---
_id: '2249'
abstract:
- lang: eng
  text: The unfolded protein response (UPR) is a signaling network triggered by overload
    of protein-folding demand in the endoplasmic reticulum (ER), a condition termed
    ER stress. The UPR is critical for growth and development; nonetheless, connections
    between the UPR and other cellular regulatory processes remain largely unknown.
    Here, we identify a link between the UPR and the phytohormone auxin, a master
    regulator of plant physiology. We show that ER stress triggers down-regulation
    of auxin receptors and transporters in Arabidopsis thaliana. We also demonstrate
    that an Arabidopsis mutant of a conserved ER stress sensor IRE1 exhibits defects
    in the auxin response and levels. These data not only support that the plant IRE1
    is required for auxin homeostasis, they also reveal a species-specific feature
    of IRE1 in multicellular eukaryotes. Furthermore, by establishing that UPR activation
    is reduced in mutants of ER-localized auxin transporters, including PIN5, we define
    a long-neglected biological significance of ER-based auxin regulation. We further
    examine the functional relationship of IRE1 and PIN5 by showing that an ire1 pin5
    triple mutant enhances defects of UPR activation and auxin homeostasis in ire1
    or pin5. Our results imply that the plant UPR has evolved a hormone-dependent
    strategy for coordinating ER function with physiological processes.
article_processing_charge: No
author:
- first_name: Yani
  full_name: Chen, Yani
  last_name: Chen
- first_name: Kyaw
  full_name: Aung, Kyaw
  last_name: Aung
- first_name: Jakub
  full_name: Rolčík, Jakub
  last_name: Rolčík
- first_name: Kathryn
  full_name: Walicki, Kathryn
  last_name: Walicki
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Federica
  full_name: Brandizzí, Federica
  last_name: Brandizzí
citation:
  ama: Chen Y, Aung K, Rolčík J, Walicki K, Friml J, Brandizzí F. Inter-regulation
    of the unfolded protein response and auxin signaling. <i>Plant Journal</i>. 2014;77(1):97-107.
    doi:<a href="https://doi.org/10.1111/tpj.12373">10.1111/tpj.12373</a>
  apa: Chen, Y., Aung, K., Rolčík, J., Walicki, K., Friml, J., &#38; Brandizzí, F.
    (2014). Inter-regulation of the unfolded protein response and auxin signaling.
    <i>Plant Journal</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/tpj.12373">https://doi.org/10.1111/tpj.12373</a>
  chicago: Chen, Yani, Kyaw Aung, Jakub Rolčík, Kathryn Walicki, Jiří Friml, and Federica
    Brandizzí. “Inter-Regulation of the Unfolded Protein Response and Auxin Signaling.”
    <i>Plant Journal</i>. Wiley-Blackwell, 2014. <a href="https://doi.org/10.1111/tpj.12373">https://doi.org/10.1111/tpj.12373</a>.
  ieee: Y. Chen, K. Aung, J. Rolčík, K. Walicki, J. Friml, and F. Brandizzí, “Inter-regulation
    of the unfolded protein response and auxin signaling,” <i>Plant Journal</i>, vol.
    77, no. 1. Wiley-Blackwell, pp. 97–107, 2014.
  ista: Chen Y, Aung K, Rolčík J, Walicki K, Friml J, Brandizzí F. 2014. Inter-regulation
    of the unfolded protein response and auxin signaling. Plant Journal. 77(1), 97–107.
  mla: Chen, Yani, et al. “Inter-Regulation of the Unfolded Protein Response and Auxin
    Signaling.” <i>Plant Journal</i>, vol. 77, no. 1, Wiley-Blackwell, 2014, pp. 97–107,
    doi:<a href="https://doi.org/10.1111/tpj.12373">10.1111/tpj.12373</a>.
  short: Y. Chen, K. Aung, J. Rolčík, K. Walicki, J. Friml, F. Brandizzí, Plant Journal
    77 (2014) 97–107.
date_created: 2018-12-11T11:56:34Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2026-04-16T10:08:30Z
day: '01'
department:
- _id: JiFr
doi: 10.1111/tpj.12373
external_id:
  isi:
  - '000328661300008'
fulldoi: https://doi.org/10.1111/tpj.12373
intvolume: '        77'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3981873/
month: '01'
oa: 1
oa_version: Submitted Version
page: 97 - 107
publication: Plant Journal
publication_identifier:
  issn:
  - 0960-7412
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4699'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inter-regulation of the unfolded protein response and auxin signaling
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 77
year: '2014'
...
---
_id: '2253'
abstract:
- lang: eng
  text: Plant growth is achieved predominantly by cellular elongation, which is thought
    to be controlled on several levels by apoplastic auxin. Auxin export into the
    apoplast is achieved by plasma membrane efflux catalysts of the PIN-FORMED (PIN)
    and ATP-binding cassette protein subfamily B/phosphor- glycoprotein (ABCB/PGP)
    classes; the latter were shown to depend on interaction with the FKBP42, TWISTED
    DWARF1 (TWD1). Here by using a transgenic approach in combination with phenotypical,
    biochemical and cell biological analyses we demonstrate the importance of a putative
    C-terminal in-plane membrane anchor of TWD1 in the regulation of ABCB-mediated
    auxin transport. In contrast with dwarfed twd1 loss-of-function alleles, TWD1
    gain-of-function lines that lack a putative in-plane membrane anchor (HA-TWD1-Ct)
    show hypermorphic plant architecture, characterized by enhanced stem length and
    leaf surface but reduced shoot branching. Greater hypocotyl length is the result
    of enhanced cell elongation that correlates with reduced polar auxin transport
    capacity for HA-TWD1-Ct. As a consequence, HA-TWD1-Ct displays higher hypocotyl
    auxin accumulation, which is shown to result in elevated auxin-induced cell elongation
    rates. Our data highlight the importance of C-terminal membrane anchoring for
    TWD1 action, which is required for specific regulation of ABCB-mediated auxin
    transport. These data support a model in which TWD1 controls lateral ABCB1-mediated
    export into the apoplast, which is required for auxin-mediated cell elongation.
article_processing_charge: No
article_type: original
author:
- first_name: Aurélien
  full_name: Bailly, Aurélien
  last_name: Bailly
- first_name: Bangjun
  full_name: Wang, Bangjun
  last_name: Wang
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Stephan
  full_name: Pollmann, Stephan
  last_name: Pollmann
- first_name: Daniel
  full_name: Schenck, Daniel
  last_name: Schenck
- first_name: Hartwig
  full_name: Lüthen, Hartwig
  last_name: Lüthen
- first_name: Alexander
  full_name: Schulz, Alexander
  last_name: Schulz
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Markus
  full_name: Geisler, Markus
  last_name: Geisler
citation:
  ama: Bailly A, Wang B, Zwiewka M, et al. Expression of TWISTED DWARF1 lacking its
    in-plane membrane anchor leads to increased cell elongation and hypermorphic growth.
    <i>Plant Journal</i>. 2014;77(1):108-118. doi:<a href="https://doi.org/10.1111/tpj.12369">10.1111/tpj.12369</a>
  apa: Bailly, A., Wang, B., Zwiewka, M., Pollmann, S., Schenck, D., Lüthen, H., …
    Geisler, M. (2014). Expression of TWISTED DWARF1 lacking its in-plane membrane
    anchor leads to increased cell elongation and hypermorphic growth. <i>Plant Journal</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1111/tpj.12369">https://doi.org/10.1111/tpj.12369</a>
  chicago: Bailly, Aurélien, Bangjun Wang, Marta Zwiewka, Stephan Pollmann, Daniel
    Schenck, Hartwig Lüthen, Alexander Schulz, Jiří Friml, and Markus Geisler. “Expression
    of TWISTED DWARF1 Lacking Its In-Plane Membrane Anchor Leads to Increased Cell
    Elongation and Hypermorphic Growth.” <i>Plant Journal</i>. Wiley-Blackwell, 2014.
    <a href="https://doi.org/10.1111/tpj.12369">https://doi.org/10.1111/tpj.12369</a>.
  ieee: A. Bailly <i>et al.</i>, “Expression of TWISTED DWARF1 lacking its in-plane
    membrane anchor leads to increased cell elongation and hypermorphic growth,” <i>Plant
    Journal</i>, vol. 77, no. 1. Wiley-Blackwell, pp. 108–118, 2014.
  ista: Bailly A, Wang B, Zwiewka M, Pollmann S, Schenck D, Lüthen H, Schulz A, Friml
    J, Geisler M. 2014. Expression of TWISTED DWARF1 lacking its in-plane membrane
    anchor leads to increased cell elongation and hypermorphic growth. Plant Journal.
    77(1), 108–118.
  mla: Bailly, Aurélien, et al. “Expression of TWISTED DWARF1 Lacking Its In-Plane
    Membrane Anchor Leads to Increased Cell Elongation and Hypermorphic Growth.” <i>Plant
    Journal</i>, vol. 77, no. 1, Wiley-Blackwell, 2014, pp. 108–18, doi:<a href="https://doi.org/10.1111/tpj.12369">10.1111/tpj.12369</a>.
  short: A. Bailly, B. Wang, M. Zwiewka, S. Pollmann, D. Schenck, H. Lüthen, A. Schulz,
    J. Friml, M. Geisler, Plant Journal 77 (2014) 108–118.
date_created: 2018-12-11T11:56:35Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2026-06-18T18:33:25Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/tpj.12369
external_id:
  isi:
  - '000328661300009'
fulldoi: https://doi.org/10.1111/tpj.12369
intvolume: '        77'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1111/tpj.12369
month: '01'
oa: 1
oa_version: Published Version
page: 108 - 118
project:
- _id: 256BDAB0-B435-11E9-9278-68D0E5697425
  name: Innovationsförderung in der Grenzregion Österreich – Tschechische Republik
    durch die Schaffung von Synergien im Bereich der Forschungsinfrastruktur
publication: Plant Journal
publication_identifier:
  issn:
  - 0960-7412
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4694'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Expression of TWISTED DWARF1 lacking its in-plane membrane anchor leads to
  increased cell elongation and hypermorphic growth
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 77
year: '2014'
...
---
_id: '2188'
abstract:
- lang: eng
  text: Although plant and animal cells use a similar core mechanism to deliver proteins
    to the plasma membrane, their different lifestyle, body organization and specific
    cell structures resulted in the acquisition of regulatory mechanisms that vary
    in the two kingdoms. In particular, cell polarity regulators do not seem to be
    conserved, because genes encoding key components are absent in plant genomes.
    In plants, the broad knowledge on polarity derives from the study of auxin transporters,
    the PIN-FORMED proteins, in the model plant Arabidopsis thaliana. In animals,
    much information is provided from the study of polarity in epithelial cells that
    exhibit basolateral and luminal apical polarities, separated by tight junctions.
    In this review, we summarize the similarities and differences of the polarization
    mechanisms between plants and animals and survey the main genetic approaches that
    have been used to characterize new genes involved in polarity establishment in
    plants, including the frequently used forward and reverse genetics screens as
    well as a novel chemical genetics approach that is expected to overcome the limitation
    of classical genetics methods.
acknowledgement: "This work was supported by a grant from the Research Foundation-Flanders
  (Odysseus).\r\n\r\n"
article_number: '140017'
article_processing_charge: No
author:
- first_name: Urszula
  full_name: Kania, Urszula
  id: 4AE5C486-F248-11E8-B48F-1D18A9856A87
  last_name: Kania
- first_name: Matyas
  full_name: Fendrych, Matyas
  last_name: Fendrych
- first_name: Jiřĺ
  full_name: Friml, Jiřĺ
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Kania U, Fendrych M, Friml J. Polar delivery in plants; commonalities and differences
    to animal epithelial cells. <i>Open Biology</i>. 2014;4(APRIL). doi:<a href="https://doi.org/10.1098/rsob.140017">10.1098/rsob.140017</a>
  apa: Kania, U., Fendrych, M., &#38; Friml, J. (2014). Polar delivery in plants;
    commonalities and differences to animal epithelial cells. <i>Open Biology</i>.
