ARCH-COM Category Report: Hybrid systems with piecewise constant dynamics
G. Frehse, A. Abate, D. Adzkiya, A. Becchi, L. Bu, A. Cimatti, M. Giacobbe, A. Griggio, S. Mover, M.S. Mufid, I. Riouak, S. Tonetta, E. Zaffanella, in:, G. Frehse, M. Althoff (Eds.), ARC. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems, EasyChair, 2019, pp. 1–13.

Tropical formulae for summation over a part of SL(2,Z)
N. Kalinin, M. Shkolnikov, European Journal of Mathematics 5 (2019) 909–928.

Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids
Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki, in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.

Per-session security: Password-based cryptography revisited
G. Demay, P. Gazi, U. Maurer, B. Tackmann, Journal of Computer Security 27 (2019) 75–111.

Simplices modelled on spaces of constant curvature
R. Dyer, G. Vegter, M. Wintraecken, Journal of Computational Geometry  10 (2019) 223–256.

Simple verifiable delay functions
K.Z. Pietrzak, in:, 10th Innovations in Theoretical Computer Science Conference, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.

Formal synthesis of stabilizing controllers for periodically controlled linear switched systems
A. Kundu, M. Garcia Soto, P. Prabhakar, in:, 5th Indian Control Conference Proceedings, IEEE, 2019.

The extrinsic nature of the Hausdorff distance of optimal triangulations of manifolds
G. Vegter, M. Wintraecken, in:, The 31st Canadian Conference in Computational Geometry, 2019, pp. 275–279.

Topological data analysis in information space
H. Edelsbrunner, Z. Virk, H. Wagner, in:, 35th International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 31:1-31:14.

Optimized reaction pair of the CysHis tag and Ni(II)-NTA probe for highly selective chemical labeling of membrane proteins
N. Zenmyo, H. Tokumaru, S. Uchinomiya, H. Fuchida, S. Tabata, I. Hamachi, R. Shigemoto, A. Ojida, Bulletin of the Chemical Society of Japan 92 (2019) 995–1000.

Testing the complexity of a valued CSP language
V. Kolmogorov, in:, 46th International Colloquium on Automata, Languages and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 77:1-77:12.

Sampling the integers with low relative error
M. Walter, in:, J. Buchmann, A. Nitaj, T. Rachidi (Eds.), Progress in Cryptology – AFRICACRYPT 2019, Springer Nature, Cham, 2019, pp. 157–180.

Rate-flexible fast polar decoders
S.A. Hashemi, C. Condo, M. Mondelli, W.J. Gross, IEEE Transactions on Signal Processing 67 (2019).

On grounded L-graphs and their relatives
V. Jelínek, M. Töpfer, Electronic Journal of Combinatorics 26 (2019).

Bidding games on Markov decision processes
G. Avni, T.A. Henzinger, R. Ibsen-Jensen, P. Novotny, in:,  Proceedings of the 13th International Conference of Reachability Problems, Springer, 2019, pp. 1–12.

Near-linear time algorithms for Streett objectives in graphs and MDPs
K. Chatterjee, W. Dvorák, M.H. Henzinger, A. Svozil, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.

Designing worm-inspired neural networks for interpretable robotic control
M. Lechner, R. Hasani, M. Zimmer, T.A. Henzinger, R. Grosu, in:, Proceedings - IEEE International Conference on Robotics and Automation, IEEE, 2019.

Determinacy in discrete-bidding infinite-duration games
M. Aghajohari, G. Avni, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.

Long-run average behavior of vector addition systems with states
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.

Combinations of Qualitative Winning for Stochastic Parity Games
K. Chatterjee, N. Piterman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.

Byzantine approximate agreement on graphs
T. Nowak, J. Rybicki, in:, 33rd International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 29:1--29:17.

