[{"external_id":{"pmid":["38636524"],"isi":["001300571400001"]},"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"PreCl"}],"OA_type":"hybrid","file":[{"file_name":"2024_Neuron_RangelGuerrero.pdf","date_updated":"2025-01-09T09:15:31Z","checksum":"de5b18ff293d42bd90e83a193e889844","relation":"main_file","file_size":9149079,"file_id":"18798","date_created":"2025-01-09T09:15:31Z","success":1,"access_level":"open_access","creator":"dernst","content_type":"application/pdf"}],"page":"2045-2061.e10","acknowledgement":"We thank the kind donations from Andrea Varro, Brian Sauer, Edward Boyden, and Peter Jonas. We thank Jago Wallenschus, Kerstin Kronenbitter, and Didier Gremelle for outstanding technical support; Laura Bollepalli for initial viral targeting experiments; Cihan Önal for initial electrophysiology experiments; Yoav Ben-Simon for histological advice; and Anton Nikitenko for contributing to the analysis. We acknowledge support from the Miba Machine Shop, Bioimaging-, Life Science- and Pre-Clinical Facilities at ISTA. This work was supported by the Austrian Science Fund (FWF I3713 to J.C. as part of the FOR 2143 research consortium), the Deutsche Forschungsgemeinschaft (DFG) (WU 503/2-2 to P.W.), and the Medical Research Council, United Kingdom (grant G1100546/2 to P.W.).","publication_identifier":{"eissn":["1097-4199"],"issn":["0896-6273"]},"month":"06","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","project":[{"grant_number":"I 3713-B27","call_identifier":"FWF","name":"Interneuro plasticity during spatial learning","_id":"2654F984-B435-11E9-9278-68D0E5697425"}],"file_date_updated":"2025-01-09T09:15:31Z","corr_author":"1","has_accepted_license":"1","citation":{"ieee":"D. K. Rangel Guerrero <i>et al.</i>, “Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning,” <i>Neuron</i>, vol. 112, no. 12. Cell Press, p. 2045–2061.e10, 2024.","ista":"Rangel Guerrero DK, Balueva K, Barayeu U, Baracskay P, Gridchyn I, Nardin M, Roth CN, Wulff P, Csicsvari JL. 2024. Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning. Neuron. 112(12), 2045–2061.e10.","short":"D.K. Rangel Guerrero, K. Balueva, U. Barayeu, P. Baracskay, I. Gridchyn, M. Nardin, C.N. Roth, P. Wulff, J.L. Csicsvari, Neuron 112 (2024) 2045–2061.e10.","mla":"Rangel Guerrero, Dámaris K., et al. “Hippocampal Cholecystokinin-Expressing Interneurons Regulate Temporal Coding and Contextual Learning.” <i>Neuron</i>, vol. 112, no. 12, Cell Press, 2024, p. 2045–2061.e10, doi:<a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">10.1016/j.neuron.2024.03.019</a>.","ama":"Rangel Guerrero DK, Balueva K, Barayeu U, et al. Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning. <i>Neuron</i>. 2024;112(12):2045-2061.e10. doi:<a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">10.1016/j.neuron.2024.03.019</a>","apa":"Rangel Guerrero, D. K., Balueva, K., Barayeu, U., Baracskay, P., Gridchyn, I., Nardin, M., … Csicsvari, J. L. (2024). Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning. <i>Neuron</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">https://doi.org/10.1016/j.neuron.2024.03.019</a>","chicago":"Rangel Guerrero, Dámaris K, Kira Balueva, Uladzislau Barayeu, Peter Baracskay, Igor Gridchyn, Michele Nardin, Chiara N Roth, Peer Wulff, and Jozsef L Csicsvari. “Hippocampal Cholecystokinin-Expressing Interneurons Regulate Temporal Coding and Contextual Learning.” <i>Neuron</i>. Cell Press, 2024. <a href=\"https://doi.org/10.1016/j.neuron.2024.03.019\">https://doi.org/10.1016/j.neuron.2024.03.019</a>."},"language":[{"iso":"eng"}],"date_updated":"2025-09-08T07:26:42Z","department":[{"_id":"JoCs"}],"article_processing_charge":"Yes (via OA deal)","author":[{"last_name":"Rangel Guerrero","full_name":"Rangel Guerrero, Dámaris K","first_name":"Dámaris K","id":"4871BCE6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8602-4374"},{"first_name":"Kira","last_name":"Balueva","full_name":"Balueva, Kira"},{"full_name":"Barayeu, Uladzislau","last_name":"Barayeu","first_name":"Uladzislau","id":"b515be12-ec90-11ea-b966-d0b5e15613d2"},{"first_name":"Peter","id":"361CC00E-F248-11E8-B48F-1D18A9856A87","full_name":"Baracskay, Peter","last_name":"Baracskay"},{"first_name":"Igor","orcid":"0000-0002-1807-1929","id":"4B60654C-F248-11E8-B48F-1D18A9856A87","last_name":"Gridchyn","full_name":"Gridchyn, Igor"},{"orcid":"0000-0001-8849-6570","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","first_name":"Michele","full_name":"Nardin, Michele","last_name":"Nardin"},{"full_name":"Roth, Chiara N","last_name":"Roth","id":"37BB4FB6-F248-11E8-B48F-1D18A9856A87","first_name":"Chiara N"},{"full_name":"Wulff, Peer","last_name":"Wulff","first_name":"Peer"},{"id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036","first_name":"Jozsef L","full_name":"Csicsvari, Jozsef L","last_name":"Csicsvari"}],"doi":"10.1016/j.neuron.2024.03.019","publication_status":"published","oa_version":"Published Version","type":"journal_article","isi":1,"status":"public","publication":"Neuron","volume":112,"OA_place":"publisher","article_type":"original","title":"Hippocampal cholecystokinin-expressing interneurons regulate temporal coding and contextual learning","_id":"15381","day":"19","publisher":"Cell Press","ddc":["570"],"pmid":1,"date_published":"2024-06-19T00:00:00Z","issue":"12","year":"2024","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"intvolume":"       112","abstract":[{"lang":"eng","text":"Cholecystokinin-expressing interneurons (CCKIs) are hypothesized to shape pyramidal cell-firing patterns and regulate network oscillations and related network state transitions. To directly probe their role in the CA1 region, we silenced their activity using optogenetic and chemogenetic tools in mice. Opto-tagged CCKIs revealed a heterogeneous population, and their optogenetic silencing triggered wide disinhibitory network changes affecting both pyramidal cells and other interneurons. CCKI silencing enhanced pyramidal cell burst firing and altered the temporal coding of place cells: theta phase precession was disrupted, whereas sequence reactivation was enhanced. Chemogenetic CCKI silencing did not alter the acquisition of spatial reference memories on the Morris water maze but enhanced the recall of contextual fear memories and enabled selective recall when similar environments were tested. This work suggests the key involvement of CCKIs in the control of place-cell temporal coding and the formation of contextual memories."}],"date_created":"2024-05-12T22:01:03Z","quality_controlled":"1"},{"acknowledged_ssus":[{"_id":"PreCl"},{"_id":"M-Shop"},{"_id":"LifeSc"},{"_id":"Bio"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"17142"}]},"keyword":["ASD","periaqueductal gray","perception","behavior","potassium channels"],"acknowledgement":"We thank Armel Nicolas, Bella Bruszel and Ewelina Dutkiewicz from the ISTA Mass Spectrometry Service (Lab Services Facilities) for all Proteomics work, including samples preparation, LC/MS data acquisition, searches and data evaluation. We thank Prof. Peter Jonas for his suggestion on the involvement of potassium channels and members of the Neuroethology group for their comments on the manuscript. Katalin Szigeti and Julie Murmann for experimental help. This research was supported by the Scientific Service Units of ISTA through resources provided by the Lab Support Facility, the Imaging and Optics Facility, the Machine Shop Unit and the Preclinical Facility, especially Freyja Langer and Michael Schunn. 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Shared behavioural impairments in visual perception and place avoidance across different autism models are driven by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice. 2024. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:15385\">10.15479/AT:ISTA:15385</a>","apa":"Burnett, L., Koppensteiner, P., Symonova, O., Masson, T., Vega Zuniga, T. A., Contreras, X., … Jösch, M. A. (2024). Shared behavioural impairments in visual perception and place avoidance across different autism models are driven by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:15385\">https://doi.org/10.15479/AT:ISTA:15385</a>","chicago":"Burnett, Laura, Peter Koppensteiner, Olga Symonova, Tomas Masson, Tomas A Vega Zuniga, Ximena Contreras, Thomas Rülicke, Ryuichi Shigemoto, Gaia Novarino, and Maximilian A Jösch. “Shared Behavioural Impairments in Visual Perception and Place Avoidance across Different Autism Models Are Driven by Periaqueductal Grey Hypoexcitability in Setd5 Haploinsufficient Mice.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/AT:ISTA:15385\">https://doi.org/10.15479/AT:ISTA:15385</a>.","ista":"Burnett L, Koppensteiner P, Symonova O, Masson T, Vega Zuniga TA, Contreras X, Rülicke T, Shigemoto R, Novarino G, Jösch MA. 2024. Shared behavioural impairments in visual perception and place avoidance across different autism models are driven by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:15385\">10.15479/AT:ISTA:15385</a>.","ieee":"L. Burnett <i>et al.</i>, “Shared behavioural impairments in visual perception and place avoidance across different autism models are driven by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice.” Institute of Science and Technology Austria, 2024.","short":"L. Burnett, P. Koppensteiner, O. Symonova, T. Masson, T.A. Vega Zuniga, X. Contreras, T. Rülicke, R. Shigemoto, G. Novarino, M.A. Jösch, (2024).","mla":"Burnett, Laura, et al. <i>Shared Behavioural Impairments in Visual Perception and Place Avoidance across Different Autism Models Are Driven by Periaqueductal Grey Hypoexcitability in Setd5 Haploinsufficient Mice</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:15385\">10.15479/AT:ISTA:15385</a>."},"date_updated":"2025-09-08T07:57:11Z","date_published":"2024-05-15T00:00:00Z","department":[{"_id":"MaJö"},{"_id":"PreCl"},{"_id":"SiHi"},{"_id":"RySh"},{"_id":"GaNo"}],"year":"2024","tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"author":[{"first_name":"Laura","id":"3B717F68-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8937-410X","full_name":"Burnett, Laura","last_name":"Burnett"},{"first_name":"Peter","orcid":"0000-0002-3509-1948","id":"3B8B25A8-F248-11E8-B48F-1D18A9856A87","full_name":"Koppensteiner, Peter","last_name":"Koppensteiner"},{"full_name":"Symonova, Olga","last_name":"Symonova","first_name":"Olga","id":"3C0C7BC6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2012-9947"},{"full_name":"Masson, Tomas","last_name":"Masson","orcid":"0000-0002-2634-6283","id":"93ac43e8-8599-11eb-9b86-f6efb0a4c207","first_name":"Tomas"},{"first_name":"Tomas A","id":"2E7C4E78-F248-11E8-B48F-1D18A9856A87","full_name":"Vega Zuniga, Tomas A","last_name":"Vega Zuniga"},{"last_name":"Contreras","full_name":"Contreras, Ximena","id":"475990FE-F248-11E8-B48F-1D18A9856A87","first_name":"Ximena"},{"first_name":"Thomas","last_name":"Rülicke","full_name":"Rülicke, Thomas"},{"first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444","last_name":"Shigemoto","full_name":"Shigemoto, Ryuichi"},{"first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7673-7178","last_name":"Novarino","full_name":"Novarino, Gaia"},{"last_name":"Jösch","full_name":"Jösch, Maximilian A","first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3937-1330"}],"article_processing_charge":"No","oa":1,"doi":"10.15479/AT:ISTA:15385","date_created":"2024-05-13T15:04:04Z","abstract":[{"lang":"eng","text":"Relevant information about the data can be found in the 'Readme_Data.txt' file. \r\nA previous version of the publication can be found on BioRxiv: https://www.biorxiv.org/content/10.1101/2022.10.11.511691v4\r\nand published in Plos Biology (2024)"}],"oa_version":"Published Version","type":"research_data","status":"public"},{"volume":532,"OA_place":"repository","title":"Neurochemistry and circuit organization of the lateral spiriform nucleus of birds: A uniquely nonmammalian direct pathway component of the