    Royal Society. <a href="https://doi.org/10.1098/rsob.140017">https://doi.org/10.1098/rsob.140017</a>
  chicago: Kania, Urszula, Matyas Fendrych, and Jiří Friml. “Polar Delivery in Plants;
    Commonalities and Differences to Animal Epithelial Cells.” <i>Open Biology</i>.
    Royal Society, 2014. <a href="https://doi.org/10.1098/rsob.140017">https://doi.org/10.1098/rsob.140017</a>.
  ieee: U. Kania, M. Fendrych, and J. Friml, “Polar delivery in plants; commonalities
    and differences to animal epithelial cells,” <i>Open Biology</i>, vol. 4, no.
    APRIL. Royal Society, 2014.
  ista: Kania U, Fendrych M, Friml J. 2014. Polar delivery in plants; commonalities
    and differences to animal epithelial cells. Open Biology. 4(APRIL), 140017.
  mla: Kania, Urszula, et al. “Polar Delivery in Plants; Commonalities and Differences
    to Animal Epithelial Cells.” <i>Open Biology</i>, vol. 4, no. APRIL, 140017, Royal
    Society, 2014, doi:<a href="https://doi.org/10.1098/rsob.140017">10.1098/rsob.140017</a>.
  short: U. Kania, M. Fendrych, J. Friml, Open Biology 4 (2014).
corr_author: '1'
date_created: 2018-12-11T11:56:13Z
date_published: 2014-04-16T00:00:00Z
date_updated: 2025-09-29T11:32:17Z
day: '16'
ddc:
- '570'
department:
- _id: JiFr
doi: 10.1098/rsob.140017
external_id:
  isi:
  - '000335813800006'
file:
- access_level: open_access
  checksum: 2020627feff36cf0799167c84149fa75
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:40Z
  date_updated: 2020-07-14T12:45:31Z
  file_id: '5025'
  file_name: IST-2016-441-v1+1_140017.full.pdf
  file_size: 682570
  relation: main_file
file_date_updated: 2020-07-14T12:45:31Z
fulldoi: https://doi.org/10.1098/rsob.140017
has_accepted_license: '1'
intvolume: '         4'
isi: 1
issue: APRIL
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Open Biology
publication_status: published
publisher: Royal Society
publist_id: '4786'
pubrep_id: '441'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Polar delivery in plants; commonalities and differences to animal epithelial
  cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 4
year: '2014'
...
---
_id: '1852'
abstract:
- lang: eng
  text: To control morphogenesis, molecular regulatory networks have to interfere
    with the mechanical properties of the individual cells of developing organs and
    tissues, but how this is achieved is not well known. We study this issue here
    in the shoot meristem of higher plants, a group of undifferentiated cells where
    complex changes in growth rates and directions lead to the continuous formation
    of new organs [1, 2]. Here, we show that the plant hormone auxin plays an important
    role in this process via a dual, local effect on the extracellular matrix, the
    cell wall, which determines cell shape. Our study reveals that auxin not only
    causes a limited reduction in wall stiffness but also directly interferes with
    wall anisotropy via the regulation of cortical microtubule dynamics. We further
    show that to induce growth isotropy and organ outgrowth, auxin somehow interferes
    with the cortical microtubule-ordering activity of a network of proteins, including
    AUXIN BINDING PROTEIN 1 and KATANIN 1. Numerical simulations further indicate
    that the induced isotropy is sufficient to amplify the effects of the relatively
    minor changes in wall stiffness to promote organogenesis and the establishment
    of new growth axes in a robust manner.
acknowledgement: 'This work was funded by grants from EraSysBio+ (iSAM) and ERC (Morphodynamics). '
article_processing_charge: No
author:
- first_name: Massimiliano
  full_name: Sassi, Massimiliano
  last_name: Sassi
- first_name: Olivier
  full_name: Ali, Olivier
  last_name: Ali
- first_name: Frédéric
  full_name: Boudon, Frédéric
  last_name: Boudon
- first_name: Gladys
  full_name: Cloarec, Gladys
  last_name: Cloarec
- first_name: Ursula
  full_name: Abad, Ursula
  last_name: Abad
- first_name: Coralie
  full_name: Cellier, Coralie
  last_name: Cellier
- first_name: Xu
  full_name: Chen, Xu
  id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Benjamin
  full_name: Gilles, Benjamin
  last_name: Gilles
- first_name: Pascale
  full_name: Milani, Pascale
  last_name: Milani
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Teva
  full_name: Vernoux, Teva
  last_name: Vernoux
- first_name: Christophe
  full_name: Godin, Christophe
  last_name: Godin
- first_name: Olivier
  full_name: Hamant, Olivier
  last_name: Hamant
- first_name: Jan
  full_name: Traas, Jan
  last_name: Traas
citation:
  ama: Sassi M, Ali O, Boudon F, et al. An auxin-mediated shift toward growth isotropy
    promotes organ formation at the shoot meristem in Arabidopsis. <i>Current Biology</i>.
    2014;24(19):2335-2342. doi:<a href="https://doi.org/10.1016/j.cub.2014.08.036">10.1016/j.cub.2014.08.036</a>
  apa: Sassi, M., Ali, O., Boudon, F., Cloarec, G., Abad, U., Cellier, C., … Traas,
    J. (2014). An auxin-mediated shift toward growth isotropy promotes organ formation
    at the shoot meristem in Arabidopsis. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2014.08.036">https://doi.org/10.1016/j.cub.2014.08.036</a>
  chicago: Sassi, Massimiliano, Olivier Ali, Frédéric Boudon, Gladys Cloarec, Ursula
    Abad, Coralie Cellier, Xu Chen, et al. “An Auxin-Mediated Shift toward Growth
    Isotropy Promotes Organ Formation at the Shoot Meristem in Arabidopsis.” <i>Current
    Biology</i>. Cell Press, 2014. <a href="https://doi.org/10.1016/j.cub.2014.08.036">https://doi.org/10.1016/j.cub.2014.08.036</a>.
  ieee: M. Sassi <i>et al.</i>, “An auxin-mediated shift toward growth isotropy promotes
    organ formation at the shoot meristem in Arabidopsis,” <i>Current Biology</i>,
    vol. 24, no. 19. Cell Press, pp. 2335–2342, 2014.
  ista: Sassi M, Ali O, Boudon F, Cloarec G, Abad U, Cellier C, Chen X, Gilles B,
    Milani P, Friml J, Vernoux T, Godin C, Hamant O, Traas J. 2014. An auxin-mediated
    shift toward growth isotropy promotes organ formation at the shoot meristem in
    Arabidopsis. Current Biology. 24(19), 2335–2342.
  mla: Sassi, Massimiliano, et al. “An Auxin-Mediated Shift toward Growth Isotropy
    Promotes Organ Formation at the Shoot Meristem in Arabidopsis.” <i>Current Biology</i>,
    vol. 24, no. 19, Cell Press, 2014, pp. 2335–42, doi:<a href="https://doi.org/10.1016/j.cub.2014.08.036">10.1016/j.cub.2014.08.036</a>.
  short: M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B.
    Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant, J. Traas, Current
    Biology 24 (2014) 2335–2342.
date_created: 2018-12-11T11:54:22Z
date_published: 2014-10-06T00:00:00Z
date_updated: 2025-09-29T13:10:45Z
day: '06'
department:
- _id: JiFr
doi: 10.1016/j.cub.2014.08.036
external_id:
  isi:
  - '000342747600031'
fulldoi: https://doi.org/10.1016/j.cub.2014.08.036
intvolume: '        24'
isi: 1
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal.archives-ouvertes.fr/hal-01074821
month: '10'
oa: 1
oa_version: Submitted Version
page: 2335 - 2342
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '5248'
quality_controlled: '1'
scopus_import: '1'
status: public
title: An auxin-mediated shift toward growth isotropy promotes organ formation at
  the shoot meristem in Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 24
year: '2014'
...
---
_id: '1862'
abstract:
- lang: eng
  text: The prominent and evolutionarily ancient role of the plant hormone auxin is
    the regulation of cell expansion. Cell expansion requires ordered arrangement
    of the cytoskeleton but molecular mechanisms underlying its regulation by signalling
    molecules including auxin are unknown. Here we show in the model plant Arabidopsis
    thaliana that in elongating cells exogenous application of auxin or redistribution
    of endogenous auxin induces very rapid microtubule re-orientation from transverse
    to longitudinal, coherent with the inhibition of cell expansion. This fast auxin
    effect requires auxin binding protein 1 (ABP1) and involves a contribution of
    downstream signalling components such as ROP6 GTPase, ROP-interactive protein
    RIC1 and the microtubule-severing protein katanin. These components are required
    for rapid auxin-and ABP1-mediated re-orientation of microtubules to regulate cell
    elongation in roots and dark-grown hypocotyls as well as asymmetric growth during
    gravitropic responses.
acknowledgement: We thank R. Dixit for performing complementary experiments, D. W.
  Ehrhardt and T. Hashimoto for providing the seeds of TUB6–RFP and EB1b–GFP respectively,
  E. Zazimalova, J. Petrasek and M. Fendrych for discussing the manuscript and J.
  Leung for text optimization. This work was supported by the European Research Council
  (project ERC-2011-StG-20101109-PSDP, to J.F.), ANR blanc AuxiWall project (ANR-11-BSV5-0007,
  to C.P.-R. and L.G.) and the Agency for Innovation by Science and Technology (IWT)
  (to H.R.). This work benefited from the facilities and expertise of the Imagif Cell
  Biology platform (http://www.imagif.cnrs.fr), which is supported by the Conseil
  Général de l’Essonne.
article_processing_charge: No
article_type: original
author:
- first_name: Xu
  full_name: Chen, Xu
  id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Laurie
  full_name: Grandont, Laurie
  last_name: Grandont
- first_name: Hongjiang
  full_name: Li, Hongjiang
  id: 33CA54A6-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0001-5039-9660
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Sébastien
  full_name: Paque, Sébastien
  last_name: Paque
- first_name: Anas
  full_name: Abuzeineh, Anas
  last_name: Abuzeineh
- first_name: Hana
  full_name: Rakusova, Hana
  id: 4CAAA450-78D2-11EA-8E57-B40A396E08BA
  last_name: Rakusova
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Catherine
  full_name: Perrot Rechenmann, Catherine
  last_name: Perrot Rechenmann
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Chen X, Grandont L, Li H, et al. Inhibition of cell expansion by rapid ABP1-mediated
    auxin effect on microtubules. <i>Nature</i>. 2014;516(729):90-93. doi:<a href="https://doi.org/10.1038/nature13889">10.1038/nature13889</a>
  apa: Chen, X., Grandont, L., Li, H., Hauschild, R., Paque, S., Abuzeineh, A., …
    Friml, J. (2014). Inhibition of cell expansion by rapid ABP1-mediated auxin effect
    on microtubules. <i>Nature</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nature13889">https://doi.org/10.1038/nature13889</a>
  chicago: Chen, Xu, Laurie Grandont, Hongjiang Li, Robert Hauschild, Sébastien Paque,
    Anas Abuzeineh, Hana Rakusova, Eva Benková, Catherine Perrot Rechenmann, and Jiří
    Friml. “Inhibition of Cell Expansion by Rapid ABP1-Mediated Auxin Effect on Microtubules.”
