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4170 Publications
2015 | Journal Article | IST-REx-ID: 1574 | 
A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development
Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik KT, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. 2015. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature Communications. 6, 8821.
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Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik KT, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. 2015. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature Communications. 6, 8821.
2015 | Journal Article | IST-REx-ID: 1575 |
Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells
M. Chabaud, M. Heuzé, M. Bretou, P. Vargas, P. Maiuri, P. Solanes, M. Maurin, E. Terriac, M. Le Berre, D. Lankar, T. Piolot, R. Adelstein, Y. Zhang, M.K. Sixt, J. Jacobelli, O. Bénichou, R. Voituriez, M. Piel, A. Lennon Duménil, Nature Communications 6 (2015).
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M. Chabaud, M. Heuzé, M. Bretou, P. Vargas, P. Maiuri, P. Solanes, M. Maurin, E. Terriac, M. Le Berre, D. Lankar, T. Piolot, R. Adelstein, Y. Zhang, M.K. Sixt, J. Jacobelli, O. Bénichou, R. Voituriez, M. Piel, A. Lennon Duménil, Nature Communications 6 (2015).
2015 | Journal Article | IST-REx-ID: 1576 |
Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation
S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015).
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S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015).
2015 | Journal Article | IST-REx-ID: 1577 |
Birth of a new gene on the Y chromosome of Drosophila melanogaster
A. Carvalho, B. Vicoso, C. Russo, B. Swenor, A. Clark, PNAS 112 (2015) 12450–12455.
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A. Carvalho, B. Vicoso, C. Russo, B. Swenor, A. Clark, PNAS 112 (2015) 12450–12455.
2015 | Journal Article | IST-REx-ID: 1578
Triangulations from topologically correct digital Voronoi diagrams
T. Cao, H. Edelsbrunner, T. Tan, Computational Geometry 48 (2015) 507–519.
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T. Cao, H. Edelsbrunner, T. Tan, Computational Geometry 48 (2015) 507–519.
2015 | Journal Article | IST-REx-ID: 1579 |
Galois groups of Schubert problems of lines are at least alternating
C. Brooks, A. Martin del Campo Sanchez, F. Sottile, Transactions of the American Mathematical Society 367 (2015) 4183–4206.
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C. Brooks, A. Martin del Campo Sanchez, F. Sottile, Transactions of the American Mathematical Society 367 (2015) 4183–4206.
2015 | Journal Article | IST-REx-ID: 1580 |
Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons
O. Brenes, D.H. Vandael, E. Carbone, P. Montarolo, M. Ghirardi, Neuroscience 311 (2015) 430–443.
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O. Brenes, D.H. Vandael, E. Carbone, P. Montarolo, M. Ghirardi, Neuroscience 311 (2015) 430–443.
2015 | Journal Article | IST-REx-ID: 1582 |
Weighted straight skeletons in the plane
T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 120–133.
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T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 120–133.
2015 | Journal Article | IST-REx-ID: 1583 |
A simple algorithm for computing positively weighted straight skeletons of monotone polygons
T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Information Processing Letters 115 (2015) 243–247.
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T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Information Processing Letters 115 (2015) 243–247.
2015 | Journal Article | IST-REx-ID: 1584 |
Reprint of: Weighted straight skeletons in the plane
T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 429–442.
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T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 429–442.
2015 | Journal Article | IST-REx-ID: 1585
Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices
Z. Bao, G. Pan, W. Zhou, IEEE Transactions on Information Theory 61 (2015) 3413–3426.
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Z. Bao, G. Pan, W. Zhou, IEEE Transactions on Information Theory 61 (2015) 3413–3426.
2015 | Journal Article | IST-REx-ID: 1586
Metabolic engineering of cyanobacteria for the synthesis of commodity products
A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.
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A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.
2015 | Journal Article | IST-REx-ID: 1587 |
Quantum interference shifts in laser spectroscopy with elliptical polarization
P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 92 (2015).
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P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 92 (2015).
2015 | Journal Article | IST-REx-ID: 1588
Ring-bursting behavior en route to turbulence in narrow-gap Taylor-Couette flows
S. Altmeyer, Y. Do, Y. Lai, Physical Review E 92 (2015).
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S. Altmeyer, Y. Do, Y. Lai, Physical Review E 92 (2015).
