---
_id: '1996'
abstract:
- lang: eng
  text: Auxin polar transport, local maxima, and gradients have become an importantmodel
    system for studying self-organization. Auxin distribution is regulated by auxin-dependent
    positive feedback loops that are not well-understood at the molecular level. Previously,
    we showed the involvement of the RHO of Plants (ROP) effector INTERACTOR of CONSTITUTIVELY
    active ROP 1 (ICR1) in regulation of auxin transport and that ICR1 levels are
    posttranscriptionally repressed at the site of maximum auxin accumulation at the
    root tip. Here, we show that bimodal regulation of ICR1 levels by auxin is essential
    for regulating formation of auxin local maxima and gradients. ICR1 levels increase
    concomitant with increase in auxin response in lateral root primordia, cotyledon
    tips, and provascular tissues. However, in the embryo hypophysis and root meristem,
    when auxin exceeds critical levels, ICR1 is rapidly destabilized by an SCF(TIR1/AFB)
    [SKP, Cullin, F-box (transport inhibitor response 1/auxin signaling F-box protein)]-dependent
    auxin signaling mechanism. Furthermore, ectopic expression of ICR1 in the embryo
    hypophysis resulted in reduction of auxin accumulation and concomitant root growth
    arrest. ICR1 disappeared during root regeneration and lateral root initiation
    concomitantly with the formation of a local auxin maximum in response to external
    auxin treatments and transiently after gravitropic stimulation. Destabilization
    of ICR1 was impaired after inhibition of auxin transport and signaling, proteasome
    function, and protein synthesis. A mathematical model based on these findings
    shows that an in vivo-like auxin distribution, rootward auxin flux, and shootward
    reflux can be simulated without assuming preexisting tissue polarity. Our experimental
    results and mathematical modeling indicate that regulation of auxin distribution
    is tightly associated with auxin-dependent ICR1 levels.
article_processing_charge: No
author:
- first_name: Ora
  full_name: Hazak, Ora
  last_name: Hazak
- first_name: Uri
  full_name: Obolski, Uri
  last_name: Obolski
- first_name: Tomas
  full_name: Prat, Tomas
  id: 3DA3BFEE-F248-11E8-B48F-1D18A9856A87
  last_name: Prat
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Lilach
  full_name: Hadany, Lilach
  last_name: Hadany
- first_name: Shaul
  full_name: Yalovsky, Shaul
  last_name: Yalovsky
citation:
  ama: Hazak O, Obolski U, Prat T, Friml J, Hadany L, Yalovsky S. Bimodal regulation
    of ICR1 levels generates self-organizing auxin distribution. <i>PNAS</i>. 2014;111(50):E5471-E5479.
    doi:<a href="https://doi.org/10.1073/pnas.1413918111">10.1073/pnas.1413918111</a>
  apa: Hazak, O., Obolski, U., Prat, T., Friml, J., Hadany, L., &#38; Yalovsky, S.
    (2014). Bimodal regulation of ICR1 levels generates self-organizing auxin distribution.
    <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1413918111">https://doi.org/10.1073/pnas.1413918111</a>
  chicago: Hazak, Ora, Uri Obolski, Tomas Prat, Jiří Friml, Lilach Hadany, and Shaul
    Yalovsky. “Bimodal Regulation of ICR1 Levels Generates Self-Organizing Auxin Distribution.”
    <i>PNAS</i>. National Academy of Sciences, 2014. <a href="https://doi.org/10.1073/pnas.1413918111">https://doi.org/10.1073/pnas.1413918111</a>.
  ieee: O. Hazak, U. Obolski, T. Prat, J. Friml, L. Hadany, and S. Yalovsky, “Bimodal
    regulation of ICR1 levels generates self-organizing auxin distribution,” <i>PNAS</i>,
    vol. 111, no. 50. National Academy of Sciences, pp. E5471–E5479, 2014.
  ista: Hazak O, Obolski U, Prat T, Friml J, Hadany L, Yalovsky S. 2014. Bimodal regulation
    of ICR1 levels generates self-organizing auxin distribution. PNAS. 111(50), E5471–E5479.
  mla: Hazak, Ora, et al. “Bimodal Regulation of ICR1 Levels Generates Self-Organizing
    Auxin Distribution.” <i>PNAS</i>, vol. 111, no. 50, National Academy of Sciences,
    2014, pp. E5471–79, doi:<a href="https://doi.org/10.1073/pnas.1413918111">10.1073/pnas.1413918111</a>.
  short: O. Hazak, U. Obolski, T. Prat, J. Friml, L. Hadany, S. Yalovsky, PNAS 111
    (2014) E5471–E5479.
date_created: 2018-12-11T11:55:07Z
date_published: 2014-12-16T00:00:00Z
date_updated: 2025-09-29T12:06:13Z
day: '16'
department:
- _id: JiFr
doi: 10.1073/pnas.1413918111
external_id:
  isi:
  - '000346366500020'
fulldoi: https://doi.org/10.1073/pnas.1413918111
intvolume: '       111'
isi: 1
issue: '50'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4273421/
month: '12'
oa: 1
oa_version: Submitted Version
page: E5471 - E5479
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5083'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bimodal regulation of ICR1 levels generates self-organizing auxin distribution
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 111
year: '2014'
...
---
_id: '2061'
abstract:
- lang: eng
  text: 'Development of cambium and its activity is important for our knowledge of
    the mechanism of secondary growth. Arabidopsis thaliana emerges as a good model
    plant for such a kind of study. Thus, this paper reports on cellular events taking
    place in the interfascicular regions of inflorescence stems of A. thaliana, leading
    to the development of interfascicular cambium from differentiated interfascicular
    parenchyma cells (IPC). These events are as follows: appearance of auxin accumulation,
    PIN1 gene expression, polar PIN1 protein localization in the basal plasma membrane
    and periclinal divisions. Distribution of auxin was observed to be higher in differentiating
    into cambium parenchyma cells compared to cells within the pith and cortex. Expression
    of PIN1 in IPC was always preceded by auxin accumulation. Basal localization of
    PIN1 was already established in the cells prior to their periclinal division.
    These cellular events initiated within parenchyma cells adjacent to the vascular
    bundles and successively extended from that point towards the middle region of
    the interfascicular area, located between neighboring vascular bundles. The final
    consequence of which was the closure of the cambial ring within the stem. Changes
    in the chemical composition of IPC walls were also detected and included changes
    of pectic epitopes, xyloglucans (XG) and extensins rich in hydroxyproline (HRGPs).
    In summary, results presented in this paper describe interfascicular cambium ontogenesis
    in terms of successive cellular events in the interfascicular regions of inflorescence
    stems of Arabidopsis.'
article_processing_charge: No
author:
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Ewa
  full_name: Kurczyñska, Ewa
  last_name: Kurczyñska
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Mazur E, Kurczyñska E, Friml J. Cellular events during interfascicular cambium
    ontogenesis in inflorescence stems of Arabidopsis. <i>Protoplasma</i>. 2014;251(5):1125-1139.
    doi:<a href="https://doi.org/10.1007/s00709-014-0620-5">10.1007/s00709-014-0620-5</a>
  apa: Mazur, E., Kurczyñska, E., &#38; Friml, J. (2014). Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis. <i>Protoplasma</i>.
    Springer. <a href="https://doi.org/10.1007/s00709-014-0620-5">https://doi.org/10.1007/s00709-014-0620-5</a>
  chicago: Mazur, Ewa, Ewa Kurczyñska, and Jiří Friml. “Cellular Events during Interfascicular
    Cambium Ontogenesis in Inflorescence Stems of Arabidopsis.” <i>Protoplasma</i>.
    Springer, 2014. <a href="https://doi.org/10.1007/s00709-014-0620-5">https://doi.org/10.1007/s00709-014-0620-5</a>.
  ieee: E. Mazur, E. Kurczyñska, and J. Friml, “Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis,” <i>Protoplasma</i>,
    vol. 251, no. 5. Springer, pp. 1125–1139, 2014.
  ista: Mazur E, Kurczyñska E, Friml J. 2014. Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. 251(5),
    1125–1139.
  mla: Mazur, Ewa, et al. “Cellular Events during Interfascicular Cambium Ontogenesis
    in Inflorescence Stems of Arabidopsis.” <i>Protoplasma</i>, vol. 251, no. 5, Springer,
    2014, pp. 1125–39, doi:<a href="https://doi.org/10.1007/s00709-014-0620-5">10.1007/s00709-014-0620-5</a>.
  short: E. Mazur, E. Kurczyñska, J. Friml, Protoplasma 251 (2014) 1125–1139.
date_created: 2018-12-11T11:55:29Z
date_published: 2014-02-14T00:00:00Z
date_updated: 2025-09-29T11:48:32Z
day: '14'
department:
- _id: JiFr
doi: 10.1007/s00709-014-0620-5
external_id:
  isi:
  - '000340480300012'
fulldoi: https://doi.org/10.1007/s00709-014-0620-5
intvolume: '       251'
isi: 1
issue: '5'
language:
- iso: eng
month: '02'
oa_version: None
page: 1125 - 1139
publication: Protoplasma
publication_status: published
publisher: Springer
publist_id: '4985'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cellular events during interfascicular cambium ontogenesis in inflorescence
  stems of Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 251
year: '2014'
...
---
_id: '1806'
abstract:
- lang: eng
  text: The generation of asymmetry, at both cellular and tissue level, is one of
    the most essential capabilities of all eukaryotic organisms. It mediates basically
    all multicellular development ranging from embryogenesis and de novo organ formation
    till responses to various environmental stimuli. In plants, the awe-inspiring
    number of such processes is regulated by phytohormone auxin and its directional,
    cell-to-cell transport. The mediators of this transport, PIN auxin transporters,
    are asymmetrically localized at the plasma membrane, and this polar localization
    determines the directionality of intercellular auxin flow. Thus, auxin transport
    contributes crucially to the generation of local auxin gradients or maxima, which
    instruct given cell to change its developmental program. Here, we introduce and
    discuss the molecular components and cellular mechanisms regulating the generation
    and maintenance of cellular PIN polarity, as the general hallmarks of cell polarity
    in plants.
author:
- first_name: Pawel
  full_name: Baster, Pawel
  id: 3028BD74-F248-11E8-B48F-1D18A9856A87
  last_name: Baster
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Baster P, Friml J. Auxin on the road navigated by cellular PIN polarity. In:
    Zažímalová E, Petrášek J, Benková E, eds. <i>Auxin and Its Role in Plant Development</i>.
    Springer; 2014:143-170. doi:<a href="https://doi.org/10.1007/978-3-7091-1526-8_8">10.1007/978-3-7091-1526-8_8</a>'
  apa: Baster, P., &#38; Friml, J. (2014). Auxin on the road navigated by cellular
    PIN polarity. In E. Zažímalová, J. Petrášek, &#38; E. Benková (Eds.), <i>Auxin
    and Its Role in Plant Development</i> (pp. 143–170). Springer. <a href="https://doi.org/10.1007/978-3-7091-1526-8_8">https://doi.org/10.1007/978-3-7091-1526-8_8</a>
  chicago: Baster, Pawel, and Jiří Friml. “Auxin on the Road Navigated by Cellular
    PIN Polarity.” In <i>Auxin and Its Role in Plant Development</i>, edited by Eva
    Zažímalová, Jan Petrášek, and Eva Benková, 143–70. Springer, 2014. <a href="https://doi.org/10.1007/978-3-7091-1526-8_8">https://doi.org/10.1007/978-3-7091-1526-8_8</a>.
  ieee: P. Baster and J. Friml, “Auxin on the road navigated by cellular PIN polarity,”
    in <i>Auxin and Its Role in Plant Development</i>, E. Zažímalová, J. Petrášek,
    and E. Benková, Eds. Springer, 2014, pp. 143–170.
  ista: 'Baster P, Friml J. 2014.Auxin on the road navigated by cellular PIN polarity.