    <i>Nature</i>. Nature Publishing Group, 2014. <a href="https://doi.org/10.1038/nature13889">https://doi.org/10.1038/nature13889</a>.
  ieee: X. Chen <i>et al.</i>, “Inhibition of cell expansion by rapid ABP1-mediated
    auxin effect on microtubules,” <i>Nature</i>, vol. 516, no. 729. Nature Publishing
    Group, pp. 90–93, 2014.
  ista: Chen X, Grandont L, Li H, Hauschild R, Paque S, Abuzeineh A, Rakusova H, Benková
    E, Perrot Rechenmann C, Friml J. 2014. Inhibition of cell expansion by rapid ABP1-mediated
    auxin effect on microtubules. Nature. 516(729), 90–93.
  mla: Chen, Xu, et al. “Inhibition of Cell Expansion by Rapid ABP1-Mediated Auxin
    Effect on Microtubules.” <i>Nature</i>, vol. 516, no. 729, Nature Publishing Group,
    2014, pp. 90–93, doi:<a href="https://doi.org/10.1038/nature13889">10.1038/nature13889</a>.
  short: X. Chen, L. Grandont, H. Li, R. Hauschild, S. Paque, A. Abuzeineh, H. Rakusova,
    E. Benková, C. Perrot Rechenmann, J. Friml, Nature 516 (2014) 90–93.
corr_author: '1'
date_created: 2018-12-11T11:54:25Z
date_published: 2014-12-04T00:00:00Z
date_updated: 2025-09-29T13:10:05Z
day: '04'
department:
- _id: JiFr
- _id: Bio
- _id: EvBe
doi: 10.1038/nature13889
ec_funded: 1
external_id:
  isi:
  - '000346310800045'
  pmid:
  - '25409144'
fulldoi: https://doi.org/10.1038/nature13889
intvolume: '       516'
isi: 1
issue: '729'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257754/
month: '12'
oa: 1
oa_version: Submitted Version
page: 90 - 93
pmid: 1
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Nature Publishing Group
publist_id: '5237'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inhibition of cell expansion by rapid ABP1-mediated auxin effect on microtubules
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 516
year: '2014'
...
---
_id: '1893'
abstract:
- lang: eng
  text: Phosphatidylinositol (PtdIns) is a structural phospholipid that can be phosphorylated
    into various lipid signaling molecules, designated polyphosphoinositides (PPIs).
    The reversible phosphorylation of PPIs on the 3, 4, or 5 position of inositol
    is performed by a set of organelle-specific kinases and phosphatases, and the
    characteristic head groups make these molecules ideal for regulating biological
    processes in time and space. In yeast and mammals, PtdIns3P and PtdIns(3,5)P2
    play crucial roles in trafficking toward the lytic compartments, whereas the role
    in plants is not yet fully understood. Here we identified the role of a land plant-specific
    subgroup of PPI phosphatases, the suppressor of actin 2 (SAC2) to SAC5, during
    vacuolar trafficking and morphogenesis in Arabidopsis thaliana. SAC2-SAC5 localize
    to the tonoplast along with PtdIns3P, the presumable product of their activity.
    In SAC gain- and loss-of-function mutants, the levels of PtdIns monophosphates
    and bisphosphates were changed, with opposite effects on the morphology of storage
    and lytic vacuoles, and the trafficking toward the vacuoles was defective. Moreover,
    multiple sac knockout mutants had an increased number of smaller storage and lytic
    vacuoles, whereas extralarge vacuoles were observed in the overexpression lines,
    correlating with various growth and developmental defects. The fragmented vacuolar
    phenotype of sac mutants could be mimicked by treating wild-type seedlings with
    PtdIns(3,5)P2, corroborating that this PPI is important for vacuole morphology.
    Taken together, these results provide evidence that PPIs, together with their
    metabolic enzymes SAC2-SAC5, are crucial for vacuolar trafficking and for vacuolar
    morphology and function in plants.
acknowledgement: This work was supported by grants from the Research Foundation-Flanders
  (Odysseus).
article_processing_charge: No
author:
- first_name: Petra
  full_name: Nováková, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Nováková
- first_name: Sibylle
  full_name: Hirsch, Sibylle
  last_name: Hirsch
- first_name: Elena
  full_name: Feraru, Elena
  last_name: Feraru
- first_name: Ricardo
  full_name: Tejos, Ricardo
  last_name: Tejos
- first_name: Ringo
  full_name: Van Wijk, Ringo
  last_name: Van Wijk
- first_name: Tom
  full_name: Viaene, Tom
  last_name: Viaene
- first_name: Mareike
  full_name: Heilmann, Mareike
  last_name: Heilmann
- first_name: Jennifer
  full_name: Lerche, Jennifer
  last_name: Lerche
- first_name: Riet
  full_name: De Rycke, Riet
  last_name: De Rycke
- first_name: Mugurel
  full_name: Feraru, Mugurel
  last_name: Feraru
- first_name: Peter
  full_name: Grones, Peter
  id: 399876EC-F248-11E8-B48F-1D18A9856A87
  last_name: Grones
- first_name: Marc
  full_name: Van Montagu, Marc
  last_name: Van Montagu
- first_name: Ingo
  full_name: Heilmann, Ingo
  last_name: Heilmann
- first_name: Teun
  full_name: Munnik, Teun
  last_name: Munnik
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Marhavá P, Hirsch S, Feraru E, et al. SAC phosphoinositide phosphatases at
    the tonoplast mediate vacuolar function in Arabidopsis. <i>PNAS</i>. 2014;111(7):2818-2823.
    doi:<a href="https://doi.org/10.1073/pnas.1324264111">10.1073/pnas.1324264111</a>
  apa: Marhavá, P., Hirsch, S., Feraru, E., Tejos, R., Van Wijk, R., Viaene, T., …
    Friml, J. (2014). SAC phosphoinositide phosphatases at the tonoplast mediate vacuolar
    function in Arabidopsis. <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1324264111">https://doi.org/10.1073/pnas.1324264111</a>
  chicago: Marhavá, Petra, Sibylle Hirsch, Elena Feraru, Ricardo Tejos, Ringo Van
    Wijk, Tom Viaene, Mareike Heilmann, et al. “SAC Phosphoinositide Phosphatases
    at the Tonoplast Mediate Vacuolar Function in Arabidopsis.” <i>PNAS</i>. National
    Academy of Sciences, 2014. <a href="https://doi.org/10.1073/pnas.1324264111">https://doi.org/10.1073/pnas.1324264111</a>.
  ieee: P. Marhavá <i>et al.</i>, “SAC phosphoinositide phosphatases at the tonoplast
    mediate vacuolar function in Arabidopsis,” <i>PNAS</i>, vol. 111, no. 7. National
    Academy of Sciences, pp. 2818–2823, 2014.
  ista: Marhavá P, Hirsch S, Feraru E, Tejos R, Van Wijk R, Viaene T, Heilmann M,
    Lerche J, De Rycke R, Feraru M, Grones P, Van Montagu M, Heilmann I, Munnik T,
    Friml J. 2014. SAC phosphoinositide phosphatases at the tonoplast mediate vacuolar
    function in Arabidopsis. PNAS. 111(7), 2818–2823.
  mla: Marhavá, Petra, et al. “SAC Phosphoinositide Phosphatases at the Tonoplast
    Mediate Vacuolar Function in Arabidopsis.” <i>PNAS</i>, vol. 111, no. 7, National
    Academy of Sciences, 2014, pp. 2818–23, doi:<a href="https://doi.org/10.1073/pnas.1324264111">10.1073/pnas.1324264111</a>.
  short: P. Marhavá, S. Hirsch, E. Feraru, R. Tejos, R. Van Wijk, T. Viaene, M. Heilmann,
    J. Lerche, R. De Rycke, M. Feraru, P. Grones, M. Van Montagu, I. Heilmann, T.
    Munnik, J. Friml, PNAS 111 (2014) 2818–2823.
corr_author: '1'
date_created: 2018-12-11T11:54:34Z
date_published: 2014-02-18T00:00:00Z
date_updated: 2025-09-29T13:05:44Z
day: '18'
department:
- _id: JiFr
doi: 10.1073/pnas.1324264111
ec_funded: 1
external_id:
  isi:
  - '000331396500082'
fulldoi: https://doi.org/10.1073/pnas.1324264111
intvolume: '       111'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3932866/
month: '02'
oa: 1
oa_version: Submitted Version
page: 2818 - 2823
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5202'
scopus_import: '1'
status: public
title: SAC phosphoinositide phosphatases at the tonoplast mediate vacuolar function
  in Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 111
year: '2014'
...
---
_id: '1897'
abstract:
- lang: eng
  text: GNOM is one of the most characterized membrane trafficking regulators in plants,
    with crucial roles in development. GNOM encodes an ARF-guanine nucleotide exchange
    factor (ARF-GEF) that activates small GTPases of the ARF (ADP ribosylation factor)
    class to mediate vesicle budding at endomembranes. The crucial role of GNOM in
    recycling of PIN auxin transporters and other proteins to the plasma membrane
    was identified in studies using the ARF-GEF inhibitor brefeldin A (BFA). GNOM,
    the most prominent regulator of recycling in plants, has been proposed to act
    and localize at so far elusive recycling endosomes. Here, we report the GNOM localization
    in context of its cellular function in Arabidopsis thaliana. State-of-the-art
    imaging, pharmacological interference, and ultrastructure analysis show that GNOM
    predominantly localizes to Golgi apparatus. Super-resolution confocal live imaging
    microscopy identified GNOM and its closest homolog GNOM-like 1 at distinct subdomains
    on Golgi cisternae. Short-term BFA treatment stabilizes GNOM at the Golgi apparatus,
    whereas prolonged exposures results in GNOM translocation to trans-Golgi network
    (TGN)/early endosomes (EEs). Malformed TGN/EE in gnom mutants suggests a role
    for GNOM in maintaining TGN/EE function. Our results redefine the subcellular
    action of GNOM and reevaluate the identity and function of recycling endosomes
    in plants.
acknowledgement: This work was supported by the Odysseus Program of the Research Foundation-Flanders
  (J.F.).
article_processing_charge: No
author:
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Marisa
  full_name: Otegui, Marisa
  last_name: Otegui
- first_name: Natsumaro
  full_name: Kutsuna, Natsumaro
  last_name: Kutsuna
- first_name: Riet
  full_name: De Rycke, Riet
  last_name: De Rycke
- first_name: Tomoko
  full_name: Dainobu, Tomoko
  last_name: Dainobu
- first_name: Michael
  full_name: Karampelias, Michael
  last_name: Karampelias
- first_name: Masaru
  full_name: Fujimoto, Masaru
  last_name: Fujimoto
- first_name: Elena
  full_name: Feraru, Elena
  last_name: Feraru
- first_name: Daisuke
  full_name: Miki, Daisuke
  last_name: Miki
- first_name: Hiroo
  full_name: Fukuda, Hiroo
  last_name: Fukuda
- first_name: Akihiko
  full_name: Nakano, Akihiko
  last_name: Nakano
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Naramoto S, Otegui M, Kutsuna N, et al. Insights into the localization and
    function of the membrane trafficking regulator GNOM ARF-GEF at the Golgi apparatus
    in Arabidopsis. <i>Plant Cell</i>. 2014;26(7):3062-3076. doi:<a href="https://doi.org/10.1105/tpc.114.125880">10.1105/tpc.114.125880</a>
  apa: Naramoto, S., Otegui, M., Kutsuna, N., De Rycke, R., Dainobu, T., Karampelias,
    M., … Friml, J. (2014). Insights into the localization and function of the membrane
    trafficking regulator GNOM ARF-GEF at the Golgi apparatus in Arabidopsis. <i>Plant
    Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.114.125880">https://doi.org/10.1105/tpc.114.125880</a>
  chicago: Naramoto, Satoshi, Marisa Otegui, Natsumaro Kutsuna, Riet De Rycke, Tomoko
    Dainobu, Michael Karampelias, Masaru Fujimoto, et al. “Insights into the Localization
    and Function of the Membrane Trafficking Regulator GNOM ARF-GEF at the Golgi Apparatus
    in Arabidopsis.” <i>Plant Cell</i>. American Society of Plant Biologists, 2014.
    <a href="https://doi.org/10.1105/tpc.114.125880">https://doi.org/10.1105/tpc.114.125880</a>.
  ieee: S. Naramoto <i>et al.</i>, “Insights into the localization and function of
    the membrane trafficking regulator GNOM ARF-GEF at the Golgi apparatus in Arabidopsis,”
    <i>Plant Cell</i>, vol. 26, no. 7. American Society of Plant Biologists, pp. 3062–3076,
    2014.
  ista: Naramoto S, Otegui M, Kutsuna N, De Rycke R, Dainobu T, Karampelias M, Fujimoto
    M, Feraru E, Miki D, Fukuda H, Nakano A, Friml J. 2014. Insights into the localization
    and function of the membrane trafficking regulator GNOM ARF-GEF at the Golgi apparatus
    in Arabidopsis. Plant Cell. 26(7), 3062–3076.
  mla: Naramoto, Satoshi, et al. “Insights into the Localization and Function of the
    Membrane Trafficking Regulator GNOM ARF-GEF at the Golgi Apparatus in Arabidopsis.”