basal ganglia","article_type":"original","publication":"Journal of Comparative Neurology","pmid":1,"_id":"15404","publisher":"Wiley","day":"01","oa":1,"date_published":"2024-05-01T00:00:00Z","year":"2024","issue":"5","abstract":[{"text":"We used diverse methods to characterize the role of avian lateral spiriform nucleus (SpL) in basal ganglia motor function. Connectivity analysis showed that SpL receives input from globus pallidus (GP), and the intrapeduncular nucleus (INP) located ventromedial to GP, whose neurons express numerous striatal markers. SpL-projecting GP neurons were large and aspiny, while SpL-projecting INP neurons were medium sized and spiny. Connectivity analysis further showed that SpL receives inputs from subthalamic nucleus (STN) and substantia nigra pars reticulata (SNr), and that the SNr also receives inputs from GP, INP, and STN. Neurochemical analysis showed that SpL neurons express ENK, GAD, and a variety of pallidal neuron markers, and receive GABAergic terminals, some of which also contain DARPP32, consistent with GP pallidal and INP striatal inputs. Connectivity and neurochemical analysis showed that the SpL input to tectum prominently ends on GABAA receptor-enriched tectobulbar neurons. Behavioral studies showed that lesions of SpL impair visuomotor behaviors involving tracking and pecking moving targets. Our results suggest that SpL modulates brainstem-projecting tectobulbar neurons in a manner comparable to the demonstrated influence of GP internus on motor thalamus and of SNr on tectobulbar neurons in mammals. Given published data in amphibians and reptiles, it seems likely the SpL circuit represents a major direct pathway-type circuit by which the basal ganglia exerts its motor influence in nonmammalian tetrapods. The present studies also show that avian striatum is divided into three spatially segregated territories with differing connectivity, a medial striato-nigral territory, a dorsolateral striato-GP territory, and the ventrolateral INP motor territory.","lang":"eng"}],"date_created":"2024-05-19T22:01:12Z","intvolume":"       532","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11090467","open_access":"1"}],"quality_controlled":"1","month":"05","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","acknowledgement":"We gratefully thank Marion Joni, Tony Laverghetta, Sherry Cuthbertson, Gary Henderson, and Patricia Lindaman for technical assistance. The research presented here has been supported by NIH grants NS-16857, NS-19620, NS-28721, and EY-05298, and The Methodist Hospitals Endowed Professorship in Neuroscience (A. R.), by grant number 09/50623-9 from the Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (C. A. B. T.), by NIH grant EY-00735 (W. H.), and by NIH grants NS-12078 and EY-02145 (H. J. K.).","external_id":{"pmid":["38733146"],"isi":["001217825300001"]},"OA_type":"green","publication_identifier":{"issn":["0021-9967"],"eissn":["1096-9861"]},"citation":{"mla":"Reiner, Anton, et al. “Neurochemistry and Circuit Organization of the Lateral Spiriform Nucleus of Birds: A Uniquely Nonmammalian Direct Pathway Component of the Basal Ganglia.” <i>Journal of Comparative Neurology</i>, vol. 532, no. 5, e25620, Wiley, 2024, doi:<a href=\"https://doi.org/10.1002/cne.25620\">10.1002/cne.25620</a>.","ista":"Reiner A, Medina L, Abellan A, Deng Y, Toledo CAB, Luksch H, Vega Zuniga TA, Riley NB, Hodos W, Karten HJ. 2024. Neurochemistry and circuit organization of the lateral spiriform nucleus of birds: A uniquely nonmammalian direct pathway component of the basal ganglia. Journal of Comparative Neurology. 532(5), e25620.","short":"A. Reiner, L. Medina, A. Abellan, Y. Deng, C.A.B. Toledo, H. Luksch, T.A. Vega Zuniga, N.B. Riley, W. Hodos, H.J. Karten, Journal of Comparative Neurology 532 (2024).","ieee":"A. Reiner <i>et al.</i>, “Neurochemistry and circuit organization of the lateral spiriform nucleus of birds: A uniquely nonmammalian direct pathway component of the basal ganglia,” <i>Journal of Comparative Neurology</i>, vol. 532, no. 5. Wiley, 2024.","chicago":"Reiner, Anton, Loreta Medina, Antonio Abellan, Yunping Deng, Claudio A.B. Toledo, Harald Luksch, Tomas A Vega Zuniga, Nell B. Riley, William Hodos, and Harvey J. Karten. “Neurochemistry and Circuit Organization of the Lateral Spiriform Nucleus of Birds: A Uniquely Nonmammalian Direct Pathway Component of the Basal Ganglia.” <i>Journal of Comparative Neurology</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/cne.25620\">https://doi.org/10.1002/cne.25620</a>.","apa":"Reiner, A., Medina, L., Abellan, A., Deng, Y., Toledo, C. A. B., Luksch, H., … Karten, H. J. (2024). Neurochemistry and circuit organization of the lateral spiriform nucleus of birds: A uniquely nonmammalian direct pathway component of the basal ganglia. <i>Journal of Comparative Neurology</i>. Wiley. <a href=\"https://doi.org/10.1002/cne.25620\">https://doi.org/10.1002/cne.25620</a>","ama":"Reiner A, Medina L, Abellan A, et al. Neurochemistry and circuit organization of the lateral spiriform nucleus of birds: A uniquely nonmammalian direct pathway component of the basal ganglia. <i>Journal of Comparative Neurology</i>. 2024;532(5). doi:<a href=\"https://doi.org/10.1002/cne.25620\">10.1002/cne.25620</a>"},"article_number":"e25620","language":[{"iso":"eng"}],"scopus_import":"1","author":[{"first_name":"Anton","full_name":"Reiner, Anton","last_name":"Reiner"},{"full_name":"Medina, Loreta","last_name":"Medina","first_name":"Loreta"},{"last_name":"Abellan","full_name":"Abellan, Antonio","first_name":"Antonio"},{"first_name":"Yunping","last_name":"Deng","full_name":"Deng, Yunping"},{"first_name":"Claudio A.B.","full_name":"Toledo, Claudio A.B.","last_name":"Toledo"},{"first_name":"Harald","last_name":"Luksch","full_name":"Luksch, Harald"},{"full_name":"Vega Zuniga, Tomas A","last_name":"Vega Zuniga","first_name":"Tomas A","id":"2E7C4E78-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Riley","full_name":"Riley, Nell B.","first_name":"Nell B."},{"first_name":"William","full_name":"Hodos, William","last_name":"Hodos"},{"first_name":"Harvey J.","full_name":"Karten, Harvey J.","last_name":"Karten"}],"article_processing_charge":"No","date_updated":"2025-09-08T07:29:27Z","department":[{"_id":"MaJö"}],"isi":1,"status":"public","publication_status":"published","doi":"10.1002/cne.25620","type":"journal_article","oa_version":"Submitted Version"},{"external_id":{"isi":["001214916200001"]},"file":[{"relation":"main_file","checksum":"47b428f6209d8a6f9869031d9cb8dae6","file_size":4472346,"file_name":"2024_AstrophysicalJourn_Yue.pdf","date_updated":"2024-05-21T11:13:25Z","creator":"dernst","content_type":"application/pdf","file_id":"15410","success":1,"access_level":"open_access","date_created":"2024-05-21T11:13:25Z"}],"acknowledgement":"We thank the referee for the valuable comments on this paper. We thank John Silverman, Madeline Marshall, MingYang Zhuang, Weizhe Liu, and Jinyi Yang for inspiring discussions and suggestions. D.K. is grateful for the support from JSPS KAKENHI grant No. JP21K13956. This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope\r\nScience Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are\r\nassociated with program ID #1243. Facility: JWST (NIRCam) Software: astropy (Astropy Collaboration et al. 2013, 2018), psfMC (Mechtley 2014), webbpsf (Perrin et al. 2014), jwst.","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"month":"05","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","DOAJ_listed":"1","scopus_import":"1","file_date_updated":"2024-05-21T11:13:25Z","article_number":"176","has_accepted_license":"1","citation":{"mla":"Yue, Minghao, et al. “EIGER. V. Characterizing the Host Galaxies of Luminous Quasars at z ≳ 6.” <i>Astrophysical Journal</i>, vol. 966, no. 2, 176, IOP Publishing, 2024, doi:<a href=\"https://doi.org/10.3847/1538-4357/ad3914\">10.3847/1538-4357/ad3914</a>.","ieee":"M. Yue <i>et al.</i>, “EIGER. V. Characterizing the host galaxies of luminous quasars at z ≳ 6,” <i>Astrophysical Journal</i>, vol. 966, no. 2. IOP Publishing, 2024.","short":"M. Yue, A.C. Eilers, R.A. Simcoe, R. Mackenzie, J.J. Matthee, D. Kashino, R. Bordoloi, S.J. Lilly, R.P. Naidu, Astrophysical Journal 966 (2024).","ista":"Yue M, Eilers AC, Simcoe RA, Mackenzie R, Matthee JJ, Kashino D, Bordoloi R, Lilly SJ, Naidu RP. 2024. EIGER. V. Characterizing the host galaxies of luminous quasars at z ≳ 6. Astrophysical Journal. 966(2), 176.","ama":"Yue M, Eilers AC, Simcoe RA, et al. EIGER. V. Characterizing the host galaxies of luminous quasars at z ≳ 6. <i>Astrophysical Journal</i>. 2024;966(2). doi:<a href=\"https://doi.org/10.3847/1538-4357/ad3914\">10.3847/1538-4357/ad3914</a>","chicago":"Yue, Minghao, Anna Christina Eilers, Robert A. Simcoe, Ruari Mackenzie, Jorryt J Matthee, Daichi Kashino, Rongmon Bordoloi, Simon J. Lilly, and Rohan P. Naidu. “EIGER. V. Characterizing the Host Galaxies of Luminous Quasars at z ≳ 6.” <i>Astrophysical Journal</i>. IOP Publishing, 2024. <a href=\"https://doi.org/10.3847/1538-4357/ad3914\">https://doi.org/10.3847/1538-4357/ad3914</a>.","apa":"Yue, M., Eilers, A. C., Simcoe, R. A., Mackenzie, R., Matthee, J. J., Kashino, D., … Naidu, R. P. (2024). EIGER. V. Characterizing the host galaxies of luminous quasars at z ≳ 6. <i>Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ad3914\">https://doi.org/10.3847/1538-4357/ad3914</a>"},"language":[{"iso":"eng"}],"date_updated":"2025-09-08T07:30:17Z","department":[{"_id":"JoMa"}],"article_processing_charge":"Yes","author":[{"full_name":"Yue, Minghao","last_name":"Yue","first_name":"Minghao"},{"first_name":"Anna Christina","last_name":"Eilers","full_name":"Eilers, Anna Christina"},{"first_name":"Robert A.","full_name":"Simcoe, Robert A.","last_name":"Simcoe"},{"first_name":"Ruari","last_name":"Mackenzie","full_name":"Mackenzie, Ruari"},{"first_name":"Jorryt J","orcid":"0000-0003-2871-127X","id":"7439a258-f3c0-11ec-9501-9df22fe06720","last_name":"Matthee","full_name":"Matthee, Jorryt J"},{"full_name":"Kashino, Daichi","last_name":"Kashino","first_name":"Daichi"},{"first_name":"Rongmon","last_name":"Bordoloi","full_name":"Bordoloi, Rongmon"},{"first_name":"Simon J.","last_name":"Lilly","full_name":"Lilly, Simon J."