    In: Auxin and Its Role in Plant Development. , 143–170.'
  mla: Baster, Pawel, and Jiří Friml. “Auxin on the Road Navigated by Cellular PIN
    Polarity.” <i>Auxin and Its Role in Plant Development</i>, edited by Eva Zažímalová
    et al., Springer, 2014, pp. 143–70, doi:<a href="https://doi.org/10.1007/978-3-7091-1526-8_8">10.1007/978-3-7091-1526-8_8</a>.
  short: P. Baster, J. Friml, in:, E. Zažímalová, J. Petrášek, E. Benková (Eds.),
    Auxin and Its Role in Plant Development, Springer, 2014, pp. 143–170.
corr_author: '1'
date_created: 2018-12-11T11:54:07Z
date_published: 2014-04-01T00:00:00Z
date_updated: 2024-10-09T20:55:54Z
day: '01'
department:
- _id: JiFr
doi: 10.1007/978-3-7091-1526-8_8
editor:
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
fulldoi: https://doi.org/10.1007/978-3-7091-1526-8_8
language:
- iso: eng
month: '04'
oa_version: None
page: 143 - 170
publication: Auxin and Its Role in Plant Development
publication_status: published
publisher: Springer
publist_id: '5304'
quality_controlled: '1'
scopus_import: 1
status: public
title: Auxin on the road navigated by cellular PIN polarity
type: book_chapter
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
OA_place: publisher
_id: '1402'
abstract:
- lang: eng
  text: Phosphatidylinositol (Ptdlns) is a structural phospholipid that can be phosphorylated
    into various lipid signaling molecules, designated polyphosphoinositides (PPIs).
    The reversible phosphorylation of PPIs on the 3, 4, or 5 position of inositol
    is performed by a set of organelle-specific kinases and phosphatases, and the
    characteristic head groups make these molecules ideal for regulating biological
    processes in time and space. In yeast and mammals, Ptdlns3P and Ptdlns(3,5)P2
    play crucial roles in trafficking toward the lytic compartments, whereas the role
    in plants is not yet fully understood. Here we identified the role of a land plant-specific
    subgroup of PPI phosphatases, the suppressor of actin 2 (SAC2) to SAC5, during
    vauolar trafficking and morphogenesis in Arabidopsis thaliana. SAC2-SAC5 localize
    to the tonoplast along with Ptdlns3P, the presumable product of their activity.
    in SAC gain- and loss-of-function mutants, the levels of Ptdlns monophosphates
    and bisphosphates were changed, with opposite effects on the morphology of storage
    and lytic vacuoles, and the trafficking toward the vacuoles was defective. Moreover,
    multiple sac knockout mutants had an increased number of smaller storage and lytic
    vacuoles, whereas extralarge vacuoles were observed in the overexpression lines,
    correlating with various growth and developmental defects. The fragmented vacuolar
    phenotype of sac mutants could be mimicked by treating wild-type seedlings with
    Ptdlns(3,5)P2, corroborating that this PPI is important for vacuole morphology.
    Taken together, these results provide evidence that PPIs, together with their
    metabolic enzymes SAC2-SAC5, are crucial for vacuolar trafficking and for vacuolar
    morphology and function in plants.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Petra
  full_name: Marhavá, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavá
citation:
  ama: Marhavá P. Molecular mechanisms of patterning and subcellular trafficking in
    Arabidopsis thaliana. 2014.
  apa: Marhavá, P. (2014). <i>Molecular mechanisms of patterning and subcellular trafficking
    in Arabidopsis thaliana</i>. Institute of Science and Technology Austria.
  chicago: Marhavá, Petra. “Molecular Mechanisms of Patterning and Subcellular Trafficking
    in Arabidopsis Thaliana.” Institute of Science and Technology Austria, 2014.
  ieee: P. Marhavá, “Molecular mechanisms of patterning and subcellular trafficking
    in Arabidopsis thaliana,” Institute of Science and Technology Austria, 2014.
  ista: Marhavá P. 2014. Molecular mechanisms of patterning and subcellular trafficking
    in Arabidopsis thaliana. Institute of Science and Technology Austria.
  mla: Marhavá, Petra. <i>Molecular Mechanisms of Patterning and Subcellular Trafficking
    in Arabidopsis Thaliana</i>. Institute of Science and Technology Austria, 2014.
  short: P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking
    in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2014.
corr_author: '1'
date_created: 2018-12-11T11:51:49Z
date_published: 2014-12-01T00:00:00Z
date_updated: 2026-07-29T10:06:44Z
day: '01'
degree_awarded: PhD
department:
- _id: JiFr
- _id: GradSch
doi_confirm: '1'
language:
- iso: eng
month: '12'
oa_version: None
page: '90'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '5805'
status: public
supervisor:
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
title: Molecular mechanisms of patterning and subcellular trafficking in Arabidopsis
  thaliana
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2014'
...
---
_id: '10895'
abstract:
- lang: eng
  text: 'Due to their sessile lifestyles, plants need to deal with the limitations
    and stresses imposed by the changing environment. Plants cope with these by a
    remarkable developmental flexibility, which is embedded in their strategy to survive.
    Plants can adjust their size, shape and number of organs, bend according to gravity
    and light, and regenerate tissues that were damaged, utilizing a coordinating,
    intercellular signal, the plant hormone, auxin. Another versatile signal is the
    cation, Ca2+, which is a crucial second messenger for many rapid cellular processes
    during responses to a wide range of endogenous and environmental signals, such
    as hormones, light, drought stress and others. Auxin is a good candidate for one
    of these Ca2+-activating signals. However, the role of auxin-induced Ca2+ signaling
    is poorly understood. Here, we will provide an overview of possible developmental
    and physiological roles, as well as mechanisms underlying the interconnection
    of Ca2+ and auxin signaling. '
article_processing_charge: No
article_type: original
author:
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Vanneste S, Friml J. Calcium: The missing link in auxin action. <i>Plants</i>.
    2013;2(4):650-675. doi:<a href="https://doi.org/10.3390/plants2040650">10.3390/plants2040650</a>'
  apa: 'Vanneste, S., &#38; Friml, J. (2013). Calcium: The missing link in auxin action.
    <i>Plants</i>. MDPI. <a href="https://doi.org/10.3390/plants2040650">https://doi.org/10.3390/plants2040650</a>'
  chicago: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin
    Action.” <i>Plants</i>. MDPI, 2013. <a href="https://doi.org/10.3390/plants2040650">https://doi.org/10.3390/plants2040650</a>.'
  ieee: 'S. Vanneste and J. Friml, “Calcium: The missing link in auxin action,” <i>Plants</i>,
    vol. 2, no. 4. MDPI, pp. 650–675, 2013.'
  ista: 'Vanneste S, Friml J. 2013. Calcium: The missing link in auxin action. Plants.
    2(4), 650–675.'
  mla: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.”
    <i>Plants</i>, vol. 2, no. 4, MDPI, 2013, pp. 650–75, doi:<a href="https://doi.org/10.3390/plants2040650">10.3390/plants2040650</a>.'
  short: S. Vanneste, J. Friml, Plants 2 (2013) 650–675.
corr_author: '1'
date_created: 2022-03-21T07:13:49Z
date_published: 2013-10-21T00:00:00Z
date_updated: 2024-10-09T21:01:52Z
day: '21'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.3390/plants2040650
external_id:
  pmid:
  - '27137397'
file:
- access_level: open_access
  checksum: fb4ff2e820e344e253c9197544610be6
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-21T12:12:56Z
  date_updated: 2022-03-21T12:12:56Z
  file_id: '10916'
  file_name: 2013_Plants_Vanneste.pdf
  file_size: 670188
  relation: main_file
  success: 1
file_date_updated: 2022-03-21T12:12:56Z
fulldoi: https://doi.org/10.3390/plants2040650
has_accepted_license: '1'
intvolume: '         2'
issue: '4'
keyword:
- Plant Science
- Ecology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '10'
oa: 1
oa_version: Published Version
page: 650-675
pmid: 1
publication: Plants
publication_identifier:
  issn:
  - 2223-7747
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Calcium: The missing link in auxin action'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2013'
...
---
_id: '2290'
abstract:
- lang: eng
  text: The plant hormone indole-acetic acid (auxin) is essential for many aspects
    of plant development. Auxin-mediated growth regulation typically involves the
    establishment of an auxin concentration gradient mediated by polarly localized
    auxin transporters. The localization of auxin carriers and their amount at the
    plasma membrane are controlled by membrane trafficking processes such as secretion,
    endocytosis, and recycling. In contrast to endocytosis or recycling, how the secretory
    pathway mediates the localization of auxin carriers is not well understood. In
    this study we have used the differential cell elongation process during apical
    hook development to elucidate the mechanisms underlying the post-Golgi trafficking
    of auxin carriers in Arabidopsis. We show that differential cell elongation during
    apical hook development is defective in Arabidopsis mutant echidna (ech). ECH
    protein is required for the trans-Golgi network (TGN)-mediated trafficking of
    the auxin influx carrier AUX1 to the plasma membrane. In contrast, ech mutation
    only marginally perturbs the trafficking of the highly related auxin influx carrier
    LIKE-AUX1-3 or the auxin efflux carrier PIN-FORMED-3, both also involved in hook
    development. Electron tomography reveals that the trafficking defects in ech mutant
    are associated with the perturbation of secretory vesicle genesis from the TGN.
    Our results identify differential mechanisms for the post-Golgi trafficking of
    de novo-synthesized auxin carriers to plasma membrane from the TGN and reveal
    how trafficking of auxin influx carriers mediates the control of differential
    cell elongation in apical hook development.
article_processing_charge: No
author:
- first_name: Yohann
  full_name: Boutté, Yohann
  last_name: Boutté
- first_name: Kristoffer
  full_name: Jonsson, Kristoffer
  last_name: Jonsson
- first_name: Heather
  full_name: Mcfarlane, Heather
  last_name: Mcfarlane
- first_name: Errin
  full_name: Johnson, Errin
  last_name: Johnson
- first_name: Delphine
  full_name: Gendre, Delphine
  last_name: Gendre
- first_name: Ranjan
  full_name: Swarup, Ranjan
  last_name: Swarup
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Lacey
  full_name: Samuels, Lacey
  last_name: Samuels
- first_name: Stéphanie
  full_name: Robert, Stéphanie
  last_name: Robert
- first_name: Rishikesh
  full_name: Bhalerao, Rishikesh
  last_name: Bhalerao
citation:
  ama: Boutté Y, Jonsson K, Mcfarlane H, et al. ECHIDNA mediated post Golgi trafficking
    of auxin carriers for differential cell elongation. <i>PNAS</i>. 2013;110(40):16259-16264.
    doi:<a href="https://doi.org/10.1073/pnas.1309057110">10.1073/pnas.1309057110</a>
  apa: Boutté, Y., Jonsson, K., Mcfarlane, H., Johnson, E., Gendre, D., Swarup, R.,
    … Bhalerao, R. (2013). ECHIDNA mediated post Golgi trafficking of auxin carriers
    for differential cell elongation. <i>PNAS</i>. National Academy of Sciences. <a
    href="https://doi.org/10.1073/pnas.1309057110">https://doi.org/10.1073/pnas.1309057110</a>
  chicago: Boutté, Yohann, Kristoffer Jonsson, Heather Mcfarlane, Errin Johnson, Delphine
    Gendre, Ranjan Swarup, Jiří Friml, Lacey Samuels, Stéphanie Robert, and Rishikesh
    Bhalerao. “ECHIDNA Mediated Post Golgi Trafficking of Auxin Carriers for Differential
    Cell Elongation.” <i>PNAS</i>. National Academy of Sciences, 2013. <a href="https://doi.org/10.1073/pnas.1309057110">https://doi.org/10.1073/pnas.1309057110</a>.
  ieee: Y. Boutté <i>et al.</i>, “ECHIDNA mediated post Golgi trafficking of auxin
    carriers for differential cell elongation,” <i>PNAS</i>, vol. 110, no. 40. National
    Academy of Sciences, pp. 16259–16264, 2013.
  ista: Boutté Y, Jonsson K, Mcfarlane H, Johnson E, Gendre D, Swarup R, Friml J,
    Samuels L, Robert S, Bhalerao R. 2013. ECHIDNA mediated post Golgi trafficking
    of auxin carriers for differential cell elongation. PNAS. 110(40), 16259–16264.
  mla: Boutté, Yohann, et al. “ECHIDNA Mediated Post Golgi Trafficking of Auxin Carriers
    for Differential Cell Elongation.” <i>PNAS</i>, vol. 110, no. 40, National Academy
    of Sciences, 2013, pp. 16259–64, doi:<a href="https://doi.org/10.1073/pnas.1309057110">10.1073/pnas.1309057110</a>.
  short: Y. Boutté, K. Jonsson, H. Mcfarlane, E. Johnson, D. Gendre, R. Swarup, J.
