Research data for the publication "Imaging brain tissue architecture across millimeter to nanometer scales"
J.G. Danzl, (2023).
LibreCat: https://research-explorer.ista.ac.at/record/13126
DOI: 10.15479/AT:ISTA:13126

Chiral and nematic phases of flexible active filaments
Z. Dunajova, B. Prats Mateu, P. Radler, K. Lim, D. Brandis, P. Velicky, J.G. Danzl, R.W. Wong, J. Elgeti, E.B. Hannezo, M. Loose, (2023).
LibreCat: https://research-explorer.ista.ac.at/record/13116
DOI: 10.15479/AT:ISTA:13116

Chiral and nematic phases of flexible active filaments
Z. Dunajova, B. Prats Mateu, P. Radler, K. Lim, D. Brandis, P. Velicky, J.G. Danzl, R.W. Wong, J. Elgeti, E.B. Hannezo, M. Loose, Nature Physics 19 (2023) 1916–1926.
LibreCat: https://research-explorer.ista.ac.at/record/13314
DOI: 10.1038/s41567-023-02218-w
PMID: 38075437

Imaging brain tissue architecture across millimeter to nanometer scales
J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, Nature Biotechnology (2023).
LibreCat: https://research-explorer.ista.ac.at/record/14257
DOI: 10.1038/s41587-023-01911-8
WoS: 001065254200001

A versatile toolbox for the comprehensive analysis of nervous tissue organization with light microscopy
J.M. Michalska, A Versatile Toolbox for the Comprehensive Analysis of Nervous Tissue Organization with Light Microscopy, Institute of Science and Technology Austria, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/12470
DOI: 10.15479/at:ista:12470

A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory
Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11951
DOI: 10.1038/s41467-022-32559-8
WoS: 000841396400008

CH haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories
C.E. Villa, C. Cheroni, C. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A.Ç. Yahya, J. Morandell, M. Gabriele, M. Tavakoli, J. Lyudchik, C.M. Sommer, M. Gabitto, J.G. Danzl, G. Testa, G. Novarino, Cell Reports 39 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11160
DOI: 10.1016/j.celrep.2022.110615
WoS: 000785983900003
PMID: 35385734

Saturated reconstruction of living brain tissue
P. Velicky, E. Miguel Villalba, J.M. Michalska, D. Wei, Z. Lin, J. Watson, J. Troidl, J. Beyer, Y. Ben Simon, C.M. Sommer, W. Jahr, A. Cenameri, J. Broichhagen, S.G.N. Grant, P.M. Jonas, G. Novarino, H. Pfister, B. Bickel, J.G. Danzl, BioRxiv (n.d.).
LibreCat: https://research-explorer.ista.ac.at/record/11943
DOI: 10.1101/2022.03.16.484431

Uncovering brain tissue architecture across scales with super-resolution light microscopy
J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, A. Venturino, K. Roessler, T. Czech, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, BioRxiv (n.d.).
LibreCat: https://research-explorer.ista.ac.at/record/11950
DOI: 10.1101/2022.08.17.504272

Simple multi-color super-resolution by  microscopy
S.M. Truckenbrodt, S.O. Rizzoli, in:, Methods in Cell Biology, Elsevier, 2021, pp. 33–56.
LibreCat: https://research-explorer.ista.ac.at/record/7941
DOI: 10.1016/bs.mcb.2020.04.016
PMID: 33478696

Pycro-Manager: Open-source software for customized and reproducible microscope control
H. Pinkard, N. Stuurman, I.E. Ivanov, N.M. Anthony, W. Ouyang, B. Li, B. Yang, M.A. Tsuchida, B. Chhun, G. Zhang, R. Mei, M. Anderson, D.P. Shepherd, I. Hunt-Isaak, R.L. Dunn, W. Jahr, S. Kato, L.A. Royer, J.R. Thiagarajah, K.W. Eliceiri, E. Lundberg, S.B. Mehta, L. Waller, Nature Methods 18 (2021) 226–228.
LibreCat: https://research-explorer.ista.ac.at/record/9258
DOI: 10.1038/s41592-021-01087-6
WoS: 000625600600007
PMID: 33674797

Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, G.A. Dimchev, A. Nicolas, C.M. Sommer, C. Kreuzinger, C. Dotter, L. Knaus, Z. Dobler, E. Cacci, F.K. Schur, J.G. Danzl, G. Novarino, Nature Communications 12 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9429
DOI: 10.1038/s41467-021-23123-x
WoS: 000658769900010

Strategies to maximize performance in STimulated Emission Depletion (STED) nanoscopy of biological specimens
W. Jahr, P. Velicky, J.G. Danzl, Methods 174 (2020) 27–41.
LibreCat: https://research-explorer.ista.ac.at/record/6808
DOI: 10.1016/j.ymeth.2019.07.019
WoS: 000525860400005
PMID: 31344404

Advantages of acute brain slices prepared at physiological temperature in the characterization of synaptic functions
K. Eguchi, P. Velicky, E. Saeckl, M. Itakura, Y. Fukazawa, J.G. Danzl, R. Shigemoto, Frontiers in Cellular Neuroscience 14 (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7665
DOI: 10.3389/fncel.2020.00063
WoS: 000525582200001

Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, A. Nicolas, C.M. Sommer, C. Kreuzinger, L. Knaus, Z. Dobler, E. Cacci, J.G. Danzl, G. Novarino, BioRxiv (n.d.).
LibreCat: https://research-explorer.ista.ac.at/record/7800
DOI: 10.1101/2020.01.10.902064 

A fast and simple contact printing approach to generate 2D protein nanopatterns
M. Lindner, A. Tresztenyak, G. Fülöp, W. Jahr, A. Prinz, I. Prinz, J.G. Danzl, G.J. Schütz, E. Sevcsik, Frontiers in Chemistry 6 (2019).
LibreCat: https://research-explorer.ista.ac.at/record/6029
DOI: 10.3389/fchem.2018.00655
WoS: 000456718000001

A practical guide to optimization in  expansion microscopy
S.M. Truckenbrodt, C.M. Sommer, S.O. Rizzoli, J.G. Danzl, Nature Protocols 14 (2019) 832–863.
LibreCat: https://research-explorer.ista.ac.at/record/6052
DOI: 10.1038/s41596-018-0117-3
WoS: 000459890700008
PMID: 30778205

Diffraction-unlimited optical imaging for synaptic physiology
J.G. Danzl, Opera Medica et Physiologica 4 (2018) 11.
LibreCat: https://research-explorer.ista.ac.at/record/9229
DOI: 10.20388/omp2018.00s1.001

Newly produced synaptic vesicle proteins are preferentially used in synaptic transmission
S.M. Truckenbrodt, A. Viplav, S. Jähne, A. Vogts, A. Denker, H. Wildhagen, E. Fornasiero, S. Rizzoli, The EMBO Journal 37 (2018).
LibreCat: https://research-explorer.ista.ac.at/record/145
DOI: 10.15252/embj.201798044
WoS: 000440416900005
PMID: 29950309

Optical control of L-type C+ channels using a diltiazem photoswitch
T. Fehrentz, F. Huber, N. Hartrampf, T. Bruegmann, J. Frank, N. Fine, D. Malan, J.G. Danzl, D. Tikhonov, M. Sumser, P. Sasse, D. Hodson, B. Zhorov, N. Klocker, D. Trauner, Nature Chemical Biology 14 (2018) 764–767.
LibreCat: https://research-explorer.ista.ac.at/record/159
DOI: 10.1038/s41589-018-0090-8
WoS: 000438970200010