},{"first_name":"Rohan P.","full_name":"Naidu, Rohan P.","last_name":"Naidu"}],"doi":"10.3847/1538-4357/ad3914","publication_status":"published","oa_version":"Published Version","type":"journal_article","isi":1,"status":"public","publication":"Astrophysical Journal","volume":966,"article_type":"original","title":"EIGER. V. Characterizing the host galaxies of luminous quasars at z ≳ 6","_id":"15405","day":"01","publisher":"IOP Publishing","ddc":["520"],"date_published":"2024-05-01T00:00:00Z","issue":"2","year":"2024","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"date_created":"2024-05-19T22:01:12Z","abstract":[{"text":"We report JWST/NIRCam measurements of quasar host galaxy emissions and supermassive black hole (SMBH) masses for six quasars at 5.9 < z < 7.1 in the Emission-line galaxies and Intergalactic Gas in the Epoch of Reionization (EIGER) project. We obtain deep NIRCam imaging in the F115W, F200W, and F356W bands, as well as F356W grism spectroscopy of the quasars. We use bright unsaturated stars to construct models of the point-spread functions (PSFs) and estimate the errors of these PSFs. We then measure or constrain the fluxes and morphology of the quasar host galaxies by fitting the quasar images as a point source plus an exponential disk. We successfully detect the host galaxies of three quasars, which have host-to-quasar-flux ratios of ∼1%–5%. Spectral energy distribution fitting suggests that these quasar host galaxies have stellar masses of M* ≳ 1010M⊙. For quasars with host galaxy nondetections, we estimate the upper limits of their stellar masses. We use the grism spectra to measure the Hβ line profile and the continuum luminosity, then estimate the SMBH masses for the quasars. Our results indicate that the positive relation between SMBH masses and host galaxy stellar masses already exists at redshift z ≳ 6. The quasars in our sample show a high BH-to-stellar-mass ratio of MBH/M* ∼ 0.15, which is about ∼2 dex higher than local relations. We find that selection effects only contribute partially to the high MBH/M* ratios of high-redshift quasars. This result hints at a possible redshift evolution of the MBH–M* relation.","lang":"eng"}],"intvolume":"       966","quality_controlled":"1"},{"month":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","DOAJ_listed":"1","external_id":{"arxiv":["2402.05879"]},"acknowledgement":"This research was funded in whole or in part by the Austrian Science Fund (FWF) [10.55776/I3456,10.55776/I5539]. I.A.D. acknowledges the financial support of the German Research Foundation (DM 1/6-1). The quantum well growth and transport measurements were supported by RSF 23-72-30003. For open access purposes, the authors have applied a CC BY public copyright license to any authoraccepted manuscript version arising from this submission.","file":[{"creator":"dernst","content_type":"application/pdf","date_created":"2024-05-22T06:39:35Z","access_level":"open_access","success":1,"file_id":"15412","file_size":1697856,"checksum":"78c8c3cf1bda766e3de0db45f143a367","relation":"main_file","date_updated":"2024-05-22T06:39:35Z","file_name":"2024_PhysicalReviewResearch_Savchenko.pdf"}],"publication_identifier":{"eissn":["2643-1564"]},"article_number":"L022027","has_accepted_license":"1","citation":{"mla":"Savchenko, M. L., et al. “Optical Shubnikov-de Haas Oscillations in Two-Dimensional Electron Systems.” <i>Physical Review Research</i>, vol. 6, no. 2, L022027, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.6.L022027\">10.1103/PhysRevResearch.6.L022027</a>.","ista":"Savchenko ML, Gospodarič J, Shuvaev A, Dmitriev IA, Dziom V, Dobretsova AA, Mikhailov NN, Kvon ZD, Pimenov A. 2024. Optical Shubnikov-de Haas oscillations in two-dimensional electron systems. Physical Review Research. 6(2), L022027.","ieee":"M. L. Savchenko <i>et al.</i>, “Optical Shubnikov-de Haas oscillations in two-dimensional electron systems,” <i>Physical Review Research</i>, vol. 6, no. 2. American Physical Society, 2024.","short":"M.L. Savchenko, J. Gospodarič, A. Shuvaev, I.A. Dmitriev, V. Dziom, A.A. Dobretsova, N.N. Mikhailov, Z.D. Kvon, A. Pimenov, Physical Review Research 6 (2024).","chicago":"Savchenko, M. L., J. Gospodarič, A. Shuvaev, I. A. Dmitriev, Vlad Dziom, A. A. Dobretsova, N. N. Mikhailov, Z. D. Kvon, and A. Pimenov. “Optical Shubnikov-de Haas Oscillations in Two-Dimensional Electron Systems.” <i>Physical Review Research</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevResearch.6.L022027\">https://doi.org/10.1103/PhysRevResearch.6.L022027</a>.","apa":"Savchenko, M. L., Gospodarič, J., Shuvaev, A., Dmitriev, I. A., Dziom, V., Dobretsova, A. A., … Pimenov, A. (2024). Optical Shubnikov-de Haas oscillations in two-dimensional electron systems. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.6.L022027\">https://doi.org/10.1103/PhysRevResearch.6.L022027</a>","ama":"Savchenko ML, Gospodarič J, Shuvaev A, et al. Optical Shubnikov-de Haas oscillations in two-dimensional electron systems. <i>Physical Review Research</i>. 2024;6(2). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.6.L022027\">10.1103/PhysRevResearch.6.L022027</a>"},"language":[{"iso":"eng"}],"scopus_import":"1","file_date_updated":"2024-05-22T06:39:35Z","author":[{"first_name":"M. L.","last_name":"Savchenko","full_name":"Savchenko, M. L."},{"last_name":"Gospodarič","full_name":"Gospodarič, J.","first_name":"J."},{"first_name":"A.","last_name":"Shuvaev","full_name":"Shuvaev, A."},{"first_name":"I. A.","full_name":"Dmitriev, I. A.","last_name":"Dmitriev"},{"id":"6A9A37C2-8C5C-11E9-AE53-F2FDE5697425","orcid":"0000-0002-1648-0999","first_name":"Vlad","full_name":"Dziom, Vlad","last_name":"Dziom"},{"full_name":"Dobretsova, A. A.","last_name":"Dobretsova","first_name":"A. A."},{"first_name":"N. N.","last_name":"Mikhailov","full_name":"Mikhailov, N. N."},{"last_name":"Kvon","full_name":"Kvon, Z. D.","first_name":"Z. D."},{"full_name":"Pimenov, A.","last_name":"Pimenov","first_name":"A."}],"article_processing_charge":"Yes","date_updated":"2025-05-14T09:31:15Z","department":[{"_id":"ZhAl"}],"status":"public","doi":"10.1103/PhysRevResearch.6.L022027","publication_status":"published","oa_version":"Published Version","type":"journal_article","volume":6,"title":"Optical Shubnikov-de Haas oscillations in two-dimensional electron systems","article_type":"letter_note","publication":"Physical Review Research","ddc":["530"],"_id":"15406","day":"01","publisher":"American Physical Society","arxiv":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"date_published":"2024-04-01T00:00:00Z","issue":"2","year":"2024","intvolume":"         6","abstract":[{"lang":"eng","text":"We report on dynamic Shubnikov–de Haas (SdH) oscillations that are measured in the optical response, subterahertz transmittance of two-dimensional systems, and reveal two distinct types of oscillation nodes: “universal” nodes at integer ratios of radiation and cyclotron frequencies and “tunable” nodes at positions sensitive to all parameters of the structure. The nodes in both real and imaginary parts of the measured complex transmittance are analyzed using a dynamic version of the static Lifshitz-Kosevich formula. These results demonstrate that the node structure of the dynamic SdH oscillations provides an all-optical access to quantization- and interaction-induced renormalization effects, in addition to parameters one can obtain from the static SdH oscillations."}],"date_created":"2024-05-19T22:01:12Z","quality_controlled":"1"},{"month":"09","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","external_id":{"isi":["001308886700001"],"pmid":["38636606"]},"OA_type":"hybrid","page":"745-753","acknowledgement":"This work was funded by Deutsche Forschungsgemeinschaft, Germany, grants RO2133/ 9-1 and RO2133/ 9-2 in the setting of FOR2599 and TR156 project C11 (Project-ID 246807620–TRR 156) to A. Roers and Springboard-to-Postdoc grant of the Dresden International Graduate School for Biomedicine and Bioengineering (DIGS-BB), Dresden, Germany, and Fond zur Förderung der Wissenschaftlichen Forschung (FWF), Austria, Hertha Firnberg grant (project number T-1219) to A. Polikarpova.\r\nWe thank Dr Michael Gerlach, Core Facility Cellular Imaging, Faculty of Medicine Carl Gustav Carus, TU Dresden, for expert support of in vivo imaging experiments; Grace Wurigamule for help with 2-photon imaging and flow cytometric analysis of mouse skin; and Christina Hiller, Livia Schulze, Madelaine Rickauer, and Christa Haase for providing expert technical assistance.","file":[{"file_name":"2024_JourAllergyClinicalImm_Link.pdf","date_updated":"2025-01-13T10:55:28Z","checksum":"6a5af05082e1869d7cad6406fa4eb76c","relation":"main_file","file_size":1792425,"file_id":"18840","date_created":"2025-01-13T10:55:28Z","success":1,"access_level":"open_access","creator":"dernst","content_type":"application/pdf"}],"publication_identifier":{"issn":["0091-6749"],"eissn":["1097-6825"]},"has_accepted_license":"1","citation":{"ama":"Link K, Muhandes L, Polikarpova A, et al. Integrin β1–mediated mast cell immune-surveillance of blood vessel content. <i>Journal of Allergy and Clinical Immunology</i>. 2024;154(3):745-753. doi:<a href=\"https://doi.org/10.1016/j.jaci.2024.03.022\">10.1016/j.jaci.2024.03.022</a>","apa":"Link, K., Muhandes, L., Polikarpova, A., Lämmermann, T., Sixt, M. K., Fässler, R., &#38; Roers, A. (2024). Integrin β1–mediated mast cell immune-surveillance of blood vessel content. <i>Journal of Allergy and Clinical Immunology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jaci.2024.03.022\">https://doi.org/10.1016/j.jaci.2024.03.022</a>","chicago":"Link, Kristina, Lina Muhandes, Anastasia Polikarpova, Tim Lämmermann, Michael K Sixt, Reinhard Fässler, and Axel Roers. “Integrin Β1–Mediated Mast Cell Immune-Surveillance of Blood Vessel Content.” <i>Journal of Allergy and Clinical Immunology</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.jaci.2024.03.022\">https://doi.org/10.1016/j.jaci.2024.03.022</a>.","ieee":"K. Link <i>et al.</i>, “Integrin β1–mediated mast cell immune-surveillance of blood vessel content,” <i>Journal of Allergy and Clinical Immunology</i>, vol. 154, no. 3. Elsevier, pp. 745–753, 2024.","short":"K. Link, L. Muhandes, A. Polikarpova, T. Lämmermann, M.K. Sixt, R. Fässler, A. Roers, Journal of Allergy and Clinical Immunology 154 (2024) 745–753.","ista":"Link K, Muhandes L, Polikarpova A, Lämmermann T, Sixt MK, Fässler R, Roers A. 2024. Integrin β1–mediated mast cell immune-surveillance of blood vessel content. Journal of Allergy and Clinical Immunology. 154(3), 745–753.","mla":"Link, Kristina, et al. “Integrin Β1–Mediated Mast Cell Immune-Surveillance of Blood Vessel Content.” <i>Journal of Allergy and Clinical Immunology</i>, vol. 154, no. 3, Elsevier, 2024, pp. 745–53, doi:<a href=\"https://doi.org/10.1016/j.jaci.2024.03.022\">10.1016/j.jaci.2024.03.022</a>."},"language":[{"iso":"eng"}],"scopus_import":"1","file_date_updated":"2025-01-13T10:55:28Z","article_processing_charge":"Yes (in subscription journal)","author":[{"full_name":"Link, Kristina","last_name":"Link","first_name":"Kristina"},{"full_name":"Muhandes, Lina","last_name":"Muhandes","first_name":"Lina"},{"full_name":"Polikarpova, Anastasia","last_name":"Polikarpova","first_name":"Anastasia"},{"last_name":"Lämmermann","full_name":"Lämmermann, Tim","first_name":"Tim"},{"id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6620-9179","first_name":"Michael K","full_name":"Sixt, Michael K","last_name":"Sixt"},{"full_name":"Fässler, Reinhard","last_name":"Fässler","first_name":"Reinhard"},{"last_name":"Roers","full_name":"Roers, Axel","first_name":"Axel"}],"date_updated":"2025-09-08T07:28:25Z","department":[{"_id":"MiSi"}],"isi":1,"status":"public","doi":"10.1016/j.jaci.2024.03.022","publication_status":"published","oa_version":"Published Version","type":"journal_article","volume":154,"OA_place":"publisher","article_type":"original","title":"Integrin β1–mediated mast cell immune-surveillance of blood vessel content","publication":"Journal of Allergy and Clinical Immunology","ddc":["570"],"pmid":1,"_id":"15408","day":"01","publisher":"Elsevier","tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"oa":1,"date_published":"2024-09-01T00:00:00Z","issue":"3","year":"2024","date_created":"2024-05-19T22:01:13Z","abstract":[{"text":"Background: IgE-mediated degranulation of mast cells (MCs) provides rapid protection against environmental hazards, including animal venoms. A fraction of tissue-resident MCs intimately associates with blood vessels. These perivascular MCs were reported to extend projections into the vessel lumen and to be the first MCs to acquire intravenously injected IgE, suggesting that IgE loading of MCs depends on their vascular association.\r\nObjective: We sought to elucidate the molecular basis of the MC–blood vessel interaction and to determine its relevance for IgE-mediated immune responses.\r\nMethods: We selectively inactivated the Itgb1 gene, encoding the β1 chain of integrin adhesion molecules (ITGB1), in MCs by conditional gene targeting in mice. We analyzed skin MCs for blood vessel association, surface IgE density, and capability to bind circulating antibody specific for MC surface molecules, as well as in vivo responses to antigen administered via different routes.\r\nResults: Lack of ITGB1 expression severely compromised MC–blood vessel association. ITGB1-deficient MCs showed normal densities of surface IgE but reduced binding of intravenously injected antibodies. While their capacity to degranulate in response to IgE ligation in vivo was unimpaired, anaphylactic responses to antigen circulating in the vasculature were largely abolished.