Response characterization for auditing cell dynamics in long short-term memory networks
R. Hasani, A. Amini, M. Lechner, F. Naser, R. Grosu, D. Rus, in:, Proceedings of the International Joint Conference on Neural Networks, IEEE, 2019.

A new coding paradigm for the primitive relay channel
M. Mondelli, S.H. Hassani, R. Urbanke, Algorithms 12 (2019).

Dirac masses and isometric rigidity
G.P. Geher, T. Titkos, D. Virosztek, in:, Kyoto RIMS Kôkyûroku, Research Institute for Mathematical Sciences, Kyoto University, 2019, pp. 34–41.

Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt
K. Kersting, C. Lampert, C. Rothkopf, eds., Wie Maschinen Lernen: Künstliche Intelligenz Verständlich Erklärt, 1st ed., Springer Nature, Wiesbaden, 2019.

Z_2-Genus of graphs and minimum rank of partial symmetric matrices
R. Fulek, J. Kyncl, in:, 35th International Symposium on Computational Geometry (SoCG 2019), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.

Continuous-time models for system design and analysis
R. Alur, M. Giacobbe, T.A. Henzinger, K.G. Larsen, M. Mikudionis, in:, B. Steffen, G. Woeginger (Eds.), Computing and Software Science, Springer Nature, 2019, pp. 452–477.

Penalization via global functionals of optimal-control problems for dissipative evolution
L. Portinale, U. Stefanelli, Advances in Mathematical Sciences and Applications 28 (2019) 425–447.

Action at a distance in transcriptional regulation
W. Bialek, T. Gregor, G. Tkadik, ArXiv:1912.08579 (n.d.).

ARCH-COM Category Report: Continuous and hybrid systems with nonlinear dynamics
F. Immler, M. Althoff, L. Benet, A. Chapoutot, X. Chen, M. Forets, L. Geretti, N. Kochdumper, D.P. Sanders, C. Schilling, in:, EPiC Series in Computing, EasyChair Publications, 2019, pp. 41–61.

New edge asymptotics of skew Young diagrams via free boundaries
D. Betea, J. Bouttier, P. Nejjar, M. Vuletíc, in:, Proceedings on the 31st International Conference on Formal Power Series and Algebraic Combinatorics, Formal Power Series and Algebraic Combinatorics, 2019.

ARCH-COM Category Report: Continuous and hybrid systems with linear continuous dynamics
M. Althoff, S. Bak, M. Forets, G. Frehse, N. Kochdumper, R. Ray, C. Schilling, S. Schupp, in:, EPiC Series in Computing, EasyChair, 2019, pp. 14–40.

DNA demethylation by ROa in rice vegetative cells promotes methylation in sperm
M.Y. Kim, A. Ono, S. Scholten, T. Kinoshita, D. Zilberman, T. Okamoto, R.L. Fischer, Proceedings of the National Academy of Sciences 116 (2019) 9652–9657.

Data from: Is the sky the limit? On the expansion threshold of a species' range
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DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
K.D. Harris, J.P.B. Lloyd, K. Domb, D. Zilberman, A. Zemach, Epigenetics and Chromatin 12 (2019).

Natural depletion of histone  in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
S. He, M. Vickers, J. Zhang, X. Feng, ELife 8 (2019).

Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis
E.J. Lawrence, H. Gao, A.J. Tock, C. Lambing, A.R. Blackwell, X. Feng, I.R. Henderson, Current Biology 29 (2019) 2676–2686.e3.

Folding polyominoes with holes into a cube
O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P. Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt, in:, Proceedings of the 31st Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2019, pp. 164–170.

Bidding mechanisms in graph games
G. Avni, T.A. Henzinger, D. Zikelic, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019.

Supplementary information - Collective force generation by molecular motors is determined by strain-induced unbinding
M.C. Ucar, R. Lipowsky, (2019).

The reach, metric distortion, geodesic convexity and the variation of tangent spaces
J.-D. Boissonnat, A. Lieutier, M. Wintraecken, Journal of Applied and Computational Topology 3 (2019) 29–58.

