[{"status":"public","article_number":"136483","month":"06","article_type":"original","oa_version":"None","doi":"10.1016/j.matlet.2024.136483","quality_controlled":"1","publisher":"Elsevier","volume":365,"author":[{"first_name":"Neelima","full_name":"Mahato, Neelima","last_name":"Mahato"},{"orcid":"0000-0003-2209-5269","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","first_name":"Saurabh","last_name":"Singh","full_name":"Singh, Saurabh"},{"last_name":"Sreekanth","full_name":"Sreekanth, T. V.M.","first_name":"T. V.M."},{"first_name":"Kisoo","last_name":"Yoo","full_name":"Yoo, Kisoo"},{"first_name":"Jonghoon","full_name":"Kim, Jonghoon","last_name":"Kim"}],"day":"15","scopus_import":"1","isi":1,"citation":{"ieee":"N. Mahato, S. Singh, T. V. M. Sreekanth, K. Yoo, and J. Kim, “In-situ engineered highly crystalline polythiophene empowered electrochemical capacitor-I: Synthesis, characterization, and electrochemical charge storage,” <i>Materials Letters</i>, vol. 365. Elsevier, 2024.","ama":"Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. In-situ engineered highly crystalline polythiophene empowered electrochemical capacitor-I: Synthesis, characterization, and electrochemical charge storage. <i>Materials Letters</i>. 2024;365. doi:<a href=\"https://doi.org/10.1016/j.matlet.2024.136483\">10.1016/j.matlet.2024.136483</a>","mla":"Mahato, Neelima, et al. “In-Situ Engineered Highly Crystalline Polythiophene Empowered Electrochemical Capacitor-I: Synthesis, Characterization, and Electrochemical Charge Storage.” <i>Materials Letters</i>, vol. 365, 136483, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.matlet.2024.136483\">10.1016/j.matlet.2024.136483</a>.","chicago":"Mahato, Neelima, Saurabh Singh, T. V.M. Sreekanth, Kisoo Yoo, and Jonghoon Kim. “In-Situ Engineered Highly Crystalline Polythiophene Empowered Electrochemical Capacitor-I: Synthesis, Characterization, and Electrochemical Charge Storage.” <i>Materials Letters</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.matlet.2024.136483\">https://doi.org/10.1016/j.matlet.2024.136483</a>.","ista":"Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. 2024. In-situ engineered highly crystalline polythiophene empowered electrochemical capacitor-I: Synthesis, characterization, and electrochemical charge storage. Materials Letters. 365, 136483.","short":"N. Mahato, S. Singh, T.V.M. Sreekanth, K. Yoo, J. Kim, Materials Letters 365 (2024).","apa":"Mahato, N., Singh, S., Sreekanth, T. V. M., Yoo, K., &#38; Kim, J. (2024). In-situ engineered highly crystalline polythiophene empowered electrochemical capacitor-I: Synthesis, characterization, and electrochemical charge storage. <i>Materials Letters</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.matlet.2024.136483\">https://doi.org/10.1016/j.matlet.2024.136483</a>"},"publication_status":"published","_id":"15348","type":"journal_article","intvolume":"       365","title":"In-situ engineered highly crystalline polythiophene empowered electrochemical capacitor-I: Synthesis, characterization, and electrochemical charge storage","article_processing_charge":"No","date_published":"2024-06-15T00:00:00Z","OA_type":"closed access","language":[{"iso":"eng"}],"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"MaIb"}],"abstract":[{"lang":"eng","text":"We report on synthesis of highly crystalline polythiophene and its application in supercapacitor electrodes. The material exhibits a remarkably stable electrochemical behavior and an excellent device performance. The device delivers an electrode specific capacitance (Csp) of 129.13F g−1, Cell Csp of 32.28F g−1 at 0.5 A/g; energy, and power densities of ∼ 3 Wh kg−1 and 250 W kg -1, respectively at 0.5 A/g. Also, it exhibits an excellent retention of Cell Csp and coulombic efficiency up to ∼ 95 % over 10,000 continuous galvanostatic charge discharge (GCD) cycles indicating a remarkable performance by a standalone, pristine and undoped polythiophene. Electrochemical impedance spectroscopy (EIS) studies further suggest material’s stable capacitive behavior. The material’s enhanced electrochemical properties, stable behavior and outstanding performance in device application are attributed to the crystalline phases present in the polymer matrix achievable via a slow rate of synthesis; overall, an edge over other conventional synthesis methods."}],"external_id":{"isi":["001300025600001"]},"publication_identifier":{"eissn":["1873-4979"],"issn":["0167-577X"]},"acknowledgement":"This research was supported by the Korea Evaluation Institute of Industrial Technology (No. 200116167, Development of Battery Safety Diagnosis System (BDS) SoC that predicts the internal state, explosion risk, remaining useful life, and replacement timing of electric vehicle batteries).","publication":"Materials Letters","date_created":"2024-04-28T22:00:56Z","year":"2024","date_updated":"2025-09-04T13:49:05Z"},{"has_accepted_license":"1","type":"journal_article","_id":"15350","intvolume":"       405","pmid":1,"date_published":"2024-04-09T00:00:00Z","title":"Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum boolean functions","article_processing_charge":"Yes (via OA deal)","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2024-05-06T06:18:45Z","language":[{"iso":"eng"}],"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"department":[{"_id":"JaMa"}],"external_id":{"pmid":["38606337"],"isi":["001199509500004"],"arxiv":["2209.07279"]},"abstract":[{"lang":"eng","text":"We extend three related results from the analysis of influences of Boolean functions to the quantum setting, namely the KKL theorem, Friedgut’s Junta theorem and Talagrand’s variance inequality for geometric influences. Our results are derived by a joint use of recently studied hypercontractivity and gradient estimates. These generic tools also allow us to derive generalizations of these results in a general von Neumann algebraic setting beyond the case of the quantum hypercube, including examples in infinite dimensions relevant to quantum information theory such as continuous variables quantum systems. Finally, we comment on the implications of our results as regards to noncommutative extensions of isoperimetric type inequalities, quantum circuit complexity lower bounds and the learnability of quantum observables."}],"publication":"Communications in Mathematical Physics","date_created":"2024-04-29T08:47:28Z","year":"2024","date_updated":"2025-09-04T13:50:22Z","arxiv":1,"publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"acknowledgement":"Open access funding provided by the Carolinas Consortium.\r\nH.Z. is supported by the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337. H.Z. would like to thank the American Institute of Mathematics and the AIM workshop Analysis on the hypercube with applications to quantum computing. He is also grateful to the organizers and other participants for creating an active atmosphere. The research of C.R. has been supported by ANR project QTraj (ANR-20-CE40-0024-01) of the French National Research Agency (ANR). C.R. acknowledges the support of the Munich Center for Quantum Sciences and Technology, as well as the Humboldt Foundation. C.R. would like to thank Amanda Young for fruitful discussion on the applications of Friedgut’s Junta theorem to learning quantum dynamics. The research of M.W. was funded by the Austrian Science Fund (FWF) under the Esprit Programme [ESP 156]. For the purpose of Open Access, the authors have applied a CC BY public copyright licence to any Author Accepted Manuscript (AAM) version arising from this submission. The authors want to thank Francisco Escudero Gutierrez and Hsin-Yuan Huang for helpful comments on an earlier version of the paper. They are grateful to the referees for the careful reading and helpful comments.","issue":"4","ddc":["510"],"article_number":"95","status":"public","oa_version":"Published Version","month":"04","article_type":"original","quality_controlled":"1","doi":"10.1007/s00220-024-04981-0","license":"https://creativecommons.org/licenses/by/4.0/","volume":405,"publisher":"Springer Nature","project":[{"name":"Curvature-dimension in noncommutative analysis","grant_number":"M03337","_id":"eb958bca-77a9-11ec-83b8-c565cb50d8d6"},{"_id":"34c6ea2d-11ca-11ed-8bc3-c04f3c502833","grant_number":"ESP156_N","name":"Gradient flow techniques for quantum Markov semigroups"}],"day":"09","author":[{"first_name":"Cambyse","full_name":"Rouzé, Cambyse","last_name":"Rouzé"},{"last_name":"Wirth","full_name":"Wirth, Melchior","id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","first_name":"Melchior","orcid":"0000-0002-0519-4241"},{"last_name":"Zhang","full_name":"Zhang, Haonan","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425","first_name":"Haonan"}],"scopus_import":"1","publication_status":"published","file":[{"success":1,"checksum":"8ecd168755f0d40ebd7cd0b71063acfc","creator":"dernst","date_created":"2024-05-06T06:18:45Z","file_id":"15365","date_updated":"2024-05-06T06:18:45Z","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_size":653676,"file_name":"2024_CommMathPhysics_Rouze.pdf"}],"isi":1,"citation":{"ieee":"C. Rouzé, M. Wirth, and H. Zhang, “Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum boolean functions,” <i>Communications in Mathematical Physics</i>, vol. 405, no. 4. Springer Nature, 2024.","ama":"Rouzé C, Wirth M, Zhang H. Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum boolean functions. <i>Communications in Mathematical Physics</i>. 2024;405(4). doi:<a href=\"https://doi.org/10.1007/s00220-024-04981-0\">10.1007/s00220-024-04981-0</a>","mla":"Rouzé, Cambyse, et al. “Quantum Talagrand, KKL and Friedgut’s Theorems and the Learnability of Quantum Boolean Functions.” <i>Communications in Mathematical Physics</i>, vol. 405, no. 4, 95, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1007/s00220-024-04981-0\">10.1007/s00220-024-04981-0</a>.","ista":"Rouzé C, Wirth M, Zhang H. 2024. Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum boolean functions. Communications in Mathematical Physics. 405(4), 95.","chicago":"Rouzé, Cambyse, Melchior Wirth, and Haonan Zhang. “Quantum Talagrand, KKL and Friedgut’s Theorems and the Learnability of Quantum Boolean Functions.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s00220-024-04981-0\">https://doi.org/10.1007/s00220-024-04981-0</a>.","apa":"Rouzé, C., Wirth, M., &#38; Zhang, H. (2024). Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum boolean functions. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-024-04981-0\">https://doi.org/10.1007/s00220-024-04981-0</a>","short":"C. Rouzé, M. Wirth, H. Zhang, Communications in Mathematical Physics 405 (2024)."}},{"date_created":"2024-05-02T08:31:38Z","date_updated":"2026-04-07T13:05:00Z","year":"2024","publication_identifier":{"issn":["2791-4585"]},"abstract":[{"lang":"eng","text":"Epilepsy affects about 50 to 65 million people globally. It summarizes a spectrum of neurological\r\ndisorders that have in common a hyperactivity of the neuronal network resulting in seizures. A common\r\nassumption is that an imbalance between neuronal excitation and inhibition is a key mechanism in\r\nseizure generation and epileptogeneisis. In at least one-third of the patients, current therapies have\r\nproven unsuccessful in treating seizure progression. One potential reason could be that the therapies\r\nonly focus on neurons. Recent studies suggest that neuronal hyperactivity causes a microglial\r\nresponse, which reinstates brain homeostasis. Additionally, interactions between microglia and neurons\r\nhave been shown to inhibit neuronal firing and dampen seizure activity. However, the exact relationship\r\nbetween microglia and seizure progression in epilepsy is yet to be elucidated. A main bottleneck is that\r\nseveral studies investigate microglia dynamics in ex vivo slice models, which can severely affect the\r\nmicroglia dynamics due to their rapid response to environmental changes. On the other hand, in vivo\r\nstudies focus mostly on behavior characterization of the epileptic seizure phenotype and their long-term\r\nconsequences on microglia activity leaving out the direct consequences of acute seizure activity on\r\nmicroglia dynamics.\r\nHere, we perform a pilot study to combine electroencephalography (EEG) and in vivo live imaging to\r\ndirectly monitor and correlate the onset of seizure activity with microglia response. To induce seizures,\r\nwe take advantage of the kainic acid (KA) model, which represents similar neuropathological and\r\nelectroencephalographic features seen in human patients with temporal lobe epilepsy (TLE). After\r\nconfirmation of induction of the seizure and microglia activity in the hippocampus as a focal point, we\r\ninvestigated whether these changes also reached the primary visual cortex (V1) as a secondary\r\ngeneralized seizure activity. Indeed, we found that microglia changed their morphology at high doses\r\nof KA in the V1. Next, we optimized each of the two methodological components: for the EEG recording,\r\nour initial attempts under the microscope suffered from extensive electrical noise, which overlaid the\r\nactual signal. Thus, we built a customized Faraday-cage and confirmed that the signal-to-noise ratio\r\nwas sufficiently reduced to be able to record brain oscillatory activity. For the in vivo live imaging of\r\nmicroglia, we had to optimize the imaging parameters, so that we would be able to detect microglial\r\nprocesses in a sufficient resolution to track their process changes. Finally, we combined both\r\nmethodologies with the KA model. We confirmed that KA induced seizure activity and found first\r\nindication that those correlate with microglia volume changes.