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4354 Publications

2022 | Journal Article | IST-REx-ID: 11442 | OA
Closed-loop control of direct ink writing via reinforcement learning
M. Piovarci, M. Foshey, J. Xu, T. Erps, V. Babaei, P. Didyk, S. Rusinkiewicz, W. Matusik, B. Bickel, ACM Transactions on Graphics 41 (2022).
View | Files available | DOI | arXiv
 
2022 | Book Chapter | IST-REx-ID: 11440 | OA
The persistent homology of dual digital image constructions
B. Bleile, A. Garin, T. Heiss, K. Maggs, V. Robins, in:, E. Gasparovic, V. Robins, K. Turner (Eds.), Research in Computational Topology 2, 1st ed., Springer Nature, Cham, 2022, pp. 1–26.
View | DOI | Download Preprint (ext.) | arXiv
 
2022 | Journal Article | IST-REx-ID: 11438 | OA
Laser frequency-offset locking at 10-Hz-level instability using hybrid electronic filters
V. Li, F.R. Diorico, O. Hosten, Physical Review Applied 17 (2022).
View | DOI | Download Preprint (ext.) | arXiv
 
2022 | Journal Article | IST-REx-ID: 11435 | OA
A quantitative Helly-type theorem: Containment in a homothet
G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
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2022 | Journal Article | IST-REx-ID: 11448 | OA
Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
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2022 | Journal Article | IST-REx-ID: 11447 | OA
Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
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2022 | Journal Article | IST-REx-ID: 11449 | OA
Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development
D.J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, Cell Systems 13 (2022) 438–453.e5.
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2022 | Journal Article | IST-REx-ID: 11443 | OA
Extension complexity of low-dimensional polytopes
M.A. Kwan, L. Sauermann, Y. Zhao, Transactions of the American Mathematical Society 375 (2022) 4209–4250.
View | DOI | Download Preprint (ext.) | arXiv
 
2022 | Journal Article | IST-REx-ID: 11444 | OA
From the prefect’s desk: Gerard van Swieten’s library correspondence
C.A. Chlebak, P.H. Reid, Library and Information History 38 (2022) 23–41.
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2022 | Conference Paper | IST-REx-ID: 11459 | OA
Differential cost analysis with simultaneous potentials and anti-potentials
D. Zikelic, B.-Y.E. Chang, P. Bolignano, F. Raimondi, in:, Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2022, pp. 442–457.
View | Files available | DOI | arXiv
 
2022 | Book Chapter | IST-REx-ID: 11456
Proteomic Analysis of C. Elegans Neurons Using TurboID-Based Proximity Labeling
M. Artan, M. de Bono, in:, D. Yamamoto (Ed.), Behavioral Neurogenetics, Springer Nature, New York, 2022, pp. 277–294.
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2022 | Journal Article | IST-REx-ID: 11460 | OA
WDFY3 mutation alters laminar position and morphology of cortical neurons
Z.A. Schaaf, L. Tat, N. Cannizzaro, R. Green, T. Rülicke, S. Hippenmeyer, K.S. Zarbalis, Molecular Autism 13 (2022).
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2022 | Journal Article | IST-REx-ID: 11471 | OA
Avoiding barren plateaus using classical shadows
S. Sack, R.A. Medina Ramos, A. Michailidis, R. Kueng, M. Serbyn, PRX Quantum 3 (2022).
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 11462
Combining of synthetic VHH and immune scFv libraries for pregnancy-associated glycoproteins ELISA development
D. Dormeshkin, M. Shapira, A. Karputs, A. Kavaleuski, I. Kuzminski, E. Stepanova, A. Gilep, Applied Microbiology and Biotechnology 106 (2022) 5093–5103.
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2022 | Conference Paper | IST-REx-ID: 11476 | OA
CoCoA: Concurrent continuous group key agreement
J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham, 2022, pp. 815–844.
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2022 | Journal Article | IST-REx-ID: 10564 | OA
Polaron models with regular interactions at strong coupling
K. Mysliwy, R. Seiringer, Journal of Statistical Physics 186 (2022).
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 11489 | OA
The hydrophilic loop of Arabidopsis PIN1 auxin efflux carrier harbors hallmarks of an intrinsically disordered protein
V. Bilanovičová, N. Rýdza, L. Koczka, M. Hess, E. Feraru, J. Friml, T. Nodzyński, International Journal of Molecular Sciences 23 (2022) 6352.
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2022 | Journal Article | IST-REx-ID: 11546 | OA
Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
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2022 | Journal Article | IST-REx-ID: 11545 | OA
Contravariant pairings between standard Whittaker modules and Verma modules
A. Brown, A. Romanov, Journal of Algebra 609 (2022) 145–179.
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2022 | Journal Article | IST-REx-ID: 11553 | OA
The dynamics of complex box mappings
T. Clark, K. Drach, O. Kozlovski, S.V. Strien, Arnold Mathematical Journal 8 (2022) 319–410.
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2022 | Journal Article | IST-REx-ID: 11551 | OA
Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit
D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A. Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R. Martí, Communications Biology 5 (2022).
View | Files available | DOI | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 11552 | OA
Femtosecond rotational dynamics of D2 molecules in superfluid helium nanodroplets
J. Qiang, L. Zhou, P. Lu, K. Lin, Y. Ma, S. Pan, C. Lu, W. Jiang, F. Sun, W. Zhang, H. Li, X. Gong, I.S. Averbukh, Y. Prior, C.A. Schouder, H. Stapelfeldt, I. Cherepanov, M. Lemeshko, W. Jäger, J. Wu, Physical Review Letters 128 (2022).
View | DOI | Download Submitted Version (ext.) | arXiv
 