A Feynman–Kac formula for stochastic Dirichlet problems
M. Gerencser, I. Gyöngy, Stochastic Processes and Their Applications 129 (2019) 995–1012.

Bose–Einstein condensation in a dilute, trapped gas at positive temperature
A. Deuchert, R. Seiringer, J. Yngvason, Communications in Mathematical Physics 368 (2019) 723–776.

Evolving inversions
R. Faria, K. Johannesson, R.K. Butlin, A.M. Westram, Trends in Ecology and Evolution 34 (2019) 239–248.

Arithmetic and representation theory of wild character varieties
T. Hausel, M. Mereb, M. Wong, Journal of the European Mathematical Society 21 (2019) 2995–3052.

CUGC for pontocerebellar hypoplasia type 9 and spastic paraplegia-63
A. Marsh, G. Novarino, P. Lockhart, R. Leventer, European Journal of Human Genetics 27 (2019) 161–166.

Entropy solutions for stochastic porous media equations
K. Dareiotis, M. Gerencser, B. Gess, Journal of Differential Equations 266 (2019) 3732–3763.

N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated
R. Mócsai, R. Figl, C. Troschl, R. Strasser, E. Svehla, M. Windwarder, A. Thader, F. Altmann, Scientific Reports 9 (2019).

Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SY contact site expansion in Arabidopsis
E. Lee, S. Vanneste, J. Pérez-Sancho, F. Benitez-Fuente, M. Strelau, A.P. Macho, M.A. Botella, J. Friml, A. Rosado, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 1420–1429.

Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone
C. Andalo, M. Burrus, S. Paute, C. Lauzeral, D. Field, Botany Letters 166 (2019) 80–92.

Extending partial representations of circle graphs
S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.

Jointly convex quantum Jensen divergences
D. Virosztek, Linear Algebra and Its Applications 576 (2019) 67–78.

Sieving rational points on varieties
T.D. Browning, D. Loughran, Transactions of the American Mathematical Society 371 (2019) 5757–5785.

Singular SPDEs in domains with boundaries
M. Gerencser, M. Hairer, Probability Theory and Related Fields 173 (2019) 697–758.

Stability of the matrix Dyson equation and random matrices with correlations
O.H. Ajanki, L. Erdös, T.H. Krüger, Probability Theory and Related Fields 173 (2019) 293–373.

A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries
B. Chatterjee, S. Peri, M. Sa, N. Singhal, in:, ACM International Conference Proceeding Series, ACM, 2019, pp. 168–177.

Thrackles: An improved upper bound
R. Fulek, J. Pach, Discrete Applied Mathematics 259 (2019) 266–231.

Thermodynamics of duplication thresholds in synthetic protocell systems
B. Corominas-Murtra, Life 9 (2019).

A fast and simple contact printing approach to generate 2D protein nanopatterns
M. Lindner, A. Tresztenyak, G. Fülöp, W. Jahr, A. Prinz, I. Prinz, J.G. Danzl, G.J. Schütz, E. Sevcsik, Frontiers in Chemistry 6 (2019).

A solution theory for quasilinear singular SPDEs
M. Gerencser, M. Hairer, Communications on Pure and Applied Mathematics 72 (2019) 1983–2005.

Termination of nondeterministic probabilistic programs
H. Fu, K. Chatterjee, in:, International Conference on Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2019, pp. 468–490.

Optimal decoding of cellular identities in a genetic network
M.D. Petkova, G. Tkadik, W. Bialek, E.F. Wieschaus, T. Gregor, Cell 176 (2019) 844–855.e15.

Experiments on a jet in a crossflow in the low-velocity-ratio regime
L. Klotz, K. Gumowski, J.E. Wesfreid, Journal of Fluid Mechanics 863 (2019) 386–406.