\r\nConclusions: ITGB1-mediated association of MCs with blood vessels is key for MC immune surveillance of blood vessel content, but is dispensable for slow steady-state loading of endogenous IgE onto tissue-resident MCs.","lang":"eng"}],"intvolume":"       154","quality_controlled":"1"},{"has_accepted_license":"1","citation":{"mla":"Derenthal, Ulrich, and Florian Alexander Wilsch. “Integral Points on Singular Del Pezzo Surfaces.” <i>Journal of the Institute of Mathematics of Jussieu</i>, vol. 23, no. 3, Cambridge University Press, 2024, pp. 1259–94, doi:<a href=\"https://doi.org/10.1017/S1474748022000482\">10.1017/S1474748022000482</a>.","short":"U. Derenthal, F.A. Wilsch, Journal of the Institute of Mathematics of Jussieu 23 (2024) 1259–1294.","ista":"Derenthal U, Wilsch FA. 2024. Integral points on singular del Pezzo surfaces. Journal of the Institute of Mathematics of Jussieu. 23(3), 1259–1294.","ieee":"U. Derenthal and F. A. Wilsch, “Integral points on singular del Pezzo surfaces,” <i>Journal of the Institute of Mathematics of Jussieu</i>, vol. 23, no. 3. Cambridge University Press, pp. 1259–1294, 2024.","chicago":"Derenthal, Ulrich, and Florian Alexander Wilsch. “Integral Points on Singular Del Pezzo Surfaces.” <i>Journal of the Institute of Mathematics of Jussieu</i>. Cambridge University Press, 2024. <a href=\"https://doi.org/10.1017/S1474748022000482\">https://doi.org/10.1017/S1474748022000482</a>.","apa":"Derenthal, U., &#38; Wilsch, F. A. (2024). Integral points on singular del Pezzo surfaces. <i>Journal of the Institute of Mathematics of Jussieu</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S1474748022000482\">https://doi.org/10.1017/S1474748022000482</a>","ama":"Derenthal U, Wilsch FA. Integral points on singular del Pezzo surfaces. <i>Journal of the Institute of Mathematics of Jussieu</i>. 2024;23(3):1259-1294. doi:<a href=\"https://doi.org/10.1017/S1474748022000482\">10.1017/S1474748022000482</a>"},"language":[{"iso":"eng"}],"scopus_import":"1","project":[{"_id":"26AEDAB2-B435-11E9-9278-68D0E5697425","name":"New frontiers of the Manin conjecture","call_identifier":"FWF","grant_number":"P32428"}],"file_date_updated":"2024-06-03T08:33:29Z","corr_author":"1","month":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"isi":["000881319200001"],"arxiv":["2109.06778"]},"acknowledgement":"The first author was partly supported by grant DE 1646/4-2 of the Deutsche Forschungsgemeinschaft. The second author was partly supported by FWF grant P 32428-N35 and conducted part of this work as a guest at the Institut de Mathématiques de Jussieu–Paris Rive Gauche invited by Antoine Chambert-Loir and funded by DAAD.","page":"1259-1294","file":[{"file_name":"2024_JourMathJussieu_Derenthal.pdf","date_updated":"2024-06-03T08:33:29Z","checksum":"c4698ea12cfe10ef2c6c79880290c7ac","relation":"main_file","file_size":592305,"file_id":"17102","date_created":"2024-06-03T08:33:29Z","success":1,"access_level":"open_access","content_type":"application/pdf","creator":"dernst"}],"publication_identifier":{"issn":["1474-7480"],"eissn":["1475-3030 "]},"isi":1,"status":"public","doi":"10.1017/S1474748022000482","publication_status":"published","oa_version":"Published Version","type":"journal_article","author":[{"first_name":"Ulrich","full_name":"Derenthal, Ulrich","last_name":"Derenthal"},{"full_name":"Wilsch, Florian Alexander","last_name":"Wilsch","first_name":"Florian Alexander","id":"560601DA-8D36-11E9-A136-7AC1E5697425","orcid":"0000-0001-7302-8256"}],"article_processing_charge":"Yes (via OA deal)","date_updated":"2025-04-15T07:39:01Z","department":[{"_id":"TiBr"}],"ddc":["510"],"_id":"10018","day":"10","publisher":"Cambridge University Press","arxiv":1,"volume":23,"article_type":"original","title":"Integral points on singular del Pezzo surfaces","publication":"Journal of the Institute of Mathematics of Jussieu","keyword":["Integral points","del Pezzo surface","universal torsor","Manin’s conjecture"],"date_created":"2021-09-15T10:06:48Z","intvolume":"        23","abstract":[{"lang":"eng","text":"In order to study integral points of bounded log-anticanonical height on weak del Pezzo surfaces, we classify weak del Pezzo pairs. As a representative example, we consider a quartic del Pezzo surface of singularity type A1 + A3 and prove an analogue of Manin's conjecture for integral points with respect to its singularities and its lines."}],"quality_controlled":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"date_published":"2024-05-10T00:00:00Z","issue":"3","year":"2024"},{"department":[{"_id":"JoMa"}],"date_updated":"2026-02-10T06:49:49Z","article_processing_charge":"Yes","author":[{"last_name":"Labbe","full_name":"Labbe, Ivo","first_name":"Ivo"},{"full_name":"Greene, Jenny E.","last_name":"Greene","first_name":"Jenny E."},{"first_name":"Rachel","last_name":"Bezanson","full_name":"Bezanson, Rachel"},{"first_name":"Seiji","full_name":"Fujimoto, Seiji","last_name":"Fujimoto"},{"first_name":"Lukas J.","last_name":"Furtak","full_name":"Furtak, Lukas J."},{"full_name":"Goulding, Andy D.","last_name":"Goulding","first_name":"Andy D."},{"full_name":"Matthee, Jorryt J","last_name":"Matthee","orcid":"0000-0003-2871-127X","id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J"},{"last_name":"Naidu","full_name":"Naidu, Rohan P.","first_name":"Rohan P."},{"full_name":"Oesch, Pascal A.","last_name":"Oesch","first_name":"Pascal A."},{"first_name":"Hakim","last_name":"Atek","full_name":"Atek, Hakim"},{"first_name":"Gabriel","full_name":"Brammer, Gabriel","last_name":"Brammer"},{"last_name":"Chemerynska","full_name":"Chemerynska, Iryna","first_name":"Iryna"},{"last_name":"Coe","full_name":"Coe, Dan","first_name":"Dan"},{"full_name":"Cutler, Sam E.","last_name":"Cutler","first_name":"Sam E."},{"last_name":"Dayal","full_name":"Dayal, Pratika","first_name":"Pratika"},{"full_name":"Feldmann, Robert","last_name":"Feldmann","first_name":"Robert"},{"first_name":"Marijn","full_name":"Franx, Marijn","last_name":"Franx"},{"first_name":"Karl","full_name":"Glazebrook, Karl","last_name":"Glazebrook"},{"first_name":"Joel","full_name":"Leja, Joel","last_name":"Leja"},{"first_name":"Michael","full_name":"Maseda, Michael","last_name":"Maseda"},{"full_name":"Marchesini, Danilo","last_name":"Marchesini","first_name":"Danilo"},{"last_name":"Nanayakkara","full_name":"Nanayakkara, Themiya","first_name":"Themiya"},{"last_name":"Nelson","full_name":"Nelson, Erica J.","first_name":"Erica J."},{"first_name":"Richard","last_name":"Pan","full_name":"Pan, Richard"},{"full_name":"Papovich, Casey","last_name":"Papovich","first_name":"Casey"},{"first_name":"Sedona H.","last_name":"Price","full_name":"Price, Sedona H."},{"last_name":"Suess","full_name":"Suess, Katherine A.","first_name":"Katherine A."},{"full_name":"Wang, Bingjie 冰洁","last_name":"Wang","first_name":"Bingjie 冰洁"},{"first_name":"John R.","full_name":"Weaver, John R.","last_name":"Weaver"},{"last_name":"Whitaker","full_name":"Whitaker, Katherine E.","first_name":"Katherine E."},{"first_name":"Christina C.","full_name":"Williams, Christina C.","last_name":"Williams"},{"first_name":"Adi","full_name":"Zitrin, Adi","last_name":"Zitrin"}],"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.3847/1538-4357/ad3551","status":"public","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"file":[{"file_name":"2024_AstrophysicalJourn_Labbe.pdf","date_updated":"2026-02-10T06:44:24Z","relation":"main_file","checksum":"825c35ebd26e292c8a5c2bffac327854","file_size":5041924,"file_id":"21201","success":1,"access_level":"open_access","date_created":"2026-02-10T06:44:24Z","content_type":"application/pdf","creator":"dernst"}],"acknowledgement":"I.L. acknowledges support from Australian Research Council Future Fellowship FT220100798. J.E.G. and A.D.G acknowledge support from NSF/AAG grant #1007094, and J.E.G. also acknowledges support from NSF/AAG grant #1007052. L.J.F. and A.Z. acknowledge support by Grant No. 2020750 from the United States–Israel Binational Science Foundation (BSF) and grant No. 2109066 from the United States National Science Foundation (NSF), and by the Ministry of Science & Technology of Israel. The Cosmic Dawn Center is funded by the Danish National Research Foundation (DNRF) under grant #140. This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant 200020_207349. P.D. acknowledges support from the NWO grant 016.VIDI.189.162 (“ODIN”) and from the European Commission’s and University of Groningen’s CO-FUND Rosalind Franklin program. R.P.N. acknowledges funding from JWST programs GO-1933 and GO-2279. Support for this work was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. This paper makes use of the ALMA data: ADS/JAO. ALMA #2022.1.00073.S, 2018.1.00035.L, and 2013.1.00999.S. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada), MOST and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO and NAOJ. The research of C.C.W. is supported by NOIRLab, which is managed by the Association of Universities for Research in Astronomy (AURA) under a cooperative agreement with the National Science Foundation.","external_id":{"arxiv":["2306.07320"]},"OA_type":"gold","DOAJ_listed":"1","month":"12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2026-02-10T06:44:24Z","scopus_import":"1","language":[{"iso":"eng"}],"citation":{"short":"I. Labbe, J.E. Greene, R. Bezanson, S. Fujimoto, L.J. Furtak, A.D. Goulding, J.J. Matthee, R.P. Naidu, P.A. Oesch, H. Atek, G. Brammer, I. Chemerynska, D. Coe, S.E. Cutler, P. Dayal, R. Feldmann, M. Franx, K. Glazebrook, J. Leja, M. Maseda, D. Marchesini, T. Nanayakkara, E.J. Nelson, R. Pan, C. Papovich, S.H. Price, K.A. Suess, B.冰洁 Wang, J.R. Weaver, K.E. Whitaker, C.C. Williams, A. Zitrin, The Astrophysical Journal 978 (2024).","ieee":"I. Labbe <i>et al.</i>, “UNCOVER: Candidate red active galactic nuclei at 3 &#60; z &#60; 7 with JWST and ALMA,” <i>The Astrophysical Journal</i>, vol. 978. IOP Publishing, 2024.","ista":"Labbe I, Greene JE, Bezanson R, Fujimoto S, Furtak LJ, Goulding AD, Matthee JJ, Naidu RP, Oesch PA, Atek H, Brammer G, Chemerynska I, Coe D, Cutler SE, Dayal P, Feldmann R, Franx M, Glazebrook K, Leja J, Maseda M, Marchesini D, Nanayakkara T, Nelson EJ, Pan R, Papovich C, Price SH, Suess KA, Wang B冰洁, Weaver JR, Whitaker KE, Williams CC, Zitrin A. 2024. UNCOVER: Candidate red active galactic nuclei at 3 &#60; z &#60; 7 with JWST and ALMA. The Astrophysical Journal. 978, 92.","mla":"Labbe, Ivo, et al. “UNCOVER: Candidate Red Active Galactic Nuclei at 3 &#60; z &#60; 7 with JWST and ALMA.” <i>The Astrophysical Journal</i>, vol. 978, 92, IOP Publishing, 2024, doi:<a href=\"https://doi.org/10.3847/1538-4357/ad3551\">10.3847/1538-4357/ad3551</a>.","ama":"Labbe I, Greene JE, Bezanson R, et al. UNCOVER: Candidate red active galactic nuclei at 3 &#60; z &#60; 7 with JWST and ALMA. <i>The Astrophysical Journal</i>. 2024;978. doi:<a href=\"https://doi.org/10.3847/1538-4357/ad3551\">10.3847/1538-4357/ad3551</a>","apa":"Labbe, I., Greene, J. E., Bezanson, R., Fujimoto, S., Furtak, L. J., Goulding, A. D., … Zitrin, A. (2024). UNCOVER: Candidate red active galactic nuclei at 3 &#60; z &#60; 7 with JWST and ALMA. <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ad3551\">https://doi.org/10.3847/1538-4357/ad3551</a>","chicago":"Labbe, Ivo, Jenny E. Greene, Rachel Bezanson, Seiji Fujimoto, Lukas J. Furtak, Andy D. Goulding, Jorryt J Matthee, et al. “UNCOVER: Candidate Red Active Galactic Nuclei at 3 &#60; z &#60; 7 with JWST and ALMA.” <i>The Astrophysical Journal</i>. IOP Publishing, 2024. <a href=\"https://doi.org/10.3847/1538-4357/ad3551\">https://doi.org/10.3847/1538-4357/ad3551</a>."