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4170 Publications
2012 | Journal Article | IST-REx-ID: 3246
Cell adhesion in embryo morphogenesis
V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.
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V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.
2012 | Journal Article | IST-REx-ID: 3247
Remaining genetic diversity in Brazilian Merganser (Mergus octosetaceus)
S. Vilaça, R.A. Fernandes Redondo, L. Lins, F. Santos, Conservation Genetics 13 (2012) 293–298.
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S. Vilaça, R.A. Fernandes Redondo, L. Lins, F. Santos, Conservation Genetics 13 (2012) 293–298.
2012 | Journal Article | IST-REx-ID: 3249
Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 413 (2012) 21–35.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 413 (2012) 21–35.
2012 | Conference Paper | IST-REx-ID: 3250
Cryptography from learning parity with noise
K.Z. Pietrzak, in:, Springer, 2012, pp. 99–114.
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K.Z. Pietrzak, in:, Springer, 2012, pp. 99–114.
2012 | Conference Paper | IST-REx-ID: 3251 |

Ideal abstractions for well structured transition systems
D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.
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D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.
2012 | Conference Paper | IST-REx-ID: 3252 |

Synthesizing protocols for digital contract signing
K. Chatterjee, V. Raman, in:, Springer, 2012, pp. 152–168.
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K. Chatterjee, V. Raman, in:, Springer, 2012, pp. 152–168.
2012 | Conference Paper | IST-REx-ID: 3253
Abstract domains for automated reasoning about list manipulating programs with infinite data
A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2012, pp. 1–22.
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A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2012, pp. 1–22.
2012 | Journal Article | IST-REx-ID: 3254
The complexity of stochastic Müller games
K. Chatterjee, Information and Computation 211 (2012) 29–48.
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K. Chatterjee, Information and Computation 211 (2012) 29–48.
2012 | Conference Paper | IST-REx-ID: 3255 |

Games and Markov decision processes with mean payoff parity and energy parity objectives
K. Chatterjee, L. Doyen, in:, Springer, 2012, pp. 37–46.
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K. Chatterjee, L. Doyen, in:, Springer, 2012, pp. 37–46.
2012 | Journal Article | IST-REx-ID: 3256 |

Dual complexes of cubical subdivisions of ℝn
H. Edelsbrunner, M. Kerber, Discrete & Computational Geometry 47 (2012) 393–414.
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H. Edelsbrunner, M. Kerber, Discrete & Computational Geometry 47 (2012) 393–414.
2012 | Journal Article | IST-REx-ID: 3257 |

Generalized roof duality and bisubmodular functions
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 416–426.
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| arXiv
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 416–426.
2012 | Journal Article | IST-REx-ID: 3258 |

Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons
S. Kim, J. Guzmán, H. Hu, P.M. Jonas, Nature Neuroscience 15 (2012) 600–606.
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S. Kim, J. Guzmán, H. Hu, P.M. Jonas, Nature Neuroscience 15 (2012) 600–606.
2012 | Journal Article | IST-REx-ID: 3260 |

Evolutionary dynamics of biological auctions
K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.
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K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.
2012 | Journal Article | IST-REx-ID: 3262 |

Optimizing information flow in small genetic networks. III. A self-interacting gene
G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
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G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 85 (2012).
2012 | Conference Paper | IST-REx-ID: 3265
Image segmentation by figure-ground composition into maximal cliques
A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
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A. Ion, J. Carreira, C. Sminchisescu, in:, IEEE, 2012.
2012 | Journal Article | IST-REx-ID: 3274
A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil
G. Rieckh, W. Kreuzer, H. Waubke, P. Balazs, Engineering Analysis with Boundary Elements 36 (2012) 960–967.
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| DOI
G. Rieckh, W. Kreuzer, H. Waubke, P. Balazs, Engineering Analysis with Boundary Elements 36 (2012) 960–967.
2012 | Book Chapter | IST-REx-ID: 3277
Can the evolution of multicellularity be anticipated in the exploration of the solar system?
H. de Vladar, J. Chela Flores, in:, Life on Earth and Other Planetary Bodies, Springer, 2012, pp. 387–405.
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H. de Vladar, J. Chela Flores, in:, Life on Earth and Other Planetary Bodies, Springer, 2012, pp. 387–405.
2012 | Conference Paper | IST-REx-ID: 3279
Hardness preserving constructions of pseudorandom functions
A. Jain, K.Z. Pietrzak, A. Tentes, in:, Springer, 2012, pp. 369–382.
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A. Jain, K.Z. Pietrzak, A. Tentes, in:, Springer, 2012, pp. 369–382.
2012 | Conference Paper | IST-REx-ID: 3280 |

Subspace LWE
K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
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K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.
2012 | Conference Paper | IST-REx-ID: 3281
Lossy functions do not amplify well
K.Z. Pietrzak, A. Rosen, G. Segev, in:, Springer, 2012, pp. 458–475.
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K.Z. Pietrzak, A. Rosen, G. Segev, in:, Springer, 2012, pp. 458–475.
2012 | Conference Paper | IST-REx-ID: 3282 |

Message authentication, revisited
Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
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Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.
2012 | Journal Article | IST-REx-ID: 3289 |