Semantic fault localization and suspiciousness ranking
M. Christakis, M. Heizmann, M.N. Mansur, C. Schilling, V. Wüstholz, in:, 25th International Conference on Tools and Algorithms for the Construction and Analysis of Systems , Springer Nature, 2019, pp. 226–243.

JuliaReach: A toolbox for set-based reachability
S. Bogomolov, M. Forets, G. Frehse, K. Potomkin, C. Schilling, in:, Proceedings of the 22nd International Conference on Hybrid Systems: Computation and Control, ACM, 2019, pp. 39–44.

A practical guide to optimization in  expansion microscopy
S.M. Truckenbrodt, C.M. Sommer, S.O. Rizzoli, J.G. Danzl, Nature Protocols 14 (2019) 832–863.

Light-activated Frizzle reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration
D. Capek, M. Smutny, A.M. Tichy, M. Morri, H.L. Janovjak, C.-P.J. Heisenberg, ELife 8 (2019).

Genetic dissection of assortative mating behavior
R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey, W.O. Mcmillan, C.D. Jiggins, PLoS Biology 17 (2019).

A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis
S. Yoshida, A. Van Der Schuren, M. Van Dop, L. Van Galen, S. Saiga, M. Adibi, B. Möller, C.A. Ten Hove, P. Marhavý, R. Smith, J. Friml, D. Weijers, Nature Plants 5 (2019) 160–166.

Quantum electromechanics of a hypersonic crystal
M. Kalaee, M. Mirhosseini, P.B. Dieterle, M. Peruzzo, J.M. Fink, O. Painter, Nature Nanotechnology 14 (2019) 334–339.

Two circles and only a straightedge
A. Akopyan, R. Fedorov, Proceedings of the American Mathematical Society 147 (2019) 91–102.

Raw behavioral data
R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey, W.O. Mcmillan, C.D. Jiggins, (2019).

Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes
R. Faria, P. Chaube, H.E. Morales, T. Larsson, A.R. Lemmon, E.M. Lemmon, M. Rafajlovi, M. Panova, M. Ravinet, K. Johannesson, A.M. Westram, R.K. Butlin, Molecular Ecology 28 (2019) 1375–1393.

Feedback-induced self-oscillations in large interacting systems subjected to phase transitions
D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).

Ephrin- controls excitatory synapse density through cell-cell competition for EphBs
N.T. Henderson, S.J. Le Marchand, M. Hruska, S. Hippenmeyer, L. Luo, M.B. Dalva, ELife 8 (2019).

Temporal order and precision of complex stress responses in individual bacteria
K. Mitosch, G. Rieckh, M.T. Bollenbach, Molecular Systems Biology 15 (2019).

A multi-faceted approach testing the effects of previous bacterial exposure on resistance and tolerance
M. Kutzer, J. Kurtz, S.A.O. Armitage, Journal of Animal Ecology 88 (2019) 566–578.

Inhibition of ABC and ABC at the mouse blood-brain barrier with marketed drugs to improve brain delivery of the model ABC/ABC substrate [11C]erlotinib
A. Traxl, S. Mairinger, T. Filip, M. Sauberer, J. Stanek, S. Poschner, W. Jäger, V. Zoufal, G. Novarino, N. Tournier, M. Bauer, T. Wanek, O. Langer, Molecular Pharmaceutics 16 (2019) 1282–1293.

Lateral inhibition in cell specification mediated by mechanical signals modulating TAZ activity
P. Xia, D.J. Gütl, V. Zheden, C.-P.J. Heisenberg, Cell 176 (2019) 1379–1392.e14.

Data from: A multi-faceted approach testing the effects of previous bacterial exposure on resistance and tolerance
M. Kutzer, J. Kurtz, S.A.O. Armitage, (2019).

Singular analytic linear cocycles with negative infinite Lyapunov exponents
C. Sadel, D. Xu, Ergodic Theory and Dynamical Systems 39 (2019) 1082–1098.