},"has_accepted_license":"1","article_number":"92","year":"2024","date_published":"2024-12-26T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"quality_controlled":"1","intvolume":"       978","abstract":[{"text":"The James Webb Space Telescope (JWST) is revolutionizing our knowledge of z > 5 galaxies and their actively accreting black holes. Using the JWST Cycle 1 Treasury program Ultradeep NIRSpec and NIRCam Observations before the Epoch of Reionization (UNCOVER) in the lensing field A2744, we report the identification of a sample of little red dots at 3 < zphot < 7 that likely contain highly reddened accreting supermassive black holes. Using a NIRCam-only selection to F444W < 27.7 mag, we find 26 sources over the ∼45 arcmin^2 field that are blue in F115W − F200W ∼ 0 (or βUV ∼ –2.0 for fλ ∝ λ^β), red in F200W − F444W = 1−4 (βopt ∼ +2.0), and are dominated by a point-source-like central component. Of the 20 sources with deep Atacama Large Millimeter/submillimeter Array (ALMA) 1.2 mm coverage, none are detected individually or in a stack. For the majority of the sample, spectral energy distribution fits to the JWST+ALMA observations prefer models with hot dust rather than obscured star formation to reproduce the red NIRCam colors and ALMA 1.2 mm nondetections. While compact dusty star formation cannot be ruled out, the combination of extremely small sizes (〈re〉 ≈ 50 pc after correction for magnification), red rest-frame optical slopes, and hot dust can be explained by reddened broad-line active galactic nuclei (AGNs). Our targets have faint M1450 ≈ −14 to −18 mag but inferred bolometric luminosities of Lbol = 10^43–10^46 erg s^−1, reflecting their obscured nature. If the candidates are confirmed as AGNs with upcoming UNCOVER spectroscopy, then we have found an abundant population of reddened luminous AGNs that are at least ten times more numerous than UV-luminous AGNs at the same intrinsic bolometric luminosity.","lang":"eng"}],"date_created":"2026-01-28T15:26:12Z","publication":"The Astrophysical Journal","PlanS_conform":"1","article_type":"original","title":"UNCOVER: Candidate red active galactic nuclei at 3 < z < 7 with JWST and ALMA","OA_place":"publisher","volume":978,"arxiv":1,"publisher":"IOP Publishing","day":"26","_id":"21064","ddc":["520"]},{"date_updated":"2026-02-23T11:49:05Z","date_published":"2024-10-15T00:00:00Z","department":[{"_id":"AnSa"}],"year":"2024","author":[{"last_name":"Santana de Freitas Amaral","full_name":"Santana de Freitas Amaral, Miguel","id":"4f2d02dd-47a9-11ec-ad10-82820ed3f501","first_name":"Miguel"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"article_processing_charge":"No","oa":1,"doi":"10.5281/ZENODO.13934991","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/ZENODO.13934991"}],"abstract":[{"lang":"eng","text":"No description provided."}],"date_created":"2026-02-17T12:52:26Z","oa_version":"Published Version","type":"research_data_reference","status":"public","OA_type":"green","related_material":{"record":[{"id":"21251","relation":"used_for_analysis_in","status":"public"}]},"OA_place":"repository","month":"10","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"archaeal_membranes : code and examples","_id":"21304","day":"15","corr_author":"1","publisher":"Zenodo","has_accepted_license":"1","citation":{"chicago":"Santana de Freitas Amaral, Miguel. “Archaeal_membranes : Code and Examples.” Zenodo, 2024. <a href=\"https://doi.org/10.5281/ZENODO.13934991\">https://doi.org/10.5281/ZENODO.13934991</a>.","apa":"Santana de Freitas Amaral, M. (2024). archaeal_membranes : code and examples. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.13934991\">https://doi.org/10.5281/ZENODO.13934991</a>","ama":"Santana de Freitas Amaral M. archaeal_membranes : code and examples. 2024. doi:<a href=\"https://doi.org/10.5281/ZENODO.13934991\">10.5281/ZENODO.13934991</a>","mla":"Santana de Freitas Amaral, Miguel. <i>Archaeal_membranes : Code and Examples</i>. Zenodo, 2024, doi:<a href=\"https://doi.org/10.5281/ZENODO.13934991\">10.5281/ZENODO.13934991</a>.","ieee":"M. Santana de Freitas Amaral, “archaeal_membranes : code and examples.” Zenodo, 2024.","short":"M. Santana de Freitas Amaral, (2024).","ista":"Santana de Freitas Amaral M. 2024. archaeal_membranes : code and examples, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.13934991\">10.5281/ZENODO.13934991</a>."}},{"date_created":"2024-05-22T12:04:54Z","abstract":[{"lang":"eng","text":"Bacterial cell walls are gigadalton-large cross-linked polymers with a wide range of motional amplitudes, including rather rigid as well as highly flexible parts. Magic-angle spinning NMR is a powerful method to obtain atomic-level information about intact cell walls. Here we investigate sensitivity and information content of different homonuclear 13C-13C and heteronuclear H-N, H-C and N-C correlation experiments. We demonstrate that a CPMAS CryoProbe yields ca. 8-fold increased signal-to-noise over a room-temperature probe, or a ca. 3-4-fold larger per-mass sensitivity. The increased sensitivity allowed to obtain high-resolution spectra even on intact bacteria. Moreover, we compare resolution and sensitivity of 1H MAS experiments obtained at 100 kHz vs. 55 kHz. Our study provides useful hints for choosing experiments to extract atomic-level details on cell-wall samples. "}],"doi":"10.15479/AT:ISTA:17042","type":"research_data","oa_version":"Published Version","status":"public","date_published":"2024-05-22T00:00:00Z","date_updated":"2025-09-09T12:01:41Z","year":"2024","department":[{"_id":"PaSc"}],"tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"article_processing_charge":"No","author":[{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","orcid":"0000-0002-9350-7606","first_name":"Paul","full_name":"Schanda, Paul","last_name":"Schanda"}],"oa":1,"_id":"17042","publisher":"Institute of Science and Technology Austria","corr_author":"1","file_date_updated":"2024-05-22T12:17:10Z","day":"22","citation":{"ama":"Schanda P. Raw data to “MAS NMR experiments of corynebacterial cell walls: complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments.” 2024. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17042\">10.15479/AT:ISTA:17042</a>","chicago":"Schanda, Paul. “Raw Data to ‘MAS NMR Experiments of Corynebacterial Cell Walls: Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.’” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/AT:ISTA:17042\">https://doi.org/10.15479/AT:ISTA:17042</a>.","apa":"Schanda, P. (2024). Raw data to “MAS NMR experiments of corynebacterial cell walls: complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:17042\">https://doi.org/10.15479/AT:ISTA:17042</a>","mla":"Schanda, Paul. <i>Raw Data to “MAS NMR Experiments of Corynebacterial Cell Walls: Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.”</i> Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17042\">10.15479/AT:ISTA:17042</a>.","short":"P. Schanda, (2024).","ista":"Schanda P. 2024. Raw data to ‘MAS NMR experiments of corynebacterial cell walls: complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:17042\">10.15479/AT:ISTA:17042</a>.","ieee":"P. Schanda, “Raw data to ‘MAS NMR experiments of corynebacterial cell walls: complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments.’” Institute of Science and Technology Austria, 2024."},"ddc":["570"],"has_accepted_license":"1","contributor":[{"last_name":"Vallet","contributor_type":"data_collector","first_name":"Alicia"},{"last_name":"Ayala","first_name":"Isabel ","contributor_type":"data_collector"},{"first_name":"Barbara","contributor_type":"data_collector","last_name":"Perrone"},{"first_name":"Alia","contributor_type":"data_collector","last_name":"Hassan"},{"first_name":"Catherine","contributor_type":"data_collector","last_name":"Bougault"}],"keyword":["nuclear magnetic resonance","NMR","cellwall","structural biology","spectroscopy"],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"17291"}]},"file":[{"file_id":"17043","success":1,"access_level":"open_access","date_created":"2024-05-22T12:05:13Z","creator":"pschanda","content_type":"text/plain","date_updated":"2024-05-22T12:05:13Z","file_name":"Read_me.txt","relation":"main_file","checksum":"eb55f0988342d927702353b75e07edfa","file_size":2132},{"creator":"pschanda","content_type":"application/zip","file_id":"17044","access_level":"open_access","success":1,"date_created":"2024-05-22T12:17:10Z","relation":"main_file","checksum":"3393592acaf5ee1e032052c236780914","file_size":755704888,"file_name":"raw_data_CryoMAS_cyronebacteria.zip","date_updated":"2024-05-22T12:17:10Z"}],"month":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Raw data to \"MAS NMR experiments of corynebacterial cell walls: complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments\""},{"doi":"10.1038/s41467-024-48234-z","publication_status":"published","oa_version":"Published Version","type":"journal_article","isi":1,"status":"public","date_updated":"2025-09-08T07:37:29Z","department":[{"_id":"JiFr"}],"author":[{"first_name":"Sivamathini","full_name":"Rajappa, Sivamathini","last_name":"Rajappa"},{"first_name":"Pannaga","full_name":"Krishnamurthy, Pannaga","last_name":"Krishnamurthy"},{"full_name":"Huang, Hua","last_name":"Huang","first_name":"Hua"},{"last_name":"Yu","full_name":"Yu, Dejie","first_name":"Dejie"},{"last_name":"Friml","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří"},{"last_name":"Xu","full_name":"Xu, Jian","first_name":"Jian"},{"first_name":"Prakash P.","full_name":"Kumar, Prakash P.","last_name":"Kumar"}],"article_processing_charge":"Yes","scopus_import":"1","file_date_updated":"2024-05-27T07:43:46Z","article_number":"3978","has_accepted_license":"1","citation":{"ama":"Rajappa S, Krishnamurthy P, Huang H, et al. The translocation of a chloride channel from the Golgi to the plasma membrane helps plants adapt to salt stress. <i>Nature Communications</i>. 2024;15. doi:<a href=\"https://doi.org/10.1038/s41467-024-48234-z\">10.1038/s41467-024-48234-z</a>","apa":"Rajappa, S., Krishnamurthy, P., Huang, H., Yu, D., Friml, J., Xu, J., &#38; Kumar, P. P. (2024). The translocation of a chloride channel from the Golgi to the plasma membrane helps plants adapt to salt stress. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-024-48234-z\">https://doi.org/10.1038/s41467-024-48234-z</a>","chicago":"Rajappa, Sivamathini, Pannaga Krishnamurthy, Hua Huang, Dejie Yu, Jiří Friml, Jian Xu, and Prakash P. Kumar. “The Translocation of a Chloride Channel from the Golgi to the Plasma Membrane Helps Plants Adapt to Salt Stress.” <i>Nature Communications</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41467-024-48234-z\">https://doi.org/10.1038/s41467-024-48234-z</a>.","short":"S. Rajappa, P. Krishnamurthy, H. Huang, D. Yu, J. Friml, J. Xu, P.P. Kumar, Nature Communications 15 (2024).","ieee":"S. Rajappa <i>et al.</i>, “The translocation of a chloride channel from the Golgi to the plasma membrane helps plants adapt to salt stress,” <i>Nature Communications</i>, vol. 15. Springer Nature, 2024.","ista":"Rajappa S, Krishnamurthy P, Huang H, Yu D, Friml J, Xu J, Kumar PP. 2024. The translocation of a chloride channel from the Golgi to the plasma membrane helps plants adapt to salt stress. Nature Communications. 15, 3978.","mla":"Rajappa, Sivamathini, et al. “The Translocation of a Chloride Channel from the Golgi to the Plasma Membrane Helps Plants Adapt to Salt Stress.” <i>Nature Communications</i>, vol. 15, 3978, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1038/s41467-024-48234-z\">10.1038/s41467-024-48234-z</a>."