    Friml, L. Samuels, S. Robert, R. Bhalerao, PNAS 110 (2013) 16259–16264.
date_created: 2018-12-11T11:56:48Z
date_published: 2013-10-01T00:00:00Z
date_updated: 2025-09-29T14:22:33Z
day: '01'
department:
- _id: JiFr
doi: 10.1073/pnas.1309057110
external_id:
  isi:
  - '000325105500090'
  pmid:
  - '24043780'
fulldoi: https://doi.org/10.1073/pnas.1309057110
intvolume: '       110'
isi: 1
issue: '40'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791722/
month: '10'
oa: 1
oa_version: Submitted Version
page: 16259 - 16264
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '4639'
quality_controlled: '1'
scopus_import: '1'
status: public
title: ECHIDNA mediated post Golgi trafficking of auxin carriers for differential
  cell elongation
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2013'
...
---
_id: '2448'
abstract:
- lang: eng
  text: Cell-to-cell directional flow of the phytohormone auxin is primarily established
    by polar localization of the PIN auxin transporters, a process tightly regulated
    at multiple levels by auxin itself. We recently reported that, in the context
    of strong auxin flows, activity of the vacuolar ZIFL1.1 transporter is required
    for fine-tuning of polar auxin transport rates in the Arabidopsis root. In particular,
    ZIFL1.1 function protects plasma-membrane stability of the PIN2 carrier in epidermal
    root tip cells under conditions normally triggering PIN2 degradation. Here, we
    show that ZIFL1.1 activity at the root tip also promotes PIN1 plasma-membrane
    abundance in central cylinder cells, thus supporting the notion that ZIFL1.1 acts
    as a general positive modulator of polar auxin transport in roots.
article_number: e25688
article_processing_charge: No
article_type: original
author:
- first_name: Estelle
  full_name: Remy, Estelle
  last_name: Remy
- first_name: Pawel
  full_name: Baster, Pawel
  id: 3028BD74-F248-11E8-B48F-1D18A9856A87
  last_name: Baster
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Paula
  full_name: Duque, Paula
  last_name: Duque
citation:
  ama: Remy E, Baster P, Friml J, Duque P. ZIFL1.1 transporter modulates polar auxin
    transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root
    tip. <i>Plant Signaling &#38; Behavior</i>. 2013;8(10). doi:<a href="https://doi.org/10.4161/psb.25688">10.4161/psb.25688</a>
  apa: Remy, E., Baster, P., Friml, J., &#38; Duque, P. (2013). ZIFL1.1 transporter
    modulates polar auxin transport by stabilizing membrane abundance of multiple
    PINs in Arabidopsis root tip. <i>Plant Signaling &#38; Behavior</i>. Taylor &#38;
    Francis. <a href="https://doi.org/10.4161/psb.25688">https://doi.org/10.4161/psb.25688</a>
  chicago: Remy, Estelle, Pawel Baster, Jiří Friml, and Paula Duque. “ZIFL1.1 Transporter
    Modulates Polar Auxin Transport by Stabilizing Membrane Abundance of Multiple
    PINs in Arabidopsis Root Tip.” <i>Plant Signaling &#38; Behavior</i>. Taylor &#38;
    Francis, 2013. <a href="https://doi.org/10.4161/psb.25688">https://doi.org/10.4161/psb.25688</a>.
  ieee: E. Remy, P. Baster, J. Friml, and P. Duque, “ZIFL1.1 transporter modulates
    polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis
    root tip,” <i>Plant Signaling &#38; Behavior</i>, vol. 8, no. 10. Taylor &#38;
    Francis, 2013.
  ista: Remy E, Baster P, Friml J, Duque P. 2013. ZIFL1.1 transporter modulates polar
    auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis
    root tip. Plant Signaling &#38; Behavior. 8(10), e25688.
  mla: Remy, Estelle, et al. “ZIFL1.1 Transporter Modulates Polar Auxin Transport
    by Stabilizing Membrane Abundance of Multiple PINs in Arabidopsis Root Tip.” <i>Plant
    Signaling &#38; Behavior</i>, vol. 8, no. 10, e25688, Taylor &#38; Francis, 2013,
    doi:<a href="https://doi.org/10.4161/psb.25688">10.4161/psb.25688</a>.
  short: E. Remy, P. Baster, J. Friml, P. Duque, Plant Signaling &#38; Behavior 8
    (2013).
date_created: 2018-12-11T11:57:43Z
date_published: 2013-07-10T00:00:00Z
date_updated: 2025-04-15T07:48:02Z
day: '10'
department:
- _id: JiFr
doi: 10.4161/psb.25688
ec_funded: 1
external_id:
  pmid:
  - '23857365'
fulldoi: https://doi.org/10.4161/psb.25688
intvolume: '         8'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091088/
month: '07'
oa: 1
oa_version: Submitted Version
pmid: 1
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Plant Signaling & Behavior
publication_status: published
publisher: Taylor & Francis
publist_id: '4455'
quality_controlled: '1'
scopus_import: '1'
status: public
title: ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane
  abundance of multiple PINs in Arabidopsis root tip
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2013'
...
---
_id: '2449'
abstract:
- lang: eng
  text: 'Intracellular protein routing is mediated by vesicular transport which is
    tightly regulated in eukaryotes. The protein and lipid homeostasis depends on
    coordinated delivery of de novo synthesized or recycled cargoes to the plasma
    membrane by exocytosis and their subsequent removal by rerouting them for recycling
    or degradation. Here, we report the characterization of protein affected trafficking
    3 (pat3) mutant that we identified by an epifluorescence-based forward genetic
    screen for mutants defective in subcellular distribution of Arabidopsis auxin
    transporter PIN1–GFP. While pat3 displays largely normal plant morphology and
    development in nutrient-rich conditions, it shows strong ectopic intracellular
    accumulations of different plasma membrane cargoes in structures that resemble
    prevacuolar compartments (PVC) with an aberrant morphology. Genetic mapping revealed
    that pat3 is defective in vacuolar protein sorting 35A (VPS35A), a putative subunit
    of the retromer complex that mediates retrograde trafficking between the PVC and
    trans-Golgi network. Similarly, a mutant defective in another retromer subunit,
    vps29, shows comparable subcellular defects in PVC morphology and protein accumulation.
    Thus, our data provide evidence that the retromer components VPS35A and VPS29
    are essential for normal PVC morphology and normal trafficking of plasma membrane
    proteins in plants. In addition, we show that, out of the three VPS35 retromer
    subunits present in Arabidopsis thaliana genome, the VPS35 homolog A plays a prevailing
    role in trafficking to the lytic vacuole, presenting another level of complexity
    in the retromer-dependent vacuolar sorting. '
article_processing_charge: No
author:
- first_name: Tomasz
  full_name: Nodzyński, Tomasz
  last_name: Nodzyński
- first_name: Murguel
  full_name: Feraru, Murguel
  last_name: Feraru
- first_name: Sibylle
  full_name: Hirsch, Sibylle
  last_name: Hirsch
- first_name: Riet
  full_name: De Rycke, Riet
  last_name: De Rycke
- first_name: Claudiu
  full_name: Nicuales, Claudiu
  last_name: Nicuales
- first_name: Jelle
  full_name: Van Leene, Jelle
  last_name: Van Leene
- first_name: Geert
  full_name: De Jaeger, Geert
  last_name: De Jaeger
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Nodzyński T, Feraru M, Hirsch S, et al. Retromer subunits VPS35A and VPS29
    mediate prevacuolar compartment (PVC) function in Arabidopsis. <i>Molecular Plant</i>.
    2013;6(6):1849-1862. doi:<a href="https://doi.org/10.1093/mp/sst044">10.1093/mp/sst044</a>
  apa: Nodzyński, T., Feraru, M., Hirsch, S., De Rycke, R., Nicuales, C., Van Leene,
    J., … Friml, J. (2013). Retromer subunits VPS35A and VPS29 mediate prevacuolar
    compartment (PVC) function in Arabidopsis. <i>Molecular Plant</i>. Cell Press.
    <a href="https://doi.org/10.1093/mp/sst044">https://doi.org/10.1093/mp/sst044</a>
  chicago: Nodzyński, Tomasz, Murguel Feraru, Sibylle Hirsch, Riet De Rycke, Claudiu
    Nicuales, Jelle Van Leene, Geert De Jaeger, Steffen Vanneste, and Jiří Friml.
    “Retromer Subunits VPS35A and VPS29 Mediate Prevacuolar Compartment (PVC) Function
    in Arabidopsis.” <i>Molecular Plant</i>. Cell Press, 2013. <a href="https://doi.org/10.1093/mp/sst044">https://doi.org/10.1093/mp/sst044</a>.
  ieee: T. Nodzyński <i>et al.</i>, “Retromer subunits VPS35A and VPS29 mediate prevacuolar
    compartment (PVC) function in Arabidopsis,” <i>Molecular Plant</i>, vol. 6, no.
    6. Cell Press, pp. 1849–1862, 2013.
  ista: Nodzyński T, Feraru M, Hirsch S, De Rycke R, Nicuales C, Van Leene J, De Jaeger
    G, Vanneste S, Friml J. 2013. Retromer subunits VPS35A and VPS29 mediate prevacuolar
    compartment (PVC) function in Arabidopsis. Molecular Plant. 6(6), 1849–1862.
  mla: Nodzyński, Tomasz, et al. “Retromer Subunits VPS35A and VPS29 Mediate Prevacuolar
    Compartment (PVC) Function in Arabidopsis.” <i>Molecular Plant</i>, vol. 6, no.
    6, Cell Press, 2013, pp. 1849–62, doi:<a href="https://doi.org/10.1093/mp/sst044">10.1093/mp/sst044</a>.
  short: T. Nodzyński, M. Feraru, S. Hirsch, R. De Rycke, C. Nicuales, J. Van Leene,
    G. De Jaeger, S. Vanneste, J. Friml, Molecular Plant 6 (2013) 1849–1862.
corr_author: '1'
date_created: 2018-12-11T11:57:44Z
date_published: 2013-11-01T00:00:00Z
date_updated: 2025-09-29T14:14:22Z
day: '01'
department:
- _id: JiFr
doi: 10.1093/mp/sst044
external_id:
  isi:
  - '000327541200010'
fulldoi: https://doi.org/10.1093/mp/sst044
intvolume: '         6'
isi: 1
issue: '6'
language:
- iso: eng
month: '11'
oa_version: None
page: 1849 - 1862
publication: Molecular Plant
publication_status: published
publisher: Cell Press
publist_id: '4454'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function
  in Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 6
year: '2013'
...