\r\nOverall, we have developed a first methodological approach, which allows the analysis of the acute\r\neffects of seizure onset on microglia. Future studies will have to continue to optimize the drift during\r\nimaging recording and the post-image analysis. "}],"department":[{"_id":"SaSi"},{"_id":"GradSch"}],"supervisor":[{"id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","first_name":"Sandra","orcid":"0000-0001-8635-0877","last_name":"Siegert","full_name":"Siegert, Sandra"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","corr_author":"1","oa":1,"language":[{"iso":"eng"}],"file_date_updated":"2025-05-02T22:30:04Z","date_published":"2024-05-02T00:00:00Z","article_processing_charge":"No","title":"Investigating acute microglia response to seizure activity in vivo: Combining 2-Photon imaging and EEG recording","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","_id":"15352","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"PreCl"}],"type":"dissertation","publication_status":"published","alternative_title":["ISTA Master's Thesis"],"page":"54","citation":{"ieee":"J. S. Murmann, “Investigating acute microglia response to seizure activity in vivo: Combining 2-Photon imaging and EEG recording,” Institute of Science and Technology Austria, 2024.","short":"J.S. Murmann, Investigating Acute Microglia Response to Seizure Activity in Vivo: Combining 2-Photon Imaging and EEG Recording, Institute of Science and Technology Austria, 2024.","apa":"Murmann, J. S. (2024). <i>Investigating acute microglia response to seizure activity in vivo: Combining 2-Photon imaging and EEG recording</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:15352\">https://doi.org/10.15479/at:ista:15352</a>","chicago":"Murmann, Julie Stefanie. “Investigating Acute Microglia Response to Seizure Activity in Vivo: Combining 2-Photon Imaging and EEG Recording.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:15352\">https://doi.org/10.15479/at:ista:15352</a>.","ista":"Murmann JS. 2024. Investigating acute microglia response to seizure activity in vivo: Combining 2-Photon imaging and EEG recording. Institute of Science and Technology Austria.","mla":"Murmann, Julie Stefanie. <i>Investigating Acute Microglia Response to Seizure Activity in Vivo: Combining 2-Photon Imaging and EEG Recording</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:15352\">10.15479/at:ista:15352</a>.","ama":"Murmann JS. Investigating acute microglia response to seizure activity in vivo: Combining 2-Photon imaging and EEG recording. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:15352\">10.15479/at:ista:15352</a>"},"file":[{"relation":"main_file","access_level":"open_access","file_size":5936142,"file_name":"Murmann_Thesis_final_2024_2.pdf","date_updated":"2025-05-02T22:30:04Z","file_id":"15354","date_created":"2024-05-02T12:26:13Z","content_type":"application/pdf","creator":"cchlebak","checksum":"095817a6c944954ac3f277e547031a33","embargo":"2025-05-02"},{"embargo_to":"open_access","creator":"cchlebak","checksum":"43b632255372973a437ac87739cfd4db","access_level":"closed","file_size":20645510,"relation":"source_file","file_name":"Murmann_Thesis_final_2024.zip","date_updated":"2025-05-02T22:30:04Z","file_id":"15355","date_created":"2024-05-02T12:37:56Z","content_type":"application/x-zip-compressed"}],"day":"02","author":[{"first_name":"Julie Stefanie","id":"1d390868-f128-11eb-9611-a0ca5f7833b5","last_name":"Murmann","full_name":"Murmann, Julie Stefanie"}],"publisher":"Institute of Science and Technology Austria","OA_place":"publisher","doi":"10.15479/at:ista:15352","oa_version":"Published Version","month":"05","degree_awarded":"MS","ddc":["570"],"status":"public"},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"department":[{"_id":"MaIb"}],"external_id":{"isi":["001236643300001"]},"abstract":[{"lang":"eng","text":"Identifying efficient active sites for the direct synthesis of hydrogen peroxide over Pd-based catalysts has been a subject of considerable debate. In this study, we employ particle swarm optimization method and density functional theory to explore the H2O2 synthesis mechanism on Pd, PdO, and the partially oxidized surface (Pd9OX). A comprehensive mechanism for Pd9OX is elucidated, and subsequent coverage-dependent kinetic analysis allows for a quantitative assessment of catalytic performance at the interphase. Our findings conclusively establish that the interphase between Pd and PdO represents the optimal active site. Phase diagram analysis further aids in determining stable structures under reaction conditions. At 298.15 K and under oxygen balance, the Pd9O6 surface remains stable throughout the reaction, demonstrating high activity and selectivity. This work underscores the significance of the interphase in comprehending catalytic performance and unveils promising avenues for optimizing catalyst performance by controlling reaction conditions and surface composition."}],"publication":"Chemical Engineering Science","date_created":"2024-05-05T22:01:02Z","date_updated":"2025-09-04T13:54:17Z","year":"2024","publication_identifier":{"issn":["0009-2509"]},"acknowledgement":"The authors acknowledge the financial support from the National Key Research and Development Project of China (2021YFA1500900, 2022YFE0113800), the National Natural Science Foundation of China (22141001, U21A20298), Zhejiang Innovation Team (2017R5203).","type":"journal_article","_id":"15356","intvolume":"       295","date_published":"2024-08-05T00:00:00Z","title":"Identifying Pd9OX as the optimum catalyst for the direct synthesis of H2O2 through microkinetic modeling with coverage effects","article_processing_charge":"No","language":[{"iso":"eng"}],"OA_type":"free access","volume":295,"publisher":"Elsevier","day":"05","author":[{"first_name":"Jinyan","last_name":"Zhao","full_name":"Zhao, Jinyan"},{"full_name":"Yao, Zihao","last_name":"Yao","first_name":"Zihao"},{"last_name":"Bunting","full_name":"Bunting, Rhys","id":"91deeae8-1207-11ec-b130-c194ad5b50c6","first_name":"Rhys","orcid":"0000-0001-6928-074X"},{"first_name":"Yaqiu","full_name":"Wang, Yaqiu","last_name":"Wang"},{"full_name":"Wang, Jianguo","last_name":"Wang","first_name":"Jianguo"}],"scopus_import":"1","publication_status":"published","citation":{"short":"J. Zhao, Z. Yao, R. Bunting, Y. Wang, J. Wang, Chemical Engineering Science 295 (2024).","apa":"Zhao, J., Yao, Z., Bunting, R., Wang, Y., &#38; Wang, J. (2024). Identifying Pd9OX as the optimum catalyst for the direct synthesis of H2O2 through microkinetic modeling with coverage effects. <i>Chemical Engineering Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ces.2024.120199\">https://doi.org/10.1016/j.ces.2024.120199</a>","ama":"Zhao J, Yao Z, Bunting R, Wang Y, Wang J. Identifying Pd9OX as the optimum catalyst for the direct synthesis of H2O2 through microkinetic modeling with coverage effects. <i>Chemical Engineering Science</i>. 2024;295. doi:<a href=\"https://doi.org/10.1016/j.ces.2024.120199\">10.1016/j.ces.2024.120199</a>","chicago":"Zhao, Jinyan, Zihao Yao, Rhys Bunting, Yaqiu Wang, and Jianguo Wang. “Identifying Pd9OX as the Optimum Catalyst for the Direct Synthesis of H2O2 through Microkinetic Modeling with Coverage Effects.” <i>Chemical Engineering Science</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.ces.2024.120199\">https://doi.org/10.1016/j.ces.2024.120199</a>.","ista":"Zhao J, Yao Z, Bunting R, Wang Y, Wang J. 2024. Identifying Pd9OX as the optimum catalyst for the direct synthesis of H2O2 through microkinetic modeling with coverage effects. Chemical Engineering Science. 295, 120199.","mla":"Zhao, Jinyan, et al. “Identifying Pd9OX as the Optimum Catalyst for the Direct Synthesis of H2O2 through Microkinetic Modeling with Coverage Effects.” <i>Chemical Engineering Science</i>, vol. 295, 120199, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.ces.2024.120199\">10.1016/j.ces.2024.120199</a>.","ieee":"J. Zhao, Z. Yao, R. Bunting, Y. Wang, and J. Wang, “Identifying Pd9OX as the optimum catalyst for the direct synthesis of H2O2 through microkinetic modeling with coverage effects,” <i>Chemical Engineering Science</i>, vol. 295. Elsevier, 2024."},"isi":1,"article_number":"120199","main_file_link":[{"url":"https://doi.org/10.1016/j.ces.2024.120199","open_access":"1"}],"status":"public","oa_version":"None","month":"08","article_type":"original","doi":"10.1016/j.ces.2024.120199","quality_controlled":"1"},{"scopus_import":"1","isi":1,"citation":{"ieee":"Y. Liu <i>et al.</i>, “Enhancing thermoelectric performance of solutionpProcessed polycrystalline SnSe with PbSe nanocrystals,” <i>Chemical Engineering Journal</i>, vol. 490. Elsevier, 2024.","apa":"Liu, Y., Lee, S., Fiedler, C.,  Spadaro, M. C., Chang, C., Li, M., … Ibáñez, M. (2024). Enhancing thermoelectric performance of solutionpProcessed polycrystalline SnSe with PbSe nanocrystals. <i>Chemical Engineering Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cej.2024.151405\">https://doi.org/10.1016/j.cej.2024.151405</a>","short":"Y. Liu, S. Lee, C. Fiedler, M.C.  Spadaro, C. Chang, M. Li, M. Hong, J. Arbiol, M. Ibáñez, Chemical Engineering Journal 490 (2024).","mla":"Liu, Yu, et al. “Enhancing Thermoelectric Performance of SolutionpProcessed Polycrystalline SnSe with PbSe Nanocrystals.” <i>Chemical Engineering Journal</i>, vol. 490, 151405, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.cej.2024.151405\">10.1016/j.cej.2024.151405</a>.","ista":"Liu Y, Lee S, Fiedler C,  Spadaro MC, Chang C, Li M, Hong M, Arbiol J, Ibáñez M. 2024. Enhancing thermoelectric performance of solutionpProcessed polycrystalline SnSe with PbSe nanocrystals. Chemical Engineering Journal. 490, 151405.","chicago":"Liu, Yu, Seungho Lee, Christine Fiedler, Maria Chiara  Spadaro, Cheng Chang, Mingquan Li, Min Hong, Jordi Arbiol, and Maria Ibáñez. “Enhancing Thermoelectric Performance of SolutionpProcessed Polycrystalline SnSe with PbSe Nanocrystals.” <i>Chemical Engineering Journal</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.cej.2024.151405\">https://doi.org/10.1016/j.cej.2024.151405</a>.","ama":"Liu Y, Lee S, Fiedler C, et al. Enhancing thermoelectric performance of solutionpProcessed polycrystalline SnSe with PbSe nanocrystals. <i>Chemical Engineering Journal</i>. 2024;490. doi:<a href=\"https://doi.org/10.1016/j.cej.2024.151405\">10.1016/j.cej.2024.151405</a>"},"file":[{"creator":"dernst","checksum":"6609232a208b9a89d055a270ef0af1fe","success":1,"file_name":"2024_ChemEngineeringJour_Liu.pdf","file_size":12233704,"access_level":"open_access","relation":"main_file","content_type":"application/pdf","file_id":"18800","date_updated":"2025-01-09T09:24:29Z","date_created":"2025-01-09T09:24:29Z"}],"publication_status":"published","publisher":"Elsevier","project":[{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"volume":490,"author":[{"last_name":"Liu","full_name":"Liu, Yu","first_name":"Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7313-6740"},{"full_name":"Lee, Seungho","last_name":"Lee","first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425","orcid":"0000-0002-6962-8598"},{"id":"bd3fceba-dc74-11ea-a0a7-c17f71817366","first_name":"Christine","last_name":"Fiedler","full_name":"Fiedler, Christine"},{"full_name":" Spadaro, Maria Chiara","last_name":" Spadaro","first_name":"Maria Chiara"},{"orcid":"0000-0002-9515-4277","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","first_name":"Cheng","full_name":"Chang, Cheng","last_name":"Chang"},{"full_name":"Li, Mingquan","last_name":"Li","first_name":"Mingquan"},{"first_name":"Min","last_name":"Hong","full_name":"Hong, Min"},{"first_name":"Jordi","full_name":"Arbiol, Jordi","last_name":"Arbiol"},{"orcid":"0000-0001-5013-2843","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","full_name":"Ibáñez, Maria"}],"day":"15","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"20415"}]},"quality_controlled":"1","doi":"10.1016/j.cej.2024.151405","OA_place":"publisher","status":"public","ddc":["540"],"article_number":"151405","month":"06","article_type":"original","oa_version":"Published Version","abstract":[{"text":"There is a growing interest in cost-effective polycrystalline SnSe-based thermoelectric (TE) materials, which are able to replace the high performance but mechanically fragile and costly single-crystalline SnSe. In this study, we present a low-temperature solution-based approach to produce SnSe-PbSe nanocomposites with outstanding TE performance. Our method involves combining surfactant-free SnSe particles with oleate-capped PbSe nanocrystals in specific ratios, followed by thermal annealing and consolidation using spark plasma sintering. These nanocomposites are characterized by distinct compositional and structural properties that significantly impact their transport properties. In particular, the addition of oleate-capped PbSe nanocrystals results in: i) a reduction in the electrostatically adsorbed Na at the surface of the SnSe particles; ii) a reduction of Sn vacancies due to alloying with Pb; iii) an increase in grain boundary density; and iv) the formation of PbSnSe secondary phases. Notably, the SnSe-2.5 %PbSe nanocomposites demonstrate a 30 % decrease in thermal conductivity compared to that of the SnSe matrix. This reduction contributes to a maximum figure of merit (zT) of 1.75 at 788 K with a high average