    <i>Plant Cell</i>, vol. 26, no. 7, American Society of Plant Biologists, 2014,
    pp. 3062–76, doi:<a href="https://doi.org/10.1105/tpc.114.125880">10.1105/tpc.114.125880</a>.
  short: S. Naramoto, M. Otegui, N. Kutsuna, R. De Rycke, T. Dainobu, M. Karampelias,
    M. Fujimoto, E. Feraru, D. Miki, H. Fukuda, A. Nakano, J. Friml, Plant Cell 26
    (2014) 3062–3076.
date_created: 2018-12-11T11:54:36Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2025-09-29T13:04:06Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.114.125880
external_id:
  isi:
  - '000342076200027'
fulldoi: https://doi.org/10.1105/tpc.114.125880
intvolume: '        26'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4145132/
month: '07'
oa: 1
oa_version: Submitted Version
page: 3062 - 3076
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '5199'
scopus_import: '1'
status: public
title: Insights into the localization and function of the membrane trafficking regulator
  GNOM ARF-GEF at the Golgi apparatus in Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 26
year: '2014'
...
---
_id: '1901'
abstract:
- lang: eng
  text: In plants, the patterning of stem cell-enriched meristems requires a graded
    auxin response maximum that emerges from the concerted action of polar auxin transport,
    auxin biosynthesis, auxin metabolism, and cellular auxin response machinery. However,
    mechanisms underlying this auxin response maximum-mediated root stem cell maintenance
    are not fully understood. Here, we present unexpected evidence that WUSCHEL-RELATED
    HOMEOBOX 5 (WOX5) transcription factor modulates expression of auxin biosynthetic
    genes in the quiescent center (QC) of the root and thus provides a robust mechanism
    for the maintenance of auxin response maximum in the root tip. This WOX5 action
    is balanced through the activity of indole-3-acetic acid 17 (IAA17) auxin response
    repressor. Our combined genetic, cell biology, and computational modeling studies
    revealed a previously uncharacterized feedback loop linking WOX5-mediated auxin
    production to IAA17-dependent repression of auxin responses. This WOX5-IAA17 feedback
    circuit further assures the maintenance of auxin response maximum in the root
    tip and thereby contributes to the maintenance of distal stem cell (DSC) populations.
    Our experimental studies and in silico computer simulations both demonstrate that
    the WOX5-IAA17 feedback circuit is essential for the maintenance of auxin gradient
    in the root tip and the auxin-mediated root DSC differentiation.
acknowledgement: "This work was supported by funding from the projects CZ.1.07/2.3.00/20.0043
  and CZ.1.05/1.1.00/02.0068 (to CEITEC, Central European Institute of Technology)
  and the Odysseus program of the Research Foundation-Flanders to J.F\r\n"
article_processing_charge: No
author:
- first_name: Huiyu
  full_name: Tian, Huiyu
  last_name: Tian
- first_name: Krzysztof T
  full_name: Wabnik, Krzysztof T
  last_name: Wabnik
- first_name: Tiantian
  full_name: Niu, Tiantian
  last_name: Niu
- first_name: Hongjiang
  full_name: Li, Hongjiang
  last_name: Li
- first_name: Qianqian
  full_name: Yu, Qianqian
  last_name: Yu
- first_name: Stephan
  full_name: Pollmann, Stephan
  last_name: Pollmann
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Willy
  full_name: Govaerts, Willy
  last_name: Govaerts
- first_name: Jakub
  full_name: Rolčík, Jakub
  last_name: Rolčík
- first_name: Markus
  full_name: Geisler, Markus
  last_name: Geisler
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Zhaojun
  full_name: Ding, Zhaojun
  last_name: Ding
citation:
  ama: Tian H, Wabnik KT, Niu T, et al. WOX5-IAA17 feedback circuit-mediated cellular
    auxin response is crucial for the patterning of root stem cell niches in arabidopsis.
    <i>Molecular Plant</i>. 2014;7(2):277-289. doi:<a href="https://doi.org/10.1093/mp/sst118">10.1093/mp/sst118</a>
  apa: Tian, H., Wabnik, K. T., Niu, T., Li, H., Yu, Q., Pollmann, S., … Ding, Z.
    (2014). WOX5-IAA17 feedback circuit-mediated cellular auxin response is crucial
    for the patterning of root stem cell niches in arabidopsis. <i>Molecular Plant</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/mp/sst118">https://doi.org/10.1093/mp/sst118</a>
  chicago: Tian, Huiyu, Krzysztof T Wabnik, Tiantian Niu, Hongjiang Li, Qianqian Yu,
    Stephan Pollmann, Steffen Vanneste, et al. “WOX5-IAA17 Feedback Circuit-Mediated
    Cellular Auxin Response Is Crucial for the Patterning of Root Stem Cell Niches
    in Arabidopsis.” <i>Molecular Plant</i>. Oxford University Press, 2014. <a href="https://doi.org/10.1093/mp/sst118">https://doi.org/10.1093/mp/sst118</a>.
  ieee: H. Tian <i>et al.</i>, “WOX5-IAA17 feedback circuit-mediated cellular auxin
    response is crucial for the patterning of root stem cell niches in arabidopsis,”
    <i>Molecular Plant</i>, vol. 7, no. 2. Oxford University Press, pp. 277–289, 2014.
  ista: Tian H, Wabnik KT, Niu T, Li H, Yu Q, Pollmann S, Vanneste S, Govaerts W,
    Rolčík J, Geisler M, Friml J, Ding Z. 2014. WOX5-IAA17 feedback circuit-mediated
    cellular auxin response is crucial for the patterning of root stem cell niches
    in arabidopsis. Molecular Plant. 7(2), 277–289.
  mla: Tian, Huiyu, et al. “WOX5-IAA17 Feedback Circuit-Mediated Cellular Auxin Response
    Is Crucial for the Patterning of Root Stem Cell Niches in Arabidopsis.” <i>Molecular
    Plant</i>, vol. 7, no. 2, Oxford University Press, 2014, pp. 277–89, doi:<a href="https://doi.org/10.1093/mp/sst118">10.1093/mp/sst118</a>.
  short: H. Tian, K.T. Wabnik, T. Niu, H. Li, Q. Yu, S. Pollmann, S. Vanneste, W.
    Govaerts, J. Rolčík, M. Geisler, J. Friml, Z. Ding, Molecular Plant 7 (2014) 277–289.
date_created: 2018-12-11T11:54:37Z
date_published: 2014-02-01T00:00:00Z
date_updated: 2025-09-29T12:30:56Z
day: '01'
department:
- _id: JiFr
doi: 10.1093/mp/sst118
external_id:
  isi:
  - '000330841400003'
fulldoi: https://doi.org/10.1093/mp/sst118
intvolume: '         7'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 277 - 289
publication: Molecular Plant
publication_status: published
publisher: Oxford University Press
publist_id: '5194'
scopus_import: '1'
status: public
title: WOX5-IAA17 feedback circuit-mediated cellular auxin response is crucial for
  the patterning of root stem cell niches in arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2014'
...
---
_id: '1914'
abstract:
- lang: eng
  text: Targeting membrane proteins for degradation requires the sequential action
    of ESCRT sub-complexes ESCRT-0 to ESCRT-III. Although this machinery is generally
    conserved among kingdoms, plants lack the essential ESCRT-0 components. A new
    report closes this gap by identifying a novel protein family that substitutes
    for ESCRT-0 function in plants.
article_processing_charge: No
author:
- first_name: Michael
  full_name: Sauer, Michael
  last_name: Sauer
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Sauer M, Friml J. Plant biology: Gatekeepers of the road to protein perdition.
    <i>Current Biology</i>. 2014;24(1):R27-R29. doi:<a href="https://doi.org/10.1016/j.cub.2013.11.019">10.1016/j.cub.2013.11.019</a>'
  apa: 'Sauer, M., &#38; Friml, J. (2014). Plant biology: Gatekeepers of the road
    to protein perdition. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2013.11.019">https://doi.org/10.1016/j.cub.2013.11.019</a>'
  chicago: 'Sauer, Michael, and Jiří Friml. “Plant Biology: Gatekeepers of the Road
    to Protein Perdition.” <i>Current Biology</i>. Cell Press, 2014. <a href="https://doi.org/10.1016/j.cub.2013.11.019">https://doi.org/10.1016/j.cub.2013.11.019</a>.'
  ieee: 'M. Sauer and J. Friml, “Plant biology: Gatekeepers of the road to protein
    perdition,” <i>Current Biology</i>, vol. 24, no. 1. Cell Press, pp. R27–R29, 2014.'
  ista: 'Sauer M, Friml J. 2014. Plant biology: Gatekeepers of the road to protein
    perdition. Current Biology. 24(1), R27–R29.'
  mla: 'Sauer, Michael, and Jiří Friml. “Plant Biology: Gatekeepers of the Road to
    Protein Perdition.” <i>Current Biology</i>, vol. 24, no. 1, Cell Press, 2014,
    pp. R27–29, doi:<a href="https://doi.org/10.1016/j.cub.2013.11.019">10.1016/j.cub.2013.11.019</a>.'
  short: M. Sauer, J. Friml, Current Biology 24 (2014) R27–R29.
corr_author: '1'
date_created: 2018-12-11T11:54:41Z
date_published: 2014-01-06T00:00:00Z
date_updated: 2025-09-29T12:23:35Z
day: '06'
department:
- _id: JiFr
doi: 10.1016/j.cub.2013.11.019
external_id:
  isi:
  - '000329501400011'
fulldoi: https://doi.org/10.1016/j.cub.2013.11.019
intvolume: '        24'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: R27 - R29
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '5180'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Plant biology: Gatekeepers of the road to protein perdition'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 24
year: '2014'
...
---
_id: '1915'
abstract:
- lang: eng
  text: ROPs (Rho of plants) belong to a large family of plant-specific Rho-like small
    GTPases that function as essential molecular switches to control diverse cellular
    processes including cytoskeleton organization, cell polarization, cytokinesis,
    cell differentiation and vesicle trafficking. Although the machineries of vesicle
    trafficking and cell polarity in plants have been individually well addressed,
    how ROPs co-ordinate those processes is still largely unclear. Recent progress
    has been made towards an understanding of the coordination of ROP signalling and
    trafficking of PIN (PINFORMED) transporters for the plant hormone auxin in both
    root and leaf pavement cells. PIN transporters constantly shuttle between the
    endosomal compartments and the polar plasma membrane domains, therefore the modulation
    of PIN-dependent auxin transport between cells is a main developmental output
    of ROP-regulated vesicle trafficking. The present review focuses on these cellular
    mechanisms, especially the integration of ROP-based vesicle trafficking and plant
    cell polarity.
acknowledgement: This work was supported by the European Research Council [project
  ERC-2011-StG-20101109-PSDP], Central European Institute of Technology (CEITEC) [grant
  number CZ.1.05/1.1.00/02.0068], European Social Fund [grant number CZ.1.07/2.3.00/20.0043]
  and the Czec
article_processing_charge: No
article_type: original
author:
- first_name: Xu
  full_name: Chen, Xu
  id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Chen X, Friml J. Rho-GTPase-regulated vesicle trafficking in plant cell polarity.
    <i>Biochemical Society Transactions</i>. 2014;42(1):212-218. doi:<a href="https://doi.org/10.1042/BST20130269">10.1042/BST20130269</a>
  apa: Chen, X., &#38; Friml, J. (2014). Rho-GTPase-regulated vesicle trafficking
    in plant cell polarity. <i>Biochemical Society Transactions</i>. Portland Press.