---
_id: '2470'
abstract:
- lang: eng
  text: Background:Auxin binding protein 1 (ABP1) is a putative auxin receptor and
    its function is indispensable for plant growth and development. ABP1 has been
    shown to be involved in auxin-dependent regulation of cell division and expansion,
    in plasma-membrane-related processes such as changes in transmembrane potential,
    and in the regulation of clathrin-dependent endocytosis. However, the ABP1-regulated
    downstream pathway remains elusive.Methodology/Principal Findings:Using auxin
    transport assays and quantitative analysis of cellular morphology we show that
    ABP1 regulates auxin efflux from tobacco BY-2 cells. The overexpression of ABP1can
    counterbalance increased auxin efflux and auxin starvation phenotypes caused by
    the overexpression of PIN auxin efflux carrier. Relevant mechanism involves the
    ABP1-controlled vesicle trafficking processes, including positive regulation of
    endocytosis of PIN auxin efflux carriers, as indicated by fluorescence recovery
    after photobleaching (FRAP) and pharmacological manipulations.Conclusions/Significance:The
    findings indicate the involvement of ABP1 in control of rate of auxin transport
    across plasma membrane emphasizing the role of ABP1 in regulation of PIN activity
    at the plasma membrane, and highlighting the relevance of ABP1 for the formation
    of developmentally important, PIN-dependent auxin gradients.
article_number: e70050
article_processing_charge: No
author:
- first_name: Milada
  full_name: Čovanová, Milada
  last_name: Čovanová
- first_name: Michael
  full_name: Sauer, Michael
  last_name: Sauer
- first_name: Jan
  full_name: Rychtář, Jan
  last_name: Rychtář
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
citation:
  ama: Čovanová M, Sauer M, Rychtář J, Friml J, Petrášek J, Zažímalová E. Overexpression
    of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco
    cells. <i>PLoS One</i>. 2013;8(7). doi:<a href="https://doi.org/10.1371/journal.pone.0070050">10.1371/journal.pone.0070050</a>
  apa: Čovanová, M., Sauer, M., Rychtář, J., Friml, J., Petrášek, J., &#38; Zažímalová,
    E. (2013). Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent
    auxin transport in tobacco cells. <i>PLoS One</i>. Public Library of Science.
    <a href="https://doi.org/10.1371/journal.pone.0070050">https://doi.org/10.1371/journal.pone.0070050</a>
  chicago: Čovanová, Milada, Michael Sauer, Jan Rychtář, Jiří Friml, Jan Petrášek,
    and Eva Zažímalová. “Overexpression of the Auxin Binding PROTEIN1 Modulates PIN-Dependent
    Auxin Transport in Tobacco Cells.” <i>PLoS One</i>. Public Library of Science,
    2013. <a href="https://doi.org/10.1371/journal.pone.0070050">https://doi.org/10.1371/journal.pone.0070050</a>.
  ieee: M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, and E. Zažímalová,
    “Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport
    in tobacco cells,” <i>PLoS One</i>, vol. 8, no. 7. Public Library of Science,
    2013.
  ista: Čovanová M, Sauer M, Rychtář J, Friml J, Petrášek J, Zažímalová E. 2013. Overexpression
    of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco
    cells. PLoS One. 8(7), e70050.
  mla: Čovanová, Milada, et al. “Overexpression of the Auxin Binding PROTEIN1 Modulates
    PIN-Dependent Auxin Transport in Tobacco Cells.” <i>PLoS One</i>, vol. 8, no.
    7, e70050, Public Library of Science, 2013, doi:<a href="https://doi.org/10.1371/journal.pone.0070050">10.1371/journal.pone.0070050</a>.
  short: M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, E. Zažímalová,
    PLoS One 8 (2013).
date_created: 2018-12-11T11:57:51Z
date_published: 2013-07-23T00:00:00Z
date_updated: 2025-09-29T14:11:54Z
day: '23'
ddc:
- '570'
department:
- _id: JiFr
doi: 10.1371/journal.pone.0070050
external_id:
  isi:
  - '000325211000181'
file:
- access_level: open_access
  checksum: 2d47ef47616ef4de1d517d146548184e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:21Z
  date_updated: 2020-07-14T12:45:41Z
  file_id: '4681'
  file_name: IST-2016-413-v1+1_journal.pone.0070050.pdf
  file_size: 2294955
  relation: main_file
file_date_updated: 2020-07-14T12:45:41Z
fulldoi: https://doi.org/10.1371/journal.pone.0070050
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '4432'
pubrep_id: '413'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin
  transport in tobacco cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2013'
...
---
_id: '2472'
abstract:
- lang: eng
  text: Plant-specific PIN-formed (PIN) efflux transporters for the plant hormone
    auxin are required for tissue-specific directional auxin transport and cellular
    auxin homeostasis. The Arabidopsis PIN protein family has been shown to play important
    roles in developmental processes such as embryogenesis, organogenesis, vascular
    tissue differentiation, root meristem patterning and tropic growth. Here we analyzed
    roles of the less characterised Arabidopsis PIN6 auxin transporter. PIN6 is auxin-inducible
    and is expressed during multiple auxin-regulated developmental processes. Loss
    of pin6 function interfered with primary root growth and lateral root development.
    Misexpression of PIN6 affected auxin transport and interfered with auxin homeostasis
    in other growth processes such as shoot apical dominance, lateral root primordia
    development, adventitious root formation, root hair outgrowth and root waving.
    These changes in auxin-regulated growth correlated with a reduction in total auxin
    transport as well as with an altered activity of DR5-GUS auxin response reporter.
    Overall, the data indicate that PIN6 regulates auxin homeostasis during plant
    development.
article_number: e70069
article_processing_charge: No
author:
- first_name: Christopher
  full_name: Cazzonelli, Christopher
  last_name: Cazzonelli
- first_name: Marleen
  full_name: Vanstraelen, Marleen
  last_name: Vanstraelen
- first_name: Sibu
  full_name: Simon, Sibu
  id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
  last_name: Simon
  orcid: 0000-0002-1998-6741
- first_name: Kuide
  full_name: Yin, Kuide
  last_name: Yin
- first_name: Ashley
  full_name: Carron Arthur, Ashley
  last_name: Carron Arthur
- first_name: Nazia
  full_name: Nisar, Nazia
  last_name: Nisar
- first_name: Gauri
  full_name: Tarle, Gauri
  last_name: Tarle
- first_name: Abby
  full_name: Cuttriss, Abby
  last_name: Cuttriss
- first_name: Iain
  full_name: Searle, Iain
  last_name: Searle
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Ulrike
  full_name: Mathesius, Ulrike
  last_name: Mathesius
- first_name: Josette
  full_name: Masle, Josette
  last_name: Masle
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Barry
  full_name: Pogson, Barry
  last_name: Pogson
citation:
  ama: Cazzonelli C, Vanstraelen M, Simon S, et al. Role of the Arabidopsis PIN6 auxin
    transporter in auxin homeostasis and auxin-mediated development. <i>PLoS One</i>.
    2013;8(7). doi:<a href="https://doi.org/10.1371/journal.pone.0070069">10.1371/journal.pone.0070069</a>
  apa: Cazzonelli, C., Vanstraelen, M., Simon, S., Yin, K., Carron Arthur, A., Nisar,
    N., … Pogson, B. (2013). Role of the Arabidopsis PIN6 auxin transporter in auxin
    homeostasis and auxin-mediated development. <i>PLoS One</i>. Public Library of
    Science. <a href="https://doi.org/10.1371/journal.pone.0070069">https://doi.org/10.1371/journal.pone.0070069</a>
  chicago: Cazzonelli, Christopher, Marleen Vanstraelen, Sibu Simon, Kuide Yin, Ashley
    Carron Arthur, Nazia Nisar, Gauri Tarle, et al. “Role of the Arabidopsis PIN6
    Auxin Transporter in Auxin Homeostasis and Auxin-Mediated Development.” <i>PLoS
    One</i>. Public Library of Science, 2013. <a href="https://doi.org/10.1371/journal.pone.0070069">https://doi.org/10.1371/journal.pone.0070069</a>.
  ieee: C. Cazzonelli <i>et al.</i>, “Role of the Arabidopsis PIN6 auxin transporter
    in auxin homeostasis and auxin-mediated development,” <i>PLoS One</i>, vol. 8,
    no. 7. Public Library of Science, 2013.
  ista: Cazzonelli C, Vanstraelen M, Simon S, Yin K, Carron Arthur A, Nisar N, Tarle
    G, Cuttriss A, Searle I, Benková E, Mathesius U, Masle J, Friml J, Pogson B. 2013.
    Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated
    development. PLoS One. 8(7), e70069.
  mla: Cazzonelli, Christopher, et al. “Role of the Arabidopsis PIN6 Auxin Transporter
    in Auxin Homeostasis and Auxin-Mediated Development.” <i>PLoS One</i>, vol. 8,
    no. 7, e70069, Public Library of Science, 2013, doi:<a href="https://doi.org/10.1371/journal.pone.0070069">10.1371/journal.pone.0070069</a>.
  short: C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar,
    G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml,
    B. Pogson, PLoS One 8 (2013).
date_created: 2018-12-11T11:57:52Z
date_published: 2013-07-29T00:00:00Z
date_updated: 2025-09-29T14:11:25Z
day: '29'
ddc:
- '580'
- '570'
department:
- _id: JiFr
- _id: EvBe
doi: 10.1371/journal.pone.0070069
ec_funded: 1
external_id:
  isi:
  - '000323369700128'
file:
- access_level: open_access
  checksum: 3be71828b6c2ba9c90eb7056e3f7f57a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:34Z
  date_updated: 2020-07-14T12:45:41Z
  file_id: '5222'
  file_name: IST-2015-393-v1+1_journal.pone.0070069.pdf
  file_size: 9003465
  relation: main_file
file_date_updated: 2020-07-14T12:45:41Z
fulldoi: https://doi.org/10.1371/journal.pone.0070069
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 253FCA6A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '207362'
  name: Hormonal cross-talk in plant organogenesis
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '4431'
pubrep_id: '393'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated
  development
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2013'
...
---
_id: '2808'
abstract:
- lang: eng
  text: In order to establish a reference for analysis of the function of auxin and
    the auxin biosynthesis regulators SHORT INTERNODE/ STYLISH (SHI/STY) during Physcomitrella
    patens reproductive development, we have described male (antheridial) and female
    (archegonial) development in detail, including temporal and positional information
    of organ initiation. This has allowed us to define discrete stages of organ morphogenesis
    and to show that reproductive organ development in P. patens is highly organized
    and that organ phyllotaxis differs between vegetative and reproductive development.
    Using the PpSHI1 and PpSHI2 reporter and knockout lines, the auxin reporters GmGH3pro:GUS
    and PpPINApro:GFP-GUS, and the auxin-conjugating transgene PpSHI2pro:IAAL, we
    could show that the PpSHI genes, and by inference also auxin, play important roles
    for reproductive organ development in moss. The PpSHI genes are required for the
    apical opening of the reproductive organs, the final differentiation of the egg
    cell, and the progression of canal cells into a cell death program. The apical
    cells of the archegonium, the canal cells, and the egg cell are also sites of
    auxin responsiveness and are affected by reduced levels of active auxin, suggesting
    that auxin mediates PpSHI function in the reproductive organs.
article_processing_charge: No
author:
- first_name: Katarina
  full_name: Landberg, Katarina
  last_name: Landberg
- first_name: Eric
  full_name: Pederson, Eric
  last_name: Pederson
- first_name: Tom
  full_name: Viaene, Tom
  last_name: Viaene
- first_name: Behruz
  full_name: Bozorg, Behruz
  last_name: Bozorg
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Henrik
  full_name: Jönsson, Henrik
  last_name: Jönsson
- first_name: Mattias
  full_name: Thelander, Mattias
  last_name: Thelander
- first_name: Eva
  full_name: Sundberg, Eva
  last_name: Sundberg
citation:
  ama: Landberg K, Pederson E, Viaene T, et al. The moss physcomitrella patens reproductive
    organ development is highly organized, affected by the two SHI/STY genes and by
    the level of active auxin in the SHI/STY expression domain. <i>Plant Physiology</i>.
    2013;162(3):1406-1419. doi:<a href="https://doi.org/10.1104/pp.113.214023">10.1104/pp.113.214023</a>
  apa: Landberg, K., Pederson, E., Viaene, T., Bozorg, B., Friml, J., Jönsson, H.,
    … Sundberg, E. (2013). The moss physcomitrella patens reproductive organ development
    is highly organized, affected by the two SHI/STY genes and by the level of active
    auxin in the SHI/STY expression domain. <i>Plant Physiology</i>. American Society
    of Plant Biologists. <a href="https://doi.org/10.1104/pp.113.214023">https://doi.org/10.1104/pp.113.214023</a>
  chicago: Landberg, Katarina, Eric Pederson, Tom Viaene, Behruz Bozorg, Jiří Friml,
    Henrik Jönsson, Mattias Thelander, and Eva Sundberg. “The Moss Physcomitrella
    Patens Reproductive Organ Development Is Highly Organized, Affected by the Two
    SHI/STY Genes and by the Level of Active Auxin in the SHI/STY Expression Domain.”