zT value of ca. 1.2 in the medium temperature range of 573–773 K. These values represent one of the highest reported in polycrystalline SnSe materials, showcasing the potential of our fabricated SnSe-PbSe nanocomposites for cost-effective TE applications.","lang":"eng"}],"external_id":{"isi":["001234835500001"]},"publication_identifier":{"issn":["1385-8947"]},"acknowledgement":"The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility, and the Lab Support Facility (LSF). Y.L., S.L., C.F., C.C. and M.I. acknowledge financial support from ISTA and the Werner Siemens Foundation. Y.L. acknowledges funding from the National Natural Science Foundation of China (NSFC) (Grants No. 22209034), the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province (Grant No. 2022LCX002). C.C. acknowledges funding from the National Natural Science Foundation of China (NSFC) (Grants No. 12374023). ICN2 acknowledges funding from Generalitat de Catalunya 2021SGR00457. The authors thank support from the project NANOGEN(PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/ and by “ERDF Away of making Europe”, by the “European Union”. ICN2 is supported by the Severo Ochoaprogram from Spanish MCIN / AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Programme / Generalitat de Catalunya. ICN2 is founding member of e-DREAM [70].","date_created":"2024-05-05T22:01:03Z","publication":"Chemical Engineering Journal","year":"2024","date_updated":"2026-04-07T11:52:31Z","corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"department":[{"_id":"MaIb"}],"title":"Enhancing thermoelectric performance of solutionpProcessed polycrystalline SnSe with PbSe nanocrystals","article_processing_charge":"Yes (via OA deal)","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2024-06-15T00:00:00Z","OA_type":"hybrid","file_date_updated":"2025-01-09T09:24:29Z","language":[{"iso":"eng"}],"_id":"15357","type":"journal_article","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NMR"},{"_id":"LifeSc"}],"has_accepted_license":"1","intvolume":"       490"},{"abstract":[{"text":"We consider how a population of N haploid individuals responds to directional selection on standing variation, with no new variation from recombination or mutation. Individuals have trait values z1,…,zN, which are drawn from a distribution ψ; the fitness of individual i is proportional to [Formula: see text] . For illustration, we consider the Laplace and Gaussian distributions, which are parametrised only by the variance V0, and show that for large N, there is a scaling limit which depends on a single parameter NV0. When selection is weak relative to drift (NV0≪1), the variance decreases exponentially at rate 1/N, and the expected ultimate gain in log fitness (scaled by V0), is just NV0, which is the same as Robertson's (1960) prediction for a sexual population. In contrast, when selection is strong relative to drift (NV0≫1), the ultimate gain can be found by approximating the establishment of alleles by a branching process in which each allele competes independently with the population mean and the fittest allele to establish is certain to fix. Then, if the probability of survival to time t∼1/V0 of an allele with value z is P(z), with mean P¯, the winning allele is the fittest of NP¯ survivors drawn from a distribution ψP/P¯. The expected ultimate change is ∼2log(1.15NV0) for a Gaussian distribution, and ∼-12log0.36NV0-log-log0.36NV0 for a Laplace distribution. This approach also predicts the variability of the process, and its dynamics; we show that in the strong selection regime, the expected genetic variance decreases as ∼t-3 at large times. We discuss how these results may be related to selection on standing variation that is spread along a linear chromosome.","lang":"eng"}],"external_id":{"isi":["001237016800001"],"pmid":["38643838"]},"acknowledgement":"We thank Emmanuel Schertzer and two reviewers for comments on this manuscript. NB thanks the European Research Council for support via the grant “HaplotypeStructure” 101055327. We would also like to give our sincere thanks to Alison Etheridge for her insight, inspiration and support over the years.","publication_identifier":{"eissn":["1096-0325"],"issn":["0040-5809"]},"year":"2024","date_updated":"2025-09-04T13:56:11Z","date_created":"2024-05-05T22:01:03Z","publication":"Theoretical Population Biology","oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","department":[{"_id":"NiBa"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Limits to selection on standing variation in an asexual population","article_processing_charge":"Yes (via OA deal)","date_published":"2024-06-01T00:00:00Z","pmid":1,"file_date_updated":"2024-05-13T08:22:21Z","language":[{"iso":"eng"}],"_id":"15358","type":"journal_article","has_accepted_license":"1","intvolume":"       157","scopus_import":"1","citation":{"ieee":"N. H. Barton and H. Sachdeva, “Limits to selection on standing variation in an asexual population,” <i>Theoretical Population Biology</i>, vol. 157. Elsevier, pp. 129–137, 2024.","apa":"Barton, N. H., &#38; Sachdeva, H. (2024). Limits to selection on standing variation in an asexual population. <i>Theoretical Population Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tpb.2024.04.001\">https://doi.org/10.1016/j.tpb.2024.04.001</a>","short":"N.H. Barton, H. Sachdeva, Theoretical Population Biology 157 (2024) 129–137.","ista":"Barton NH, Sachdeva H. 2024. Limits to selection on standing variation in an asexual population. Theoretical Population Biology. 157, 129–137.","chicago":"Barton, Nicholas H, and Himani Sachdeva. “Limits to Selection on Standing Variation in an Asexual Population.” <i>Theoretical Population Biology</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.tpb.2024.04.001\">https://doi.org/10.1016/j.tpb.2024.04.001</a>.","ama":"Barton NH, Sachdeva H. Limits to selection on standing variation in an asexual population. <i>Theoretical Population Biology</i>. 2024;157:129-137. doi:<a href=\"https://doi.org/10.1016/j.tpb.2024.04.001\">10.1016/j.tpb.2024.04.001</a>","mla":"Barton, Nicholas H., and Himani Sachdeva. “Limits to Selection on Standing Variation in an Asexual Population.” <i>Theoretical Population Biology</i>, vol. 157, Elsevier, 2024, pp. 129–37, doi:<a href=\"https://doi.org/10.1016/j.tpb.2024.04.001\">10.1016/j.tpb.2024.04.001</a>."},"file":[{"success":1,"checksum":"78f36488d24f868d5913624e9c8d88bf","creator":"dernst","file_id":"15383","date_updated":"2024-05-13T08:22:21Z","date_created":"2024-05-13T08:22:21Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_size":1098292,"file_name":"2024_TheorPopulationBiology_Barton.pdf"}],"isi":1,"page":"129-137","publication_status":"published","publisher":"Elsevier","project":[{"name":"Understanding the evolution of continuous genomes","grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00"}],"volume":157,"author":[{"last_name":"Barton","full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H"},{"first_name":"Himani","id":"42377A0A-F248-11E8-B48F-1D18A9856A87","last_name":"Sachdeva","full_name":"Sachdeva, Himani"}],"day":"01","doi":"10.1016/j.tpb.2024.04.001","quality_controlled":"1","status":"public","ddc":["570"],"article_type":"original","month":"06","oa_version":"Published Version"},{"has_accepted_license":"1","type":"journal_article","_id":"15359","intvolume":"       135","date_published":"2024-04-28T00:00:00Z","article_processing_charge":"Yes (in subscription journal)","title":"Molecular dynamics simulations of heat transport using machine-learned potentials: A mini-review and tutorial on GPUMD with neuroevolution potentials","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2024-05-13T08:07:44Z","language":[{"iso":"eng"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"department":[{"_id":"BiCh"}],"external_id":{"arxiv":["2401.16249"],"isi":["001215967400009"]},"abstract":[{"lang":"eng","text":"Molecular dynamics (MD) simulations play an important role in understanding and engineering heat transport properties of complex materials. An essential requirement for reliably predicting heat transport properties is the use of accurate and efficient interatomic potentials. Recently, machine-learned potentials (MLPs) have shown great promise in providing the required accuracy for a broad range of materials. In this mini-review and tutorial, we delve into the fundamentals of heat transport, explore pertinent MD simulation methods, and survey the applications of MLPs in MD simulations of heat transport. Furthermore, we provide a step-by-step tutorial on developing MLPs for highly efficient and predictive heat transport simulations, utilizing the neuroevolution potentials as implemented in the GPUMD package. Our aim with this mini-review and tutorial is to empower researchers with valuable insights into cutting-edge methodologies that can significantly enhance the accuracy and efficiency of MD simulations for heat transport studies."}],"publication":"Journal of Applied Physics","date_created":"2024-05-05T22:01:03Z","year":"2024","date_updated":"2025-09-04T13:55:06Z","arxiv":1,"publication_identifier":{"eissn":["1089-7550"],"issn":["0021-8979"]},"acknowledgement":"H.D. is supported by the Science Foundation from the Education Department of Liaoning Province (No. JYTMS20231613) and the Doctoral start-up Fund of Bohai University (No. 0523bs008). P.Y. is supported by the Israel Academy of Sciences and Humanities & Council for Higher Education Excellence Fellowship Program for International Postdoctoral Researchers. K.X. and T.L. acknowledge support from the National Key R&D Project from Ministry of Science and Technology of China (No. 2022YFA1203100), the Research Grants Council of Hong Kong (No. AoE/P-701/20), and RGC GRF (No. 14220022). Z.Z. acknowledges the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. S.X. acknowledges financial support from the National Natural Science Foundation of China (NNSFC) (Grant No. 12174276).","ddc":["530"],"issue":"16","article_number":"161101","status":"public","oa_version":"Preprint","month":"04","article_type":"review","quality_controlled":"1","doi":"10.1063/5.0200833","volume":135,"project":[{"grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program"}],"publisher":"AIP Publishing","day":"28","related_material":{"link":[{"url":"https://gitlab.com/brucefan1983/nep-data","relation":"software"}]},"author":[{"first_name":"Haikuan","full_name":"Dong, Haikuan","last_name":"Dong"},{"last_name":"Shi","full_name":"Shi, Yongbo","first_name":"Yongbo"},{"first_name":"Penghua","full_name":"Ying, Penghua","last_name":"Ying"},{"first_name":"Ke","full_name":"Xu, Ke","last_name":"Xu"},{"last_name":"Liang","full_name":"Liang, Ting","first_name":"Ting"},{"full_name":"Wang, Yanzhou","last_name":"Wang","first_name":"Yanzhou"},{"full_name":"Zeng, Zezhu","last_name":"Zeng","id":"54a2c730-803f-11ed-ab7e-95b29d2680e7","first_name":"Zezhu"},{"last_name":"Wu","full_name":"Wu, Xin","first_name":"Xin"},{"first_name":"Wenjiang","last_name":"Zhou","full_name":"Zhou, Wenjiang"},{"first_name":"Shiyun","last_name":"Xiong","full_name":"Xiong, Shiyun"},{"full_name":"Chen, Shunda","last_name":"Chen","first_name":"Shunda"},{"full_name":"Fan, Zheyong","last_name":"Fan","first_name":"Zheyong"}],"scopus_import":"1","ec_funded":1,"publication_status":"published","file":[{"file_name":"2024_JourApplPhysics_Dong.pdf","relation":"main_file","access_level":"open_access","file_size":3240613,"content_type":"application/pdf","date_created":"2024-05-13T08:07:44Z","file_id":"15382","date_updated":"2024-05-13T08:07:44Z","creator":"dernst","checksum":"4d6abb3ebe058ce8eebf4fc7e9cdda0d","success":1}],"citation":{"ieee":"H. Dong <i>et al.</i>, “Molecular dynamics simulations of heat transport using machine-learned potentials: A mini-review and tutorial on GPUMD with neuroevolution potentials,” <i>Journal of Applied Physics</i>, vol. 135, no. 16. AIP Publishing, 2024.","ista":"Dong H, Shi Y, Ying P, Xu K, Liang T, Wang Y, Zeng Z, Wu X, Zhou W, Xiong S, Chen S, Fan Z. 2024. Molecular dynamics simulations of heat transport using machine-learned potentials: A mini-review and tutorial on GPUMD with neuroevolution potentials. Journal of Applied Physics. 135(16), 161101.","chicago":"Dong, Haikuan, Yongbo Shi, Penghua Ying, Ke Xu, Ting Liang, Yanzhou Wang, Zezhu Zeng, et al. “Molecular Dynamics Simulations of Heat Transport Using Machine-Learned Potentials: A Mini-Review and Tutorial on GPUMD with Neuroevolution Potentials.” <i>Journal of Applied Physics</i>. AIP Publishing, 2024. <a href=\"https://doi.org/10.1063/5.0200833\">https://doi.org/10.1063/5.0200833</a>.","mla":"Dong, Haikuan, et al. “Molecular Dynamics Simulations of Heat Transport Using Machine-Learned Potentials: A Mini-Review and Tutorial on GPUMD with Neuroevolution Potentials.” <i>Journal of Applied Physics</i>, vol. 135, no. 16, 161101, AIP Publishing, 2024, doi:<a href=\"https://doi.org/10.1063/5.0200833\">10.1063/5.0200833</a>.","ama":"Dong H, Shi Y, Ying P, et al. Molecular dynamics simulations of heat transport using machine-learned potentials: A mini-review and tutorial on GPUMD with neuroevolution potentials. <i>Journal of Applied Physics</i>. 2024;135(16). doi:<a href=\"https://doi.org/10.1063/5.0200833\">10.1063/5.0200833</a>","apa":"Dong, H., Shi, Y., Ying, P., Xu, K., Liang, T., Wang, Y., … Fan, Z. (2024). Molecular dynamics simulations of heat transport using machine-learned potentials: A mini-review and tutorial on GPUMD with neuroevolution potentials. <i>Journal of Applied Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0200833\">https://doi.org/10.1063/5.0200833</a>","short":"H. Dong, Y. Shi, P. Ying, K. Xu, T. Liang, Y. Wang, Z. Zeng, X. Wu, W. Zhou, S. Xiong, S. Chen, Z. Fan, Journal of Applied Physics 135 (2024)."