    <a href="https://doi.org/10.1042/BST20130269">https://doi.org/10.1042/BST20130269</a>
  chicago: Chen, Xu, and Jiří Friml. “Rho-GTPase-Regulated Vesicle Trafficking in
    Plant Cell Polarity.” <i>Biochemical Society Transactions</i>. Portland Press,
    2014. <a href="https://doi.org/10.1042/BST20130269">https://doi.org/10.1042/BST20130269</a>.
  ieee: X. Chen and J. Friml, “Rho-GTPase-regulated vesicle trafficking in plant cell
    polarity,” <i>Biochemical Society Transactions</i>, vol. 42, no. 1. Portland Press,
    pp. 212–218, 2014.
  ista: Chen X, Friml J. 2014. Rho-GTPase-regulated vesicle trafficking in plant cell
    polarity. Biochemical Society Transactions. 42(1), 212–218.
  mla: Chen, Xu, and Jiří Friml. “Rho-GTPase-Regulated Vesicle Trafficking in Plant
    Cell Polarity.” <i>Biochemical Society Transactions</i>, vol. 42, no. 1, Portland
    Press, 2014, pp. 212–18, doi:<a href="https://doi.org/10.1042/BST20130269">10.1042/BST20130269</a>.
  short: X. Chen, J. Friml, Biochemical Society Transactions 42 (2014) 212–218.
corr_author: '1'
date_created: 2018-12-11T11:54:41Z
date_published: 2014-02-01T00:00:00Z
date_updated: 2025-09-29T12:22:54Z
day: '01'
department:
- _id: JiFr
doi: 10.1042/BST20130269
ec_funded: 1
external_id:
  isi:
  - '000333444400034'
  pmid:
  - '24450654'
fulldoi: https://doi.org/10.1042/BST20130269
intvolume: '        42'
isi: 1
issue: '1'
language:
- iso: eng
month: '02'
oa_version: None
page: 212 - 218
pmid: 1
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Biochemical Society Transactions
publication_identifier:
  eissn:
  - 1470-8752
  issn:
  - 0300-5127
publication_status: published
publisher: Portland Press
publist_id: '5179'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rho-GTPase-regulated vesicle trafficking in plant cell polarity
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 42
year: '2014'
...
---
_id: '1917'
abstract:
- lang: eng
  text: Auxin-binding protein 1 (ABP1) was discovered nearly 40 years ago and was
    shown to be essential for plant development and morphogenesis, but its mode of
    action remains unclear. Here, we report that the plasma membrane-localized transmembrane
    kinase (TMK) receptor-like kinases interact with ABP1 and transduce auxin signal
    to activate plasma membrane-associated ROPs [Rho-like guanosine triphosphatases
    (GTPase) from plants], leading to changes in the cytoskeleton and the shape of
    leaf pavement cells in Arabidopsis. The interaction between ABP1 and TMK at the
    cell surface is induced by auxin and requires ABP1 sensing of auxin. These findings
    show that TMK proteins and ABP1 form a cell surface auxin perception complex that
    activates ROP signaling pathways, regulating nontranscriptional cytoplasmic responses
    and associated fundamental processes.
acknowledgement: Supported by the intramural research program of the National Institute
  of Arthritis and Musculoskeletal and Skin Diseases and by its Laboratory Animal
  Care and Use Section and Flow Cytometry Group, Office of Science and Technology
article_processing_charge: No
article_type: original
author:
- first_name: Tongda
  full_name: Xu, Tongda
  last_name: Xu
- first_name: Ning
  full_name: Dai, Ning
  last_name: Dai
- first_name: Jisheng
  full_name: Chen, Jisheng
  last_name: Chen
- first_name: Shingo
  full_name: Nagawa, Shingo
  last_name: Nagawa
- first_name: Min
  full_name: Cao, Min
  last_name: Cao
- first_name: Hongjiang
  full_name: Li, Hongjiang
  id: 33CA54A6-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0001-5039-9660
- first_name: Zimin
  full_name: Zhou, Zimin
  last_name: Zhou
- first_name: Xu
  full_name: Chen, Xu
  id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Riet
  full_name: De Rycke, Riet
  last_name: De Rycke
- first_name: Hana
  full_name: Rakusová, Hana
  last_name: Rakusová
- first_name: Wen
  full_name: Wang, Wen
  last_name: Wang
- first_name: Alan
  full_name: Jones, Alan
  last_name: Jones
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Sara
  full_name: Patterson, Sara
  last_name: Patterson
- first_name: Anthony
  full_name: Bleecker, Anthony
  last_name: Bleecker
- first_name: Zhenbiao
  full_name: Yang, Zhenbiao
  last_name: Yang
citation:
  ama: Xu T, Dai N, Chen J, et al. Cell surface ABP1-TMK auxin sensing complex activates
    ROP GTPase signaling. <i>Science</i>. 2014;343(6174):1025-1028. doi:<a href="https://doi.org/10.1126/science.1245125">10.1126/science.1245125</a>
  apa: Xu, T., Dai, N., Chen, J., Nagawa, S., Cao, M., Li, H., … Yang, Z. (2014).
    Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1245125">https://doi.org/10.1126/science.1245125</a>
  chicago: Xu, Tongda, Ning Dai, Jisheng Chen, Shingo Nagawa, Min Cao, Hongjiang Li,
    Zimin Zhou, et al. “Cell Surface ABP1-TMK Auxin Sensing Complex Activates ROP
    GTPase Signaling.” <i>Science</i>. American Association for the Advancement of
    Science, 2014. <a href="https://doi.org/10.1126/science.1245125">https://doi.org/10.1126/science.1245125</a>.
  ieee: T. Xu <i>et al.</i>, “Cell surface ABP1-TMK auxin sensing complex activates
    ROP GTPase signaling,” <i>Science</i>, vol. 343, no. 6174. American Association
    for the Advancement of Science, pp. 1025–1028, 2014.
  ista: Xu T, Dai N, Chen J, Nagawa S, Cao M, Li H, Zhou Z, Chen X, De Rycke R, Rakusová
    H, Wang W, Jones A, Friml J, Patterson S, Bleecker A, Yang Z. 2014. Cell surface
    ABP1-TMK auxin sensing complex activates ROP GTPase signaling. Science. 343(6174),
    1025–1028.
  mla: Xu, Tongda, et al. “Cell Surface ABP1-TMK Auxin Sensing Complex Activates ROP
    GTPase Signaling.” <i>Science</i>, vol. 343, no. 6174, American Association for
    the Advancement of Science, 2014, pp. 1025–28, doi:<a href="https://doi.org/10.1126/science.1245125">10.1126/science.1245125</a>.
  short: T. Xu, N. Dai, J. Chen, S. Nagawa, M. Cao, H. Li, Z. Zhou, X. Chen, R. De
    Rycke, H. Rakusová, W. Wang, A. Jones, J. Friml, S. Patterson, A. Bleecker, Z.
    Yang, Science 343 (2014) 1025–1028.
date_created: 2018-12-11T11:54:42Z
date_published: 2014-02-28T00:00:00Z
date_updated: 2025-09-29T12:20:10Z
day: '28'
department:
- _id: JiFr
doi: 10.1126/science.1245125
external_id:
  isi:
  - '000332309600046'
  pmid:
  - '24578577'
fulldoi: https://doi.org/10.1126/science.1245125
intvolume: '       343'
isi: 1
issue: '6174'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166562/
month: '02'
oa: 1
oa_version: Submitted Version
page: 1025 - 1028
pmid: 1
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '5177'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 343
year: '2014'
...
---
_id: '1921'
abstract:
- lang: eng
  text: Cell polarity manifested by asymmetric distribution of cargoes, such as receptors
    and transporters, within the plasma membrane (PM) is crucial for essential functions
    in multicellular organisms. In plants, cell polarity (re)establishment is intimately
    linked to patterning processes. Despite the importance of cell polarity, its underlying
    mechanisms are still largely unknown, including the definition and distinctiveness
    of the polar domains within the PM. Here, we show in Arabidopsis thaliana that
    the signaling membrane components, the phosphoinositides phosphatidylinositol
    4-phosphate (PtdIns4P) and phosphatidylinositol 4, 5-bisphosphate [PtdIns(4, 5)P2]
    as well as PtdIns4P 5-kinases mediating their interconversion, are specifically
    enriched at apical and basal polar plasma membrane domains. The PtdIns4P 5-kinases
    PIP5K1 and PIP5K2 are redundantly required for polar localization of specifically
    apical and basal cargoes, such as PIN-FORMED transporters for the plant hormone
    auxin. As a consequence of the polarity defects, instructive auxin gradients as
    well as embryonic and postembryonic patterning are severely compromised. Furthermore,
    auxin itself regulates PIP5K transcription and PtdIns4P and PtdIns(4, 5)P2 levels,
    in particular their association with polar PM domains. Our results provide insight
    into the polar domain-delineating mechanisms in plant cells that depend on apical
    and basal distribution of membrane lipids and are essential for embryonic and
    postembryonic patterning.
acknowledgement: This work was supported by grants from the Odysseus program of the
  Research Foundation-Flanders (to J.F.).
article_processing_charge: No
author:
- first_name: Ricardo
  full_name: Tejos, Ricardo
  last_name: Tejos
- first_name: Michael
  full_name: Sauer, Michael
  last_name: Sauer
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: 'MiriamPalacios '
  full_name: 'Palacios-Gomez, MiriamPalacios '
  last_name: Palacios-Gomez
- first_name: Hongjiang
  full_name: Li, Hongjiang
  id: 33CA54A6-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0001-5039-9660
- first_name: Mareike
  full_name: Heilmann, Mareike
  last_name: Heilmann
- first_name: Ringo
  full_name: Van Wijk, Ringo
  last_name: Van Wijk
- first_name: Joop
  full_name: Vermeer, Joop
  last_name: Vermeer
- first_name: Ingo
  full_name: Heilmann, Ingo
  last_name: Heilmann
- first_name: Teun
  full_name: Munnik, Teun
  last_name: Munnik
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Tejos R, Sauer M, Vanneste S, et al. Bipolar plasma membrane distribution of
    phosphoinositides and their requirement for auxin-mediated cell polarity and patterning
    in Arabidopsis. <i>Plant Cell</i>. 2014;26(5):2114-2128. doi:<a href="https://doi.org/10.1105/tpc.114.126185">10.1105/tpc.114.126185</a>
  apa: Tejos, R., Sauer, M., Vanneste, S., Palacios-Gomez, M., Li, H., Heilmann, M.,
    … Friml, J. (2014). Bipolar plasma membrane distribution of phosphoinositides
    and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis.
    <i>Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.114.126185">https://doi.org/10.1105/tpc.114.126185</a>
  chicago: Tejos, Ricardo, Michael Sauer, Steffen Vanneste, MiriamPalacios  Palacios-Gomez,
    Hongjiang Li, Mareike Heilmann, Ringo Van Wijk, et al. “Bipolar Plasma Membrane
    Distribution of Phosphoinositides and Their Requirement for Auxin-Mediated Cell
    Polarity and Patterning in Arabidopsis.” <i>Plant Cell</i>. American Society of
    Plant Biologists, 2014. <a href="https://doi.org/10.1105/tpc.114.126185">https://doi.org/10.1105/tpc.114.126185</a>.
  ieee: R. Tejos <i>et al.</i>, “Bipolar plasma membrane distribution of phosphoinositides
    and their requirement for auxin-mediated cell polarity and patterning in Arabidopsis,”
    <i>Plant Cell</i>, vol. 26, no. 5. American Society of Plant Biologists, pp. 2114–2128,
    2014.
  ista: Tejos R, Sauer M, Vanneste S, Palacios-Gomez M, Li H, Heilmann M, Van Wijk
    R, Vermeer J, Heilmann I, Munnik T, Friml J. 2014. Bipolar plasma membrane distribution
    of phosphoinositides and their requirement for auxin-mediated cell polarity and
    patterning in Arabidopsis. Plant Cell. 26(5), 2114–2128.
  mla: Tejos, Ricardo, et al. “Bipolar Plasma Membrane Distribution of Phosphoinositides
    and Their Requirement for Auxin-Mediated Cell Polarity and Patterning in Arabidopsis.”