},"language":[{"iso":"eng"}],"external_id":{"isi":["001221549300004"],"pmid":["38729926"]},"acknowledgement":"The authors thank Drs. Akihiko Nakano and Tomohiro Uemura (RIKEN and Ochanomizu University, Japan) for providing plant material (seeds of GFP-RABA1bQ72L GFP-RABA1bS27N), Dr. Prakash Arumugam (SIFBI, A*STAR, Singapore) for providing the yeast strains used in this study, and Dr. Jobichen Chacko for help with homology model building. We thank Prof. Elliot Meyerowitz (Caltech) and Dr. On Sun Lau (NUS) for critical reading of our manuscript. The National University of Singapore provided partial financial support as grant number A−8000149-03-00, and PhD research scholarship to S.R.","file":[{"creator":"dernst","content_type":"application/pdf","file_id":"17056","success":1,"access_level":"open_access","date_created":"2024-05-27T07:43:46Z","relation":"main_file","checksum":"79aacbe31cf7626b78da062b1339bdb0","file_size":20961818,"file_name":"2024_NatureComm_Rajappa.pdf","date_updated":"2024-05-27T07:43:46Z"}],"publication_identifier":{"eissn":["2041-1723"]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"05","DOAJ_listed":"1","intvolume":"        15","date_created":"2024-05-26T22:00:57Z","abstract":[{"text":"A key mechanism employed by plants to adapt to salinity stress involves maintaining ion homeostasis via the actions of ion transporters. While the function of cation transporters in maintaining ion homeostasis in plants has been extensively studied, little is known about the roles of their anion counterparts in this process. Here, we describe a mechanism of salt adaptation in plants. We characterized the chloride channel (CLC) gene AtCLCf, whose expression is regulated by WRKY transcription factor under salt stress in Arabidopsis thaliana. Loss-of-function atclcf seedlings show increased sensitivity to salt, whereas AtCLCf overexpression confers enhanced resistance to salt stress. Salt stress induces the translocation of GFP-AtCLCf fusion protein to the plasma membrane (PM). Blocking AtCLCf translocation using the exocytosis inhibitor brefeldin-A or mutating the small GTPase gene AtRABA1b/BEX5 (RAS GENES FROM RAT BRAINA1b homolog) increases salt sensitivity in plants. Electrophysiology and liposome-based assays confirm the Cl−/H+ antiport function of AtCLCf. Therefore, we have uncovered a mechanism of plant adaptation to salt stress involving the NaCl-induced translocation of AtCLCf to the PM, thus facilitating Cl− removal at the roots, and increasing the plant’s salinity tolerance.","lang":"eng"}],"quality_controlled":"1","date_published":"2024-05-10T00:00:00Z","year":"2024","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"_id":"17048","day":"10","publisher":"Springer Nature","ddc":["580"],"pmid":1,"publication":"Nature Communications","volume":15,"title":"The translocation of a chloride channel from the Golgi to the plasma membrane helps plants adapt to salt stress","article_type":"original"},{"publication_status":"published","doi":"10.1103/PhysRevResearch.6.023189","type":"journal_article","oa_version":"Published Version","status":"public","date_updated":"2025-05-14T09:32:40Z","department":[{"_id":"AnSa"}],"article_processing_charge":"Yes","author":[{"full_name":"Panoukidou, Maria","last_name":"Panoukidou","first_name":"Maria"},{"full_name":"Weir, Simon","last_name":"Weir","first_name":"Simon"},{"last_name":"Sorichetti","full_name":"Sorichetti, Valerio","first_name":"Valerio","id":"ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b","orcid":"0000-0002-9645-6576"},{"first_name":"Yair Gutierrez","last_name":"Fosado","full_name":"Fosado, Yair Gutierrez"},{"first_name":"Martin","last_name":"Lenz","full_name":"Lenz, Martin"},{"first_name":"Davide","full_name":"Michieletto, Davide","last_name":"Michieletto"}],"scopus_import":"1","file_date_updated":"2024-05-27T06:37:01Z","citation":{"ieee":"M. Panoukidou, S. Weir, V. Sorichetti, Y. G. Fosado, M. Lenz, and D. Michieletto, “Runaway transition in irreversible polymer condensation with cyclization,” <i>Physical Review Research</i>, vol. 6, no. 2. American Physical Society, 2024.","short":"M. Panoukidou, S. Weir, V. Sorichetti, Y.G. Fosado, M. Lenz, D. Michieletto, Physical Review Research 6 (2024).","ista":"Panoukidou M, Weir S, Sorichetti V, Fosado YG, Lenz M, Michieletto D. 2024. Runaway transition in irreversible polymer condensation with cyclization. Physical Review Research. 6(2), 023189.","mla":"Panoukidou, Maria, et al. “Runaway Transition in Irreversible Polymer Condensation with Cyclization.” <i>Physical Review Research</i>, vol. 6, no. 2, 023189, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.6.023189\">10.1103/PhysRevResearch.6.023189</a>.","apa":"Panoukidou, M., Weir, S., Sorichetti, V., Fosado, Y. G., Lenz, M., &#38; Michieletto, D. (2024). Runaway transition in irreversible polymer condensation with cyclization. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.6.023189\">https://doi.org/10.1103/PhysRevResearch.6.023189</a>","chicago":"Panoukidou, Maria, Simon Weir, Valerio Sorichetti, Yair Gutierrez Fosado, Martin Lenz, and Davide Michieletto. “Runaway Transition in Irreversible Polymer Condensation with Cyclization.” <i>Physical Review Research</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/PhysRevResearch.6.023189\">https://doi.org/10.1103/PhysRevResearch.6.023189</a>.","ama":"Panoukidou M, Weir S, Sorichetti V, Fosado YG, Lenz M, Michieletto D. Runaway transition in irreversible polymer condensation with cyclization. <i>Physical Review Research</i>. 2024;6(2). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.6.023189\">10.1103/PhysRevResearch.6.023189</a>"},"has_accepted_license":"1","article_number":"023189","language":[{"iso":"eng"}],"file":[{"access_level":"open_access","success":1,"date_created":"2024-05-27T06:37:01Z","file_id":"17055","content_type":"application/pdf","creator":"dernst","date_updated":"2024-05-27T06:37:01Z","file_name":"2024_PhysicalReviewResearch_Panoukidou.pdf","file_size":1409416,"relation":"main_file","checksum":"63a962d49ef1e21a3367d265784df14b"}],"acknowledgement":"D.M. acknowledges the support of the Royal Society via a University Research Fellowship. This project has received support from the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Program (Grant Agreement No. 947918 to D.M. and No. 677532 to M.L.). The authors acknowledge insightful discussions with Daan Noordermeer and Antonio Valdes, who also kindly gifted us with the 1288 plasmid.","external_id":{"arxiv":["2210.14010"]},"publication_identifier":{"eissn":["2643-1564"]},"month":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","DOAJ_listed":"1","abstract":[{"text":"The process of polymer condensation, i.e., the formation of bonds between reactive end groups, is ubiquitous in both industry and biology. Here we study generic systems undergoing polymer condensation in competition with cyclization. Using a generalized Smoluchowski theory, molecular dynamics simulations and experiments with DNA and ATP-consuming T4 ligase, we find that this system displays a transition, from a ring-dominated regime with finite-length chains at infinite time to a linear-polymers-dominated one with chains that keep growing in time. Finally, we show that fluids prepared close to the transition may have widely different compositions and rheology at large condensation times.","lang":"eng"}],"intvolume":"         6","date_created":"2024-05-26T22:00:58Z","quality_controlled":"1","date_published":"2024-05-01T00:00:00Z","year":"2024","issue":"2","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"_id":"17050","publisher":"American Physical Society","arxiv":1,"day":"01","ddc":["530"],"publication":"Physical Review Research","volume":6,"title":"Runaway transition in irreversible polymer condensation with cyclization","article_type":"original"},{"date_updated":"2025-09-08T07:35:40Z","department":[{"_id":"KrPi"}],"author":[{"last_name":"Auerbach","full_name":"Auerbach, Benedikt","first_name":"Benedikt","orcid":"0000-0002-7553-6606","id":"D33D2B18-E445-11E9-ABB7-15F4E5697425"},{"last_name":"Günther","full_name":"Günther, Christoph Ullrich","id":"ec98511c-eb8e-11eb-b029-edd25d7271a1","first_name":"Christoph Ullrich"},{"first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9139-1654","last_name":"Pietrzak","full_name":"Pietrzak, Krzysztof Z"}],"article_processing_charge":"No","doi":"10.1007/978-3-031-58734-4_11","publication_status":"published","oa_version":"Preprint","type":"conference","isi":1,"status":"public","external_id":{"isi":["001274940200011"]},"page":"315-344","acknowledgement":"We thank the Eurocrypt reviewers for their thorough review and for pointing out related works. This research was funded in whole or in part by the Austrian Science Fund (FWF) 10.55776/F85.","publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031587337"]},"conference":{"location":"Zurich, Switzerland","start_date":"2024-05-26","name":"EUROCRYPT: Theory and Applications of Cryptographic Techniques","end_date":"2024-05-30"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"05","scopus_import":"1","project":[{"grant_number":"F8509","_id":"34a34d57-11ca-11ed-8bc3-a2688a8724e1","name":"Security and Privacy by Design for Complex Systems"}],"corr_author":"1","citation":{"mla":"Auerbach, Benedikt, et al. “Trapdoor Memory-Hard Functions.” <i>43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques</i>, vol. 14653, Springer Nature, 2024, pp. 315–44, doi:<a href=\"https://doi.org/10.1007/978-3-031-58734-4_11\">10.1007/978-3-031-58734-4_11</a>.","short":"B. Auerbach, C.U. Günther, K.Z. Pietrzak, in:, 43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques, Springer Nature, 2024, pp. 315–344.","ieee":"B. Auerbach, C. U. Günther, and K. Z. Pietrzak, “Trapdoor memory-hard functions,” in <i>43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques</i>, Zurich, Switzerland, 2024, vol. 14653, pp. 315–344.","ista":"Auerbach B, Günther CU, Pietrzak KZ. 2024. Trapdoor memory-hard functions. 43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 14653, 315–344.","chicago":"Auerbach, Benedikt, Christoph Ullrich Günther, and Krzysztof Z Pietrzak. “Trapdoor Memory-Hard Functions.” In <i>43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques</i>, 14653:315–44. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-58734-4_11\">https://doi.org/10.1007/978-3-031-58734-4_11</a>.","apa":"Auerbach, B., Günther, C. U., &#38; Pietrzak, K. Z. (2024). Trapdoor memory-hard functions. In <i>43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques</i> (Vol. 14653, pp. 315–344). Zurich, Switzerland: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-58734-4_11\">https://doi.org/10.1007/978-3-031-58734-4_11</a>","ama":"Auerbach B, Günther CU, Pietrzak KZ. Trapdoor memory-hard functions. In: <i>43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques</i>. Vol 14653. Springer Nature; 2024:315-344. doi:<a href=\"https://doi.org/10.1007/978-3-031-58734-4_11\">10.1007/978-3-031-58734-4_11</a>"},"language":[{"iso":"eng"}],"date_published":"2024-05-01T00:00:00Z","alternative_title":["LNCS"],"year":"2024","oa":1,"main_file_link":[{"url":"https://eprint.iacr.org/2024/312","open_access":"1"}],"intvolume":"     14653","abstract":[{"lang":"eng","text":"Memory-hard functions (MHF) are functions whose evaluation provably requires\r\na lot of memory. While MHFs are an unkeyed primitive, it is natural to consider the\r\nnotion of trapdoor MHFs (TMHFs). A TMHF is like an MHF, but when sampling\r\nthe public parameters one also samples a trapdoor which allows evaluating the\r\nfunction much cheaper.\r\nBiryukov and Perrin (Asiacrypt’17) were the first to consider TMHFs and put\r\nforth a candidate TMHF construction called Diodon that is based on the Scrypt\r\nMHF (Percival, BSDCan’09). To allow for a trapdoor, Scrypt’s initial hash chain\r\nis replaced by a sequence of squares in a group of unknown order where the order of\r\nthe group is the trapdoor. For a length n sequence of squares and a group of order\r\nN, Diodon’s cumulative memory complexity (CMC) is O(n2log N) without the\r\ntrapdoor and O(n log(n) log(N)2) with knowledge of it.