Jesse, Fabienne. “The Lac Operon in the Wild.”https://doi.org/10.15479/AT:ISTA:th_857__Institute of Science and Technology Austria, 2017.https://doi.org/10.15479/AT:ISTA:th_857 .

Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Wodarski, and Jonathan P Bollback. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the :64 Phage Family.”https://doi.org/10.1098/rsif.2016.0139__Journal of the Royal Society Interface. Royal Society of London, 2017.https://doi.org/10.1098/rsif.2016.0139 .

Lagator, Mato, Tiago Paixao, Nicholas H Barton, Jonathan P Bollback, and Calin C Guet. “On the Mechanistic Nature of Epistasis in a Canonical Cis-Regulatory Element.”https://doi.org/10.7554/eLife.25192__ELife. eLife Sciences Publications, 2017.https://doi.org/10.7554/eLife.25192 .

Lagator, Mato, Claudia Igler, Anaisa Moreno, Calin C Guet, and Jonathan P Bollback. “Epistatic Interactions in the Arabinose Cis-Regulatory Element.”https://doi.org/10.1093/molbev/msv269__Molecular Biology and Evolution. Oxford University Press, 2016.https://doi.org/10.1093/molbev/msv269 .

Acar, Hande. “Selective Barriers to Horizontal Gene Transfer.” Institute of Science and Technology Austria, 2016.

Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Wodarski, and Jonathan P Bollback. “Data from Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the :64 Phage Family.”https://doi.org/10.6084/m9.figshare.4315652.v1__The Royal Society, 2016.https://doi.org/10.6084/m9.figshare.4315652.v1 .

Hall, Barry, Hande Acar, Anna Nandipati, and Miriam Barlow. “Growth Rates Made Easy.”https://doi.org/10.1093/molbev/mst187__Molecular Biology and Evolution. Oxford University Press, 2014.https://doi.org/10.1093/molbev/mst187 .

Kupczok, Anne, and Jonathan P Bollback. “Motif Depletion in Bacteriophages Infecting Hosts with CRISPR Systems.”https://doi.org/10.1186/1471-2164-15-663__BMC Genomics. BioMed Central, 2014.https://doi.org/10.1186/1471-2164-15-663 .

Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR Spacer Content Evolution .”https://doi.org/10.1186/1471-2148-13-54__BMC Evolutionary Biology. BioMed Central, 2013.https://doi.org/10.1186/1471-2148-13-54 .

Fernandes Redondo, Rodrigo A, Anne Kupczok, Gertraud Stift, and Jonathan P Bollback. “Complete Genome Sequence of the Novel Phage MG- Infecting Bacillus Weihenstephanensis.”https://doi.org/10.1128/genomeA.00216-13__Genome Announcements. American Society for Microbiology, 2013.https://doi.org/10.1128/genomeA.00216-13 .

Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.”https://doi.org/10.1186/1471-2148-13-222__BMC Evolutionary Biology. BioMed Central, 2013.https://doi.org/10.1186/1471-2148-13-222 .

Cozzuol, Mario, Camila Clozato, Elizete Holanda, Flávio Rodrigues, Samuel Nienow, Benoit De Thoisy, Rodrigo A Fernandes Redondo, and Fabrício Santos. “A New Species of Tapir from the Amazon.”https://doi.org/10.1644/12-MAMM-A-169.1__Journal of Mammalogy. Oxford University Press, 2013.https://doi.org/10.1644/12-MAMM-A-169.1 .

Tarazona Santos, Eduardo, Moara Machado, Wagner Magalhães, Renee Chen, Fernanda Lyon, Laurie Burdett, Andrew Crenshaw, et al. “Evolutionary Dynamics of the Human NADPH Oxidase Genes CYBB, CYBA, NC, and NC: Functional Implications.”https://doi.org/10.1093/molbev/mst119__Molecular Biology and Evolution. Oxford University Press, 2013.https://doi.org/10.1093/molbev/mst119 .

Ebersberger, Ingo, Ricardo De Matos Simoes, Anne Kupczok, Matthias Gube, Erika Kothe, Kerstin Voigt, and Arndt Von Haeseler. “A Consistent Phylogenetic Backbone for the Fungi.”https://doi.org/10.1093/molbev/msr285__Molecular Biology and Evolution. Oxford University Press, 2012.https://doi.org/10.1093/molbev/msr285 .

Jesse, Fabienne, and Katharina Riebel. “Social Facilitation of Male Song by Male and Female Conspecifics in the Zebra Finch, Taeniopygia Guttata.”https://doi.org/10.1016/j.beproc.2012.09.006__Behavioural Processes. Elsevier, 2012.https://doi.org/10.1016/j.beproc.2012.09.006 .

Vilaça, Sibelle, Rodrigo A Fernandes Redondo, Lívia Lins, and Fabrício Santos. “Remaining Genetic Diversity in Brazilian Merganser (Mergus Octosetaceus).”https://doi.org/10.1007/s10592-011-0262-5__Conservation Genetics. Springer, 2012.https://doi.org/10.1007/s10592-011-0262-5 .

Pereira, Anna, Flávia Leite, Bruno Brasil, Jamaria Soares Martins, Alice Torres, Paulo Pimenta, Thais Souto Padrón, et al. “A Vaccinia Virus-Driven Interplay between the MKK4/7-JNK1/2 Pathway and Cytoskeleton Reorganization.”https://doi.org/10.1128/JVI.05638-11__Journal of Virology. ASM, 2012.https://doi.org/10.1128/JVI.05638-11 .

Kupczok, Anne. “Consequences of Different Null Models on the Tree Shape Bias of Supertree Methods.”https://doi.org/10.1093/sysbio/syq086__Systematic Biology. Oxford University Press, 2011.https://doi.org/10.1093/sysbio/syq086 .

Kupczok, Anne. “Split Based Computation of Majority Rule Supertrees.”https://doi.org/10.1186/1471-2148-11-205__BMC Evolutionary Biology. BioMed Central, 2011.https://doi.org/10.1186/1471-2148-11-205 .

Kupczok, Anne, Heiko Schmidt, and Arndt Von Haeseler. “Accuracy of Phylogeny Reconstruction Methods Combining Overlapping Gene Data Sets .”https://doi.org/10.1186/1748-7188-5-37__Algorithms for Molecular Biology. BioMed Central, 2010.https://doi.org/10.1186/1748-7188-5-37 .