2022 | Journal Article | IST-REx-ID: 11556 | OA
Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics
A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).
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2022 | Journal Article | IST-REx-ID: 11587 | OA
A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wießner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. 2022. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biology. 23, 149.
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2022 | Journal Article | IST-REx-ID: 11588 | OA
Single platelet and megakaryocyte morpho-dynamics uncovered by multicolor reporter mouse strains in vitro and in vivo
L. Nicolai, R. Kaiser, R. Escaig, M.L. Hoffknecht, A. Anjum, A. Leunig, J. Pircher, A. Ehrlich, M. Lorenz, H. Ishikawa-Ankerhold, W.C. Aird, S. Massberg, F.R. Gärtner, Haematologica 107 (2022) 1669–1680.
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2022 | Journal Article | IST-REx-ID: 11589 | OA
Constitutive active CPK30 interferes with root growth and endomembrane trafficking in Arabidopsis thaliana
R. Wang, E. Himschoot, J. Chen, M. Boudsocq, D. Geelen, J. Friml, T. Beeckman, S. Vanneste, Frontiers in Plant Science 13 (2022).
View | Files available | DOI | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 11590 | OA
Artificial atoms from cold bosons in one dimension
F. Brauneis, T.G. Backert, S.I. Mistakidis, M. Lemeshko, H.W. Hammer, A. Volosniev, New Journal of Physics 24 (2022).
View | Files available | DOI
 
2022 | Journal Article | IST-REx-ID: 11591 | OA
Long-distance distribution of qubit-qubit entanglement using Gaussian-correlated photonic beams
J. Agustí, Y. Minoguchi, J.M. Fink, P. Rabl, Physical Review A 105 (2022).
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2022 | Journal Article | IST-REx-ID: 11592 | OA
Unitary Fermi superfluid near the critical temperature: Thermodynamics and sound modes from elementary excitations
G. Bighin, A. Cappellaro, L. Salasnich, Physical Review A 105 (2022).
View | DOI | Download Preprint (ext.) | arXiv
 
