A marketplace for cloud resources
T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010, pp. 1–8.
LibreCat: https://research-explorer.ista.ac.at/record/4380
DOI: 10.1145/1879021.1879022

Robustness of sequential circuits
L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
LibreCat: https://research-explorer.ista.ac.at/record/4389
DOI: 10.1109/ACSD.2010.26

Quantitative Simulation Games
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Z. Manna, D. Peled (Eds.), Time For Verification: Essays in Memory of Amir Pnueli, Springer, 2010, pp. 42–60.
LibreCat: https://research-explorer.ista.ac.at/record/4392
DOI: 10.1007/978-3-642-13754-9_3

Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
LibreCat: https://research-explorer.ista.ac.at/record/4396
DOI: 10.1007/978-3-642-12029-9_19

Expressiveness and closure properties for quantitative languages
K. Chatterjee, L. Doyen, T.A. Henzinger, Logical Methods in Computer Science 6 (2010) 1–23.
LibreCat: https://research-explorer.ista.ac.at/record/3867
DOI: 10.2168/LMCS-6(3:10)2010

A new model for extinction and recolonization in two dimensions: Quantifying phylogeography
N.H. Barton, J. Kelleher, A. Etheridge, Evolution 64 (2010) 2701–2715.
LibreCat: https://research-explorer.ista.ac.at/record/474
DOI: 10.1111/j.1558-5646.2010.01019.x

Expressiveness of streaming string transducers
R. Alur, P. Cerny, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12.
LibreCat: https://research-explorer.ista.ac.at/record/488
DOI: 10.4230/LIPIcs.FSTTCS.2010.1

How do we remember the past in randomised strategies? 
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
LibreCat: https://research-explorer.ista.ac.at/record/489
DOI: 10.4204/EPTCS.25.7

Doomed program points
J. Hoenicke, K. Leino, A. Podelski, M. Schäf, T. Wies, Formal Methods in System Design 37 (2010) 171–199.
LibreCat: https://research-explorer.ista.ac.at/record/533
DOI: 10.1007/s10703-010-0102-0

Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–268.
LibreCat: https://research-explorer.ista.ac.at/record/4393
DOI: 10.1007/978-3-642-15375-4_18

Quantitative synthesis for concurrent programs
K. Chatterjee, P. Cerny, T.A. Henzinger, A. Radhakrishna, R. Singh, Quantitative Synthesis for Concurrent Programs, IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5388
DOI: 10.15479/AT:IST-2010-0004

Simulation distances
P. Cerny, T.A. Henzinger, A. Radhakrishna, Simulation Distances, IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5389
DOI: 10.15479/AT:IST-2010-0003

Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer, 2010, pp. 465–479.
LibreCat: https://research-explorer.ista.ac.at/record/4390
DOI: 10.1007/978-3-642-14295-6_41

GIST: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer, 2010, pp. 665–669.
LibreCat: https://research-explorer.ista.ac.at/record/4388
DOI: 10.1007/978-3-642-14295-6_57
arXiv: 1004.2367

Model checking of linearizability of concurrent list implementations
P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, Model Checking of Linearizability of Concurrent List Implementations, IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5391
DOI: 10.15479/AT:IST-2010-0001

Topological, automata-theoretic and logical characterization of finitary languages
K. Chatterjee, N. Fijalkow, Topological, Automata-Theoretic and Logical Characterization of Finitary Languages, IST Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/5390
DOI: 10.15479/AT:IST-2010-0002

Probabilistic Automata on infinite words: decidability and undecidability results
K. Chatterjee, T.A. Henzinger, in:, Springer, 2010, pp. 1–16.
LibreCat: https://research-explorer.ista.ac.at/record/3857
DOI: 10.1007/978-3-642-15643-4_1

Qualitative analysis of partially-observable Markov Decision Processes
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2010, pp. 258–269.
LibreCat: https://research-explorer.ista.ac.at/record/3855
DOI: 10.1007/978-3-642-15155-2_24

Local DNA hypomethylation activates genes in rice endosperm
A. Zemach, M.Y. Kim, P. Silva, J.A. Rodrigues, B. Dotson, M.D. Brooks, D. Zilberman, Proceedings of the National Academy of Sciences 107 (2010) 18729–18734.
LibreCat: https://research-explorer.ista.ac.at/record/9485
DOI: 10.1073/pnas.1009695107
PMID: 20937895

Evolution of eukaryotic DNA methylation and the pursuit of safer sex
A. Zemach, D. Zilberman, Current Biology 20 (2010) 0–5.
LibreCat: https://research-explorer.ista.ac.at/record/9489
DOI: 10.1016/j.cub.2010.07.007
PMID: 20833323

Genome-wide evolutionary analysis of eukaryotic DNA methylation
A. Zemach, I.E. McDaniel, P. Silva, D. Zilberman, Science 328 (2010) 916–919.
LibreCat: https://research-explorer.ista.ac.at/record/9452
DOI: 10.1126/science.1186366
PMID: 20395474 