    <i>Plant Cell</i>, vol. 26, no. 5, American Society of Plant Biologists, 2014,
    pp. 2114–28, doi:<a href="https://doi.org/10.1105/tpc.114.126185">10.1105/tpc.114.126185</a>.
  short: R. Tejos, M. Sauer, S. Vanneste, M. Palacios-Gomez, H. Li, M. Heilmann, R.
    Van Wijk, J. Vermeer, I. Heilmann, T. Munnik, J. Friml, Plant Cell 26 (2014) 2114–2128.
corr_author: '1'
date_created: 2018-12-11T11:54:43Z
date_published: 2014-05-01T00:00:00Z
date_updated: 2025-09-29T12:17:33Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.114.126185
ec_funded: 1
external_id:
  isi:
  - '000338771700027'
fulldoi: https://doi.org/10.1105/tpc.114.126185
intvolume: '        26'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079372/
month: '05'
oa: 1
oa_version: Submitted Version
page: 2114 - 2128
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '5173'
scopus_import: '1'
status: public
title: Bipolar plasma membrane distribution of phosphoinositides and their requirement
  for auxin-mediated cell polarity and patterning in Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 26
year: '2014'
...
---
_id: '1924'
abstract:
- lang: eng
  text: Stomata are two-celled valves that control epidermal pores whose spacing optimizes
    shoot-atmosphere gas exchange. They develop from protodermal cells after unequal
    divisions followed by an equal division and differentiation. The concentration
    of the hormone auxin, a master plant developmental regulator, is tightly controlled
    in time and space, but its role, if any, in stomatal formation is obscure. Here
    dynamic changes of auxin activity during stomatal development are monitored using
    auxin input (DII-VENUS) and output (DR5:VENUS) markers by time-lapse imaging.
    A decrease in auxin levels in the smaller daughter cell after unequal division
    presages the acquisition of a guard mother cell fate whose equal division produces
    the two guard cells. Thus, stomatal patterning requires auxin pathway control
    of stem cell compartment size, as well as auxin depletion that triggers a developmental
    switch from unequal to equal division.
article_number: '3090'
article_processing_charge: No
author:
- first_name: Jie
  full_name: Le, Jie
  last_name: Le
- first_name: Xuguang
  full_name: Liu, Xuguang
  last_name: Liu
- first_name: Kezhen
  full_name: Yang, Kezhen
  last_name: Yang
- first_name: Xiaolan
  full_name: Chen, Xiaolan
  last_name: Chen
- first_name: Lingling
  full_name: Zhu, Lingling
  last_name: Zhu
- first_name: Hongzhe
  full_name: Wang, Hongzhe
  last_name: Wang
- first_name: Ming
  full_name: Wang, Ming
  last_name: Wang
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Miyo
  full_name: Morita, Miyo
  last_name: Morita
- first_name: Masao
  full_name: Tasaka, Masao
  last_name: Tasaka
- first_name: Zhaojun
  full_name: Ding, Zhaojun
  last_name: Ding
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Tom
  full_name: Beeckman, Tom
  last_name: Beeckman
- first_name: Fred
  full_name: Sack, Fred
  last_name: Sack
citation:
  ama: Le J, Liu X, Yang K, et al. Auxin transport and activity regulate stomatal
    patterning and development. <i>Nature Communications</i>. 2014;5. doi:<a href="https://doi.org/10.1038/ncomms4090">10.1038/ncomms4090</a>
  apa: Le, J., Liu, X., Yang, K., Chen, X., Zhu, L., Wang, H., … Sack, F. (2014).
    Auxin transport and activity regulate stomatal patterning and development. <i>Nature
    Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/ncomms4090">https://doi.org/10.1038/ncomms4090</a>
  chicago: Le, Jie, Xuguang Liu, Kezhen Yang, Xiaolan Chen, Lingling Zhu, Hongzhe
    Wang, Ming Wang, et al. “Auxin Transport and Activity Regulate Stomatal Patterning
    and Development.” <i>Nature Communications</i>. Nature Publishing Group, 2014.
    <a href="https://doi.org/10.1038/ncomms4090">https://doi.org/10.1038/ncomms4090</a>.
  ieee: J. Le <i>et al.</i>, “Auxin transport and activity regulate stomatal patterning
    and development,” <i>Nature Communications</i>, vol. 5. Nature Publishing Group,
    2014.
  ista: Le J, Liu X, Yang K, Chen X, Zhu L, Wang H, Wang M, Vanneste S, Morita M,
    Tasaka M, Ding Z, Friml J, Beeckman T, Sack F. 2014. Auxin transport and activity
    regulate stomatal patterning and development. Nature Communications. 5, 3090.
  mla: Le, Jie, et al. “Auxin Transport and Activity Regulate Stomatal Patterning
    and Development.” <i>Nature Communications</i>, vol. 5, 3090, Nature Publishing
    Group, 2014, doi:<a href="https://doi.org/10.1038/ncomms4090">10.1038/ncomms4090</a>.
  short: J. Le, X. Liu, K. Yang, X. Chen, L. Zhu, H. Wang, M. Wang, S. Vanneste, M.
    Morita, M. Tasaka, Z. Ding, J. Friml, T. Beeckman, F. Sack, Nature Communications
    5 (2014).
date_created: 2018-12-11T11:54:44Z
date_published: 2014-01-27T00:00:00Z
date_updated: 2025-09-29T12:15:23Z
day: '27'
department:
- _id: JiFr
doi: 10.1038/ncomms4090
external_id:
  isi:
  - '000331084200032'
fulldoi: https://doi.org/10.1038/ncomms4090
intvolume: '         5'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5170'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin transport and activity regulate stomatal patterning and development
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 5
year: '2014'
...
---
_id: '1934'
abstract:
- lang: eng
  text: The plant hormones auxin and cytokinin mutually coordinate their activities
    to control various aspects of development [1-9], and their crosstalk occurs at
    multiple levels [10, 11]. Cytokinin-mediated modulation of auxin transport provides
    an efficient means to regulate auxin distribution in plant organs. Here, we demonstrate
    that cytokinin does not merely control the overall auxin flow capacity, but might
    also act as a polarizing cue and control the auxin stream directionality during
    plant organogenesis. Cytokinin enhances the PIN-FORMED1 (PIN1) auxin transporter
    depletion at specific polar domains, thus rearranging the cellular PIN polarities
    and directly regulating the auxin flow direction. This selective cytokinin sensitivity
    correlates with the PIN protein phosphorylation degree. PIN1 phosphomimicking
    mutations, as well as enhanced phosphorylation in plants with modulated activities
    of PIN-specific kinases and phosphatases, desensitize PIN1 to cytokinin. Our results
    reveal conceptually novel, cytokinin-driven polarization mechanism that operates
    in developmental processes involving rapid auxin stream redirection, such as lateral
    root organogenesis, in which a gradual PIN polarity switch defines the growth
    axis of the newly formed organ.
article_processing_charge: No
author:
- first_name: Peter
  full_name: Marhavy, Peter
  id: 3F45B078-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavy
  orcid: 0000-0001-5227-5741
- first_name: Jérôme
  full_name: Duclercq, Jérôme
  last_name: Duclercq
- first_name: Benjamin
  full_name: Weller, Benjamin
  last_name: Weller
- first_name: Elena
  full_name: Feraru, Elena
  last_name: Feraru
- first_name: Agnieszka
  full_name: Bielach, Agnieszka
  last_name: Bielach
- first_name: Remko
  full_name: Offringa, Remko
  last_name: Offringa
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Claus
  full_name: Schwechheimer, Claus
  last_name: Schwechheimer
- first_name: Angus
  full_name: Murphy, Angus
  last_name: Murphy
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
citation:
  ama: Marhavý P, Duclercq J, Weller B, et al. Cytokinin controls polarity of PIN1-dependent
    Auxin transport during lateral root organogenesis. <i>Current Biology</i>. 2014;24(9):1031-1037.
    doi:<a href="https://doi.org/10.1016/j.cub.2014.04.002">10.1016/j.cub.2014.04.002</a>
  apa: Marhavý, P., Duclercq, J., Weller, B., Feraru, E., Bielach, A., Offringa, R.,
    … Benková, E. (2014). Cytokinin controls polarity of PIN1-dependent Auxin transport
    during lateral root organogenesis. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2014.04.002">https://doi.org/10.1016/j.cub.2014.04.002</a>
  chicago: Marhavý, Peter, Jérôme Duclercq, Benjamin Weller, Elena Feraru, Agnieszka
    Bielach, Remko Offringa, Jiří Friml, Claus Schwechheimer, Angus Murphy, and Eva
    Benková. “Cytokinin Controls Polarity of PIN1-Dependent Auxin Transport during
    Lateral Root Organogenesis.” <i>Current Biology</i>. Cell Press, 2014. <a href="https://doi.org/10.1016/j.cub.2014.04.002">https://doi.org/10.1016/j.cub.2014.04.002</a>.
  ieee: P. Marhavý <i>et al.</i>, “Cytokinin controls polarity of PIN1-dependent Auxin
    transport during lateral root organogenesis,” <i>Current Biology</i>, vol. 24,
    no. 9. Cell Press, pp. 1031–1037, 2014.
  ista: Marhavý P, Duclercq J, Weller B, Feraru E, Bielach A, Offringa R, Friml J,
    Schwechheimer C, Murphy A, Benková E. 2014. Cytokinin controls polarity of PIN1-dependent
    Auxin transport during lateral root organogenesis. Current Biology. 24(9), 1031–1037.
  mla: Marhavý, Peter, et al. “Cytokinin Controls Polarity of PIN1-Dependent Auxin
    Transport during Lateral Root Organogenesis.” <i>Current Biology</i>, vol. 24,
    no. 9, Cell Press, 2014, pp. 1031–37, doi:<a href="https://doi.org/10.1016/j.cub.2014.04.002">10.1016/j.cub.2014.04.002</a>.
  short: P. Marhavý, J. Duclercq, B. Weller, E. Feraru, A. Bielach, R. Offringa, J.
    Friml, C. Schwechheimer, A. Murphy, E. Benková, Current Biology 24 (2014) 1031–1037.
corr_author: '1'
date_created: 2018-12-11T11:54:48Z
date_published: 2014-05-05T00:00:00Z
date_updated: 2025-09-29T12:09:47Z
day: '05'
department:
- _id: EvBe
- _id: JiFr
doi: 10.1016/j.cub.2014.04.002
ec_funded: 1
external_id:
  isi:
  - '000335542300029'
fulldoi: https://doi.org/10.1016/j.cub.2014.04.002
intvolume: '        24'
isi: 1
issue: '9'
language:
- iso: eng
month: '05'
oa_version: None
page: 1031 - 1037
project:
- _id: 253FCA6A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '207362'
  name: Hormonal cross-talk in plant organogenesis
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '5160'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cytokinin controls polarity of PIN1-dependent Auxin transport during lateral
  root organogenesis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 24
year: '2014'
...