2022 | Journal Article | IST-REx-ID: 10411
Bending to auxin: Fast acid growth for tropisms
L. Li, M.C. Gallei, J. Friml, Trends in Plant Science 27 (2022) 440–449.
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2022 | Journal Article | IST-REx-ID: 11637 | OA
ROS and cGMP signaling modulate persistent escape from hypoxia in Caenorhabditis elegans
L. Zhao, L.A. Fenk, L. Nilsson, N.P. Amin-Wetzel, N. Ramirez, M. de Bono, C. Chen, PLoS Biology 20 (2022).
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2022 | Journal Article | IST-REx-ID: 11638 | OA
Inferring couplings in networks across order-disorder phase transitions
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 11636 | OA
The Bertini irreducibility theorem for higher codimensional slices
P. Kmentt, A.L. Shute, Finite Fields and Their Applications 83 (2022).
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 11639 | OA
List decoding random Euclidean codes and Infinite constellations
Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 68 (2022) 7753–7786.
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2022 | Journal Article | IST-REx-ID: 11640 | OA
Using gridCoal to assess whether standard population genetic theory holds in the presence of spatio-temporal heterogeneity in population size
E. Szep, B. Trubenova, K. Csilléry, Molecular Ecology Resources 22 (2022) 2941–2955.
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2022 | Journal Article | IST-REx-ID: 11648 | OA
Structures of multisubunit membrane complexes with the CRYO ARM 200
C. Gerle, J. Kishikawa, T. Yamaguchi, A. Nakanishi, M.O. Çoruh, F. Makino, T. Miyata, A. Kawamoto, K. Yokoyama, K. Namba, G. Kurisu, T. Kato, Microscopy 71 (2022) 249–261.
View | Files available | DOI | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 11658 | OA
Depth in arrangements: Dehn–Sommerville–Euler relations with applications
R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Leibniz International Proceedings on Mathematics (n.d.).
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2022 | Journal Article | IST-REx-ID: 11660 | OA
A window to the persistence of 1D maps. I: Geometric characterization of critical point pairs
R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, LIPIcs (n.d.).
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2022 | Journal Article | IST-REx-ID: 10604 | OA
Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control
M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.
View | Files available | DOI
 
2022 | Research Data Reference | IST-REx-ID: 11686 | OA
Wolbachia frequency data from: Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics and disease control
M. Turelli, N.H. Barton, (2022).
View | Files available | DOI | Download Published Version (ext.)
 
2022 | Journal Article | IST-REx-ID: 11451 | OA
The chemistry of Cu₃N and Cu₃PdN nanocrystals
M. Parvizian, A. Duràn Balsa, R. Pokratath, C. Kalha, S. Lee, D. Van Den Eynden, M. Ibáñez, A. Regoutz, J. De Roo, Angewandte Chemie - International Edition 61 (2022).
View | Files available | DOI | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 11700 | OA
Gradient flow formulation of diffusion equations in the Wasserstein space over a metric graph
M. Erbar, D.L. Forkert, J. Maas, D. Mugnolo, Networks and Heterogeneous Media 17 (2022) 687–717.
View | DOI | Download Preprint (ext.) | arXiv
 
2022 | Research Data Reference | IST-REx-ID: 11695 | OA
Data for "The chemistry of Cu3N and Cu3PdN nanocrystals"
M. Parvizian, A. Duran Balsa, R. Pokratath, C. Kalha, S. Lee, D. Van den Eynden, M. Ibáñez, A. Regoutz, J. De Roo, (2022).
View | Files available | DOI | Download Published Version (ext.)
 
2022 | Journal Article | IST-REx-ID: 11705 | OA
Surface functionalization of surfactant-free particles: A strategy to tailor the properties of nanocomposites for enhanced thermoelectric performance
C. Chang, Y. Liu, S. Lee, M. Spadaro, K.M. Koskela, T. Kleinhanns, T. Costanzo, J. Arbiol, R.L. Brutchey, M. Ibáñez, Angewandte Chemie - International Edition 61 (2022).
View | Files available | DOI
 
2022 | Journal Article | IST-REx-ID: 11703 | OA
Dioecy and chromosomal sex determination are maintained through allopolyploid speciation in the plant genus Mercurialis
M.A. Toups, B. Vicoso, J.R. Pannell, PLoS Genetics 18 (2022).
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2022 | Conference Paper | IST-REx-ID: 11707 | OA
Local mending
A. Balliu, J. Hirvonen, D. Melnyk, D. Olivetti, J. Rybicki, J. Suomela, in:, M. Parter (Ed.), International Colloquium on Structural Information and Communication Complexity, Springer Nature, 2022, pp. 1–20.
View | DOI | Download Preprint (ext.) | arXiv
 
2022 | Journal Article | IST-REx-ID: 11701 | OA
Nonlinear parabolic stochastic evolution equations in critical spaces Part I. Stochastic maximal regularity and local existence
A. Agresti, M. Veraar, Nonlinearity 35 (2022) 4100–4210.
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 11702 | OA
The "New Synthesis"
N.H. Barton, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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2022 | Journal Article | IST-REx-ID: 11706 | OA
Asymmetric Ramsey properties of random graphs involving cliques and cycles
A. Liebenau, L. Mattos, W. Mendonca dos Santos, J. Skokan, Random Structures and Algorithms (2022).
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2022 | Journal Article | IST-REx-ID: 11723 | OA
RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis
L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml, Proceedings of the National Academy of Sciences 119 (2022).
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