Cryptic variation between species and the basis of hybrid performance
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, PLoS Biology 8 (2010).
LibreCat: https://research-explorer.ista.ac.at/record/3779
DOI: 10.1371/journal.pbio.1000429

Heterosis and the drift load
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, (2010).
LibreCat: https://research-explorer.ista.ac.at/record/9764
DOI: 10.1371/journal.pbio.1000429.s003

Tapetal cell fate, lineage and proliferation in the Arabidopsis anther
X. Feng, H.G. Dickinson, Development 137 (2010) 2409–2416.
LibreCat: https://research-explorer.ista.ac.at/record/12199
DOI: 10.1242/dev.049320
PMID: 20570940

Cell–cell interactions during patterning of the <i>Arabidopsis</i> anther
X. Feng, H.G. Dickinson, Biochemical Society Transactions 38 (2010) 571–576.
LibreCat: https://research-explorer.ista.ac.at/record/12200
DOI: 10.1042/bst0380571
PMID: 20298223

Discounting in games across time scales
K. Chatterjee, R. Majumdar, in:, EPTCS, 2010, pp. 22–29.
LibreCat: https://research-explorer.ista.ac.at/record/3852
DOI: 10.4204/EPTCS.25.6
arXiv: 1006.1403

þffþffDendritic cell migration across basement membranes in the skin
H. Pflicke,   Dendritic Cell Migration across Basement Membranes in the Skin, Institute of Science and Technology Austria, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/3962

Forward analysis of depth-bounded processes
T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108.
LibreCat: https://research-explorer.ista.ac.at/record/4361
DOI: 10.1007/978-3-642-12032-9_8

Genetic diversity levels in fishery-exploited spiny lobsters of the Genus Palinurus (Decapoda: Achelata)
F. Palero, P. Abello, E. Macpherson, C. Matthee, M. Pascual, Journal of Crustacean Biology 30 (2010) 658–663.
LibreCat: https://research-explorer.ista.ac.at/record/3785
DOI: 10.1651/09-3192.1

The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails
A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
LibreCat: https://research-explorer.ista.ac.at/record/3780
DOI: 10.1111/j.1420-9101.2009.01770.x

Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
LibreCat: https://research-explorer.ista.ac.at/record/3843
DOI: 10.1109/HiBi.2009.23

Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
LibreCat: https://research-explorer.ista.ac.at/record/3841
DOI: 10.1007/978-3-642-04420-5_2

Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
LibreCat: https://research-explorer.ista.ac.at/record/3844
DOI: 10.1109/RTSS.2009.9

Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
LibreCat: https://research-explorer.ista.ac.at/record/3871
DOI: 10.1007/978-3-642-04081-8_17

Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
LibreCat: https://research-explorer.ista.ac.at/record/3870
DOI: 10.1145/1614431.1614432

Species' range: Adaptation in space and time
J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) 6–4.
LibreCat: https://research-explorer.ista.ac.at/record/4136
DOI: 10.1086/605958
PMID:  19788353

The evolution of strong reproductive isolation
N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
LibreCat: https://research-explorer.ista.ac.at/record/4242
DOI: 10.1111/j.1558-5646.2009.00622.x

Why sex and recombination? 
N.H. Barton, in:, Cold Spring Harbor Symposia on Quantitative Biology, Cold Spring Harbor Laboratory Press, 2009, pp. 187–195.
LibreCat: https://research-explorer.ista.ac.at/record/3675
DOI: 10.1101/sqb.2009.74.030

On the application of statistical physics to evolutionary biology
N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
LibreCat: https://research-explorer.ista.ac.at/record/3775
DOI: 10.1016/j.jtbi.2009.03.019

On relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
LibreCat: https://research-explorer.ista.ac.at/record/3837
DOI: 10.1145/1629335.1629346

The persistent Morse complex segmentation of a 3-manifold
H. Edelsbrunner, J. Harer, in:, Springer, 2009, pp. 36–50.
LibreCat: https://research-explorer.ista.ac.at/record/3968
DOI: 10.1007/978-3-642-10470-1_4

Statistical mechanics and the evolution of polygenic quantitative traits
N.H. Barton, H. De Vladar, Genetics 181 (2009) 997–1011.
LibreCat: https://research-explorer.ista.ac.at/record/4231
DOI: 10.1534/genetics.108.099309

Alternating weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
LibreCat: https://research-explorer.ista.ac.at/record/4542
DOI: 10.1007/978-3-642-03409-1_2

A survey of stochastic games with limsup and liminf objectives
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 1–15.
LibreCat: https://research-explorer.ista.ac.at/record/4545
DOI: 10.1007/978-3-642-02930-1_1

Stochastic games with finitary objectives
K. Chatterjee, T.A. Henzinger, F. Horn, in:, Springer, 2009, pp. 34–54.
LibreCat: https://research-explorer.ista.ac.at/record/4543
DOI: 10.1007/978-3-642-03816-7_4