A full vectorial mapping of nanophotonic light fields
B. Le Feber, J.E. Sipe, M. Wulf, L. Kuipers, N. Rotenberg, Light: Science and Applications 8 (2019).

Root adaptation to O2-induced oxidative stress by ARF-GEF BEN1- and cytoskeleton-mediated PIN2 trafficking
M. Zwiewka, A. Bielach, P. Tamizhselvan, S. Madhavan, E.E. Ryad, S. Tan, M. Hrtyan, P. Dobrev, R. Vanková, J. Friml, V.B. Tognetti, Plant and Cell Physiology 60 (2019) 255–273.

Theory of mechanochemical patterning in biphasic biological tissues
P. Recho, A. Hallou, E.B. Hannezo, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 5344–5349.

CCL2 is a vascular permeability factor inducing CC-dependent endothelial retraction during lung metastasis
M. Roblek, D. Protsyuk, P.F. Becker, C. Stefanescu, C. Gorzelanny, J.F. Glaus Garzon, L. Knopfova, M. Heikenwalder, B. Luckow, S.W. Schneider, L. Borsig, Molecular Cancer Research 17 (2019) 783–793.

Why structure matters
N.H. Barton, J. Hermisson, M. Nordborg, ELife 8 (2019).

Boundary regularity of stochastic PDEs
M. Gerencser, Annals of Probability 47 (2019) 804–834.

Genetic screen for factors mediating PIN polarization in gravistimulated Arabidopsis thaliana hypocotyls
H. Rakusová, H. Han, P. Valosek, J. Friml, The Plant Journal 98 (2019) 1048–1059.

An integrated assay to probe endothelial glycocalyx-blood cell interactions under flow in mechanically and biochemically well-defined environments
H.S. Davies, N.S. Baranova, N. El Amri, L. Coche-Guérente, C. Verdier, L. Bureau, R.P. Richter, D. Débarre, Matrix Biology 78–79 (2019) 47–59.

Counting rational points on biquadratic hypersurfaces
T.D. Browning, L.Q. Hu, Advances in Mathematics 349 (2019) 920–940.

Nitrate modulates the differentiation of root distal stem cells
Y. Wang, Z. Gong, J. Friml, J. Zhang, Plant Physiology 180 (2019) 22–25.

Protective properties of the cultured stem cell proteome studied in an animal model of acetaminophen-induced acute liver failure
A.A. Temnov, K.A. Rogov, A.N. Sklifas, E.V. Klychnikova, M. Hartl, K. Djinovic-Carugo, A. Charnagalov, Molecular Biology Reports (2019).

Resonant electro-optic frequency comb
A.R. Rueda Sanchez, F. Sedlmeir, M. Kumari, G. Leuchs, H.G.L. Schwefel, Nature 568 (2019) 378–381.

Hippocampal reactivation of random trajectories resembling Brownian diffusion
F. Stella, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 102 (2019) 450–461.

State space geometry of the chaotic pilot-wave hydrodynamics
N.B. Budanur, M. Fleury, Chaos: An Interdisciplinary Journal of Nonlinear Science 29 (2019).

Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging
F.K. Schur, Current Opinion in Structural Biology 58 (2019) 1–9.

Interface-aware signal temporal logic
T. Ferrere, D. Nickovic, A. Donzé, H. Ito, J. Kapinski, in:, Proceedings of the 2019 22nd ACM International Conference on Hybrid Systems: Computation and Control, ACM, 2019, pp. 57–66.

Fundamental solutions for water wave animation
C. Schreck, C. Hafner, C. Wojtan, ACM Transactions on Graphics 38 (2019).

Phase-field simulation of core-annular pipe flow
B. Song, C. Plana, J.M. Lopez Alonso, M. Avila, International Journal of Multiphase Flow 117 (2019) 14–24.

An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, PLoS Genetics 15 (2019).