\r\nWhile Scrypt is proven to be optimally memory-hard in the random oracle\r\nmodel (Alwen et al., Eurocrypt’17), Diodon’s memory-hardness has not been\r\nproven so far. In this work, we fill this gap by rigorously analyzing a specific\r\ninstantiation of Diodon. We show that its CMC is lower bounded by Ω( n2log nlog N)\r\nwhich almost matches the upper bound. Our proof is based Alwen et al.’s lower\r\nbound on Scrypt’s CMC but requires non-trivial modifications due to the algebraic\r\nstructure of Diodon. Most importantly, our analysis involves a more elaborate\r\ncompression argument and a solvability criterion for certain systems of Diophantine\r\nequations."}],"date_created":"2024-05-26T22:00:58Z","quality_controlled":"1","publication":"43rd Annual International Conference on the Theory and Applications of Cryptographic Techniques","volume":14653,"title":"Trapdoor memory-hard functions","_id":"17051","day":"01","publisher":"Springer Nature"},{"abstract":[{"lang":"eng","text":"Production of thermoelectric materials from solution-processed particles involves the synthesis of particles, their purification and densification into pelletized material. Chemical changes that occur during each one of these steps render them performance determining. Particularly the purification steps, bypassed in conventional solid-state synthesis, are the cause for large discrepancies among similar solution-processed materials. In present work, the investigation focuses on a water-based surfactant free solution synthesis of SnSe, a highly relevant thermoelectric material. We show and rationalize that the number of leaching steps, purification solvent, annealing, and annealing atmosphere have significant influence on the Sn : Se ratio and impurity content in the powder. Such compositional changes that are undetectable by conventional characterization techniques lead to distinct consolidated materials with different types and concentration of defects. Additionally, the profound effect on their transport properties is demonstrated. We emphasize that understanding the chemistry and identifying key chemical species and their role throughout the process is paramount for optimizing material performance. Furthermore, we aim to demonstrate the necessity of comprehensive reporting of these steps as a standard practice to ensure material reproducibility."}],"intvolume":"        63","date_created":"2024-05-26T22:00:58Z","quality_controlled":"1","tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"oa":1,"date_published":"2024-06-17T00:00:00Z","year":"2024","issue":"25","ddc":["540"],"pmid":1,"_id":"17052","publisher":"Wiley","day":"17","OA_place":"publisher","volume":63,"ec_funded":1,"article_type":"original","title":"Unveiling crucial chemical processing parameters influencing the performance of solution-processed inorganic thermoelectric materials","publication":"Angewandte Chemie - International Edition","isi":1,"status":"public","publication_status":"published","doi":"10.1002/anie.202402628","type":"journal_article","oa_version":"Published Version","article_processing_charge":"Yes (via OA deal)","author":[{"id":"bd3fceba-dc74-11ea-a0a7-c17f71817366","first_name":"Christine","last_name":"Fiedler","full_name":"Fiedler, Christine"},{"last_name":"Calcabrini","full_name":"Calcabrini, Mariano","id":"45D7531A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4566-5877","first_name":"Mariano"},{"first_name":"Yu","orcid":"0000-0001-7313-6740","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","last_name":"Liu","full_name":"Liu, Yu"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","first_name":"Maria","last_name":"Ibáñez","full_name":"Ibáñez, Maria"}],"date_updated":"2025-09-08T07:36:36Z","department":[{"_id":"MaIb"}],"citation":{"short":"C. Fiedler, M. Calcabrini, Y. Liu, M. Ibáñez, Angewandte Chemie - International Edition 63 (2024).","ieee":"C. Fiedler, M. Calcabrini, Y. Liu, and M. Ibáñez, “Unveiling crucial chemical processing parameters influencing the performance of solution-processed inorganic thermoelectric materials,” <i>Angewandte Chemie - International Edition</i>, vol. 63, no. 25. Wiley, 2024.","ista":"Fiedler C, Calcabrini M, Liu Y, Ibáñez M. 2024. Unveiling crucial chemical processing parameters influencing the performance of solution-processed inorganic thermoelectric materials. Angewandte Chemie - International Edition. 63(25), e202402628.","mla":"Fiedler, Christine, et al. “Unveiling Crucial Chemical Processing Parameters Influencing the Performance of Solution-Processed Inorganic Thermoelectric Materials.” <i>Angewandte Chemie - International Edition</i>, vol. 63, no. 25, e202402628, Wiley, 2024, doi:<a href=\"https://doi.org/10.1002/anie.202402628\">10.1002/anie.202402628</a>.","ama":"Fiedler C, Calcabrini M, Liu Y, Ibáñez M. Unveiling crucial chemical processing parameters influencing the performance of solution-processed inorganic thermoelectric materials. <i>Angewandte Chemie - International Edition</i>. 2024;63(25). doi:<a href=\"https://doi.org/10.1002/anie.202402628\">10.1002/anie.202402628</a>","apa":"Fiedler, C., Calcabrini, M., Liu, Y., &#38; Ibáñez, M. (2024). Unveiling crucial chemical processing parameters influencing the performance of solution-processed inorganic thermoelectric materials. <i>Angewandte Chemie - International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.202402628\">https://doi.org/10.1002/anie.202402628</a>","chicago":"Fiedler, Christine, Mariano Calcabrini, Yu Liu, and Maria Ibáñez. “Unveiling Crucial Chemical Processing Parameters Influencing the Performance of Solution-Processed Inorganic Thermoelectric Materials.” <i>Angewandte Chemie - International Edition</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/anie.202402628\">https://doi.org/10.1002/anie.202402628</a>."},"article_number":"e202402628","has_accepted_license":"1","language":[{"iso":"eng"}],"scopus_import":"1","corr_author":"1","project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"},{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","call_identifier":"H2020"},{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"file_date_updated":"2025-01-09T09:12:07Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"06","file":[{"date_updated":"2025-01-09T09:12:07Z","file_name":"2024_AngewChemieIntern_Fiedler.pdf","checksum":"1572a0f4d2df55751761efeb2d11c7fc","relation":"main_file","file_size":16347226,"file_id":"18797","date_created":"2025-01-09T09:12:07Z","access_level":"open_access","success":1,"content_type":"application/pdf","creator":"dernst"}],"acknowledgement":"ISTA and the Werner Siemens Foundation financially supported this work. The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility and the Lab Support Facility (LSF). Dr. Krishnendu Maji at ISTA aided in this work through XRD analysis of the crystal phase of SnSe. Y.L. acknowledges funding from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411, the National Natural Science Foundation of China (NSFC) (Grants No. 22209034). M.C. received funding from the European Union's Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 665385.","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NMR"},{"_id":"LifeSc"}],"OA_type":"hybrid","external_id":{"pmid":["38623865"],"isi":["001223768400001"]},"publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]}},{"day":"01","_id":"17053","ec_funded":1,"title":"Ternary simulation as abstract interpretation (Work in Progress)","OA_place":"repository","publication":"27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems","quality_controlled":"1","date_created":"2024-05-26T22:00:58Z","abstract":[{"lang":"eng","text":"We introduce a formalization of ternary simulation as abstract interpretation along with a widening operator to speed up convergence. With the same goal, we present a subsumption algorithm that can determine termination earlier than the usual approach using hash sets. Additionally, we introduce a narrowing operator that utilizes recent advances in backbone extraction, allowing to increase the overapproximation precision in simulation at any time. The experiments evaluate the presented techniques in the context of hardware model checking."}],"main_file_link":[{"url":"https://cca.informatik.uni-freiburg.de/papers/FroleyksYuBiere-MBMV24.pdf","open_access":"1"}],"oa":1,"year":"2024","date_published":"2024-02-01T00:00:00Z","language":[{"iso":"eng"}],"citation":{"ista":"Froleyks N, Yu E, Biere A. 2024. Ternary simulation as abstract interpretation (Work in Progress). 27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems. MBMV: Methods and Description Languages for Modeling and Verification of Circuits and Systems, 148–151.","ieee":"N. Froleyks, E. Yu, and A. Biere, “Ternary simulation as abstract interpretation (Work in Progress),” in <i>27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems</i>, Kaiserslautern, Germany, 2024, pp. 148–151.","short":"N. Froleyks, E. Yu, A. Biere, in:, 27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems, 2024, pp. 148–151.","mla":"Froleyks, Nils, et al. “Ternary Simulation as Abstract Interpretation (Work in Progress).” <i>27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems</i>, 2024, pp. 148–51.","ama":"Froleyks N, Yu E, Biere A. Ternary simulation as abstract interpretation (Work in Progress). In: <i>27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems</i>. ; 2024:148-151.","apa":"Froleyks, N., Yu, E., &#38; Biere, A. (2024). Ternary simulation as abstract interpretation (Work in Progress). In <i>27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems</i> (pp. 148–151). Kaiserslautern, Germany.","chicago":"Froleyks, Nils, Emily Yu, and Armin Biere. “Ternary Simulation as Abstract Interpretation (Work in Progress).” In <i>27th Workshop on Methods and Description Languages for Modeling and Verification of Circuits and Systems</i>, 148–51, 2024."},"project":[{"name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","call_identifier":"H2020","grant_number":"101020093"}],"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","conference":{"end_date":"2024-02-15","start_date":"2024-02-14","location":"Kaiserslautern, Germany","name":"MBMV: Methods and Description Languages for Modeling and Verification of Circuits and Systems"},"publication_identifier":{"isbn":["9783800762682"]},"page":"148-151","acknowledgement":"This work is supported by the Austrian Science Fund (FWF) under the project W1255-N23, the LIT AI Lab funded by the State of Upper Austria, the ERC-2020-AdG 101020093 and by a gift from Intel Corporation.","OA_type":"green","status":"public","type":"conference","oa_version":"Submitted Version","publication_status":"published","article_processing_charge":"No","author":[{"last_name":"Froleyks","full_name":"Froleyks, Nils","first_name":"Nils"},{"id":"20aa2ae8-f2f1-11ed-bbfa-8205053f1342","orcid":"0000-0002-4993-773X","first_name":"Zhengqi","full_name":"Yu, Zhengqi","last_name":"Yu"},{"last_name":"Biere","full_name":"Biere, Armin","first_name":"Armin"}],"department":[{"_id":"ToHe"}],"date_updated":"2026-01-05T14:05:35Z"},{"date_published":"2024-10-01T00:00:00Z","issue":"5","year":"2024","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"date_created":"2024-05-26T22:00:58Z","abstract":[{"lang":"eng","text":"Photoisomerization and photoluminescence are two distinct energy dissipation pathways in light-driven molecular motors. The photoisomerization properties of discrete molecular motors have been well established in solution, but their photoluminescent properties have been rarely reported—especially in aggregates. Here, it is shown that an overcrowded alkene-based molecular motor exhibits distinct dynamic properties in solution and aggregate states, for example, gel and solid states. Despite the poor emissive properties of molecular motors in solution, a bright emission is observed in the aggregate states, including in gel and the crystalline solid. The emission wavelength is highly dependent on the nature of the supramolecular packing and order in the aggregates. As a result, the fluorescent color can be readily tuned reversibly via mechanical grinding and vapor fuming, which provides a new platform for developing multi-stimuli functional materials."