Better quality in synthesis through quantitative objectives
R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
LibreCat: https://research-explorer.ista.ac.at/record/4569
DOI: 10.1007/978-3-642-02658-4_14
arXiv: 0904.2638

Gist: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5393
DOI: 10.15479/AT:IST-2009-0003

Improved lower bounds for request-response and finitary Streett games
K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5394
DOI: 10.15479/AT:IST-2009-0002

Probabilistic automata on infinite words: Decidability and undecidability results
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5392
DOI: 10.15479/AT:IST-2009-0004

Qualitative analysis of partially-observable Markov decision processes
K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
LibreCat: https://research-explorer.ista.ac.at/record/5395
DOI: 10.15479/AT:IST-2009-0001

Genome-wide demethylation of Arabidopsis endosperm
T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. Zilberman, Science 324 (2009) 1451–1454.
LibreCat: https://research-explorer.ista.ac.at/record/9453
DOI: 10.1126/science.1172417
PMID: 19520962

The evolving functions of DNA methylation
D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
LibreCat: https://research-explorer.ista.ac.at/record/9537
DOI: 10.1016/j.pbi.2008.07.004
PMID: 18774331

Histone A.Z and DNA methylation are mutually antagonistic chromatin marks
D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
LibreCat: https://research-explorer.ista.ac.at/record/9457
DOI: 10.1038/nature07324
PMID: 18815594

Identity and coalescence in structured populations: A commentary on 'Inbreeding coefficients and coalescence times' by Montgomery Slatkin
N.H. Barton, Genetics Research 89 (2008) 475–477.
LibreCat: https://research-explorer.ista.ac.at/record/517
DOI: 10.1017/S0016672308009683

DNA demethylation in the Arabidopsis genome
J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
LibreCat: https://research-explorer.ista.ac.at/record/9487
DOI: 10.1073/pnas.0701861104
PMID: 17409185

The human promoter methylome
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
LibreCat: https://research-explorer.ista.ac.at/record/9504
DOI: 10.1038/ng0407-442
PMID: 17392803

Genome-wide analysis of DNA methylation patterns
D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
LibreCat: https://research-explorer.ista.ac.at/record/9524
DOI: 10.1242/dev.001131
PMID: 17928417

Packaging the male germline in plants
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
LibreCat: https://research-explorer.ista.ac.at/record/12201
DOI: 10.1016/j.tig.2007.08.005
PMID: 17825943

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
LibreCat: https://research-explorer.ista.ac.at/record/9505
DOI: 10.1038/ng1929
PMID: 17128275

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
LibreCat: https://research-explorer.ista.ac.at/record/9491
DOI: 10.1016/j.cub.2005.01.008
PMID: 15668172 

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
LibreCat: https://research-explorer.ista.ac.at/record/9514
DOI: 10.1186/gb-2005-6-11-r90
PMID: 16277745

Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
LibreCat: https://research-explorer.ista.ac.at/record/9529
DOI: 10.1016/j.gde.2005.07.002
PMID: 16085410

Role of Arabidopsis ARGONAUT in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
LibreCat: https://research-explorer.ista.ac.at/record/9493
DOI: 10.1016/j.cub.2004.06.055
PMID: 15242620 

Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
LibreCat: https://research-explorer.ista.ac.at/record/9517
DOI: 10.1371/journal.pbio.0020104
PMID: 15024409

Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
LibreCat: https://research-explorer.ista.ac.at/record/9511
DOI: 10.1186/gb-2004-5-12-249
PMID: 15575975

RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. Zilberman,  Zhixin Xie,  Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
LibreCat: https://research-explorer.ista.ac.at/record/9454
DOI: 10.1126/science.1095989
PMID: 14988555

A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides
Z. Liao, M. Chen, Y. Gong, L. Guo, Q. Tan, X. Feng, X. Sun, F. Tan, K. Tang, DNA Sequence 15 (2004) 153–158.
LibreCat: https://research-explorer.ista.ac.at/record/12203
DOI: 10.1080/10425170410001667348
PMID: 15352294

Role of the DRM and CM methyltransferases in RNA-directed DNA methylation
X. Cao, W. Aufsatz, D. Zilberman, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
LibreCat: https://research-explorer.ista.ac.at/record/9495
DOI: 10.1016/j.cub.2003.11.052
PMID: 14680640

ARGONAUT control of locus-specific siRNA accumulation and DNA and histone methylation
D. Zilberman,  Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
LibreCat: https://research-explorer.ista.ac.at/record/9455
DOI: 10.1126/science.1079695
PMID: 12522258

Requirement of CHROMOMETHYLAS for maintenance of CpXpG methylation
A.M. Lindroth, X. Cao, J.P. Jackson, D. Zilberman, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.
LibreCat: https://research-explorer.ista.ac.at/record/9444
DOI: 10.1126/science.1059745
PMID: 11349138