},"isi":1},{"publisher":"Springer Nature","volume":2787,"author":[{"full_name":"Jayasree, Aswathy","last_name":"Jayasree","first_name":"Aswathy"},{"first_name":"Hymavathi","full_name":"Salava, Hymavathi","last_name":"Salava"},{"last_name":"Nodzynski","full_name":"Nodzynski, Tomasz","first_name":"Tomasz"},{"last_name":"Sravankumar","full_name":"Sravankumar, Thula","orcid":"0000-0001-6925-6950","id":"055b7938-0b72-11ef-94eb-d14136011bb5","first_name":"Thula"}],"day":"25","scopus_import":"1","citation":{"ieee":"A. Jayasree, H. Salava, T. Nodzynski, and T. Sravankumar, “Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis thaliana Protoplasts from Leaf,” in <i>Plant Functional Genomics</i>, vol. 2787, F. Maghuly, Ed. Springer Nature, 2024, pp. 305–313.","ista":"Jayasree A, Salava H, Nodzynski T, Sravankumar T. 2024.Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis thaliana Protoplasts from Leaf. In: Plant Functional Genomics. Methods in Molecular Biology, vol. 2787, 305–313.","chicago":"Jayasree, Aswathy, Hymavathi Salava, Tomasz Nodzynski, and Thula Sravankumar. “Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis Thaliana Protoplasts from Leaf.” In <i>Plant Functional Genomics</i>, edited by Fatemeh Maghuly, 2787:305–13. MIMB. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-1-0716-3778-4_21\">https://doi.org/10.1007/978-1-0716-3778-4_21</a>.","mla":"Jayasree, Aswathy, et al. “Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis Thaliana Protoplasts from Leaf.” <i>Plant Functional Genomics</i>, edited by Fatemeh Maghuly, vol. 2787, Springer Nature, 2024, pp. 305–13, doi:<a href=\"https://doi.org/10.1007/978-1-0716-3778-4_21\">10.1007/978-1-0716-3778-4_21</a>.","ama":"Jayasree A, Salava H, Nodzynski T, Sravankumar T. Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis thaliana Protoplasts from Leaf. In: Maghuly F, ed. <i>Plant Functional Genomics</i>. Vol 2787. MIMB. Springer Nature; 2024:305-313. doi:<a href=\"https://doi.org/10.1007/978-1-0716-3778-4_21\">10.1007/978-1-0716-3778-4_21</a>","short":"A. Jayasree, H. Salava, T. Nodzynski, T. Sravankumar, in:, F. Maghuly (Ed.), Plant Functional Genomics, Springer Nature, 2024, pp. 305–313.","apa":"Jayasree, A., Salava, H., Nodzynski, T., &#38; Sravankumar, T. (2024). Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis thaliana Protoplasts from Leaf. In F. Maghuly (Ed.), <i>Plant Functional Genomics</i> (Vol. 2787, pp. 305–313). Springer Nature. <a href=\"https://doi.org/10.1007/978-1-0716-3778-4_21\">https://doi.org/10.1007/978-1-0716-3778-4_21</a>"},"page":"305-313","alternative_title":["Methods in Molecular Biology"],"publication_status":"published","status":"public","series_title":"MIMB","month":"04","oa_version":"None","quality_controlled":"1","doi":"10.1007/978-1-0716-3778-4_21","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"JiFr"}],"abstract":[{"text":"Bimolecular fluorescence complementation (BiFC) is a powerful tool for studying protein-protein interactions in living cells. By fusing interacting proteins to fluorescent protein fragments, BiFC allows visualization of spatial localization patterns of protein complexes. This method has been adapted to a variety of expression systems in different organisms and is widely used to study protein interactions in plant cells. The Agrobacterium-mediated transient expression protocol for BiFC assays in Nicotiana benthamiana (N. benthamiana) leaf cells is widely used, but in this chapter, a method for BiFC assay using Arabidopsis thaliana protoplasts is presented.","lang":"eng"}],"external_id":{"pmid":["38656499"]},"acknowledgement":"Special thanks to Dr. Marta Zwiewka for the support. Thanks to the Czech Science Foundation GA 20-20860Y for financial aid and support of A.S.S., respectively. Thanks go to Core Facility Cellular Imaging (CELLIM), and Plant Sciences Core Facility of CEITEC Masaryk University is acknowledged for the technical support.","publication_identifier":{"eissn":["1940-6029"],"isbn":["9781071637777"]},"date_updated":"2024-05-06T06:39:10Z","year":"2024","publication":"Plant Functional Genomics","date_created":"2024-05-05T22:01:04Z","_id":"15361","type":"book_chapter","intvolume":"      2787","title":"Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis thaliana Protoplasts from Leaf","article_processing_charge":"No","date_published":"2024-04-25T00:00:00Z","editor":[{"first_name":"Fatemeh","full_name":"Maghuly, Fatemeh","last_name":"Maghuly"}],"pmid":1,"language":[{"iso":"eng"}]},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"department":[{"_id":"FyKo"}],"abstract":[{"lang":"eng","text":"Constitutional heterozygous pathogenic variants in the exonuclease domain of POLE and POLD1, which affect the proofreading activity of the corresponding polymerases, cause a cancer predisposition syndrome characterized by increased risk of gastrointestinal polyposis, colorectal cancer, endometrial cancer and other tumor types. The generally accepted explanation for the connection between the disruption of the proofreading activity of polymerases epsilon and delta and cancer development is through an increase in the somatic mutation rate. Here we studied an extended family with multiple members heterozygous for the pathogenic POLD1 variant c.1421T>C p.(Leu474Pro), which segregates with the polyposis and cancer phenotypes. Through the analysis of mutational patterns of patient-derived fibroblasts colonies and de novo mutations obtained by parent-offspring comparisons, we concluded that heterozygous POLD1 L474P just subtly increases the somatic and germline mutation burden. In contrast, tumors developed in individuals with a heterozygous mutation in the exonuclease domain of POLD1, including L474P, have an extremely high mutation rate (>100 mut/Mb) associated with signature SBS10d. We solved this contradiction through the observation that tumorigenesis involves somatic inactivation of the wildtype POLD1 allele. These results imply that exonuclease deficiency of polymerase delta has a recessive effect on mutation rate."}],"external_id":{"pmid":["38658779"],"isi":["001207703200001"]},"publication_identifier":{"issn":["1018-4813"],"eissn":["1476-5438"]},"acknowledgement":"This study was funded by the Spanish Ministry of Science and Innovation (Agencia Estatal de Investigación), co-funded by FEDER funds a way to build Europe [PID2020-112595RB-I00 (LV)], Instituto de Salud Carlos III [CIBERONC CB16/12/00234 (LV); ISCIII-AES-2017 PI17/01082 (JLS), PMP22/00064], Government of Catalonia [AGAUR 2021SGR01112, CERCA Program for institutional support (LV)], Scientific Foundation Asociación Española Contra el Cáncer [AECC Investigador (MT)], Austrian Science Fund FWF [Grant Agreement # I5127-B (FK)], German Research Foundation DFG [Grant Agreement # 429960716 (FK)], and ERC Consolidator [Grant Agreement # 771209 ChrFL (FK)].","date_created":"2024-05-05T22:01:04Z","publication":"European Journal of Human Genetics","date_updated":"2026-04-15T08:51:09Z","year":"2024","_id":"15362","type":"journal_article","has_accepted_license":"1","intvolume":"        32","title":"Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells","article_processing_charge":"No","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"pmid":1,"date_published":"2024-07-01T00:00:00Z","OA_type":"hybrid","file_date_updated":"2025-01-09T09:21:25Z","language":[{"iso":"eng"}],"publisher":"Springer Nature","project":[{"_id":"9B767A34-BA93-11EA-9121-9846C619BF3A","grant_number":"429960716","name":"Evolution of Sensorimotor Transformation Across Diptera"},{"name":"Characterizing the fitness landscape on population and global scales","_id":"26580278-B435-11E9-9278-68D0E5697425","grant_number":"771209","call_identifier":"H2020"},{"_id":"34e076d6-11ca-11ed-8bc3-aec76c41a181","grant_number":"I05127","name":"Evolutionary analysis of gene regulation"}],"volume":32,"author":[{"first_name":"Maria A.","last_name":"Andrianova","full_name":"Andrianova, Maria A."},{"last_name":"Seplyarskiy","full_name":"Seplyarskiy, Vladimir B.","first_name":"Vladimir B."},{"full_name":"Terradas, Mariona","last_name":"Terradas","first_name":"Mariona"},{"first_name":"Ana Beatriz","last_name":"Sánchez-Heras","full_name":"Sánchez-Heras, Ana Beatriz"},{"first_name":"Pilar","full_name":"Mur, Pilar","last_name":"Mur"},{"first_name":"José Luis","full_name":"Soto, José Luis","last_name":"Soto"},{"first_name":"Gemma","last_name":"Aiza","full_name":"Aiza, Gemma"},{"first_name":"Emma","full_name":"Borràs, Emma","last_name":"Borràs"},{"orcid":"0000-0001-8243-4694","first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","last_name":"Kondrashov","full_name":"Kondrashov, Fyodor"},{"first_name":"Alexey S.","last_name":"Kondrashov","full_name":"Kondrashov, Alexey S."},{"last_name":"Bazykin","full_name":"Bazykin, Georgii A.","first_name":"Georgii A."},{"first_name":"Laura","full_name":"Valle, Laura","last_name":"Valle"}],"day":"01","ec_funded":1,"scopus_import":"1","file":[{"access_level":"open_access","file_size":3060724,"relation":"main_file","file_name":"2024_EJHG_Andrianova.pdf","file_id":"18799","date_updated":"2025-01-09T09:21:25Z","date_created":"2025-01-09T09:21:25Z","content_type":"application/pdf","creator":"dernst","success":1,"checksum":"e45fc987f4e9ebafdd0ec4f0e9027de4"}],"citation":{"ieee":"M. A. Andrianova <i>et al.</i>, “Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells,” <i>European Journal of Human Genetics</i>, vol. 32. Springer Nature, pp. 837–845, 2024.","ama":"Andrianova MA, Seplyarskiy VB, Terradas M, et al. Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells. <i>European Journal of Human Genetics</i>. 2024;32:837-845. doi:<a href=\"https://doi.org/10.1038/s41431-024-01598-8\">10.1038/s41431-024-01598-8</a>","mla":"Andrianova, Maria A., et al. “Discovery of Recessive Effect of Human Polymerase δ Proofreading Deficiency through Mutational Analysis of POLD1-Mutated Normal and Cancer Cells.” <i>European Journal of Human Genetics</i>, vol. 32, Springer Nature, 2024, pp. 837–45, doi:<a href=\"https://doi.org/10.1038/s41431-024-01598-8\">10.1038/s41431-024-01598-8</a>.","ista":"Andrianova MA, Seplyarskiy VB, Terradas M, Sánchez-Heras AB, Mur P, Soto JL, Aiza G, Borràs E, Kondrashov F, Kondrashov AS, Bazykin GA, Valle L. 2024. Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells. European Journal of Human Genetics. 32, 837–845.","chicago":"Andrianova, Maria A., Vladimir B. Seplyarskiy, Mariona Terradas, Ana Beatriz Sánchez-Heras, Pilar Mur, José Luis Soto, Gemma Aiza, et al. “Discovery of Recessive Effect of Human Polymerase δ Proofreading Deficiency through Mutational Analysis of POLD1-Mutated Normal and Cancer Cells.” <i>European Journal of Human Genetics</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41431-024-01598-8\">https://doi.org/10.1038/s41431-024-01598-8</a>.","apa":"Andrianova, M. A., Seplyarskiy, V. B., Terradas, M., Sánchez-Heras, A. B., Mur, P., Soto, J. L., … Valle, L. (2024). Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells. <i>European Journal of Human Genetics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41431-024-01598-8\">https://doi.org/10.1038/s41431-024-01598-8</a>","short":"M.A. Andrianova, V.B. Seplyarskiy, M. Terradas, A.B. Sánchez-Heras, P. Mur, J.L. Soto, G. Aiza, E. Borràs, F. Kondrashov, A.S. Kondrashov, G.A. Bazykin, L. Valle, European Journal of Human Genetics 32 (2024) 837–845."},"isi":1,"publication_status":"published","page":"837-845","status":"public","ddc":["570"],"month":"07","article_type":"original","oa_version":"Published Version","doi":"10.1038/s41431-024-01598-8","quality_controlled":"1","OA_place":"publisher"},{"scopus_import":"1","publication_status":"published","citation":{"ieee":"S. Babkin, A. P. Higginbotham, and M. Serbyn, “Proximity-induced gapless superconductivity in two-dimensional Rashba semiconductor in magnetic field,” <i>SciPost Physics</i>, vol. 16, no. 5. SciPost Foundation, 2024.","mla":"Babkin, Serafim, et al. “Proximity-Induced Gapless Superconductivity in Two-Dimensional Rashba Semiconductor in Magnetic Field.” <i>SciPost Physics</i>, vol. 16, no. 5, 115, SciPost Foundation, 2024, doi:<a href=\"https://doi.org/10.21468/scipostphys.16.5.115\">10.21468/scipostphys.16.5.115</a>.","chicago":"Babkin, Serafim, Andrew P Higginbotham, and Maksym Serbyn. “Proximity-Induced Gapless Superconductivity in Two-Dimensional Rashba Semiconductor in Magnetic Field.” <i>SciPost Physics</i>. SciPost Foundation, 2024. <a href=\"https://doi.org/10.21468/scipostphys.16.5.115\">https://doi.org/10.21468/scipostphys.16.5.115</a>.","ama":"Babkin S, Higginbotham AP, Serbyn M. Proximity-induced gapless superconductivity in two-dimensional Rashba semiconductor in magnetic field. <i>SciPost Physics</i>. 2024;16(5). doi:<a href=\"https://doi.org/10.21468/scipostphys.16.5.115\">10.21468/scipostphys.16.5.115</a>","ista":"Babkin S, Higginbotham AP, Serbyn M. 2024. Proximity-induced gapless superconductivity in two-dimensional Rashba semiconductor in magnetic field. SciPost Physics. 16(5), 115.","apa":"Babkin, S., Higginbotham, A. P., &#38; Serbyn, M. (2024). Proximity-induced gapless superconductivity in two-dimensional Rashba semiconductor in magnetic field. <i>SciPost Physics</i>. SciPost Foundation. <a href=\"https://doi.org/10.21468/scipostphys.16.5.115\">https://doi.org/10.21468/scipostphys.16.5.115</a>","short":"S. Babkin, A.P. Higginbotham, M. Serbyn, SciPost Physics 16 (2024)."