2015 | Journal Article | IST-REx-ID: 1589 |
Magnetic field induced flow pattern reversal in a ferrofluidic Taylor-Couette system
S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
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S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
2015 | Book Chapter | IST-REx-ID: 1590 |
Representing directed trees as straight skeletons
O. Aichholzer, T. Biedl, T. Hackl, M. Held, S. Huber, P. Palfrader, B. Vogtenhuber, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 335–347.
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O. Aichholzer, T. Biedl, T. Hackl, M. Held, S. Huber, P. Palfrader, B. Vogtenhuber, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 335–347.
2015 | Journal Article | IST-REx-ID: 1591 |
PIN-dependent auxin transport: Action, regulation, and evolution
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
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M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
2015 | Journal Article | IST-REx-ID: 1593 |
Strategies of seedlings to overcome their sessile nature: Auxin in mobility control
P. Žádníková, D. Smet, Q. Zhu, D. Van Der Straeten, E. Benková, Frontiers in Plant Science 6 (2015).
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P. Žádníková, D. Smet, Q. Zhu, D. Van Der Straeten, E. Benková, Frontiers in Plant Science 6 (2015).
2015 | Conference Paper | IST-REx-ID: 1594
Controller synthesis for MDPs and frequency LTL\GU
V. Forejt, J. Krčál, J. Kretinsky, in:, Springer, 2015, pp. 162–177.
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V. Forejt, J. Krčál, J. Kretinsky, in:, Springer, 2015, pp. 162–177.
2015 | Conference Paper | IST-REx-ID: 1595 |
Hanani-Tutte for radial planarity
R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2015, pp. 99–110.
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R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2015, pp. 99–110.
2015 | Book Chapter | IST-REx-ID: 1596 |
Vertical visibility among parallel polygons in three dimensions
R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
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R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
2015 | Journal Article | IST-REx-ID: 1598 |
Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, Theoretical Computer Science 573 (2015) 71–89.
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K. Chatterjee, M. Joglekar, N. Shah, Theoretical Computer Science 573 (2015) 71–89.
2015 | Conference Paper | IST-REx-ID: 1601 |
The Hanoi omega-automata format
T. Babiak, F. Blahoudek, A. Duret Lutz, J. Klein, J. Kretinsky, D. Mueller, D. Parker, J. Strejček, in:, Springer, 2015, pp. 479–486.
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T. Babiak, F. Blahoudek, A. Duret Lutz, J. Klein, J. Kretinsky, D. Mueller, D. Parker, J. Strejček, in:, Springer, 2015, pp. 479–486.
2015 | Journal Article | IST-REx-ID: 1602 |
Faster algorithms for algebraic path properties in recursive state machines with constant treewidth
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, P. Goyal, ACM SIGPLAN Notices 50 (2015) 97–109.
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K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, P. Goyal, ACM SIGPLAN Notices 50 (2015) 97–109.
2015 | Conference Paper | IST-REx-ID: 1603 |
Counterexample explanation by learning small strategies in Markov decision processes
T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
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T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
2015 | Journal Article | IST-REx-ID: 1604
Quantitative interprocedural analysis
K. Chatterjee, A. Pavlogiannis, Y. Velner, Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT 50 (2015) 539–551.
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K. Chatterjee, A. Pavlogiannis, Y. Velner, Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT 50 (2015) 539–551.
2015 | Conference Paper | IST-REx-ID: 1605 |
Abstraction-based parameter synthesis for multiaffine systems
S. Bogomolov, C. Schilling, E. Bartocci, G. Batt, H. Kong, R. Grosu, in:, Springer, 2015, pp. 19–35.
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S. Bogomolov, C. Schilling, E. Bartocci, G. Batt, H. Kong, R. Grosu, in:, Springer, 2015, pp. 19–35.
2015 | Conference Paper | IST-REx-ID: 1606
Runtime verification for hybrid analysis tools
L. Nguyen, C. Schilling, S. Bogomolov, T. Johnson, in:, 6th International Conference, Springer Nature, 2015, pp. 281–286.