    <i>Plant Physiology</i>. American Society of Plant Biologists, 2013. <a href="https://doi.org/10.1104/pp.113.214023">https://doi.org/10.1104/pp.113.214023</a>.
  ieee: K. Landberg <i>et al.</i>, “The moss physcomitrella patens reproductive organ
    development is highly organized, affected by the two SHI/STY genes and by the
    level of active auxin in the SHI/STY expression domain,” <i>Plant Physiology</i>,
    vol. 162, no. 3. American Society of Plant Biologists, pp. 1406–1419, 2013.
  ista: Landberg K, Pederson E, Viaene T, Bozorg B, Friml J, Jönsson H, Thelander
    M, Sundberg E. 2013. The moss physcomitrella patens reproductive organ development
    is highly organized, affected by the two SHI/STY genes and by the level of active
    auxin in the SHI/STY expression domain. Plant Physiology. 162(3), 1406–1419.
  mla: Landberg, Katarina, et al. “The Moss Physcomitrella Patens Reproductive Organ
    Development Is Highly Organized, Affected by the Two SHI/STY Genes and by the
    Level of Active Auxin in the SHI/STY Expression Domain.” <i>Plant Physiology</i>,
    vol. 162, no. 3, American Society of Plant Biologists, 2013, pp. 1406–19, doi:<a
    href="https://doi.org/10.1104/pp.113.214023">10.1104/pp.113.214023</a>.
  short: K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M.
    Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
date_created: 2018-12-11T11:59:42Z
date_published: 2013-07-03T00:00:00Z
date_updated: 2025-09-29T14:06:13Z
day: '03'
department:
- _id: JiFr
doi: 10.1104/pp.113.214023
external_id:
  isi:
  - '000321325700015'
  pmid:
  - '23669745'
fulldoi: https://doi.org/10.1104/pp.113.214023
intvolume: '       162'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707547/
month: '07'
oa: 1
oa_version: Submitted Version
page: 1406 - 1419
pmid: 1
publication: Plant Physiology
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '4079'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The moss physcomitrella patens reproductive organ development is highly organized,
  affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY
  expression domain
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 162
year: '2013'
...
---
_id: '2821'
abstract:
- lang: eng
  text: Many key aspects of plant development are regulated by the polarized transport
    of the phytohormone auxin. Cellular auxin efflux, the rate-limiting step in this
    process, has been shown to rely on the coordinated action of PIN-formed (PIN)
    and B-type ATP binding cassette (ABCB) carriers. Here, we report that polar auxin
    transport in the Arabidopsis thaliana root also requires the action of a Major
    Facilitator Superfamily (MFS) transporter, Zinc-Induced Facilitator-Like 1 (ZIFL1).
    Sequencing, promoter-reporter, and fluorescent protein fusion experiments indicate
    that the full-length ZIFL1.1 protein and a truncated splice isoform, ZIFL1.3,
    localize to the tonoplast of root cells and the plasma membrane of leaf stomatal
    guard cells, respectively. Using reverse genetics, we show that the ZIFL1.1 transporter
    regulates various root auxin-related processes, while the ZIFL1.3 isoform mediates
    drought tolerance by regulating stomatal closure. Auxin transport and immunolocalization
    assays demonstrate that ZIFL1.1 indirectly modulates cellular auxin efflux during
    shootward auxin transport at the root tip, likely by regulating plasma membrane
    PIN2 abundance. Finally, heterologous expression in yeast revealed that ZIFL1.1
    and ZIFL1.3 share H+-coupled K+ transport activity. Thus, by determining the subcellular
    and tissue distribution of two isoforms, alternative splicing dictates a dual
    function for the ZIFL1 transporter. We propose that this MFS carrier regulates
    stomatal movements and polar auxin transport by modulating potassium and proton
    fluxes in Arabidopsis cells.
article_processing_charge: No
author:
- first_name: Estelle
  full_name: Remy, Estelle
  last_name: Remy
- first_name: Tânia
  full_name: Cabrito, Tânia
  last_name: Cabrito
- first_name: Pawel
  full_name: Baster, Pawel
  id: 3028BD74-F248-11E8-B48F-1D18A9856A87
  last_name: Baster
- first_name: Rita
  full_name: Batista, Rita
  last_name: Batista
- first_name: Miguel
  full_name: Teixeira, Miguel
  last_name: Teixeira
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Isabel
  full_name: Sá Correia, Isabel
  last_name: Sá Correia
- first_name: Paula
  full_name: Duque, Paula
  last_name: Duque
citation:
  ama: Remy E, Cabrito T, Baster P, et al. A major facilitator superfamily transporter
    plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis.
    <i>Plant Cell</i>. 2013;25(3):901-926. doi:<a href="https://doi.org/10.1105/tpc.113.110353">10.1105/tpc.113.110353</a>
  apa: Remy, E., Cabrito, T., Baster, P., Batista, R., Teixeira, M., Friml, J., …
    Duque, P. (2013). A major facilitator superfamily transporter plays a dual role
    in polar auxin transport and drought stress tolerance in Arabidopsis. <i>Plant
    Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.113.110353">https://doi.org/10.1105/tpc.113.110353</a>
  chicago: Remy, Estelle, Tânia Cabrito, Pawel Baster, Rita Batista, Miguel Teixeira,
    Jiří Friml, Isabel Sá Correia, and Paula Duque. “A Major Facilitator Superfamily
    Transporter Plays a Dual Role in Polar Auxin Transport and Drought Stress Tolerance
    in Arabidopsis.” <i>Plant Cell</i>. American Society of Plant Biologists, 2013.
    <a href="https://doi.org/10.1105/tpc.113.110353">https://doi.org/10.1105/tpc.113.110353</a>.
  ieee: E. Remy <i>et al.</i>, “A major facilitator superfamily transporter plays
    a dual role in polar auxin transport and drought stress tolerance in Arabidopsis,”
    <i>Plant Cell</i>, vol. 25, no. 3. American Society of Plant Biologists, pp. 901–926,
    2013.
  ista: Remy E, Cabrito T, Baster P, Batista R, Teixeira M, Friml J, Sá Correia I,
    Duque P. 2013. A major facilitator superfamily transporter plays a dual role in
    polar auxin transport and drought stress tolerance in Arabidopsis. Plant Cell.
    25(3), 901–926.
  mla: Remy, Estelle, et al. “A Major Facilitator Superfamily Transporter Plays a
    Dual Role in Polar Auxin Transport and Drought Stress Tolerance in Arabidopsis.”
    <i>Plant Cell</i>, vol. 25, no. 3, American Society of Plant Biologists, 2013,
    pp. 901–26, doi:<a href="https://doi.org/10.1105/tpc.113.110353">10.1105/tpc.113.110353</a>.
  short: E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá
    Correia, P. Duque, Plant Cell 25 (2013) 901–926.
date_created: 2018-12-11T11:59:46Z
date_published: 2013-04-24T00:00:00Z
date_updated: 2025-09-29T13:57:58Z
day: '24'
department:
- _id: JiFr
doi: 10.1105/tpc.113.110353
external_id:
  isi:
  - '000318157100012'
  pmid:
  - '23524662'
fulldoi: https://doi.org/10.1105/tpc.113.110353
intvolume: '        25'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634696/
month: '04'
oa: 1
oa_version: Submitted Version
page: 901 - 926
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3980'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A major facilitator superfamily transporter plays a dual role in polar auxin
  transport and drought stress tolerance in Arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 25
year: '2013'
...
---
_id: '2827'
abstract:
- lang: eng
  text: Removal of cargos from the cell surface via endocytosis is an efficient mechanism
    to regulate activities of plasma membrane (PM)-resident proteins, such as receptors
    or transporters. Salicylic acid (SA) is an important plant hormone that is traditionally
    associated with pathogen defense. Here, we describe an unanticipated effect of
    SA on subcellular endocytic cycling of proteins. Both exogenous treatments and
    endogenously enhanced SA levels repressed endocytosis of different PM proteins.
    The SA effect on endocytosis did not involve transcription or known components
    of the SA signaling pathway for transcriptional regulation. SA likely targets
    an endocytic mechanism that involves the coat protein clathrin, because SA interfered
    with the clathrin incidence at the PM and clathrin-deficient mutants were less
    sensitive to the impact of SA on the auxin distribution and root bending during
    the gravitropic response. By contrast, SA did not affect the ligand-induced endocytosis
    of the FLAGELLIN SENSING2 (FLS2) receptor during pathogen responses. Our data
    suggest that the established SA impact on transcription in plant immunity and
    the nontranscriptional effect of SA on clathrin-mediated endocytosis are independent
    mechanisms by which SA regulates distinct aspects of plant physiology.
article_processing_charge: No
author:
- first_name: Yunlong
  full_name: Du, Yunlong
  last_name: Du
- first_name: Ricardo
  full_name: Tejos, Ricardo
  last_name: Tejos
- first_name: Martina
  full_name: Beck, Martina
  last_name: Beck
- first_name: Ellie
  full_name: Himschoot, Ellie
  last_name: Himschoot
- first_name: Hongjiang
  full_name: Li, Hongjiang
  id: 33CA54A6-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0001-5039-9660
- first_name: Silke
  full_name: Robatzek, Silke
  last_name: Robatzek
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Du Y, Tejos R, Beck M, et al. Salicylic acid interferes with clathrin-mediated
    endocytic protein trafficking. <i>PNAS</i>. 2013;110(19):7946-7951. doi:<a href="https://doi.org/10.1073/pnas.1220205110">10.1073/pnas.1220205110</a>
  apa: Du, Y., Tejos, R., Beck, M., Himschoot, E., Li, H., Robatzek, S., … Friml,
    J. (2013). Salicylic acid interferes with clathrin-mediated endocytic protein
    trafficking. <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1220205110">https://doi.org/10.1073/pnas.1220205110</a>
  chicago: Du, Yunlong, Ricardo Tejos, Martina Beck, Ellie Himschoot, Hongjiang Li,
    Silke Robatzek, Steffen Vanneste, and Jiří Friml. “Salicylic Acid Interferes with
    Clathrin-Mediated Endocytic Protein Trafficking.” <i>PNAS</i>. National Academy
    of Sciences, 2013. <a href="https://doi.org/10.1073/pnas.1220205110">https://doi.org/10.1073/pnas.1220205110</a>.
  ieee: Y. Du <i>et al.</i>, “Salicylic acid interferes with clathrin-mediated endocytic
    protein trafficking,” <i>PNAS</i>, vol. 110, no. 19. National Academy of Sciences,
    pp. 7946–7951, 2013.
  ista: Du Y, Tejos R, Beck M, Himschoot E, Li H, Robatzek S, Vanneste S, Friml J.
    2013. Salicylic acid interferes with clathrin-mediated endocytic protein trafficking.
    PNAS. 110(19), 7946–7951.
  mla: Du, Yunlong, et al. “Salicylic Acid Interferes with Clathrin-Mediated Endocytic
    Protein Trafficking.” <i>PNAS</i>, vol. 110, no. 19, National Academy of Sciences,
    2013, pp. 7946–51, doi:<a href="https://doi.org/10.1073/pnas.1220205110">10.1073/pnas.1220205110</a>.
  short: Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste,
    J. Friml, PNAS 110 (2013) 7946–7951.
corr_author: '1'
date_created: 2018-12-11T11:59:48Z
date_published: 2013-05-07T00:00:00Z
date_updated: 2025-09-29T13:52:38Z
day: '07'
department:
- _id: JiFr
doi: 10.1073/pnas.1220205110
external_id:
  isi:
  - '000319327700089'
  pmid:
  - '23613581'
fulldoi: https://doi.org/10.1073/pnas.1220205110
intvolume: '       110'
isi: 1
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651428/
month: '05'
oa: 1
oa_version: Submitted Version
page: 7946 - 7951
pmid: 1
project:
- _id: 2574781E-B435-11E9-9278-68D0E5697425
  name: Koerber Prize
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3972'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Salicylic acid interferes with clathrin-mediated endocytic protein trafficking
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2013'
...