},"file":[{"creator":"dernst","success":1,"checksum":"f999204856417dcf5a736ac8df432b96","relation":"main_file","access_level":"open_access","file_size":2733685,"file_name":"2024_SciPostPhys_Babkin.pdf","date_created":"2024-05-07T12:58:47Z","file_id":"15369","date_updated":"2024-05-07T12:58:47Z","content_type":"application/pdf"}],"isi":1,"volume":16,"publisher":"SciPost Foundation","project":[{"name":"Protected states of quantum matter","_id":"eb9b30ac-77a9-11ec-83b8-871f581d53d2"},{"name":"Center for Correlated Quantum Materials and Solid State Quantum Systems:  Probing topology in circuits and quantum materials","_id":"34a7f947-11ca-11ed-8bc3-c5dc2bbaae25","grant_number":"F8609"}],"day":"01","author":[{"full_name":"Babkin, Serafim","last_name":"Babkin","orcid":"0009-0003-7382-8036","id":"41e64307-6672-11ee-b9ad-cc7a0075a479","first_name":"Serafim"},{"last_name":"Higginbotham","full_name":"Higginbotham, Andrew P","orcid":"0000-0003-2607-2363","first_name":"Andrew P","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym","full_name":"Serbyn, Maksym","last_name":"Serbyn"}],"doi":"10.21468/scipostphys.16.5.115","quality_controlled":"1","article_number":"115","ddc":["530"],"issue":"5","status":"public","oa_version":"Published Version","article_type":"original","month":"05","external_id":{"arxiv":["2311.09347"],"isi":["001215855200002"]},"abstract":[{"text":"Two-dimensional semiconductor-superconductor heterostructures form the foundation of numerous nanoscale physical systems. However, measuring the properties of such heterostructures, and characterizing the semiconductor in-situ is challenging. A recent experimental study by [Phys. Rev. Lett. 128, 107701 (2022)] was able to probe the semiconductor within the heterostructure using microwave measurements of the superfluid density. This work revealed a rapid depletion of superfluid density in semiconductor, caused by the in-plane magnetic field which in presence of spin-orbit coupling creates so-called Bogoliubov Fermi surfaces. The experimental work used a simplified theoretical model that neglected the presence of non-magnetic disorder in the semiconductor, hence describing the data only qualitatively. Motivated by experiments, we introduce a theoretical model describing a disordered semiconductor with strong spin-orbit coupling that is proximitized by a superconductor. Our model provides specific predictions for the density of states and superfluid density. Presence of disorder leads to the emergence of a gapless superconducting phase, that may be viewed as a manifestation of Bogoliubov Fermi surface. When applied to real experimental data, our model showcases excellent quantitative agreement, enabling the extraction of material parameters such as mean free path and mobility, and estimating g-tensor after taking into account the orbital contribution of magnetic field. Our model can be used to probe in-situ parameters of other superconductor-semiconductor heterostructures and can be further extended to give access to transport properties.","lang":"eng"}],"date_updated":"2026-06-03T07:16:00Z","year":"2024","date_created":"2024-05-06T09:02:18Z","publication":"SciPost Physics","acknowledgement":"We acknowledge useful discussions with M. Geier, A. Levchenko, B. Ramshaw, T. Scaffidi, and\r\nJ. Shabani. This research was funded by the Austrian Science Fund (FWF) F 86.\r\nFor the purpose of open access, authors have applied a CC BY public copyright licence to any\r\nAuthor Accepted Manuscript version arising from this submission. MS acknowledges hospitality of KITP supported in part by the National Science Foundation under Grants No. NSF\r\nPHY-1748958 and PHY-2309135. APH acknowledges the support of the NOMIS foundation.","arxiv":1,"publication_identifier":{"issn":["2542-4653"]},"oa":1,"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"MaSe"},{"_id":"AnHi"}],"date_published":"2024-05-01T00:00:00Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Proximity-induced gapless superconductivity in two-dimensional Rashba semiconductor in magnetic field","article_processing_charge":"Yes","file_date_updated":"2024-05-07T12:58:47Z","language":[{"iso":"eng"}],"has_accepted_license":"1","type":"journal_article","_id":"15367","intvolume":"        16"},{"external_id":{"pmid":["38688943"]},"abstract":[{"text":"CRISPR-Cas9 is a powerful tool for genome editing, but the strict requirement for an NGG protospacer-adjacent motif (PAM) sequence immediately next to the DNA target limits the number of editable genes. Recently developed Cas9 variants have been engineered with relaxed PAM requirements, including SpG-Cas9 (SpG) and the nearly PAM-less SpRY-Cas9 (SpRY). However, the molecular mechanisms of how SpRY recognizes all potential PAM sequences remains unclear. Here, we combine structural and biochemical approaches to determine how SpRY interrogates DNA and recognizes target sites. Divergent PAM sequences can be accommodated through conformational flexibility within the PAM-interacting region, which facilitates tight binding to off-target DNA sequences. Nuclease activation occurs ~1000-fold slower than for Streptococcus pyogenes Cas9, enabling us to directly visualize multiple on-pathway intermediate states. Experiments with SpG position it as an intermediate enzyme between Cas9 and SpRY. Our findings shed light on the molecular mechanisms of PAMless genome editing.","lang":"eng"}],"year":"2024","date_updated":"2025-05-14T09:33:21Z","publication":"Nature Communications","date_created":"2024-05-12T22:01:00Z","acknowledgement":"We thank I. Stohkendl in the Taylor group for insightful discussions. This work was supported in part by Welch Foundation grants F-1808 (to I.J.F.), and F-1938 (to D.W.T.), the National Institutes of Health R01GM124141 (to I.J.F.), R01AI110577 (to K.A.J.), and R35GM138348 (to D.W.T.), and a Robert J. Kleberg, Jr. and Helen C. Kleberg Foundation Medical Research Grant (to D.W.T.). The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.","publication_identifier":{"eissn":["2041-1723"]},"oa":1,"corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"JaBr"}],"date_published":"2024-04-30T00:00:00Z","pmid":1,"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"Yes","title":"Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9","file_date_updated":"2024-05-13T11:46:19Z","language":[{"iso":"eng"}],"has_accepted_license":"1","type":"journal_article","_id":"15372","intvolume":"        15","scopus_import":"1","DOAJ_listed":"1","publication_status":"published","citation":{"ieee":"G. N. Hibshman <i>et al.</i>, “Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9,” <i>Nature Communications</i>, vol. 15. Springer Nature, 2024.","mla":"Hibshman, Grace N., et al. “Unraveling the Mechanisms of PAMless DNA Interrogation by SpRY-Cas9.” <i>Nature Communications</i>, vol. 15, 3663, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1038/s41467-024-47830-3\">10.1038/s41467-024-47830-3</a>.","ama":"Hibshman GN, Bravo JPK, Hooper MM, et al. Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. <i>Nature Communications</i>. 2024;15. doi:<a href=\"https://doi.org/10.1038/s41467-024-47830-3\">10.1038/s41467-024-47830-3</a>","ista":"Hibshman GN, Bravo JPK, Hooper MM, Dangerfield TL, Zhang H, Finkelstein IJ, Johnson KA, Taylor DW. 2024. Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nature Communications. 15, 3663.","chicago":"Hibshman, Grace N., Jack Peter Kelly Bravo, Matthew M. Hooper, Tyler L. Dangerfield, Hongshan Zhang, Ilya J. Finkelstein, Kenneth A. Johnson, and David W. Taylor. “Unraveling the Mechanisms of PAMless DNA Interrogation by SpRY-Cas9.” <i>Nature Communications</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41467-024-47830-3\">https://doi.org/10.1038/s41467-024-47830-3</a>.","short":"G.N. Hibshman, J.P.K. Bravo, M.M. Hooper, T.L. Dangerfield, H. Zhang, I.J. Finkelstein, K.A. Johnson, D.W. Taylor, Nature Communications 15 (2024).","apa":"Hibshman, G. N., Bravo, J. P. K., Hooper, M. M., Dangerfield, T. L., Zhang, H., Finkelstein, I. J., … Taylor, D. W. (2024). Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-024-47830-3\">https://doi.org/10.1038/s41467-024-47830-3</a>"},"file":[{"creator":"dernst","success":1,"checksum":"509c65919067a03ef8ad65c7192cd860","relation":"main_file","access_level":"open_access","file_size":7477013,"file_name":"2024_NatureComm_Hibshman.pdf","date_created":"2024-05-13T11:46:19Z","file_id":"15386","date_updated":"2024-05-13T11:46:19Z","content_type":"application/pdf"}],"volume":15,"publisher":"Springer Nature","day":"30","author":[{"first_name":"Grace N.","last_name":"Hibshman","full_name":"Hibshman, Grace N."},{"orcid":"0000-0003-0456-0753","id":"96aecfa5-8931-11ee-af30-aa6a5d6eee0e","first_name":"Jack Peter Kelly","last_name":"Bravo","full_name":"Bravo, Jack Peter Kelly"},{"first_name":"Matthew M.","last_name":"Hooper","full_name":"Hooper, Matthew M."},{"full_name":"Dangerfield, Tyler L.","last_name":"Dangerfield","first_name":"Tyler L."},{"first_name":"Hongshan","last_name":"Zhang","full_name":"Zhang, Hongshan"},{"first_name":"Ilya J.","full_name":"Finkelstein, Ilya J.","last_name":"Finkelstein"},{"last_name":"Johnson","full_name":"Johnson, Kenneth A.","first_name":"Kenneth A."},{"full_name":"Taylor, David W.","last_name":"Taylor","first_name":"David W."}],"quality_controlled":"1","doi":"10.1038/s41467-024-47830-3","article_number":"3663","ddc":["570"],"status":"public","oa_version":"Published Version","article_type":"original","month":"04"},{"citation":{"short":"M. Wirth, Journal of Functional Analysis 287 (2024).","apa":"Wirth, M. (2024). Christensen–Evans theorem and extensions of GNS-symmetric quantum Markov semigroups. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2024.110475\">https://doi.org/10.1016/j.jfa.2024.110475</a>","chicago":"Wirth, Melchior. “Christensen–Evans Theorem and Extensions of GNS-Symmetric Quantum Markov Semigroups.” <i>Journal of Functional Analysis</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.jfa.2024.110475\">https://doi.org/10.1016/j.jfa.2024.110475</a>.","ista":"Wirth M. 2024. Christensen–Evans theorem and extensions of GNS-symmetric quantum Markov semigroups. Journal of Functional Analysis. 287(3), 110475.","mla":"Wirth, Melchior. “Christensen–Evans Theorem and Extensions of GNS-Symmetric Quantum Markov Semigroups.” <i>Journal of Functional Analysis</i>, vol. 287, no. 3, 110475, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.jfa.2024.110475\">10.1016/j.jfa.2024.110475</a>.","ama":"Wirth M. Christensen–Evans theorem and extensions of GNS-symmetric quantum Markov semigroups. <i>Journal of Functional Analysis</i>. 2024;287(3). doi:<a href=\"https://doi.org/10.1016/j.jfa.2024.110475\">10.1016/j.jfa.2024.110475</a>","ieee":"M. Wirth, “Christensen–Evans theorem and extensions of GNS-symmetric quantum Markov semigroups,” <i>Journal of Functional Analysis</i>, vol. 287, no. 3. Elsevier, 2024."},"file":[{"content_type":"application/pdf","date_updated":"2025-01-09T09:33:56Z","file_id":"18802","date_created":"2025-01-09T09:33:56Z","file_name":"2024_JourFunctAnalysis_Wirth.pdf","relation":"main_file","access_level":"open_access","file_size":503148,"checksum":"657c9f77dd30bb31ce43a591f58126a2","success":1,"creator":"dernst"}],"isi":1,"publication_status":"published","scopus_import":"1","author":[{"last_name":"Wirth","full_name":"Wirth, Melchior","id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","first_name":"Melchior","orcid":"0000-0002-0519-4241"}],"day":"01","publisher":"Elsevier","volume":287,"OA_place":"publisher","quality_controlled":"1","doi":"10.1016/j.jfa.2024.110475","month":"08","article_type":"original","oa_version":"Published Version","status":"public","ddc":["510"],"issue":"3","article_number":"110475","publication_identifier":{"eissn":["1096-0783"],"issn":["0022-1236"]},"publication":"Journal of Functional Analysis","date_created":"2024-05-12T22:01:01Z","year":"2024","date_updated":"2025-09-08T07:24:07Z","abstract":[{"lang":"eng","text":"In this article we prove a refined version of the Christensen–Evans theorem for generators of uniformly continuous GNS-symmetric quantum Markov semigroups. We use this result to show the existence of GNS-symmetric extensions of GNS-symmetric quantum Markov semigroups. In particular, this implies that the generators of GNS-symmetric quantum Markov semigroups on finite-dimensional von Neumann algebra can be written in the form specified by Alicki's theorem."}],"external_id":{"isi":["001237916800001"]},"department":[{"_id":"JaMa"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","oa":1,"OA_type":"hybrid","language":[{"iso":"eng"}],"file_date_updated":"2025-01-09T09:33:56Z","title":"Christensen–Evans theorem and extensions of GNS-symmetric quantum Markov semigroups","article_processing_charge":"Yes (via OA deal)","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2024-08-01T00:00:00Z","intvolume":"       287","_id":"15373","type":"journal_article","has_accepted_license":"1"},{"doi":"10.1016/j.celrep.2024.114195","quality_controlled":"1","ddc":["580"],"issue":"5","article_number":"114195","status":"public","oa_version":"Published Version","month":"05","article_type":"original","scopus_import":"1","publication_status":"published","file":[{"success":1,"checksum":"a06bb85be4fc765c51554d27ee2da802","creator":"dernst","date_created":"2024-05-13T12:11:22Z","date_updated":"2024-05-13T12:11:22Z","file_id":"15387","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_size":5698598,"file_name":"2024_CellReports_Adamowski.pdf"}],"citation":{"chicago":"Adamowski, Maciek, Marek Randuch, Ivana Matijevic, Madhumitha Narasimhan, and Jiří Friml. “SH3Ps Recruit Auxilin-like Vesicle Uncoating Factors for Clathrin-Mediated Endocytosis.” <i>Cell Reports</i>. Cell Press, 2024. <a href=\"https://doi.org/10.1016/j.celrep.2024.114195\">https://doi.org/10.1016/j.celrep.2024.114195</a>.","ama":"Adamowski M, Randuch M, Matijevic I, Narasimhan M, Friml J. SH3Ps recruit auxilin-like vesicle uncoating factors for clathrin-mediated endocytosis. <i>Cell Reports</i>. 