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L. Nguyen, C. Schilling, S. Bogomolov, T. Johnson, in:, 6th International Conference, Springer Nature, 2015, pp. 281–286.
2015 | Conference Paper | IST-REx-ID: 1607 |
Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, in:, Springer, 2015, pp. 140–157.
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K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, in:, Springer, 2015, pp. 140–157.
2015 | Conference Paper | IST-REx-ID: 1609 |
The complexity of synthesis from probabilistic components
K. Chatterjee, L. Doyen, M. Vardi, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 108–120.
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K. Chatterjee, L. Doyen, M. Vardi, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 108–120.
2015 | Conference Paper | IST-REx-ID: 1610 |
Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 121–133.
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K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 121–133.
2015 | Journal Article | IST-REx-ID: 1611 |
Construction of a robust and sensitive arginine biosensor through ancestral protein reconstruction
J. Whitfield, W. Zhang, M. Herde, B. Clifton, J. Radziejewski, H.L. Janovjak, C. Henneberger, C. Jackson, Protein Science 24 (2015) 1412–1422.
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J. Whitfield, W. Zhang, M. Herde, B. Clifton, J. Radziejewski, H.L. Janovjak, C. Henneberger, C. Jackson, Protein Science 24 (2015) 1412–1422.
2015 | Journal Article | IST-REx-ID: 1614 |
Strength and duration of perisomatic GABAergic inhibition depend on distance between synaptically connected cells
M. Strüber, P.M. Jonas, M. Bartos, PNAS 112 (2015) 1220–1225.
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| PubMed | Europe PMC
M. Strüber, P.M. Jonas, M. Bartos, PNAS 112 (2015) 1220–1225.
2015 | Journal Article | IST-REx-ID: 1615 |
Perturbed hippocampal synaptic inhibition and γ-oscillations in a neuroligin-4 knockout mouse model of autism
M. Hammer, D. Krueger Burg, L. Tuffy, B. Cooper, H. Taschenberger, S. Goswami, H. Ehrenreich, P.M. Jonas, F. Varoqueaux, J. Rhee, N. Brose, Cell Reports 13 (2015) 516–523.
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M. Hammer, D. Krueger Burg, L. Tuffy, B. Cooper, H. Taschenberger, S. Goswami, H. Ehrenreich, P.M. Jonas, F. Varoqueaux, J. Rhee, N. Brose, Cell Reports 13 (2015) 516–523.
2015 | Journal Article | IST-REx-ID: 1618 |
Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites
Veldkamp C, Kiermaier E, Gabel Eissens S, Gillitzer M, Lippner D, Disilvio F, Mueller C, Wantuch P, Chaffee G, Famiglietti M, Zgoba D, Bailey A, Bah Y, Engebretson S, Graupner D, Lackner E, Larosa V, Medeiros T, Olson M, Phillips A, Pyles H, Richard A, Schoeller S, Touzeau B, Williams L, Sixt MK, Peterson F. 2015. Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites. Biochemistry. 54(27), 4163–4166.
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Veldkamp C, Kiermaier E, Gabel Eissens S, Gillitzer M, Lippner D, Disilvio F, Mueller C, Wantuch P, Chaffee G, Famiglietti M, Zgoba D, Bailey A, Bah Y, Engebretson S, Graupner D, Lackner E, Larosa V, Medeiros T, Olson M, Phillips A, Pyles H, Richard A, Schoeller S, Touzeau B, Williams L, Sixt MK, Peterson F. 2015. Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites. Biochemistry. 54(27), 4163–4166.
2015 | Journal Article | IST-REx-ID: 1623 |
Single-cell screening of photosynthetic growth and lactate production by cyanobacteria
P. Hammar, A. Angermayr, S. Sjostrom, J. Van Der Meer, K. Hellingwerf, E. Hudson, H. Joensson, Biotechnology for Biofuels 8 (2015).
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P. Hammar, A. Angermayr, S. Sjostrom, J. Van Der Meer, K. Hellingwerf, E. Hudson, H. Joensson, Biotechnology for Biofuels 8 (2015).