---
_id: '2832'
abstract:
- lang: eng
  text: PIN-FORMED (PIN) proteins localize asymmetrically at the plasma membrane and
    mediate intercellular polar transport of the plant hormone auxin that is crucial
    for a multitude of developmental processes in plants. PIN localization is under
    extensive control by environmental or developmental cues, but mechanisms regulating
    PIN localization are not fully understood. Here we show that early endosomal components
    ARF GEF BEN1 and newly identified Sec1/Munc18 family protein BEN2 are involved
    in distinct steps of early endosomal trafficking. BEN1 and BEN2 are collectively
    required for polar PIN localization, for their dynamic repolarization, and consequently
    for auxin activity gradient formation and auxin-related developmental processes
    including embryonic patterning, organogenesis, and vasculature venation patterning.
    These results show that early endosomal trafficking is crucial for cell polarity
    and auxin-dependent regulation of plant architecture.
article_number: e1003540
article_processing_charge: No
author:
- first_name: Hirokazu
  full_name: Tanaka, Hirokazu
  last_name: Tanaka
- first_name: Saeko
  full_name: Kitakura, Saeko
  last_name: Kitakura
- first_name: Hana
  full_name: Rakusová, Hana
  last_name: Rakusová
- first_name: Tomohiro
  full_name: Uemura, Tomohiro
  last_name: Uemura
- first_name: Mugurel
  full_name: Feraru, Mugurel
  last_name: Feraru
- first_name: Riet
  full_name: De Rycke, Riet
  last_name: De Rycke
- first_name: Stéphanie
  full_name: Robert, Stéphanie
  last_name: Robert
- first_name: Tatsuo
  full_name: Kakimoto, Tatsuo
  last_name: Kakimoto
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Tanaka H, Kitakura S, Rakusová H, et al. Cell polarity and patterning by PIN
    trafficking through early endosomal compartments in arabidopsis thaliana. <i>PLoS
    Genetics</i>. 2013;9(5). doi:<a href="https://doi.org/10.1371/journal.pgen.1003540">10.1371/journal.pgen.1003540</a>
  apa: Tanaka, H., Kitakura, S., Rakusová, H., Uemura, T., Feraru, M., De Rycke, R.,
    … Friml, J. (2013). Cell polarity and patterning by PIN trafficking through early
    endosomal compartments in arabidopsis thaliana. <i>PLoS Genetics</i>. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.pgen.1003540">https://doi.org/10.1371/journal.pgen.1003540</a>
  chicago: Tanaka, Hirokazu, Saeko Kitakura, Hana Rakusová, Tomohiro Uemura, Mugurel
    Feraru, Riet De Rycke, Stéphanie Robert, Tatsuo Kakimoto, and Jiří Friml. “Cell
    Polarity and Patterning by PIN Trafficking through Early Endosomal Compartments
    in Arabidopsis Thaliana.” <i>PLoS Genetics</i>. Public Library of Science, 2013.
    <a href="https://doi.org/10.1371/journal.pgen.1003540">https://doi.org/10.1371/journal.pgen.1003540</a>.
  ieee: H. Tanaka <i>et al.</i>, “Cell polarity and patterning by PIN trafficking
    through early endosomal compartments in arabidopsis thaliana,” <i>PLoS Genetics</i>,
    vol. 9, no. 5. Public Library of Science, 2013.
  ista: Tanaka H, Kitakura S, Rakusová H, Uemura T, Feraru M, De Rycke R, Robert S,
    Kakimoto T, Friml J. 2013. Cell polarity and patterning by PIN trafficking through
    early endosomal compartments in arabidopsis thaliana. PLoS Genetics. 9(5), e1003540.
  mla: Tanaka, Hirokazu, et al. “Cell Polarity and Patterning by PIN Trafficking through
    Early Endosomal Compartments in Arabidopsis Thaliana.” <i>PLoS Genetics</i>, vol.
    9, no. 5, e1003540, Public Library of Science, 2013, doi:<a href="https://doi.org/10.1371/journal.pgen.1003540">10.1371/journal.pgen.1003540</a>.
  short: H. Tanaka, S. Kitakura, H. Rakusová, T. Uemura, M. Feraru, R. De Rycke, S.
    Robert, T. Kakimoto, J. Friml, PLoS Genetics 9 (2013).
corr_author: '1'
date_created: 2018-12-11T11:59:50Z
date_published: 2013-05-05T00:00:00Z
date_updated: 2025-09-29T13:50:00Z
day: '05'
ddc:
- '570'
department:
- _id: JiFr
doi: 10.1371/journal.pgen.1003540
ec_funded: 1
external_id:
  isi:
  - '000320030000043'
file:
- access_level: open_access
  checksum: 050237d6c53e8d1601b26808ee1dd6d8
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:39Z
  date_updated: 2020-07-14T12:45:50Z
  file_id: '4957'
  file_name: IST-2016-411-v1+1_journal.pgen.1003540.pdf
  file_size: 3813091
  relation: main_file
file_date_updated: 2020-07-14T12:45:50Z
fulldoi: https://doi.org/10.1371/journal.pgen.1003540
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: PLoS Genetics
publication_status: published
publisher: Public Library of Science
publist_id: '3967'
pubrep_id: '411'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cell polarity and patterning by PIN trafficking through early endosomal compartments
  in arabidopsis thaliana
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9
year: '2013'
...
---
_id: '2835'
abstract:
- lang: eng
  text: The phytohormone auxin regulates virtually every aspect of plant development.
    To identify new genes involved in auxin activity, a genetic screen was performed
    for Arabidopsis (Arabidopsis thaliana) mutants with altered expression of the
    auxin-responsive reporter DR5rev:GFP. One of the mutants recovered in the screen,
    designated as weak auxin response3 (wxr3), exhibits much lower DR5rev:GFP expression
    when treated with the synthetic auxin 2,4-dichlorophenoxyacetic acid and displays
    severe defects in root development. The wxr3 mutant decreases polar auxin transport
    and results in a disruption of the asymmetric auxin distribution. The levels of
    the auxin transporters AUXIN1 and PIN-FORMED are dramatically reduced in the wxr3
    root tip. Molecular analyses demonstrate that WXR3 is ROOT ULTRAVIOLET B-SENSITIVE1
    (RUS1), a member of the conserved Domain of Unknown Function647 protein family
    found in diverse eukaryotic organisms. Our data suggest that RUS1/WXR3 plays an
    essential role in the regulation of polar auxin transport by maintaining the proper
    level of auxin transporters on the plasma membrane.
article_processing_charge: No
author:
- first_name: Hong
  full_name: Yu, Hong
  last_name: Yu
- first_name: Michael
  full_name: Karampelias, Michael
  last_name: Karampelias
- first_name: Stéphanie
  full_name: Robert, Stéphanie
  last_name: Robert
- first_name: Wendy
  full_name: Peer, Wendy
  last_name: Peer
- first_name: Ranjan
  full_name: Swarup, Ranjan
  last_name: Swarup
- first_name: Songqing
  full_name: Ye, Songqing
  last_name: Ye
- first_name: Lei
  full_name: Ge, Lei
  last_name: Ge
- first_name: Jerry
  full_name: Cohen, Jerry
  last_name: Cohen
- first_name: Angus
  full_name: Murphy, Angus
  last_name: Murphy
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Mark
  full_name: Estelle, Mark
  last_name: Estelle
citation:
  ama: Yu H, Karampelias M, Robert S, et al. Root ultraviolet b-sensitive1/weak auxin
    response3 is essential for polar auxin transport in arabidopsis. <i>Plant Physiology</i>.
    2013;162(2):965-976. doi:<a href="https://doi.org/10.1104/pp.113.217018">10.1104/pp.113.217018</a>
  apa: Yu, H., Karampelias, M., Robert, S., Peer, W., Swarup, R., Ye, S., … Estelle,
    M. (2013). Root ultraviolet b-sensitive1/weak auxin response3 is essential for
    polar auxin transport in arabidopsis. <i>Plant Physiology</i>. American Society
    of Plant Biologists. <a href="https://doi.org/10.1104/pp.113.217018">https://doi.org/10.1104/pp.113.217018</a>
  chicago: Yu, Hong, Michael Karampelias, Stéphanie Robert, Wendy Peer, Ranjan Swarup,
    Songqing Ye, Lei Ge, et al. “Root Ultraviolet B-Sensitive1/Weak Auxin Response3
    Is Essential for Polar Auxin Transport in Arabidopsis.” <i>Plant Physiology</i>.
    American Society of Plant Biologists, 2013. <a href="https://doi.org/10.1104/pp.113.217018">https://doi.org/10.1104/pp.113.217018</a>.
  ieee: H. Yu <i>et al.</i>, “Root ultraviolet b-sensitive1/weak auxin response3 is
    essential for polar auxin transport in arabidopsis,” <i>Plant Physiology</i>,
    vol. 162, no. 2. American Society of Plant Biologists, pp. 965–976, 2013.
  ista: Yu H, Karampelias M, Robert S, Peer W, Swarup R, Ye S, Ge L, Cohen J, Murphy
    A, Friml J, Estelle M. 2013. Root ultraviolet b-sensitive1/weak auxin response3
    is essential for polar auxin transport in arabidopsis. Plant Physiology. 162(2),
    965–976.
  mla: Yu, Hong, et al. “Root Ultraviolet B-Sensitive1/Weak Auxin Response3 Is Essential
    for Polar Auxin Transport in Arabidopsis.” <i>Plant Physiology</i>, vol. 162,
    no. 2, American Society of Plant Biologists, 2013, pp. 965–76, doi:<a href="https://doi.org/10.1104/pp.113.217018">10.1104/pp.113.217018</a>.
  short: H. Yu, M. Karampelias, S. Robert, W. Peer, R. Swarup, S. Ye, L. Ge, J. Cohen,
    A. Murphy, J. Friml, M. Estelle, Plant Physiology 162 (2013) 965–976.
date_created: 2018-12-11T11:59:51Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2025-09-29T13:48:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1104/pp.113.217018
external_id:
  isi:
  - '000319819900034'
  pmid:
  - '23580592'
fulldoi: https://doi.org/10.1104/pp.113.217018
intvolume: '       162'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668084/
month: '06'
oa: 1
oa_version: Submitted Version
page: 965 - 976
pmid: 1
publication: Plant Physiology
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3964'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin
  transport in arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 162
year: '2013'
...
---
_id: '2844'
abstract:
- lang: eng
  text: As soon as a seed germinates, plant growth relates to gravity to ensure that
    the root penetrates the soil and the shoot expands aerially. Whereas mechanisms
    of positive and negative orthogravitropism of primary roots and shoots are relatively
    well understood [1-3], lateral organs often show more complex growth behavior
    [4]. Lateral roots (LRs) seemingly suppress positive gravitropic growth and show
    a defined gravitropic set-point angle (GSA) that allows radial expansion of the
    root system (plagiotropism) [3, 4]. Despite its eminent importance for root architecture,
    it so far remains completely unknown how lateral organs partially suppress positive
    orthogravitropism. Here we show that the phytohormone auxin steers GSA formation
    and limits positive orthogravitropism in LR. Low and high auxin levels/signaling
    lead to radial or axial root systems, respectively. At a cellular level, it is
    the auxin transport-dependent regulation of asymmetric growth in the elongation
    zone that determines GSA. Our data suggest that strong repression of PIN4/PIN7
    and transient PIN3 expression limit auxin redistribution in young LR columella
    cells. We conclude that PIN activity, by temporally limiting the asymmetric auxin
    fluxes in the tip of LRs, induces transient, differential growth responses in
    the elongation zone and, consequently, controls root architecture.
article_processing_charge: No
author:
- first_name: Michel
  full_name: Rosquete, Michel
  last_name: Rosquete
- first_name: Daniel
  full_name: Von Wangenheim, Daniel
  id: 49E91952-F248-11E8-B48F-1D18A9856A87
  last_name: Von Wangenheim
  orcid: 0000-0002-6862-1247
- first_name: Peter
  full_name: Marhavy, Peter
  id: 3F45B078-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavy
  orcid: 0000-0001-5227-5741
- first_name: Elke
  full_name: Barbez, Elke
  last_name: Barbez
- first_name: Ernst
  full_name: Stelzer, Ernst
  last_name: Stelzer
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Alexis
  full_name: Maizel, Alexis
  last_name: Maizel
- first_name: Jürgen
  full_name: Kleine Vehn, Jürgen
  last_name: Kleine Vehn
citation:
  ama: Rosquete M, von Wangenheim D, Marhavý P, et al. An auxin transport mechanism
    restricts positive orthogravitropism in lateral roots. <i>Current Biology</i>.