2024;43(5). doi:<a href=\"https://doi.org/10.1016/j.celrep.2024.114195\">10.1016/j.celrep.2024.114195</a>","ista":"Adamowski M, Randuch M, Matijevic I, Narasimhan M, Friml J. 2024. SH3Ps recruit auxilin-like vesicle uncoating factors for clathrin-mediated endocytosis. Cell Reports. 43(5), 114195.","mla":"Adamowski, Maciek, et al. “SH3Ps Recruit Auxilin-like Vesicle Uncoating Factors for Clathrin-Mediated Endocytosis.” <i>Cell Reports</i>, vol. 43, no. 5, 114195, Cell Press, 2024, doi:<a href=\"https://doi.org/10.1016/j.celrep.2024.114195\">10.1016/j.celrep.2024.114195</a>.","short":"M. Adamowski, M. Randuch, I. Matijevic, M. Narasimhan, J. Friml, Cell Reports 43 (2024).","apa":"Adamowski, M., Randuch, M., Matijevic, I., Narasimhan, M., &#38; Friml, J. (2024). SH3Ps recruit auxilin-like vesicle uncoating factors for clathrin-mediated endocytosis. <i>Cell Reports</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.celrep.2024.114195\">https://doi.org/10.1016/j.celrep.2024.114195</a>","ieee":"M. Adamowski, M. Randuch, I. Matijevic, M. Narasimhan, and J. Friml, “SH3Ps recruit auxilin-like vesicle uncoating factors for clathrin-mediated endocytosis,” <i>Cell Reports</i>, vol. 43, no. 5. Cell Press, 2024."},"isi":1,"volume":43,"publisher":"Cell Press","project":[{"name":"Molecular mechanisms of endocytic cargo recognition in plants","call_identifier":"FWF","grant_number":"I03630","_id":"26538374-B435-11E9-9278-68D0E5697425"}],"day":"28","author":[{"orcid":"0000-0001-6463-5257","first_name":"Maciek","id":"45F536D2-F248-11E8-B48F-1D18A9856A87","last_name":"Adamowski","full_name":"Adamowski, Maciek"},{"last_name":"Randuch","full_name":"Randuch, Marek","id":"6ac4636d-15b2-11ec-abd3-fb8df79972ae","first_name":"Marek"},{"full_name":"Matijevic, Ivana","last_name":"Matijevic","id":"83c17ce3-15b2-11ec-abd3-f486545870bd","first_name":"Ivana"},{"first_name":"Madhumitha","id":"44BF24D0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8600-0671","full_name":"Narasimhan, Madhumitha","last_name":"Narasimhan"},{"full_name":"Friml, Jiří","last_name":"Friml","orcid":"0000-0002-8302-7596","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"pmid":1,"date_published":"2024-05-28T00:00:00Z","title":"SH3Ps recruit auxilin-like vesicle uncoating factors for clathrin-mediated endocytosis","article_processing_charge":"Yes","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"file_date_updated":"2024-05-13T12:11:22Z","has_accepted_license":"1","_id":"15374","type":"journal_article","intvolume":"        43","external_id":{"pmid":["38717900"],"isi":["001240362800001"]},"abstract":[{"lang":"eng","text":"Clathrin-mediated endocytosis (CME) is an essential process of cargo uptake operating in all eukaryotes. In animals and yeast, BAR-SH3 domain proteins, endophilins and amphiphysins, function at the conclusion of CME to recruit factors for vesicle scission and uncoating. Arabidopsis thaliana contains the BAR-SH3 domain proteins SH3P1–SH3P3, but their role is poorly understood. Here, we identify SH3Ps as functional homologs of endophilin/amphiphysin. SH3P1–SH3P3 bind to discrete foci at the plasma membrane (PM), and SH3P2 recruits late to a subset of clathrin-coated pits. The SH3P2 PM recruitment pattern is nearly identical to its interactor, a putative uncoating factor, AUXILIN-LIKE1. Notably, SH3P1–SH3P3 are required for most of AUXILIN-LIKE1 recruitment to the PM. This indicates a plant-specific modification of CME, where BAR-SH3 proteins recruit auxilin-like uncoating factors rather than the uncoating phosphatases, synaptojanins. SH3P1–SH3P3 act redundantly in overall CME with the plant-specific endocytic adaptor TPLATE complex but not due to an SH3 domain in its TASH3 subunit."}],"publication":"Cell Reports","date_created":"2024-05-12T22:01:01Z","year":"2024","date_updated":"2025-09-08T07:23:07Z","publication_identifier":{"eissn":["2211-1247"]},"acknowledgement":"The authors wish to acknowledge Dr. Daniel van Damme for mRuby3/pDONRP2rP3 and Prof. Qi-Jun Chen for sharing plasmids used for CRISPR-Cas9 mutagenesis. This work was supported by the Austrian Science Fund (FWF): I 3630-B25.","corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"department":[{"_id":"JiFr"},{"_id":"MaLo"}]},{"department":[{"_id":"XiFe"}],"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"publication_identifier":{"eissn":["1532-298X"]},"acknowledgement":"This work was funded by ISTA core support (Y.Y. and X.F.) and grants from the National Natural Science Foundation of China (31871443 to L.W. and P.L.; 32100417 to L.W.).\r\nWe thank the ISTA Imaging and Optics Facility for assistance with microscopy and the ISTA Scientific Computing Facility for high-performance computing resources.","publication":"The Plant Cell","date_created":"2024-05-12T22:01:01Z","date_updated":"2025-09-08T07:21:17Z","year":"2024","abstract":[{"lang":"eng","text":"In the eukaryotic nucleus, heterochromatin forms highly condensed, visible foci known as heterochromatin foci (HF). These HF are enriched with linker histone H1, a key player in heterochromatin condensation and silencing. However, it is unknown how H1 aggregates HF and condenses heterochromatin. In this study, we established that H1 facilitates heterochromatin condensation by enhancing inter- and intrachromosomal interactions between and within heterochromatic regions of the Arabidopsis (Arabidopsis thaliana) genome. We demonstrated that H1 drives HF formation via phase separation, which requires its C-terminal intrinsically disordered region (C-IDR). A truncated H1 lacking the C-IDR fails to form foci or recover HF in the h1 mutant background, whereas C-IDR with a short stretch of the globular domain (18 out of 71 amino acids) is sufficient to rescue both defects. In addition, C-IDR is essential for H1's roles in regulating nucleosome repeat length and DNA methylation in Arabidopsis, indicating that phase separation capability is required for chromatin functions of H1. Our data suggest that bacterial H1-like proteins, which have been shown to condense DNA, are intrinsically disordered and capable of mediating phase separation. Therefore, we propose that phase separation mediated by H1 or H1-like proteins may represent an ancient mechanism for condensing chromatin and DNA."}],"external_id":{"isi":["001180817000001"],"pmid":["38309957"]},"intvolume":"        36","type":"journal_article","_id":"15375","acknowledged_ssus":[{"_id":"Bio"},{"_id":"ScienComp"}],"has_accepted_license":"1","OA_type":"hybrid","language":[{"iso":"eng"}],"file_date_updated":"2025-04-23T07:43:12Z","article_processing_charge":"Yes (via OA deal)","title":"Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"pmid":1,"date_published":"2024-05-01T00:00:00Z","author":[{"full_name":"He, Shengbo","last_name":"He","first_name":"Shengbo"},{"id":"318e643b-8b61-11ed-b69e-aafa103ec8dd","first_name":"Yiming","last_name":"Yu","full_name":"Yu, Yiming"},{"last_name":"Wang","full_name":"Wang, Liang","first_name":"Liang"},{"first_name":"Jingyi","last_name":"Zhang","full_name":"Zhang, Jingyi"},{"first_name":"Zhengyong","full_name":"Bai, Zhengyong","last_name":"Bai"},{"first_name":"Guohong","last_name":"Li","full_name":"Li, Guohong"},{"last_name":"Li","full_name":"Li, Pilong","first_name":"Pilong"},{"last_name":"Feng","full_name":"Feng, Xiaoqi","orcid":"0000-0002-4008-1234","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","first_name":"Xiaoqi"}],"day":"01","publisher":"Oxford University Press","volume":36,"citation":{"ieee":"S. He <i>et al.</i>, “Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis,” <i>The Plant Cell</i>, vol. 36, no. 5. Oxford University Press, pp. 1829–1843, 2024.","short":"S. He, Y. Yu, L. Wang, J. Zhang, Z. Bai, G. Li, P. Li, X. Feng, The Plant Cell 36 (2024) 1829–1843.","apa":"He, S., Yu, Y., Wang, L., Zhang, J., Bai, Z., Li, G., … Feng, X. (2024). Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis. <i>The Plant Cell</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/plcell/koae034\">https://doi.org/10.1093/plcell/koae034</a>","ista":"He S, Yu Y, Wang L, Zhang J, Bai Z, Li G, Li P, Feng X. 2024. Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis. The Plant Cell. 36(5), 1829–1843.","chicago":"He, Shengbo, Yiming Yu, Liang Wang, Jingyi Zhang, Zhengyong Bai, Guohong Li, Pilong Li, and Xiaoqi Feng. “Linker Histone H1 Drives Heterochromatin Condensation via Phase Separation in Arabidopsis.” <i>The Plant Cell</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/plcell/koae034\">https://doi.org/10.1093/plcell/koae034</a>.","ama":"He S, Yu Y, Wang L, et al. Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis. <i>The Plant Cell</i>. 2024;36(5):1829-1843. doi:<a href=\"https://doi.org/10.1093/plcell/koae034\">10.1093/plcell/koae034</a>","mla":"He, Shengbo, et al. “Linker Histone H1 Drives Heterochromatin Condensation via Phase Separation in Arabidopsis.” <i>The Plant Cell</i>, vol. 36, no. 5, Oxford University Press, 2024, pp. 1829–43, doi:<a href=\"https://doi.org/10.1093/plcell/koae034\">10.1093/plcell/koae034</a>."},"file":[{"creator":"dernst","checksum":"eed76c848fe3d8fe9a53943181aaa53c","success":1,"file_name":"2024_PlantCell_He.pdf","relation":"main_file","access_level":"open_access","file_size":50791962,"content_type":"application/pdf","date_created":"2025-04-23T07:43:12Z","file_id":"19611","date_updated":"2025-04-23T07:43:12Z"}],"isi":1,"page":"1829-1843","publication_status":"published","scopus_import":"1","month":"05","article_type":"original","oa_version":"Published Version","status":"public","issue":"5","ddc":["580"],"OA_place":"publisher","quality_controlled":"1","doi":"10.1093/plcell/koae034"},{"acknowledgement":"This work was supported in part by the ERC project ERC-2020-AdG 101020093 and by ISF grant no. 1679/21.","publication_identifier":{"isbn":["9783031572555"],"issn":["0302-9743"],"eissn":["1611-3349"]},"arxiv":1,"year":"2024","date_updated":"2025-09-08T07:33:43Z","publication":"30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems","date_created":"2024-05-12T22:01:02Z","abstract":[{"lang":"eng","text":"Sequential decision-making tasks often require satisfaction of multiple, partially-contradictory objectives. Existing approaches are monolithic, where a single policy fulfills all objectives. We present auction-based scheduling, a decentralized framework for multi-objective sequential decision making. Each objective is fulfilled using a separate and independent policy. Composition of policies is performed at runtime, where at each step, the policies simultaneously bid from pre-allocated budgets for the privilege of choosing the next action. The framework allows policies to be independently created, modified, and replaced. We study path planning problems on finite graphs with two temporal objectives and present algorithms to synthesize policies together with bidding policies in a decentralized manner. We consider three categories of decentralized synthesis problems, parameterized by the assumptions that the policies make on each other. We identify a class of assumptions called assume-admissible for which synthesis is always possible for graphs whose every vertex has at most two outgoing edges."}],"external_id":{"isi":["001284187100008"],"arxiv":["2310.11798"]},"department":[{"_id":"ToHe"}],"oa":1,"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file_date_updated":"2024-05-22T07:09:24Z","language":[{"iso":"eng"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"Yes (in subscription journal)","title":"Auction-based scheduling","date_published":"2024-04-05T00:00:00Z","intvolume":"     14572","type":"conference","_id":"15376","has_accepted_license":"1","isi":1,"file":[{"checksum":"dbeb123510997886d11925aedbf9c400","success":1,"creator":"dernst","content_type":"application/pdf","date_created":"2024-05-22T07:09:24Z","file_id":"15414","date_updated":"2024-05-22T07:09:24Z","file_name":"2024_LNCS_Avni.pdf","relation":"main_file","file_size":508191,"access_level":"open_access"}],"citation":{"chicago":"Avni, Guy, Kaushik Mallik, and Suman Sadhukhan. “Auction-Based Scheduling.” In <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>, 14572:153–72. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-57256-2_8\">https://doi.org/10.1007/978-3-031-57256-2_8</a>.","ista":"Avni G, Mallik K, Sadhukhan S. 2024. Auction-based scheduling. 