2015 | Journal Article | IST-REx-ID: 1624 |
Cellular cooperation with shift updating and repulsion
A. Pavlogiannis, K. Chatterjee, B. Adlam, M. Nowak, Scientific Reports 5 (2015).
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A. Pavlogiannis, K. Chatterjee, B. Adlam, M. Nowak, Scientific Reports 5 (2015).
2015 | Conference Paper | IST-REx-ID: 1625
Detailed spatio-temporal reconstruction of eyelids
A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, M. Gross, in:, ACM, 2015.
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A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, M. Gross, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1626
OmniAD: Data-driven omni-directional aerodynamics
T. Martin, N. Umetani, B. Bickel, in:, ACM, 2015.
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T. Martin, N. Umetani, B. Bickel, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1627
Design and fabrication of flexible rod meshes
J. Pérez, B. Thomaszewski, S. Coros, B. Bickel, J. Canabal, R. Sumner, M. Otaduy, in:, ACM, 2015.
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J. Pérez, B. Thomaszewski, S. Coros, B. Bickel, J. Canabal, R. Sumner, M. Otaduy, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1628 |
Microstructures to control elasticity in 3D printing
C. Schumacher, B. Bickel, J. Rys, S. Marschner, C. Daraio, M. Gross, in:, ACM, 2015.
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C. Schumacher, B. Bickel, J. Rys, S. Marschner, C. Daraio, M. Gross, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1630 |
Learning shape placements by example
P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, in:, ACM, 2015.
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P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1632 |
A stream function solver for liquid simulations
R. Ando, N. Thuerey, C.J. Wojtan, in:, ACM, 2015.
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R. Ando, N. Thuerey, C.J. Wojtan, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1633 |
High-resolution brittle fracture simulation with boundary elements
D. Hahn, C.J. Wojtan, in:, ACM, 2015.
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D. Hahn, C.J. Wojtan, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1634 |
Double bubbles sans toil and trouble: discrete circulation-preserving vortex sheets for soap films and foams
F. Da, C. Batty, C.J. Wojtan, E. Grinspun, in:, ACM, 2015.
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F. Da, C. Batty, C.J. Wojtan, E. Grinspun, in:, ACM, 2015.
2015 | Journal Article | IST-REx-ID: 1635 |
Discrete Ricci curvature bounds for Bernoulli-Laplace and random transposition models
M. Erbar, J. Maas, P. Tetali, Annales de La Faculté Des Sciences de Toulouse 24 (2015) 781–800.
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M. Erbar, J. Maas, P. Tetali, Annales de La Faculté Des Sciences de Toulouse 24 (2015) 781–800.
2015 | Conference Paper | IST-REx-ID: 1636 |
Effectiveness of structural restrictions for hybrid CSPs
V. Kolmogorov, M. Rolinek, R. Takhanov, in:, 26th International Symposium, Springer Nature, 2015, pp. 566–577.
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| arXiv
V. Kolmogorov, M. Rolinek, R. Takhanov, in:, 26th International Symposium, Springer Nature, 2015, pp. 566–577.
2015 | Conference Paper | IST-REx-ID: 1637 |
The complexity of general-valued CSPs
V. Kolmogorov, A. Krokhin, M. Rolinek, in:, IEEE, 2015, pp. 1246–1258.
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V. Kolmogorov, A. Krokhin, M. Rolinek, in:, IEEE, 2015, pp. 1246–1258.
2015 | Journal Article | IST-REx-ID: 1638
A giant molecular proton pump: structure and mechanism of respiratory complex I
L.A. Sazanov, Nature Reviews Molecular Cell Biology 16 (2015) 375–388.
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L.A. Sazanov, Nature Reviews Molecular Cell Biology 16 (2015) 375–388.
2015 | Journal Article | IST-REx-ID: 1639 |
A generalized model for optimal transport of images including dissipation and density modulation
J. Maas, M. Rumpf, C. Schönlieb, S. Simon, ESAIM: Mathematical Modelling and Numerical Analysis 49 (2015) 1745–1769.
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| arXiv
J. Maas, M. Rumpf, C. Schönlieb, S. Simon, ESAIM: Mathematical Modelling and Numerical Analysis 49 (2015) 1745–1769.