A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization
A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
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A. Pereira, F. Leite, B. Brasil, J. Soares Martins, A. Torres, P. Pimenta, T. Souto Padrón, P. Tranktman, P. Ferreira, E. Kroon, C. Bonjardim, Journal of Virology 86 (2012) 172–184.
2012 | Journal Article | IST-REx-ID: 3310 |

A point calculus for interlevel set homology
P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
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P. Bendich, S. Cabello, H. Edelsbrunner, Pattern Recognition Letters 33 (2012) 1436–1444.
2012 | Journal Article | IST-REx-ID: 3314
Discounting and averaging in games across time scales
K. Chatterjee, R. Majumdar, International Journal of Foundations of Computer Science 23 (2012) 609–625.
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K. Chatterjee, R. Majumdar, International Journal of Foundations of Computer Science 23 (2012) 609–625.
2012 | Journal Article | IST-REx-ID: 3317 |

Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses
E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
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E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.
2012 | Journal Article | IST-REx-ID: 3331 |

A worst case bound for topology computation of algebraic curves
M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
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M. Kerber, M. Sagraloff, Journal of Symbolic Computation 47 (2012) 239–258.
2012 | Conference Paper | IST-REx-ID: 3341 |

Robustness of structurally equivalent concurrent parity games
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
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| arXiv
K. Chatterjee, in:, Springer, 2012, pp. 270–285.
2012 | Journal Article | IST-REx-ID: 493 |

Review of the BCI competition IV
M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
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M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner, R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H. Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers in Neuroscience 6 (2012).
2012 | Journal Article | IST-REx-ID: 494
Translating to Co-Büchi made tight, unified, and useful
U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13 (2012).
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| DOI
U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13 (2012).
2012 | Conference Paper | IST-REx-ID: 495 |

A Myhill Nerode theorem for automata with advice
A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012, Open Publishing Association, 2012, pp. 238–246.
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A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012, Open Publishing Association, 2012, pp. 238–246.
2012 | Conference Paper | IST-REx-ID: 496 |

Interpretations in trees with countably many branches
A. Rabinovich, S. Rubin, in:, IEEE, 2012.
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A. Rabinovich, S. Rubin, in:, IEEE, 2012.
2012 | Conference Paper | IST-REx-ID: 497 |

Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 167–182.
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K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 167–182.
2012 | Journal Article | IST-REx-ID: 498 |

Predicting local adaptation in fragmented plant populations: Implications for restoration genetics
M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
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M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012) 913–924.
2012 | Journal Article | IST-REx-ID: 506 |

Cell migration: Fibroblasts find a new way to get ahead
M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
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M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
2012 | Technical Report | IST-REx-ID: 5377 |

Mean-payoff pushdown games
K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
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| DOI
K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
2012 | Technical Report | IST-REx-ID: 5378 |

Faster algorithms for alternating refinement relations
K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement Relations, IST Austria, 2012.
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K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement Relations, IST Austria, 2012.
2012 | Technical Report | IST-REx-ID: 5396 |

Approximating marginals using discrete energy minimization
F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete Energy Minimization, IST Austria, 2012.
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F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete Energy Minimization, IST Austria, 2012.
2012 | Report | IST-REx-ID: 5398 |

Actual state of research data @ ISTAustria
J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
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J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
2012 | Book Chapter | IST-REx-ID: 5745 |

Improved Single Pass Algorithms for Resolution Proof Reduction
A. Gupta, in:, Automated Technology for Verification and Analysis, Springer Berlin Heidelberg, Berlin, Heidelberg, 2012, pp. 107–121.
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A. Gupta, in:, Automated Technology for Verification and Analysis, Springer Berlin Heidelberg, Berlin, Heidelberg, 2012, pp. 107–121.
2012 | Journal Article | IST-REx-ID: 6588 |

Elementary solutions of the Bernstein problem on two intervals
F. Pausinger, Journal of Mathematical Physics, Analysis, Geometry 8 (2012) 63–78.
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F. Pausinger, Journal of Mathematical Physics, Analysis, Geometry 8 (2012) 63–78.
2012 | Conference Paper | IST-REx-ID: 1384 |

Conditional model checking: A technique to pass information between verifiers
D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.
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D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.
2012 | Conference Paper | IST-REx-ID: 2048 |

Practical leakage-resilient symmetric cryptography
S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.
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S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.
2012 | Conference Paper | IST-REx-ID: 2049 |

Lapin: An efficient authentication protocol based on ring-LPN
S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.
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S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.
2012 | Journal Article | IST-REx-ID: 2263 |

A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
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H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
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| PubMed | Europe PMC
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
2012 | Journal Article | IST-REx-ID: 2318 |

Absence of bound states implies non-negativity of the scattering length
R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
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R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
2012 | Journal Article | IST-REx-ID: 2411 |

A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
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I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
2012 | Conference Paper | IST-REx-ID: 2715 |

Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.
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K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.
2012 | Journal Article | IST-REx-ID: 9451 |

Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
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| PubMed | Europe PMC
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
2012 | Journal Article | IST-REx-ID: 9497 |

Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
D. Coleman-Derr, D. Zilberman, PLoS Genetics 8 (2012).
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D. Coleman-Derr, D. Zilberman, PLoS Genetics 8 (2012).