30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 14572, 153–172.","mla":"Avni, Guy, et al. “Auction-Based Scheduling.” <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>, vol. 14572, Springer Nature, 2024, pp. 153–72, doi:<a href=\"https://doi.org/10.1007/978-3-031-57256-2_8\">10.1007/978-3-031-57256-2_8</a>.","ama":"Avni G, Mallik K, Sadhukhan S. Auction-based scheduling. In: <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>. Vol 14572. Springer Nature; 2024:153-172. doi:<a href=\"https://doi.org/10.1007/978-3-031-57256-2_8\">10.1007/978-3-031-57256-2_8</a>","apa":"Avni, G., Mallik, K., &#38; Sadhukhan, S. (2024). Auction-based scheduling. In <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i> (Vol. 14572, pp. 153–172). Luxembourg City, Luxembourg: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-57256-2_8\">https://doi.org/10.1007/978-3-031-57256-2_8</a>","short":"G. Avni, K. Mallik, S. Sadhukhan, in:, 30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, Springer Nature, 2024, pp. 153–172.","ieee":"G. Avni, K. Mallik, and S. Sadhukhan, “Auction-based scheduling,” in <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>, Luxembourg City, Luxembourg, 2024, vol. 14572, pp. 153–172."},"page":"153-172","publication_status":"published","alternative_title":["LNCS"],"ec_funded":1,"scopus_import":"1","author":[{"orcid":"0000-0001-5588-8287","id":"463C8BC2-F248-11E8-B48F-1D18A9856A87","first_name":"Guy","full_name":"Avni, Guy","last_name":"Avni"},{"full_name":"Mallik, Kaushik","last_name":"Mallik","orcid":"0000-0001-9864-7475","first_name":"Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598"},{"first_name":"Suman","last_name":"Sadhukhan","full_name":"Sadhukhan, Suman"}],"day":"05","project":[{"grant_number":"101020093","call_identifier":"H2020","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software"}],"publisher":"Springer Nature","volume":14572,"quality_controlled":"1","doi":"10.1007/978-3-031-57256-2_8","month":"04","oa_version":"Published Version","conference":{"end_date":"2024-04-11","start_date":"2024-04-06","name":"TACAS: Tools and Algorithms for the Construction and Analysis of Systems","location":"Luxembourg City, Luxembourg"},"status":"public","ddc":["000"]},{"quality_controlled":"1","doi":"10.1007/978-3-031-57256-2_11","month":"04","oa_version":"Published Version","status":"public","ddc":["000"],"citation":{"apa":"Majumdar, R., Sağlam, I., &#38; Thejaswini, K. S. (2024). Rabin games and colourful universal trees. In <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i> (Vol. 14572, pp. 213–231). Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-57256-2_11\">https://doi.org/10.1007/978-3-031-57256-2_11</a>","short":"R. Majumdar, I. Sağlam, K.S. Thejaswini, in:, 30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, Springer Nature, 2024, pp. 213–231.","chicago":"Majumdar, Rupak, Irmak Sağlam, and K. S. Thejaswini. “Rabin Games and Colourful Universal Trees.” In <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>, 14572:213–31. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-57256-2_11\">https://doi.org/10.1007/978-3-031-57256-2_11</a>.","ista":"Majumdar R, Sağlam I, Thejaswini KS. 2024. Rabin games and colourful universal trees. 30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems. , LNCS, vol. 14572, 213–231.","mla":"Majumdar, Rupak, et al. “Rabin Games and Colourful Universal Trees.” <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>, vol. 14572, Springer Nature, 2024, pp. 213–31, doi:<a href=\"https://doi.org/10.1007/978-3-031-57256-2_11\">10.1007/978-3-031-57256-2_11</a>.","ama":"Majumdar R, Sağlam I, Thejaswini KS. Rabin games and colourful universal trees. In: <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>. Vol 14572. Springer Nature; 2024:213-231. doi:<a href=\"https://doi.org/10.1007/978-3-031-57256-2_11\">10.1007/978-3-031-57256-2_11</a>","ieee":"R. Majumdar, I. Sağlam, and K. S. Thejaswini, “Rabin games and colourful universal trees,” in <i>30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems</i>, 2024, vol. 14572, pp. 213–231."},"file":[{"date_updated":"2024-05-22T07:24:45Z","file_id":"15415","date_created":"2024-05-22T07:24:45Z","content_type":"application/pdf","access_level":"open_access","file_size":462173,"relation":"main_file","file_name":"2024_LNCS_Majumdar.pdf","success":1,"checksum":"492be74f69cd6ea42d38681082d0b521","creator":"dernst"}],"isi":1,"page":"213-231","publication_status":"published","alternative_title":["LNCS"],"ec_funded":1,"scopus_import":"1","author":[{"full_name":"Majumdar, Rupak","last_name":"Majumdar","first_name":"Rupak"},{"last_name":"Sağlam","full_name":"Sağlam, Irmak","first_name":"Irmak"},{"first_name":"K. S.","id":"3807fb92-fdc1-11ee-bb4a-b4d8a431c753","full_name":"Thejaswini, K. S.","last_name":"Thejaswini"}],"day":"06","project":[{"name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","call_identifier":"H2020","grant_number":"101020093"}],"publisher":"Springer Nature","volume":14572,"language":[{"iso":"eng"}],"file_date_updated":"2024-05-22T07:24:45Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Rabin games and colourful universal trees","article_processing_charge":"Yes (in subscription journal)","date_published":"2024-04-06T00:00:00Z","intvolume":"     14572","_id":"15377","type":"conference","has_accepted_license":"1","acknowledgement":"This work is a part of the project VAMOS that has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, grant agreements No 101020093. Rupak Majumdar was partially supported by the DFG project 389792660 TRR 248-CPEC.","publication_identifier":{"isbn":["9783031572555"],"issn":["0302-9743"],"eissn":["1611-3349"]},"arxiv":1,"year":"2024","date_updated":"2025-09-08T07:34:49Z","publication":"30th International Conference on Tools and Algorithms for the Construction and Analysis of Systems","date_created":"2024-05-12T22:01:02Z","abstract":[{"lang":"eng","text":"We provide an algorithmto solve Rabin and Streett games over graphs\r\nwith n vertices,m edges, and k colours that runs in ˜O³mn(k!)1+o(1)´time and\r\nO(nk logk logn) space, where ˜O hides poly-logarithmic factors. Our algorithm\r\nis an improvement by a super quadratic dependence on k! from the currently\r\nbest known run time of O³mn2(k!)2+o(1)´, obtained by converting a Rabin\r\ngameinto a parity game,while simultaneously improving its exponential space\r\nrequirement.\r\nOur main technical ingredient is a characterisation of progress measures for\r\nRabin games using colourful trees and a combinatorial construction of succinctlyrepresented,\r\nuniversal colourful trees. Colourful universal trees are generalisations\r\nof universal trees used by Jurdzi´nski and Lazi´c (2017) to solve parity\r\ngames, as well as of Rabin progress measures of Klarlund and Kozen (1991).\r\nOur algorithm for Rabin games is a progress measure lifting algorithm where\r\nthe lifting is performed on succinct, colourful, universal trees."}],"external_id":{"arxiv":["2401.07548"],"isi":["001284187100011"]},"department":[{"_id":"ToHe"}],"oa":1,"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"oa_version":"Published Version","article_type":"original","month":"09","issue":"9","ddc":["510"],"status":"public","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","OA_place":"publisher","doi":"10.1002/cpa.22201","quality_controlled":"1","day":"01","author":[{"full_name":"Erdös, László","last_name":"Erdös","orcid":"0000-0001-5366-9603","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Hong Chang","id":"dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d","full_name":"Ji, Hong Chang","last_name":"Ji"}],"volume":77,"publisher":"Wiley","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"publication_status":"published","page":"3785-3840","citation":{"ieee":"L. Erdös and H. C. Ji, “Wegner estimate and upper bound on the eigenvalue condition number of non-Hermitian random matrices,” <i>Communications on Pure and Applied Mathematics</i>, vol. 77, no. 9. Wiley, pp. 3785–3840, 2024.","ama":"Erdös L, Ji HC. Wegner estimate and upper bound on the eigenvalue condition number of non-Hermitian random matrices. <i>Communications on Pure and Applied Mathematics</i>. 2024;77(9):3785-3840. doi:<a href=\"https://doi.org/10.1002/cpa.22201\">10.1002/cpa.22201</a>","chicago":"Erdös, László, and Hong Chang Ji. “Wegner Estimate and Upper Bound on the Eigenvalue Condition Number of Non-Hermitian Random Matrices.” <i>Communications on Pure and Applied Mathematics</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/cpa.22201\">https://doi.org/10.1002/cpa.22201</a>.","ista":"Erdös L, Ji HC. 2024. Wegner estimate and upper bound on the eigenvalue condition number of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 77(9), 3785–3840.","mla":"Erdös, László, and Hong Chang Ji. “Wegner Estimate and Upper Bound on the Eigenvalue Condition Number of Non-Hermitian Random Matrices.” <i>Communications on Pure and Applied Mathematics</i>, vol. 77, no. 9, Wiley, 2024, pp. 3785–840, doi:<a href=\"https://doi.org/10.1002/cpa.22201\">10.1002/cpa.22201</a>.","short":"L. Erdös, H.C. Ji, Communications on Pure and Applied Mathematics 77 (2024) 3785–3840.","apa":"Erdös, L., &#38; Ji, H. C. (2024). Wegner estimate and upper bound on the eigenvalue condition number of non-Hermitian random matrices. <i>Communications on Pure and Applied Mathematics</i>. Wiley. <a href=\"https://doi.org/10.1002/cpa.22201\">https://doi.org/10.1002/cpa.22201</a>"},"file":[{"relation":"main_file","file_size":566963,"access_level":"open_access","file_name":"2024_CommPureApplMath_Erdoes.pdf","file_id":"18803","date_updated":"2025-01-09T09:36:41Z","date_created":"2025-01-09T09:36:41Z","content_type":"application/pdf","creator":"dernst","success":1,"checksum":"fbcc9cc7bf274f024e4f4afc9c208f96"}],"isi":1,"scopus_import":"1","ec_funded":1,"intvolume":"        77","has_accepted_license":"1","_id":"15378","type":"journal_article","file_date_updated":"2025-01-09T09:36:41Z","language":[{"iso":"eng"}],"OA_type":"hybrid","date_published":"2024-09-01T00:00:00Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"title":"Wegner estimate and upper bound on the eigenvalue condition number of non-Hermitian random matrices","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"LaEr"}],"oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","year":"2024","date_updated":"2025-09-08T07:25:47Z","publication":"Communications on Pure and Applied Mathematics","date_created":"2024-05-12T22:01:02Z","acknowledgement":"László Erdős is partially supported by ERC Advanced Grant “RMTBeyond” No. 101020331. Hong Chang Ji is supported by ERC Advanced Grant “RMTBeyond” No. 101020331.","publication_identifier":{"issn":["0010-3640"],"eissn":["1097-0312"]},"arxiv":1,"external_id":{"isi":["001217139900001"],"arxiv":["2301.04981"]},"abstract":[{"lang":"eng","text":"We consider N×N non-Hermitian random matrices of the form X+A, where A is a general deterministic matrix and N−−√X consists of independent entries with zero mean, unit variance, and bounded densities. For this ensemble, we prove (i) a Wegner estimate, i.e. that the local density of eigenvalues is bounded by N1+o(1) and (ii) that the expected condition number of any bulk eigenvalue is bounded by N1+o(1); both results are optimal up to the factor No(1). The latter result complements the very recent matching lower bound obtained in [15] (arXiv:2301.03549) and improves the N-dependence of the upper bounds in [5,6,32] (arXiv:1906.11819, arXiv:2005.08930, arXiv:2005.08908). Our main ingredient, a near-optimal lower tail estimate for the small singular values of X+A−z, is of independent interest."}]},{"abstract":[{"lang":"eng","text":"Long-term potentiation (LTP) of excitatory synapses is a leading model to explain the concept of information storage in the brain. Multiple mechanisms contribute to LTP, but central amongst them is an increased sensitivity of the postsynaptic membrane to neurotransmitter release. This sensitivity is predominantly determined by the abundance and localization of AMPA-type glutamate receptors (AMPARs). A combination of AMPAR structural data, super-resolution imaging of excitatory synapses, and an abundance of electrophysiological studies are providing an ever-clearer picture of how AMPARs are recruited and organized at synaptic junctions. Here, we review the latest insights into this process, and discuss how both cytoplasmic and extracellular receptor elements cooperate to tune the AMPAR response at the hippocampal CA1 synapse."}],"external_id":{"isi":["001214545700001"],"pmid":["38693811"]},"publication_identifier":{"issn":["0265-9247"],"eissn":["1521-1878"]},"acknowledgement":"The authors thank Alexander Scrutton and James M. Krieger for comments on the manuscript. The authors also acknowledge Shraddha Nayak for help with Figure 1B design. This work was supported by grants from the Medical Research Council (MC_U105174197), the BBSRC (BB/N002113/1), and the Wellcome Trust (223194/Z/21/Z) to IHG.","publication":"BioEssays","date_created":"2024-05-12T22:01:02Z","year":"2024","date_updated":"2025-09-08T07:25:02Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"department":[{"_id":"PeJo"}],"title":"Tuning synaptic strength by regulation of AMPA glutamate receptor localization","article_processing_charge":"Yes (in subscription journal)","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"pmid":1,"date_published":"2024-07-01T00:00:00Z","OA_type":"hybrid","file_date_updated":"2025-01-09T09:31:05Z","language":[{"iso":"eng"}],"_id":"15379","type":"journal_article","has_accepted_license":"1","intvolume":"        46","scopus_import":"1","file":[{"access_level":"open_access","relation":"main_file","file_size":775825,"file_name":"2024_BioEssays_Stockwell.pdf","file_id":"18801","date_updated":"2025-01-09T09:31:05Z","date_created":"2025-01-09T09:31:05Z","content_type":"application/pdf","creator":"dernst","success":1,"checksum":"dc8be74156657e8aab12a9d613233ee3"}],"citation":{"ieee":"I. Stockwell, J. Watson, and I. H. Greger, “Tuning synaptic strength by regulation of AMPA glutamate receptor localization,” <i>BioEssays</i>, vol. 46, no. 7. Wiley, 2024.","mla":"Stockwell, Imogen, et al. “Tuning Synaptic Strength by Regulation of AMPA Glutamate Receptor Localization.” <i>BioEssays</i>, vol. 46, no. 7, 2400006, Wiley, 2024, doi:<a href=\"https://doi.org/10.1002/bies.202400006\">10.1002/bies.202400006</a>.","ama":"Stockwell I, Watson J, Greger IH. Tuning synaptic strength by regulation of AMPA glutamate receptor localization. <i>BioEssays</i>. 