. Çoruh, F. Makino, T. Miyata, A. Kawamoto, K. Yokoyama, K. Namba, G. Kurisu, T. Kato, Microscopy (n.d.).
2022 | Journal Article | IST-REx-ID: 11658 |

Depth in arrangements: Dehn–Sommerville–Euler relations with applications
R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Leibniz International Proceedings on Mathematics (n.d.).
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R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Leibniz International Proceedings on Mathematics (n.d.).
2022 | Journal Article | IST-REx-ID: 11660 |

A window to the persistence of 1D maps. I: Geometric characterization of critical point pairs
R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, LIPIcs (n.d.).
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R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, LIPIcs (n.d.).
2022 | Journal Article | IST-REx-ID: 10411
Bending to auxin: Fast acid growth for tropisms
L. Li, M.C. Gallei, J. Friml, Trends in Plant Science 27 (2022) 440–449.
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L. Li, M.C. Gallei, J. Friml, Trends in Plant Science 27 (2022) 440–449.
2022 | Journal Article | IST-REx-ID: 10566
Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application
M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol, M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).
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M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol, M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).
2022 | Journal Article | IST-REx-ID: 10758 |

1H NMR chemical exchange techniques reveal local and global effects of oxidized cytosine derivatives
R.C.A. Dubini, E. Korytiaková, T. Schinkel, P. Heinrichs, T. Carell, P. Rovo, ACS Physical Chemistry Au 2 (2022) 237–246.
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| PubMed | Europe PMC
R.C.A. Dubini, E. Korytiaková, T. Schinkel, P. Heinrichs, T. Carell, P. Rovo, ACS Physical Chemistry Au 2 (2022) 237–246.
2022 | Journal Article | IST-REx-ID: 10732 |

Thermalisation for Wigner matrices
G. Cipolloni, L. Erdös, D.J. Schröder, Journal of Functional Analysis 282 (2022).
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| arXiv
G. Cipolloni, L. Erdös, D.J. Schröder, Journal of Functional Analysis 282 (2022).
2022 | Journal Article | IST-REx-ID: 10717
Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots
R. Wang, E. Himschoot, M. Grenzi, J. Chen, A. Safi, M. Krebs, K. Schumacher, M. Nowack, W. Moeder, K. Yoshioka, D. Van Damme, I. De Smet, D. Geelen, T. Beeckman, J. Friml, A. Costa, S. Vanneste, Journal of Experimental Botany 73 (2022).
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R. Wang, E. Himschoot, M. Grenzi, J. Chen, A. Safi, M. Krebs, K. Schumacher, M. Nowack, W. Moeder, K. Yoshioka, D. Van Damme, I. De Smet, D. Geelen, T. Beeckman, J. Friml, A. Costa, S. Vanneste, Journal of Experimental Botany 73 (2022).
2022 | Journal Article | IST-REx-ID: 10705
Rigidity transitions in development and disease
E.B. Hannezo, C.-P.J. Heisenberg, Trends in Cell Biology 32 (2022) P433-444.
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E.B. Hannezo, C.-P.J. Heisenberg, Trends in Cell Biology 32 (2022) P433-444.
2022 | Journal Article | IST-REx-ID: 10753
A familiar thought: Machines that replace us?
B.J. Confavreux, T.P. Vogels, Neuron 110 (2022) 361–362.
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B.J. Confavreux, T.P. Vogels, Neuron 110 (2022) 361–362.
2022 | Journal Article | IST-REx-ID: 10770 |

Where do mistakes lead? A survey of games with incompetent players
T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications (2022).
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T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications (2022).
2022 | Journal Article | IST-REx-ID: 10772 |

Mirror symmetry for the Tate curve via tropical and log corals
N.H. Arguez, Journal of the London Mathematical Society 105 (2022) 343–411.
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| arXiv
N.H. Arguez, Journal of the London Mathematical Society 105 (2022) 343–411.