---
_id: '1994'
abstract:
- lang: eng
  text: The emergence and radiation of multicellular land plants was driven by crucial
    innovations to their body plans [1]. The directional transport of the phytohormone
    auxin represents a key, plant-specific mechanism for polarization and patterning
    in complex seed plants [2-5]. Here, we show that already in the early diverging
    land plant lineage, as exemplified by the moss Physcomitrella patens, auxin transport
    by PIN transporters is operational and diversified into ER-localized and plasma
    membrane-localized PIN proteins. Gain-of-function and loss-of-function analyses
    revealed that PIN-dependent intercellular auxin transport in Physcomitrella mediates
    crucial developmental transitions in tip-growing filaments and waves of polarization
    and differentiation in leaf-like structures. Plasma membrane PIN proteins localize
    in a polar manner to the tips of moss filaments, revealing an unexpected relation
    between polarization mechanisms in moss tip-growing cells and multicellular tissues
    of seed plants. Our results trace the origins of polarization and auxin-mediated
    patterning mechanisms and highlight the crucial role of polarized auxin transport
    during the evolution of multicellular land plants.
article_processing_charge: No
author:
- first_name: Tom
  full_name: Viaene, Tom
  last_name: Viaene
- first_name: Katarina
  full_name: Landberg, Katarina
  last_name: Landberg
- first_name: Mattias
  full_name: Thelander, Mattias
  last_name: Thelander
- first_name: Eva
  full_name: Medvecka, Eva
  last_name: Medvecka
- first_name: Eric
  full_name: Pederson, Eric
  last_name: Pederson
- first_name: Elena
  full_name: Feraru, Elena
  last_name: Feraru
- first_name: Endymion
  full_name: Cooper, Endymion
  last_name: Cooper
- first_name: Mansour
  full_name: Karimi, Mansour
  last_name: Karimi
- first_name: Charles
  full_name: Delwiche, Charles
  last_name: Delwiche
- first_name: Karin
  full_name: Ljung, Karin
  last_name: Ljung
- first_name: Markus
  full_name: Geisler, Markus
  last_name: Geisler
- first_name: Eva
  full_name: Sundberg, Eva
  last_name: Sundberg
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Viaene T, Landberg K, Thelander M, et al. Directional auxin transport mechanisms
    in early diverging land plants. <i>Current Biology</i>. 2014;24(23):2786-2791.
    doi:<a href="https://doi.org/10.1016/j.cub.2014.09.056">10.1016/j.cub.2014.09.056</a>
  apa: Viaene, T., Landberg, K., Thelander, M., Medvecka, E., Pederson, E., Feraru,
    E., … Friml, J. (2014). Directional auxin transport mechanisms in early diverging
    land plants. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2014.09.056">https://doi.org/10.1016/j.cub.2014.09.056</a>
  chicago: Viaene, Tom, Katarina Landberg, Mattias Thelander, Eva Medvecka, Eric Pederson,
    Elena Feraru, Endymion Cooper, et al. “Directional Auxin Transport Mechanisms
    in Early Diverging Land Plants.” <i>Current Biology</i>. Cell Press, 2014. <a
    href="https://doi.org/10.1016/j.cub.2014.09.056">https://doi.org/10.1016/j.cub.2014.09.056</a>.
  ieee: T. Viaene <i>et al.</i>, “Directional auxin transport mechanisms in early
    diverging land plants,” <i>Current Biology</i>, vol. 24, no. 23. Cell Press, pp.
    2786–2791, 2014.
  ista: Viaene T, Landberg K, Thelander M, Medvecka E, Pederson E, Feraru E, Cooper
    E, Karimi M, Delwiche C, Ljung K, Geisler M, Sundberg E, Friml J. 2014. Directional
    auxin transport mechanisms in early diverging land plants. Current Biology. 24(23),
    2786–2791.
  mla: Viaene, Tom, et al. “Directional Auxin Transport Mechanisms in Early Diverging
    Land Plants.” <i>Current Biology</i>, vol. 24, no. 23, Cell Press, 2014, pp. 2786–91,
    doi:<a href="https://doi.org/10.1016/j.cub.2014.09.056">10.1016/j.cub.2014.09.056</a>.
  short: T. Viaene, K. Landberg, M. Thelander, E. Medvecka, E. Pederson, E. Feraru,
    E. Cooper, M. Karimi, C. Delwiche, K. Ljung, M. Geisler, E. Sundberg, J. Friml,
    Current Biology 24 (2014) 2786–2791.
corr_author: '1'
date_created: 2018-12-11T11:55:06Z
date_published: 2014-12-01T00:00:00Z
date_updated: 2025-09-29T12:07:20Z
day: '01'
department:
- _id: JiFr
doi: 10.1016/j.cub.2014.09.056
ec_funded: 1
external_id:
  isi:
  - '000345808700019'
fulldoi: https://doi.org/10.1016/j.cub.2014.09.056
intvolume: '        24'
isi: 1
issue: '23'
language:
- iso: eng
month: '12'
oa_version: None
page: 2786 - 2791
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '5088'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directional auxin transport mechanisms in early diverging land plants
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 24
year: '2014'
...
---
_id: '1996'
abstract:
- lang: eng
  text: Auxin polar transport, local maxima, and gradients have become an importantmodel
    system for studying self-organization. Auxin distribution is regulated by auxin-dependent
    positive feedback loops that are not well-understood at the molecular level. Previously,
    we showed the involvement of the RHO of Plants (ROP) effector INTERACTOR of CONSTITUTIVELY
    active ROP 1 (ICR1) in regulation of auxin transport and that ICR1 levels are
    posttranscriptionally repressed at the site of maximum auxin accumulation at the
    root tip. Here, we show that bimodal regulation of ICR1 levels by auxin is essential
    for regulating formation of auxin local maxima and gradients. ICR1 levels increase
    concomitant with increase in auxin response in lateral root primordia, cotyledon
    tips, and provascular tissues. However, in the embryo hypophysis and root meristem,
    when auxin exceeds critical levels, ICR1 is rapidly destabilized by an SCF(TIR1/AFB)
    [SKP, Cullin, F-box (transport inhibitor response 1/auxin signaling F-box protein)]-dependent
    auxin signaling mechanism. Furthermore, ectopic expression of ICR1 in the embryo
    hypophysis resulted in reduction of auxin accumulation and concomitant root growth
    arrest. ICR1 disappeared during root regeneration and lateral root initiation
    concomitantly with the formation of a local auxin maximum in response to external
    auxin treatments and transiently after gravitropic stimulation. Destabilization
    of ICR1 was impaired after inhibition of auxin transport and signaling, proteasome
    function, and protein synthesis. A mathematical model based on these findings
    shows that an in vivo-like auxin distribution, rootward auxin flux, and shootward
    reflux can be simulated without assuming preexisting tissue polarity. Our experimental
    results and mathematical modeling indicate that regulation of auxin distribution
    is tightly associated with auxin-dependent ICR1 levels.
article_processing_charge: No
author:
- first_name: Ora
  full_name: Hazak, Ora
  last_name: Hazak
- first_name: Uri
  full_name: Obolski, Uri
  last_name: Obolski
- first_name: Tomas
  full_name: Prat, Tomas
  id: 3DA3BFEE-F248-11E8-B48F-1D18A9856A87
  last_name: Prat
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Lilach
  full_name: Hadany, Lilach
  last_name: Hadany
- first_name: Shaul
  full_name: Yalovsky, Shaul
  last_name: Yalovsky
citation:
  ama: Hazak O, Obolski U, Prat T, Friml J, Hadany L, Yalovsky S. Bimodal regulation
    of ICR1 levels generates self-organizing auxin distribution. <i>PNAS</i>. 2014;111(50):E5471-E5479.
    doi:<a href="https://doi.org/10.1073/pnas.1413918111">10.1073/pnas.1413918111</a>
  apa: Hazak, O., Obolski, U., Prat, T., Friml, J., Hadany, L., &#38; Yalovsky, S.
    (2014). Bimodal regulation of ICR1 levels generates self-organizing auxin distribution.
    <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1413918111">https://doi.org/10.1073/pnas.1413918111</a>
  chicago: Hazak, Ora, Uri Obolski, Tomas Prat, Jiří Friml, Lilach Hadany, and Shaul
    Yalovsky. “Bimodal Regulation of ICR1 Levels Generates Self-Organizing Auxin Distribution.”
    <i>PNAS</i>. National Academy of Sciences, 2014. <a href="https://doi.org/10.1073/pnas.1413918111">https://doi.org/10.1073/pnas.1413918111</a>.
  ieee: O. Hazak, U. Obolski, T. Prat, J. Friml, L. Hadany, and S. Yalovsky, “Bimodal
    regulation of ICR1 levels generates self-organizing auxin distribution,” <i>PNAS</i>,
    vol. 111, no. 50. National Academy of Sciences, pp. E5471–E5479, 2014.
  ista: Hazak O, Obolski U, Prat T, Friml J, Hadany L, Yalovsky S. 2014. Bimodal regulation
    of ICR1 levels generates self-organizing auxin distribution. PNAS. 111(50), E5471–E5479.
  mla: Hazak, Ora, et al. “Bimodal Regulation of ICR1 Levels Generates Self-Organizing
    Auxin Distribution.” <i>PNAS</i>, vol. 111, no. 50, National Academy of Sciences,
    2014, pp. E5471–79, doi:<a href="https://doi.org/10.1073/pnas.1413918111">10.1073/pnas.1413918111</a>.
  short: O. Hazak, U. Obolski, T. Prat, J. Friml, L. Hadany, S. Yalovsky, PNAS 111
    (2014) E5471–E5479.
date_created: 2018-12-11T11:55:07Z
date_published: 2014-12-16T00:00:00Z
date_updated: 2025-09-29T12:06:13Z
day: '16'
department:
- _id: JiFr
doi: 10.1073/pnas.1413918111
external_id:
  isi:
  - '000346366500020'
fulldoi: https://doi.org/10.1073/pnas.1413918111
intvolume: '       111'
isi: 1
issue: '50'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4273421/
month: '12'
oa: 1
oa_version: Submitted Version
page: E5471 - E5479
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5083'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bimodal regulation of ICR1 levels generates self-organizing auxin distribution
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 111
year: '2014'
...
---
_id: '2061'
abstract:
- lang: eng
  text: 'Development of cambium and its activity is important for our knowledge of
    the mechanism of secondary growth. Arabidopsis thaliana emerges as a good model
    plant for such a kind of study. Thus, this paper reports on cellular events taking
    place in the interfascicular regions of inflorescence stems of A. thaliana, leading
    to the development of interfascicular cambium from differentiated interfascicular
    parenchyma cells (IPC). These events are as follows: appearance of auxin accumulation,
    PIN1 gene expression, polar PIN1 protein localization in the basal plasma membrane
    and periclinal divisions. Distribution of auxin was observed to be higher in differentiating
    into cambium parenchyma cells compared to cells within the pith and cortex. Expression
    of PIN1 in IPC was always preceded by auxin accumulation. Basal localization of
    PIN1 was already established in the cells prior to their periclinal division.
    These cellular events initiated within parenchyma cells adjacent to the vascular
    bundles and successively extended from that point towards the middle region of
    the interfascicular area, located between neighboring vascular bundles. The final
    consequence of which was the closure of the cambial ring within the stem. Changes
    in the chemical composition of IPC walls were also detected and included changes
    of pectic epitopes, xyloglucans (XG) and extensins rich in hydroxyproline (HRGPs).
    In summary, results presented in this paper describe interfascicular cambium ontogenesis
    in terms of successive cellular events in the interfascicular regions of inflorescence
    stems of Arabidopsis.'
article_processing_charge: No
author:
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Ewa
  full_name: Kurczyñska, Ewa
  last_name: Kurczyñska
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Mazur E, Kurczyñska E, Friml J. Cellular events during interfascicular cambium
    ontogenesis in inflorescence stems of Arabidopsis. <i>Protoplasma</i>. 2014;251(5):1125-1139.
    doi:<a href="https://doi.org/10.1007/s00709-014-0620-5">10.1007/s00709-014-0620-5</a>
  apa: Mazur, E., Kurczyñska, E., &#38; Friml, J. (2014). Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis. <i>Protoplasma</i>.
    Springer. <a href="https://doi.org/10.1007/s00709-014-0620-5">https://doi.org/10.1007/s00709-014-0620-5</a>
  chicago: Mazur, Ewa, Ewa Kurczyñska, and Jiří Friml. “Cellular Events during Interfascicular
    Cambium Ontogenesis in Inflorescence Stems of Arabidopsis.” <i>Protoplasma</i>.