2024;46(7). doi:<a href=\"https://doi.org/10.1002/bies.202400006\">10.1002/bies.202400006</a>","chicago":"Stockwell, Imogen, Jake Watson, and Ingo H. Greger. “Tuning Synaptic Strength by Regulation of AMPA Glutamate Receptor Localization.” <i>BioEssays</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/bies.202400006\">https://doi.org/10.1002/bies.202400006</a>.","ista":"Stockwell I, Watson J, Greger IH. 2024. Tuning synaptic strength by regulation of AMPA glutamate receptor localization. BioEssays. 46(7), 2400006.","short":"I. Stockwell, J. Watson, I.H. Greger, BioEssays 46 (2024).","apa":"Stockwell, I., Watson, J., &#38; Greger, I. H. (2024). Tuning synaptic strength by regulation of AMPA glutamate receptor localization. <i>BioEssays</i>. Wiley. <a href=\"https://doi.org/10.1002/bies.202400006\">https://doi.org/10.1002/bies.202400006</a>"},"isi":1,"publication_status":"published","publisher":"Wiley","volume":46,"author":[{"full_name":"Stockwell, Imogen","last_name":"Stockwell","first_name":"Imogen"},{"full_name":"Watson, Jake","last_name":"Watson","orcid":"0000-0002-8698-3823","first_name":"Jake","id":"63836096-4690-11EA-BD4E-32803DDC885E"},{"first_name":"Ingo H.","full_name":"Greger, Ingo H.","last_name":"Greger"}],"day":"01","quality_controlled":"1","doi":"10.1002/bies.202400006","OA_place":"publisher","status":"public","ddc":["570"],"issue":"7","article_number":" 2400006","month":"07","article_type":"review","oa_version":"Published Version"},{"publication_status":"published","page":"557-578","citation":{"ista":"Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. 2024. Depth in arrangements: Dehn–Sommerville–Euler relations with applications. Journal of Applied and Computational Topology. 8, 557–578.","mla":"Biswas, Ranita, et al. “Depth in Arrangements: Dehn–Sommerville–Euler Relations with Applications.” <i>Journal of Applied and Computational Topology</i>, vol. 8, Springer Nature, 2024, pp. 557–78, doi:<a href=\"https://doi.org/10.1007/s41468-024-00173-w\">10.1007/s41468-024-00173-w</a>.","ama":"Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. Depth in arrangements: Dehn–Sommerville–Euler relations with applications. <i>Journal of Applied and Computational Topology</i>. 2024;8:557-578. doi:<a href=\"https://doi.org/10.1007/s41468-024-00173-w\">10.1007/s41468-024-00173-w</a>","chicago":"Biswas, Ranita, Sebastiano Cultrera di Montesano, Herbert Edelsbrunner, and Morteza Saghafian. “Depth in Arrangements: Dehn–Sommerville–Euler Relations with Applications.” <i>Journal of Applied and Computational Topology</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s41468-024-00173-w\">https://doi.org/10.1007/s41468-024-00173-w</a>.","short":"R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Journal of Applied and Computational Topology 8 (2024) 557–578.","apa":"Biswas, R., Cultrera di Montesano, S., Edelsbrunner, H., &#38; Saghafian, M. (2024). Depth in arrangements: Dehn–Sommerville–Euler relations with applications. <i>Journal of Applied and Computational Topology</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s41468-024-00173-w\">https://doi.org/10.1007/s41468-024-00173-w</a>","ieee":"R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, and M. Saghafian, “Depth in arrangements: Dehn–Sommerville–Euler relations with applications,” <i>Journal of Applied and Computational Topology</i>, vol. 8. Springer Nature, pp. 557–578, 2024."},"file":[{"creator":"dernst","checksum":"0ee15c1493a6413cf356ab2f32c81a9e","success":1,"file_name":"2024_JourApplCompTopo_BiswasRa.pdf","relation":"main_file","access_level":"open_access","file_size":522831,"content_type":"application/pdf","date_created":"2025-04-23T08:01:36Z","date_updated":"2025-04-23T08:01:36Z","file_id":"19612"}],"scopus_import":"1","ec_funded":1,"related_material":{"record":[{"id":"11658","relation":"earlier_version","status":"public"}]},"day":"01","author":[{"orcid":"0000-0002-5372-7890","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","first_name":"Ranita","last_name":"Biswas","full_name":"Biswas, Ranita"},{"last_name":"Cultrera Di Montesano","full_name":"Cultrera Di Montesano, Sebastiano","id":"34D2A09C-F248-11E8-B48F-1D18A9856A87","first_name":"Sebastiano","orcid":"0000-0001-6249-0832"},{"last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833"},{"first_name":"Morteza","id":"f86f7148-b140-11ec-9577-95435b8df824","full_name":"Saghafian, Morteza","last_name":"Saghafian"}],"volume":8,"publisher":"Springer Nature","project":[{"name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"788183"},{"_id":"268116B8-B435-11E9-9278-68D0E5697425","grant_number":"Z00342","call_identifier":"FWF","name":"Mathematics, Computer Science"},{"name":"Persistence and stability of geometric complexes","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35","call_identifier":"FWF"}],"OA_place":"publisher","doi":"10.1007/s41468-024-00173-w","quality_controlled":"1","oa_version":"Published Version","article_type":"original","month":"09","ddc":["510"],"status":"public","year":"2024","date_updated":"2025-05-14T09:27:57Z","date_created":"2024-05-12T22:01:03Z","publication":"Journal of Applied and Computational Topology","acknowledgement":"The authors thank Uli Wagner and Emo Welzl for comments on an earlier version of this paper, and for pointing out related work in the prior literature.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, Grant No. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35.","publication_identifier":{"eissn":["2367-1734"],"issn":["2367-1726"]},"external_id":{"pmid":["39308789"]},"abstract":[{"lang":"eng","text":"The depth of a cell in an arrangement of n (non-vertical) great-spheres in Sd is the number of great-spheres that pass above the cell. We prove Euler-type relations, which imply extensions of the classic Dehn–Sommerville relations for convex polytopes to sublevel sets of the depth function, and we use the relations to extend the expressions for the number of faces of neighborly polytopes to the number of cells of levels in neighborly arrangements."}],"department":[{"_id":"HeEd"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","file_date_updated":"2025-04-23T08:01:36Z","language":[{"iso":"eng"}],"OA_type":"hybrid","date_published":"2024-09-01T00:00:00Z","pmid":1,"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"Yes (via OA deal)","title":"Depth in arrangements: Dehn–Sommerville–Euler relations with applications","intvolume":"         8","has_accepted_license":"1","_id":"15380","type":"journal_article"},{"day":"19","author":[{"orcid":"0000-0002-8602-4374","id":"4871BCE6-F248-11E8-B48F-1D18A9856A87","first_name":"Dámaris K","full_name":"Rangel Guerrero, Dámaris K","last_name":"Rangel Guerrero"},{"first_name":"Kira","last_name":"Balueva","full_name":"Balueva, Kira"},{"first_name":"Uladzislau","id":"b515be12-ec90-11ea-b966-d0b5e15613d2","last_name":"Barayeu","full_name":"Barayeu, Uladzislau"},{"last_name":"Baracskay","full_name":"Baracskay, Peter","first_name":"Peter","id":"361CC00E-F248-11E8-B48F-1D18A9856A87"},{"id":"4B60654C-F248-11E8-B48F-1D18A9856A87","first_name":"Igor","orcid":"0000-0002-1807-1929","full_name":"Gridchyn, Igor","last_name":"Gridchyn"},{"full_name":"Nardin, Michele","last_name":"Nardin","orcid":"0000-0001-8849-6570","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","first_name":"Michele"},{"first_name":"Chiara N","id":"37BB4FB6-F248-11E8-B48F-1D18A9856A87","last_name":"Roth","full_name":"Roth, Chiara N"},{"last_name":"Wulff","full_name":"Wulff, Peer","first_name":"Peer"},{"orcid":"0000-0002-5193-4036","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","first_name":"Jozsef L","full_name":"Csicsvari, Jozsef L","last_name":"Csicsvari"}],"volume":112,"publisher":"Cell Press","project":[{"call_identifier":"FWF","grant_number":"I 3713-B27","_id":"2654F984-B435-11E9-9278-68D0E5697425","name":"Interneuro plasticity during spatial learning"}],"page":"2045-2061.e10","publication_status":"published","file":[{"creator":"dernst","checksum":"de5b18ff293d42bd90e83a193e889844","success":1,"file_name":"2024_Neuron_RangelGuerrero.pdf","file_size":9149079,"relation":"main_file","access_level":"open_access","content_type":"application/pdf","date_updated":"2025-01-09T09:15:31Z","file_id":"18798","date_created":"2025-01-09T09:15:31Z"}],"citation":{"ieee":"D. K. Rangel Guerrero <i>et al.</i>, “Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning,” <i>Neuron</i>, vol. 112, no. 12. Cell Press, p. 2045–2061.e10, 2024.","short":"D.K. Rangel Guerrero, K. Balueva, U. Barayeu, P. Baracskay, I. Gridchyn, M. Nardin, C.N. Roth, P. Wulff, J.L. Csicsvari, Neuron 112 (2024) 2045–2061.e10.","apa":"Rangel Guerrero, D. K., Balueva, K., Barayeu, U., Baracskay, P., Gridchyn, I., Nardin, M., … Csicsvari, J. L. (2024). Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning. <i>Neuron</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">https://doi.org/10.1016/j.neuron.2024.03.019</a>","ama":"Rangel Guerrero DK, Balueva K, Barayeu U, et al. Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning. <i>Neuron</i>. 2024;112(12):2045-2061.e10. doi:<a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">10.1016/j.neuron.2024.03.019</a>","mla":"Rangel Guerrero, Dámaris K., et al. “Hippocampal Cholecystokinin-Expressing Interneurons Regulate Temporal Coding and Contextual Learning.” <i>Neuron</i>, vol. 112, no. 12, Cell Press, 2024, p. 2045–2061.e10, doi:<a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">10.1016/j.neuron.2024.03.019</a>.","chicago":"Rangel Guerrero, Dámaris K, Kira Balueva, Uladzislau Barayeu, Peter Baracskay, Igor Gridchyn, Michele Nardin, Chiara N Roth, Peer Wulff, and Jozsef L Csicsvari. “Hippocampal Cholecystokinin-Expressing Interneurons Regulate Temporal Coding and Contextual Learning.” <i>Neuron</i>. Cell Press, 2024. <a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">https://doi.org/10.1016/j.neuron.2024.03.019</a>.","ista":"Rangel Guerrero DK, Balueva K, Barayeu U, Baracskay P, Gridchyn I, Nardin M, Roth CN, Wulff P, Csicsvari JL. 2024. Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning. Neuron. 112(12), 2045–2061.e10."},"isi":1,"scopus_import":"1","oa_version":"Published Version","month":"06","article_type":"original","ddc":["570"],"issue":"12","status":"public","OA_place":"publisher","quality_controlled":"1","doi":"10.1016/j.neuron.2024.03.019","department":[{"_id":"JoCs"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","oa":1,"publication":"Neuron","date_created":"2024-05-12T22:01:03Z","date_updated":"2025-09-08T07:26:42Z","year":"2024","publication_identifier":{"issn":["0896-6273"],"eissn":["1097-4199"]},"acknowledgement":"We thank the kind donations from Andrea Varro, Brian Sauer, Edward Boyden, and Peter Jonas. We thank Jago Wallenschus, Kerstin Kronenbitter, and Didier Gremelle for outstanding technical support; Laura Bollepalli for initial viral targeting experiments; Cihan Önal for initial electrophysiology experiments; Yoav Ben-Simon for histological advice; and Anton Nikitenko for contributing to the analysis. We acknowledge support from the Miba Machine Shop, Bioimaging-, Life Science- and Pre-Clinical Facilities at ISTA. This work was supported by the Austrian Science Fund (FWF I3713 to J.C. as part of the FOR 2143 research consortium), the Deutsche Forschungsgemeinschaft (DFG) (WU 503/2-2 to P.W.), and the Medical Research Council, United Kingdom (grant G1100546/2 to P.W.).","external_id":{"isi":["001300571400001"],"pmid":["38636524"]},"abstract":[{"lang":"eng","text":"Cholecystokinin-expressing interneurons (CCKIs) are hypothesized to shape pyramidal cell-firing patterns and regulate network oscillations and related network state transitions. To directly probe their role in the CA1 region, we silenced their activity using optogenetic and chemogenetic tools in mice. Opto-tagged CCKIs revealed a heterogeneous population, and their optogenetic silencing triggered wide disinhibitory network changes affecting both pyramidal cells and other interneurons. CCKI silencing enhanced pyramidal cell burst firing and altered the temporal coding of place cells: theta phase precession was disrupted, whereas sequence reactivation was enhanced. Chemogenetic CCKI silencing did not alter the acquisition of spatial reference memories on the Morris water maze but enhanced the recall of contextual fear memories and enabled selective recall when similar environments were tested. This work suggests the key involvement of CCKIs in the control of place-cell temporal coding and the formation of contextual memories."}],"intvolume":"       112","has_accepted_license":"1","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"PreCl"}],"_id":"15381","type":"journal_article","file_date_updated":"2025-01-09T09:15:31Z","language":[{"iso":"eng"}],"OA_type":"hybrid","pmid":1,"date_published":"2024-06-19T00:00:00Z","title":"Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning","article_processing_charge":"Yes (via OA deal)","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}}]