    2013;23(9):817-822. doi:<a href="https://doi.org/10.1016/j.cub.2013.03.064">10.1016/j.cub.2013.03.064</a>
  apa: Rosquete, M., von Wangenheim, D., Marhavý, P., Barbez, E., Stelzer, E., Benková,
    E., … Kleine Vehn, J. (2013). An auxin transport mechanism restricts positive
    orthogravitropism in lateral roots. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2013.03.064">https://doi.org/10.1016/j.cub.2013.03.064</a>
  chicago: Rosquete, Michel, Daniel von Wangenheim, Peter Marhavý, Elke Barbez, Ernst
    Stelzer, Eva Benková, Alexis Maizel, and Jürgen Kleine Vehn. “An Auxin Transport
    Mechanism Restricts Positive Orthogravitropism in Lateral Roots.” <i>Current Biology</i>.
    Cell Press, 2013. <a href="https://doi.org/10.1016/j.cub.2013.03.064">https://doi.org/10.1016/j.cub.2013.03.064</a>.
  ieee: M. Rosquete <i>et al.</i>, “An auxin transport mechanism restricts positive
    orthogravitropism in lateral roots,” <i>Current Biology</i>, vol. 23, no. 9. Cell
    Press, pp. 817–822, 2013.
  ista: Rosquete M, von Wangenheim D, Marhavý P, Barbez E, Stelzer E, Benková E, Maizel
    A, Kleine Vehn J. 2013. An auxin transport mechanism restricts positive orthogravitropism
    in lateral roots. Current Biology. 23(9), 817–822.
  mla: Rosquete, Michel, et al. “An Auxin Transport Mechanism Restricts Positive Orthogravitropism
    in Lateral Roots.” <i>Current Biology</i>, vol. 23, no. 9, Cell Press, 2013, pp.
    817–22, doi:<a href="https://doi.org/10.1016/j.cub.2013.03.064">10.1016/j.cub.2013.03.064</a>.
  short: M. Rosquete, D. von Wangenheim, P. Marhavý, E. Barbez, E. Stelzer, E. Benková,
    A. Maizel, J. Kleine Vehn, Current Biology 23 (2013) 817–822.
date_created: 2018-12-11T11:59:53Z
date_published: 2013-05-06T00:00:00Z
date_updated: 2025-09-29T13:43:30Z
day: '06'
department:
- _id: JiFr
- _id: EvBe
doi: 10.1016/j.cub.2013.03.064
ec_funded: 1
external_id:
  isi:
  - '000318750900035'
fulldoi: https://doi.org/10.1016/j.cub.2013.03.064
intvolume: '        23'
isi: 1
issue: '9'
language:
- iso: eng
month: '05'
oa_version: None
page: 817 - 822
project:
- _id: 253FCA6A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '207362'
  name: Hormonal cross-talk in plant organogenesis
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '3950'
quality_controlled: '1'
scopus_import: '1'
status: public
title: An auxin transport mechanism restricts positive orthogravitropism in lateral
  roots
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 23
year: '2013'
...
---
_id: '2882'
abstract:
- lang: eng
  text: Gravitropic bending of plant organs is mediated by an asymmetric signaling
    of the plant hormone auxin between the upper and lower side of the respective
    organ. Here, we show that also another plant hormone, gibberellic acid (GA), shows
    asymmetric action during gravitropic responses. Immunodetection using an antibody
    against GA and monitoring GA signaling output by downstream degradation of DELLA
    proteins revealed an asymmetric GA distribution and response with the maximum
    at the lower side of gravistimulated roots. Genetic or pharmacological manipulation
    of GA levels or response affects gravity-mediated auxin redistribution and root
    bending response. The higher GA levels at the lower side of the root correlate
    with increased amounts of PIN-FORMED2 (PIN2) auxin transporter at the plasma membrane.
    The observed increase in PIN2 stability is caused by a specific GA effect on trafficking
    of PIN proteins to lytic vacuoles that presumably occurs downstream of brefeldin
    A-sensitive endosomes. Our results suggest that asymmetric auxin distribution
    instructive for gravity-induced differential growth is consolidated by the asymmetric
    action of GA that stabilizes the PIN-dependent auxin stream along the lower side
    of gravistimulated roots.
article_processing_charge: No
author:
- first_name: Christian
  full_name: Löfke, Christian
  last_name: Löfke
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Ingo
  full_name: Heilmann, Ingo
  last_name: Heilmann
- first_name: Marc
  full_name: Van Montagu, Marc
  last_name: Van Montagu
- first_name: Thomas
  full_name: Teichmann, Thomas
  last_name: Teichmann
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Löfke C, Zwiewka M, Heilmann I, Van Montagu M, Teichmann T, Friml J. Asymmetric
    gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters
    during root gravitropism. <i>PNAS</i>. 2013;110(9):3627-3632. doi:<a href="https://doi.org/10.1073/pnas.1300107110">10.1073/pnas.1300107110</a>
  apa: Löfke, C., Zwiewka, M., Heilmann, I., Van Montagu, M., Teichmann, T., &#38;
    Friml, J. (2013). Asymmetric gibberellin signaling regulates vacuolar trafficking
    of PIN auxin transporters during root gravitropism. <i>PNAS</i>. National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.1300107110">https://doi.org/10.1073/pnas.1300107110</a>
  chicago: Löfke, Christian, Marta Zwiewka, Ingo Heilmann, Marc Van Montagu, Thomas
    Teichmann, and Jiří Friml. “Asymmetric Gibberellin Signaling Regulates Vacuolar
    Trafficking of PIN Auxin Transporters during Root Gravitropism.” <i>PNAS</i>.
    National Academy of Sciences, 2013. <a href="https://doi.org/10.1073/pnas.1300107110">https://doi.org/10.1073/pnas.1300107110</a>.
  ieee: C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, and J. Friml,
    “Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin
    transporters during root gravitropism,” <i>PNAS</i>, vol. 110, no. 9. National
    Academy of Sciences, pp. 3627–3632, 2013.
  ista: Löfke C, Zwiewka M, Heilmann I, Van Montagu M, Teichmann T, Friml J. 2013.
    Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters
    during root gravitropism. PNAS. 110(9), 3627–3632.
  mla: Löfke, Christian, et al. “Asymmetric Gibberellin Signaling Regulates Vacuolar
    Trafficking of PIN Auxin Transporters during Root Gravitropism.” <i>PNAS</i>,
    vol. 110, no. 9, National Academy of Sciences, 2013, pp. 3627–32, doi:<a href="https://doi.org/10.1073/pnas.1300107110">10.1073/pnas.1300107110</a>.
  short: C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, J. Friml,
    PNAS 110 (2013) 3627–3632.
date_created: 2018-12-11T12:00:07Z
date_published: 2013-02-26T00:00:00Z
date_updated: 2025-09-29T13:34:38Z
day: '26'
department:
- _id: JiFr
doi: 10.1073/pnas.1300107110
external_id:
  isi:
  - '000315841900083'
  pmid:
  - '23391733'
fulldoi: https://doi.org/10.1073/pnas.1300107110
intvolume: '       110'
isi: 1
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3587205/
month: '02'
oa: 1
oa_version: Submitted Version
page: 3627 - 3632
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3879'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin
  transporters during root gravitropism
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2013'
...
---
_id: '2883'
abstract:
- lang: eng
  text: Plant architecture is influenced by the polar, cell-to-cell transport of auxin
    that is primarily provided and regulated by plasma membrane efflux catalysts of
    the PIN-FORMED and B family of ABC transporter (ABCB) classes. The latter were
    shown to require the functionality of the FK506 binding protein42 TWISTED DWARF1
    (TWD1), although underlying mechanisms are unclear. By genetic manipulation of
    TWD1 expression, we show here that TWD1 affects shootward root auxin reflux and,
    thus, downstream developmental traits, such as epidermal twisting and gravitropism
    of the root. Using immunological assays, we demonstrate a predominant lateral,
    mainly outward-facing, plasma membrane location for TWD1 in the root epidermis
    characterized by the lateral marker ABC transporter G36/PLEIOTROPIC DRUG-RESISTANCE8/PENETRATION3.
    At these epidermal plasma membrane domains, TWD1 colocalizes with nonpolar ABCB1.
    In planta bioluminescence resonance energy transfer analysis was used to verify
    specific ABC transporter B1 (ABCB1)-TWD1 interaction. Our data support a model
    in which TWD1 promotes lateral ABCB-mediated auxin efflux via protein-protein
    interaction at the plasma membrane, minimizing reflux from the root apoplast into
    the cytoplasm.
acknowledgement: We would thank Vincent Vincenzetti and Laurence Charrier for excellent
  technical assistance, A. von Arnim for the donation of BRET vectors, E. Spalding
  for TWD1-CFP, TWD1-CFP/29-1-GFP/ER-YFP, and ABCB4-GFP lines, M. Palmgren for discussion
  and support, and E. Martinoia for TT12 cDNA, support, and mentorship. Imaging data
  were partially collected at the Center for Advanced Bioimaging, University of Copenhagen,
  Denmark. This work was supported by grants from the Novartis Foundation (to M.G.),
  from the Danish Research School for Biotechnology (to M.G. and A.S.), from the Forschungskredit
  of the University of Zurich (to A.B.), from the Pool de Recherche of the University
  of Fribourg (to M.G.), and from the Swiss National Funds (to M.G.). M.G. dedicates
  this work to his father, who passed away during the resubmission process.
article_processing_charge: No
author:
- first_name: Bangjun
  full_name: Wang, Bangjun
  last_name: Wang
- first_name: Aurélien
  full_name: Bailly, Aurélien
  last_name: Bailly
- first_name: Marta
  full_name: Zwiewk, Marta
  last_name: Zwiewk
- first_name: Sina
  full_name: Henrichs, Sina
  last_name: Henrichs
- first_name: Elisa
  full_name: Azzarello, Elisa
  last_name: Azzarello
- first_name: Stefano
  full_name: Mancuso, Stefano
  last_name: Mancuso
- first_name: Masayoshi
  full_name: Maeshima, Masayoshi
  last_name: Maeshima
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Alexander
  full_name: Schulz, Alexander
  last_name: Schulz
- first_name: Markus
  full_name: Geisler, Markus
  last_name: Geisler
citation:
  ama: Wang B, Bailly A, Zwiewk M, et al. Arabidopsis TWISTED DWARF1 functionally
    interacts with auxin exporter ABCB1 on the root plasma membrane. <i>Plant Cell</i>.
    2013;25(1):202-214. doi:<a href="https://doi.org/10.1105/tpc.112.105999">10.1105/tpc.112.105999</a>
  apa: Wang, B., Bailly, A., Zwiewk, M., Henrichs, S., Azzarello, E., Mancuso, S.,
    … Geisler, M. (2013). Arabidopsis TWISTED DWARF1 functionally interacts with auxin
    exporter ABCB1 on the root plasma membrane. <i>Plant Cell</i>. American Society
    of Plant Biologists. <a href="https://doi.org/10.1105/tpc.112.105999">https://doi.org/10.1105/tpc.112.105999</a>
  chicago: Wang, Bangjun, Aurélien Bailly, Marta Zwiewk, Sina Henrichs, Elisa Azzarello,
    Stefano Mancuso, Masayoshi Maeshima, Jiří Friml, Alexander Schulz, and Markus
    Geisler. “Arabidopsis TWISTED DWARF1 Functionally Interacts with Auxin Exporter
    ABCB1 on the Root Plasma Membrane.” <i>Plant Cell</i>. American Society of Plant
    Biologists, 2013. <a href="https://doi.org/10.1105/tpc.112.105999">https://doi.org/10.1105/tpc.112.105999</a>.
  ieee: B. Wang <i>et al.</i>, “Arabidopsis TWISTED DWARF1 functionally interacts
    with auxin exporter ABCB1 on the root plasma membrane,” <i>Plant Cell</i>, vol.