    Springer, 2014. <a href="https://doi.org/10.1007/s00709-014-0620-5">https://doi.org/10.1007/s00709-014-0620-5</a>.
  ieee: E. Mazur, E. Kurczyñska, and J. Friml, “Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis,” <i>Protoplasma</i>,
    vol. 251, no. 5. Springer, pp. 1125–1139, 2014.
  ista: Mazur E, Kurczyñska E, Friml J. 2014. Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. 251(5),
    1125–1139.
  mla: Mazur, Ewa, et al. “Cellular Events during Interfascicular Cambium Ontogenesis
    in Inflorescence Stems of Arabidopsis.” <i>Protoplasma</i>, vol. 251, no. 5, Springer,
    2014, pp. 1125–39, doi:<a href="https://doi.org/10.1007/s00709-014-0620-5">10.1007/s00709-014-0620-5</a>.
  short: E. Mazur, E. Kurczyñska, J. Friml, Protoplasma 251 (2014) 1125–1139.
date_created: 2018-12-11T11:55:29Z
date_published: 2014-02-14T00:00:00Z
date_updated: 2025-09-29T11:48:32Z
day: '14'
department:
- _id: JiFr
doi: 10.1007/s00709-014-0620-5
external_id:
  isi:
  - '000340480300012'
fulldoi: https://doi.org/10.1007/s00709-014-0620-5
intvolume: '       251'
isi: 1
issue: '5'
language:
- iso: eng
month: '02'
oa_version: None
page: 1125 - 1139
publication: Protoplasma
publication_status: published
publisher: Springer
publist_id: '4985'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cellular events during interfascicular cambium ontogenesis in inflorescence
  stems of Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 251
year: '2014'
...
---
_id: '1806'
abstract:
- lang: eng
  text: The generation of asymmetry, at both cellular and tissue level, is one of
    the most essential capabilities of all eukaryotic organisms. It mediates basically
    all multicellular development ranging from embryogenesis and de novo organ formation
    till responses to various environmental stimuli. In plants, the awe-inspiring
    number of such processes is regulated by phytohormone auxin and its directional,
    cell-to-cell transport. The mediators of this transport, PIN auxin transporters,
    are asymmetrically localized at the plasma membrane, and this polar localization
    determines the directionality of intercellular auxin flow. Thus, auxin transport
    contributes crucially to the generation of local auxin gradients or maxima, which
    instruct given cell to change its developmental program. Here, we introduce and
    discuss the molecular components and cellular mechanisms regulating the generation
    and maintenance of cellular PIN polarity, as the general hallmarks of cell polarity
    in plants.
author:
- first_name: Pawel
  full_name: Baster, Pawel
  id: 3028BD74-F248-11E8-B48F-1D18A9856A87
  last_name: Baster
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Baster P, Friml J. Auxin on the road navigated by cellular PIN polarity. In:
    Zažímalová E, Petrášek J, Benková E, eds. <i>Auxin and Its Role in Plant Development</i>.
    Springer; 2014:143-170. doi:<a href="https://doi.org/10.1007/978-3-7091-1526-8_8">10.1007/978-3-7091-1526-8_8</a>'
  apa: Baster, P., &#38; Friml, J. (2014). Auxin on the road navigated by cellular
    PIN polarity. In E. Zažímalová, J. Petrášek, &#38; E. Benková (Eds.), <i>Auxin
    and Its Role in Plant Development</i> (pp. 143–170). Springer. <a href="https://doi.org/10.1007/978-3-7091-1526-8_8">https://doi.org/10.1007/978-3-7091-1526-8_8</a>
  chicago: Baster, Pawel, and Jiří Friml. “Auxin on the Road Navigated by Cellular
    PIN Polarity.” In <i>Auxin and Its Role in Plant Development</i>, edited by Eva
    Zažímalová, Jan Petrášek, and Eva Benková, 143–70. Springer, 2014. <a href="https://doi.org/10.1007/978-3-7091-1526-8_8">https://doi.org/10.1007/978-3-7091-1526-8_8</a>.
  ieee: P. Baster and J. Friml, “Auxin on the road navigated by cellular PIN polarity,”
    in <i>Auxin and Its Role in Plant Development</i>, E. Zažímalová, J. Petrášek,
    and E. Benková, Eds. Springer, 2014, pp. 143–170.
  ista: 'Baster P, Friml J. 2014.Auxin on the road navigated by cellular PIN polarity.
    In: Auxin and Its Role in Plant Development. , 143–170.'
  mla: Baster, Pawel, and Jiří Friml. “Auxin on the Road Navigated by Cellular PIN
    Polarity.” <i>Auxin and Its Role in Plant Development</i>, edited by Eva Zažímalová
    et al., Springer, 2014, pp. 143–70, doi:<a href="https://doi.org/10.1007/978-3-7091-1526-8_8">10.1007/978-3-7091-1526-8_8</a>.
  short: P. Baster, J. Friml, in:, E. Zažímalová, J. Petrášek, E. Benková (Eds.),
    Auxin and Its Role in Plant Development, Springer, 2014, pp. 143–170.
corr_author: '1'
date_created: 2018-12-11T11:54:07Z
date_published: 2014-04-01T00:00:00Z
date_updated: 2024-10-09T20:55:54Z
day: '01'
department:
- _id: JiFr
doi: 10.1007/978-3-7091-1526-8_8
editor:
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
fulldoi: https://doi.org/10.1007/978-3-7091-1526-8_8
language:
- iso: eng
month: '04'
oa_version: None
page: 143 - 170
publication: Auxin and Its Role in Plant Development
publication_status: published
publisher: Springer
publist_id: '5304'
quality_controlled: '1'
scopus_import: 1
status: public
title: Auxin on the road navigated by cellular PIN polarity
type: book_chapter
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
OA_place: publisher
_id: '1402'
abstract:
- lang: eng
  text: Phosphatidylinositol (Ptdlns) is a structural phospholipid that can be phosphorylated
    into various lipid signaling molecules, designated polyphosphoinositides (PPIs).
    The reversible phosphorylation of PPIs on the 3, 4, or 5 position of inositol
    is performed by a set of organelle-specific kinases and phosphatases, and the
    characteristic head groups make these molecules ideal for regulating biological
    processes in time and space. In yeast and mammals, Ptdlns3P and Ptdlns(3,5)P2
    play crucial roles in trafficking toward the lytic compartments, whereas the role
    in plants is not yet fully understood. Here we identified the role of a land plant-specific
    subgroup of PPI phosphatases, the suppressor of actin 2 (SAC2) to SAC5, during
    vauolar trafficking and morphogenesis in Arabidopsis thaliana. SAC2-SAC5 localize
    to the tonoplast along with Ptdlns3P, the presumable product of their activity.
    in SAC gain- and loss-of-function mutants, the levels of Ptdlns monophosphates
    and bisphosphates were changed, with opposite effects on the morphology of storage
    and lytic vacuoles, and the trafficking toward the vacuoles was defective. Moreover,
    multiple sac knockout mutants had an increased number of smaller storage and lytic
    vacuoles, whereas extralarge vacuoles were observed in the overexpression lines,
    correlating with various growth and developmental defects. The fragmented vacuolar
    phenotype of sac mutants could be mimicked by treating wild-type seedlings with
    Ptdlns(3,5)P2, corroborating that this PPI is important for vacuole morphology.
    Taken together, these results provide evidence that PPIs, together with their
    metabolic enzymes SAC2-SAC5, are crucial for vacuolar trafficking and for vacuolar
    morphology and function in plants.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Petra
  full_name: Marhavá, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavá
citation:
  ama: Marhavá P. Molecular mechanisms of patterning and subcellular trafficking in
    Arabidopsis thaliana. 2014.
  apa: Marhavá, P. (2014). <i>Molecular mechanisms of patterning and subcellular trafficking
    in Arabidopsis thaliana</i>. Institute of Science and Technology Austria.
  chicago: Marhavá, Petra. “Molecular Mechanisms of Patterning and Subcellular Trafficking
    in Arabidopsis Thaliana.” Institute of Science and Technology Austria, 2014.
  ieee: P. Marhavá, “Molecular mechanisms of patterning and subcellular trafficking
    in Arabidopsis thaliana,” Institute of Science and Technology Austria, 2014.
  ista: Marhavá P. 2014. Molecular mechanisms of patterning and subcellular trafficking
    in Arabidopsis thaliana. Institute of Science and Technology Austria.
  mla: Marhavá, Petra. <i>Molecular Mechanisms of Patterning and Subcellular Trafficking
    in Arabidopsis Thaliana</i>. Institute of Science and Technology Austria, 2014.
  short: P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking
    in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2014.
corr_author: '1'
date_created: 2018-12-11T11:51:49Z
date_published: 2014-12-01T00:00:00Z
date_updated: 2026-07-29T10:06:44Z
day: '01'
degree_awarded: PhD
department:
- _id: JiFr
- _id: GradSch
doi_confirm: '1'
language:
- iso: eng
month: '12'
oa_version: None
page: '90'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '5805'
status: public
supervisor:
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
title: Molecular mechanisms of patterning and subcellular trafficking in Arabidopsis
  thaliana
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2014'
...
---
_id: '10895'
abstract:
- lang: eng
  text: 'Due to their sessile lifestyles, plants need to deal with the limitations
    and stresses imposed by the changing environment. Plants cope with these by a
    remarkable developmental flexibility, which is embedded in their strategy to survive.
    Plants can adjust their size, shape and number of organs, bend according to gravity
    and light, and regenerate tissues that were damaged, utilizing a coordinating,
    intercellular signal, the plant hormone, auxin. Another versatile signal is the
    cation, Ca2+, which is a crucial second messenger for many rapid cellular processes
    during responses to a wide range of endogenous and environmental signals, such
    as hormones, light, drought stress and others. Auxin is a good candidate for one
    of these Ca2+-activating signals. However, the role of auxin-induced Ca2+ signaling
    is poorly understood. Here, we will provide an overview of possible developmental
    and physiological roles, as well as mechanisms underlying the interconnection
    of Ca2+ and auxin signaling. '
article_processing_charge: No
article_type: original
author:
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Vanneste S, Friml J. Calcium: The missing link in auxin action. <i>Plants</i>.
    2013;2(4):650-675. doi:<a href="https://doi.org/10.3390/plants2040650">10.3390/plants2040650</a>'
  apa: 'Vanneste, S., &#38; Friml, J. (2013). Calcium: The missing link in auxin action.
    <i>Plants</i>. MDPI. <a href="https://doi.org/10.3390/plants2040650">https://doi.org/10.3390/plants2040650</a>'
  chicago: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin
    Action.” <i>Plants</i>. MDPI, 2013. <a href="https://doi.org/10.3390/plants2040650">https://doi.org/10.3390/plants2040650</a>.'
  ieee: 'S. Vanneste and J. Friml, “Calcium: The missing link in auxin action,” <i>Plants</i>,
    vol. 2, no. 4. MDPI, pp. 650–675, 2013.'
  ista: 'Vanneste S, Friml J. 2013. Calcium: The missing link in auxin action. Plants.
    2(4), 650–675.'
  mla: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.”
    <i>Plants</i>, vol. 2, no. 4, MDPI, 2013, pp. 650–75, doi:<a href="https://doi.org/10.3390/plants2040650">10.3390/plants2040650</a>.'
  short: S. Vanneste, J. Friml, Plants 2 (2013) 650–675.
corr_author: '1'
date_created: 2022-03-21T07:13:49Z
date_published: 2013-10-21T00:00:00Z
date_updated: 2024-10-09T21:01:52Z
day: '21'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.3390/plants2040650
external_id:
  pmid:
  - '27137397'
file:
- access_level: open_access
  checksum: fb4ff2e820e344e253c9197544610be6
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-21T12:12:56Z
  date_updated: 2022-03-21T12:12:56Z
  file_id: '10916'
  file_name: 2013_Plants_Vanneste.pdf
  file_size: 670188
  relation: main_file
  success: 1
file_date_updated: 2022-03-21T12:12:56Z
fulldoi: https://doi.org/10.3390/plants2040650
has_accepted_license: '1'
intvolume: '         2'
issue: '4'
keyword:
- Plant Science
- Ecology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '10'
oa: 1
oa_version: Published Version
page: 650-675
pmid: 1
publication: Plants
publication_identifier:
  issn:
  - 2223-7747
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Calcium: The missing link in auxin action'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2013'
...