    25, no. 1. American Society of Plant Biologists, pp. 202–214, 2013.
  ista: Wang B, Bailly A, Zwiewk M, Henrichs S, Azzarello E, Mancuso S, Maeshima M,
    Friml J, Schulz A, Geisler M. 2013. Arabidopsis TWISTED DWARF1 functionally interacts
    with auxin exporter ABCB1 on the root plasma membrane. Plant Cell. 25(1), 202–214.
  mla: Wang, Bangjun, et al. “Arabidopsis TWISTED DWARF1 Functionally Interacts with
    Auxin Exporter ABCB1 on the Root Plasma Membrane.” <i>Plant Cell</i>, vol. 25,
    no. 1, American Society of Plant Biologists, 2013, pp. 202–14, doi:<a href="https://doi.org/10.1105/tpc.112.105999">10.1105/tpc.112.105999</a>.
  short: B. Wang, A. Bailly, M. Zwiewk, S. Henrichs, E. Azzarello, S. Mancuso, M.
    Maeshima, J. Friml, A. Schulz, M. Geisler, Plant Cell 25 (2013) 202–214.
date_created: 2018-12-11T12:00:08Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2025-09-29T13:34:07Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.112.105999
external_id:
  isi:
  - '000315572400017'
  pmid:
  - '23321285'
fulldoi: https://doi.org/10.1105/tpc.112.105999
intvolume: '        25'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584535/
month: '01'
oa: 1
oa_version: Submitted Version
page: 202 - 214
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3878'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis TWISTED DWARF1 functionally interacts with auxin exporter ABCB1
  on the root plasma membrane
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 25
year: '2013'
...
---
_id: '2919'
abstract:
- lang: eng
  text: The distribution of the phytohormone auxin regulates many aspects of plant
    development including growth response to gravity. Gravitropic root curvature involves
    coordinated and asymmetric cell elongation between the lower and upper side of
    the root, mediated by differential cellular auxin levels. The asymmetry in the
    auxin distribution is established and maintained by a spatio-temporal regulation
    of the PIN-FORMED (PIN) auxin transporter activity. We provide novel insights
    into the complex regulation of PIN abundance and activity during root gravitropism.
    We show that PIN2 turnover is differentially regulated on the upper and lower
    side of gravistimulated roots by distinct but partially overlapping auxin feedback
    mechanisms. In addition to regulating transcription and clathrin-mediated internalization,
    auxin also controls PIN abundance at the plasma membrane by promoting their vacuolar
    targeting and degradation. This effect of elevated auxin levels requires the activity
    of SKP-Cullin-F-box TIR1/AFB (SCF TIR1/AFB)-dependent pathway. Importantly, also
    suboptimal auxin levels mediate PIN degradation utilizing the same signalling
    pathway. These feedback mechanisms are functionally important during gravitropic
    response and ensure fine-tuning of auxin fluxes for maintaining as well as terminating
    asymmetric growth.
article_processing_charge: No
author:
- first_name: Pawel
  full_name: Baster, Pawel
  id: 3028BD74-F248-11E8-B48F-1D18A9856A87
  last_name: Baster
- first_name: Stéphanie
  full_name: Robert, Stéphanie
  last_name: Robert
- first_name: Jürgen
  full_name: Kleine Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Urszula
  full_name: Kania, Urszula
  id: 4AE5C486-F248-11E8-B48F-1D18A9856A87
  last_name: Kania
- first_name: Wim
  full_name: Grunewald, Wim
  last_name: Grunewald
- first_name: Bert
  full_name: De Rybel, Bert
  last_name: De Rybel
- first_name: Tom
  full_name: Beeckman, Tom
  last_name: Beeckman
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Baster P, Robert S, Kleine Vehn J, et al. SCF^TIR1 AFB-auxin signalling regulates
    PIN vacuolar trafficking and auxin fluxes during root gravitropism. <i>EMBO Journal</i>.
    2013;32(2):260-274. doi:<a href="https://doi.org/10.1038/emboj.2012.310">10.1038/emboj.2012.310</a>
  apa: Baster, P., Robert, S., Kleine Vehn, J., Vanneste, S., Kania, U., Grunewald,
    W., … Friml, J. (2013). SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking
    and auxin fluxes during root gravitropism. <i>EMBO Journal</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.1038/emboj.2012.310">https://doi.org/10.1038/emboj.2012.310</a>
  chicago: Baster, Pawel, Stéphanie Robert, Jürgen Kleine Vehn, Steffen Vanneste,
    Urszula Kania, Wim Grunewald, Bert De Rybel, Tom Beeckman, and Jiří Friml. “SCF^TIR1
    AFB-Auxin Signalling Regulates PIN Vacuolar Trafficking and Auxin Fluxes during
    Root Gravitropism.” <i>EMBO Journal</i>. Wiley-Blackwell, 2013. <a href="https://doi.org/10.1038/emboj.2012.310">https://doi.org/10.1038/emboj.2012.310</a>.
  ieee: P. Baster <i>et al.</i>, “SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar
    trafficking and auxin fluxes during root gravitropism,” <i>EMBO Journal</i>, vol.
    32, no. 2. Wiley-Blackwell, pp. 260–274, 2013.
  ista: Baster P, Robert S, Kleine Vehn J, Vanneste S, Kania U, Grunewald W, De Rybel
    B, Beeckman T, Friml J. 2013. SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar
    trafficking and auxin fluxes during root gravitropism. EMBO Journal. 32(2), 260–274.
  mla: Baster, Pawel, et al. “SCF^TIR1 AFB-Auxin Signalling Regulates PIN Vacuolar
    Trafficking and Auxin Fluxes during Root Gravitropism.” <i>EMBO Journal</i>, vol.
    32, no. 2, Wiley-Blackwell, 2013, pp. 260–74, doi:<a href="https://doi.org/10.1038/emboj.2012.310">10.1038/emboj.2012.310</a>.
  short: P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald,
    B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
corr_author: '1'
date_created: 2018-12-11T12:00:20Z
date_published: 2013-01-23T00:00:00Z
date_updated: 2025-09-29T13:28:19Z
day: '23'
department:
- _id: JiFr
doi: 10.1038/emboj.2012.310
external_id:
  isi:
  - '000316464500009'
  pmid:
  - '23211744'
fulldoi: https://doi.org/10.1038/emboj.2012.310
intvolume: '        32'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3553380/
month: '01'
oa: 1
oa_version: Submitted Version
page: 260 - 274
pmid: 1
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3818'
quality_controlled: '1'
scopus_import: '1'
status: public
title: SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking and auxin
  fluxes during root gravitropism
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 32
year: '2013'
...
---
_id: '507'
abstract:
- lang: eng
  text: Fertilization in flowering plants requires the temporal and spatial coordination
    of many developmental processes, including pollen production, anther dehiscence,
    ovule production, and pollen tube elongation. However, it remains elusive as to
    how this coordination occurs during reproduction. Here, we present evidence that
    endocytosis, involving heterotetrameric adaptor protein complex 2 (AP-2), plays
    a crucial role in fertilization. An Arabidopsis thaliana mutant ap2m displays
    multiple defects in pollen production and viability, as well as elongation of
    staminal filaments and pollen tubes, all of which are pivotal processes needed
    for fertilization. Of these abnormalities, the defects in elongation of staminal
    filaments and pollen tubes were partially rescued by exogenous auxin. Moreover,
    DR5rev:GFP (for green fluorescent protein) expression was greatly reduced in filaments
    and anthers in ap2m mutant plants. At the cellular level, ap2m mutants displayed
    defects in both endocytosis of N-(3-triethylammonium-propyl)-4- (4-diethylaminophenylhexatrienyl)
    pyridinium dibromide, a lypophilic dye used as an endocytosis marker, and polar
    localization of auxin-efflux carrier PIN FORMED2 (PIN2) in the stamen filaments.
    Moreover, these defects were phenocopied by treatment with Tyrphostin A23, an
    inhibitor of endocytosis. Based on these results, we propose that AP-2-dependent
    endocytosis plays a crucial role in coordinating the multiple developmental aspects
    of male reproductive organs by modulating cellular auxin level through the regulation
    of the amount and polarity of PINs.
article_processing_charge: No
author:
- first_name: Soo
  full_name: Kim, Soo
  last_name: Kim
- first_name: Zheng
  full_name: Xu, Zheng
  last_name: Xu
- first_name: Kyungyoung
  full_name: Song, Kyungyoung
  last_name: Song
- first_name: Dae
  full_name: Kim, Dae
  last_name: Kim
- first_name: Hyangju
  full_name: Kang, Hyangju
  last_name: Kang
- first_name: Ilka
  full_name: Reichardt, Ilka
  last_name: Reichardt
- first_name: Eun
  full_name: Sohn, Eun
  last_name: Sohn
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Gerd
  full_name: Juergens, Gerd
  last_name: Juergens
- first_name: Inhwan
  full_name: Hwang, Inhwan
  last_name: Hwang
citation:
  ama: Kim S, Xu Z, Song K, et al. Adaptor protein complex 2-mediated endocytosis
    is crucial for male reproductive organ development in arabidopsis. <i>Plant Cell</i>.
    2013;25(8):2970-2985. doi:<a href="https://doi.org/10.1105/tpc.113.114264">10.1105/tpc.113.114264</a>
  apa: Kim, S., Xu, Z., Song, K., Kim, D., Kang, H., Reichardt, I., … Hwang, I. (2013).
    Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive
    organ development in arabidopsis. <i>Plant Cell</i>. American Society of Plant
    Biologists. <a href="https://doi.org/10.1105/tpc.113.114264">https://doi.org/10.1105/tpc.113.114264</a>
  chicago: Kim, Soo, Zheng Xu, Kyungyoung Song, Dae Kim, Hyangju Kang, Ilka Reichardt,
    Eun Sohn, Jiří Friml, Gerd Juergens, and Inhwan Hwang. “Adaptor Protein Complex
    2-Mediated Endocytosis Is Crucial for Male Reproductive Organ Development in Arabidopsis.”
    <i>Plant Cell</i>. American Society of Plant Biologists, 2013. <a href="https://doi.org/10.1105/tpc.113.114264">https://doi.org/10.1105/tpc.113.114264</a>.
  ieee: S. Kim <i>et al.</i>, “Adaptor protein complex 2-mediated endocytosis is crucial
    for male reproductive organ development in arabidopsis,” <i>Plant Cell</i>, vol.
    25, no. 8. American Society of Plant Biologists, pp. 2970–2985, 2013.
  ista: Kim S, Xu Z, Song K, Kim D, Kang H, Reichardt I, Sohn E, Friml J, Juergens
    G, Hwang I. 2013. Adaptor protein complex 2-mediated endocytosis is crucial for
    male reproductive organ development in arabidopsis. Plant Cell. 25(8), 2970–2985.
  mla: Kim, Soo, et al. “Adaptor Protein Complex 2-Mediated Endocytosis Is Crucial
    for Male Reproductive Organ Development in Arabidopsis.” <i>Plant Cell</i>, vol.
    25, no. 8, American Society of Plant Biologists, 2013, pp. 2970–85, doi:<a href="https://doi.org/10.1105/tpc.113.114264">10.1105/tpc.113.114264</a>.
  short: S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml,
    G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.
date_created: 2018-12-11T11:46:52Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2025-09-30T07:17:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.113.114264
external_id:
  isi:
  - '000324920500019'
  pmid:
  - '23975898'
fulldoi: https://doi.org/10.1105/tpc.113.114264
intvolume: '        25'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784592/
month: '08'
oa: 1
oa_version: Submitted Version
page: 2970 - 2985
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '7312'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive
  organ development in arabidopsis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 25
year: '2013'
...