}],"intvolume":"         5","quality_controlled":"1","publication":"Aggregate","volume":5,"OA_place":"publisher","title":"Multi-state photoluminescent properties of an overcrowded alkene-based molecular motor in aggregates","article_type":"original","_id":"17054","day":"01","publisher":"Wiley","ddc":["540"],"date_updated":"2025-01-09T09:41:53Z","department":[{"_id":"RaKl"}],"author":[{"first_name":"Yahan","full_name":"Shan, Yahan","last_name":"Shan"},{"last_name":"Sheng","full_name":"Sheng, Jinyu","first_name":"Jinyu","id":"639f0526-27c9-11ee-95a6-966cd7f102d8"},{"first_name":"Qi","full_name":"Zhang, Qi","last_name":"Zhang"},{"first_name":"Marc C.A.","full_name":"Stuart, Marc C.A.","last_name":"Stuart"},{"first_name":"Da Hui","last_name":"Qu","full_name":"Qu, Da Hui"},{"last_name":"Feringa","full_name":"Feringa, Ben L.","first_name":"Ben L."}],"article_processing_charge":"Yes","doi":"10.1002/agt2.584","publication_status":"published","oa_version":"Published Version","type":"journal_article","status":"public","OA_type":"gold","file":[{"file_id":"18804","success":1,"access_level":"open_access","date_created":"2025-01-09T09:38:51Z","creator":"dernst","content_type":"application/pdf","date_updated":"2025-01-09T09:38:51Z","file_name":"2024_Aggregate_Shan.pdf","relation":"main_file","checksum":"1e79dc81d0edf0b441ef661a1890bbf5","file_size":2299084}],"acknowledgement":"This work was supported by the National Natural Science Foundation of China (grant nos. 22220102004, 22025503), Shanghai Municipal Science and Technology Major Project (grant no. 2018SHZDZX03), the Innovation Program of Shanghai Municipal Education Commission (2023ZKZD40), the Fundamental Research Funds for the Central Universities, the Program of Introducing Talents of Discipline to Universities (grant no. B16017), Science and Technology Commission of Shanghai Municipality (grant no. 21JC1401700), and the Starry Night Science Fund of Zhejiang University Shanghai Institute for Advanced Study (grant no. SN-ZJU-SIAS-006), China Scholarship Council (CSC PhD Fellowship No. 202006745016 to Yahan Shan). The authors gratefully acknowledge financial support from the Dutch Ministry of Education, Culture and Science (gravitation program no. 024.001.035 to Ben L. Feringa). The authors thank Dr. Youxin Fu and Dr. Alexander Ryabchun for the help with fluorescence quantum yield measurement, Cristina Nitu for the help with photoisomerzation quantum yield measurement, Prof. Wesley R. Browne for the help with fluorescence lifetime measurement, and Dr. Jianyu Zhang for fruitful discussion and revising the manuscript.","publication_identifier":{"issn":["2766-8541"],"eissn":["2692-4560"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"10","scopus_import":"1","file_date_updated":"2025-01-09T09:38:51Z","article_number":"e584","has_accepted_license":"1","citation":{"mla":"Shan, Yahan, et al. “Multi-State Photoluminescent Properties of an Overcrowded Alkene-Based Molecular Motor in Aggregates.” <i>Aggregate</i>, vol. 5, no. 5, e584, Wiley, 2024, doi:<a href=\"https://doi.org/10.1002/agt2.584\">10.1002/agt2.584</a>.","ista":"Shan Y, Sheng J, Zhang Q, Stuart MCA, Qu DH, Feringa BL. 2024. Multi-state photoluminescent properties of an overcrowded alkene-based molecular motor in aggregates. Aggregate. 5(5), e584.","ieee":"Y. Shan, J. Sheng, Q. Zhang, M. C. A. Stuart, D. H. Qu, and B. L. Feringa, “Multi-state photoluminescent properties of an overcrowded alkene-based molecular motor in aggregates,” <i>Aggregate</i>, vol. 5, no. 5. Wiley, 2024.","short":"Y. Shan, J. Sheng, Q. Zhang, M.C.A. Stuart, D.H. Qu, B.L. Feringa, Aggregate 5 (2024).","chicago":"Shan, Yahan, Jinyu Sheng, Qi Zhang, Marc C.A. Stuart, Da Hui Qu, and Ben L. Feringa. “Multi-State Photoluminescent Properties of an Overcrowded Alkene-Based Molecular Motor in Aggregates.” <i>Aggregate</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/agt2.584\">https://doi.org/10.1002/agt2.584</a>.","apa":"Shan, Y., Sheng, J., Zhang, Q., Stuart, M. C. A., Qu, D. H., &#38; Feringa, B. L. (2024). Multi-state photoluminescent properties of an overcrowded alkene-based molecular motor in aggregates. <i>Aggregate</i>. Wiley. <a href=\"https://doi.org/10.1002/agt2.584\">https://doi.org/10.1002/agt2.584</a>","ama":"Shan Y, Sheng J, Zhang Q, Stuart MCA, Qu DH, Feringa BL. Multi-state photoluminescent properties of an overcrowded alkene-based molecular motor in aggregates. <i>Aggregate</i>. 2024;5(5). doi:<a href=\"https://doi.org/10.1002/agt2.584\">10.1002/agt2.584</a>"},"language":[{"iso":"eng"}]},{"quality_controlled":"1","abstract":[{"text":"How the coordination of neuronal spiking and brain rhythms between hippocampal subregions supports memory function remains elusive. We studied the interregional coordination of CA3 neuronal spiking with CA1 theta oscillations by recording electrophysiological signals along the proximodistal axis of the hippocampus in rats that were performing a high-memory-demand recognition memory task adapted from humans. We found that CA3 population spiking occurs preferentially at the peak of distal CA1 theta oscillations when memory was tested but only when previously encountered stimuli were presented. In addition, decoding analyses revealed that only population cell firing of proximal CA3 together with that of distal CA1 can predict performance at test in the present non-spatial task. Overall, our work demonstrates an important role for the synchronization of CA3 neuronal activity with CA1 theta oscillations during memory testing.","lang":"eng"}],"date_created":"2024-06-02T22:00:56Z","intvolume":"        43","year":"2024","issue":"6","date_published":"2024-06-25T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"publisher":"Elsevier","day":"25","_id":"17089","ddc":["570"],"publication":"Cell Reports","article_type":"original","title":"Phase locking of hippocampal CA3 neurons to distal CA1 theta oscillations selectively predicts memory performance","volume":43,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.1016/j.celrep.2024.114276","status":"public","isi":1,"department":[{"_id":"JoCs"}],"date_updated":"2025-09-08T07:42:25Z","article_processing_charge":"Yes (in subscription journal)","author":[{"full_name":"Ku, Shih Pi","last_name":"Ku","first_name":"Shih Pi"},{"last_name":"Atucha","full_name":"Atucha, Erika","first_name":"Erika"},{"full_name":"Alavi, Nico","last_name":"Alavi","first_name":"Nico"},{"last_name":"Mulla-Osman","full_name":"Mulla-Osman, Halla","first_name":"Halla"},{"full_name":"Kayumova, Rukhshona","last_name":"Kayumova","first_name":"Rukhshona"},{"first_name":"Motoharu","last_name":"Yoshida","full_name":"Yoshida, Motoharu"},{"full_name":"Csicsvari, Jozsef L","last_name":"Csicsvari","first_name":"Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036"},{"first_name":"Magdalena M.","full_name":"Sauvage, Magdalena M.","last_name":"Sauvage"}],"file_date_updated":"2024-06-03T07:12:45Z","scopus_import":"1","language":[{"iso":"eng"}],"citation":{"ama":"Ku SP, Atucha E, Alavi N, et al. Phase locking of hippocampal CA3 neurons to distal CA1 theta oscillations selectively predicts memory performance. <i>Cell Reports</i>. 2024;43(6). doi:<a href=\"https://doi.org/10.1016/j.celrep.2024.114276\">10.1016/j.celrep.2024.114276</a>","apa":"Ku, S. P., Atucha, E., Alavi, N., Mulla-Osman, H., Kayumova, R., Yoshida, M., … Sauvage, M. M. (2024). Phase locking of hippocampal CA3 neurons to distal CA1 theta oscillations selectively predicts memory performance. <i>Cell Reports</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.celrep.2024.114276\">https://doi.org/10.1016/j.celrep.2024.114276</a>","chicago":"Ku, Shih Pi, Erika Atucha, Nico Alavi, Halla Mulla-Osman, Rukhshona Kayumova, Motoharu Yoshida, Jozsef L Csicsvari, and Magdalena M. Sauvage. “Phase Locking of Hippocampal CA3 Neurons to Distal CA1 Theta Oscillations Selectively Predicts Memory Performance.” <i>Cell Reports</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.celrep.2024.114276\">https://doi.org/10.1016/j.celrep.2024.114276</a>.","ieee":"S. P. Ku <i>et al.</i>, “Phase locking of hippocampal CA3 neurons to distal CA1 theta oscillations selectively predicts memory performance,” <i>Cell Reports</i>, vol. 43, no. 6. Elsevier, 2024.","ista":"Ku SP, Atucha E, Alavi N, Mulla-Osman H, Kayumova R, Yoshida M, Csicsvari JL, Sauvage MM. 2024. Phase locking of hippocampal CA3 neurons to distal CA1 theta oscillations selectively predicts memory performance. Cell Reports. 43(6), 114276.","short":"S.P. Ku, E. Atucha, N. Alavi, H. Mulla-Osman, R. Kayumova, M. Yoshida, J.L. Csicsvari, M.M. Sauvage, Cell Reports 43 (2024).","mla":"Ku, Shih Pi, et al. “Phase Locking of Hippocampal CA3 Neurons to Distal CA1 Theta Oscillations Selectively Predicts Memory Performance.” <i>Cell Reports</i>, vol. 43, no. 6, 114276, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.celrep.2024.114276\">10.1016/j.celrep.2024.114276</a>."},"has_accepted_license":"1","article_number":"114276","publication_identifier":{"eissn":["2211-1247"]},"acknowledgement":"We would like to thank J. Maiwald for her assistance in animal behavior training, experiments, and brain slice preparation; D. Koch for her assistance in recording drive building and brain slicing; K. Kaefer and J. Wallenschus (IST Austria) for their initial technical support; S. Mikulovich for her comments on an early version of the manuscript; C. Reichert for his comments on SVM analyses; and J. Pakan for English proofreading. This project is funded by the DFG (CRC 779 and CRC 1436).","file":[{"file_name":"2024_CellReports_Ku.pdf","date_updated":"2024-06-03T07:12:45Z","file_size":4371015,"checksum":"9b43f8ca5e5a12ae96e3fb9df06385c1","relation":"main_file","date_created":"2024-06-03T07:12:45Z","access_level":"open_access","success":1,"file_id":"17096","creator":"dernst","content_type":"application/pdf"}],"external_id":{"isi":["001252792600001"]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"06"},{"status":"public","isi":1,"oa_version":"Submitted Version","type":"journal_article","doi":"10.1126/science.adj0343","publication_status":"published","author":[{"full_name":"Heintz, Kasper E.","last_name":"Heintz","first_name":"Kasper E."},{"full_name":"Watson, Darach","last_name":"Watson","first_name":"Darach"},{"first_name":"Gabriel","last_name":"Brammer","full_name":"Brammer, Gabriel"},{"last_name":"Vejlgaard","full_name":"Vejlgaard, Simone","first_name":"Simone"},{"first_name":"Anne","last_name":"Hutter","full_name":"Hutter, Anne"},{"last_name":"Strait","full_name":"Strait, Victoria B.","first_name":"Victoria B."},{"full_name":"Matthee, Jorryt J","last_name":"Matthee","orcid":"0000-0003-2871-127X","id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J"},{"last_name":"Oesch","full_name":"Oesch, Pascal A.","first_name":"Pascal A."},{"full_name":"Jakobsson, Páll","last_name":"Jakobsson","first_name":"Páll"},{"last_name":"Tanvir","full_name":"Tanvir, Nial R.","first_name":"Nial R."},{"last_name":"Laursen","full_name":"Laursen, Peter","first_name":"Peter"},{"first_name":"Rohan P.","full_name":"Naidu, Rohan P.","last_name":"Naidu"},{"last_name":"Mason","full_name":"Mason, Charlotte A.","first_name":"Charlotte A."},{"first_name":"Meghana","full_name":"Killi, Meghana","last_name":"Killi"},{"last_name":"Jung","full_name":"Jung, Intae","first_name":"Intae"},{"full_name":"Hsiao, Tiger Yu Yang","last_name":"Hsiao","first_name":"Tiger Yu Yang"},{"first_name":"Unknown","last_name":"Abdurro’Uf","full_name":"Abdurro’Uf, Unknown"},{"first_name":"Dan","last_name":"Coe","full_name":"Coe, Dan"},{"last_name":"Haro","full_name":"Haro, Pablo Arrabal","first_name":"Pablo Arrabal"},{"full_name":"Finkelstein, Steven L.","last_name":"Finkelstein","first_name":"Steven L."},{"last_name":"Toft","full_name":"Toft, Sune","first_name":"Sune"}],"article_processing_charge":"No","department":[{"_id":"JoMa"}],"date_updated":"2025-09-08T07:43:13Z","language":[{"iso":"eng"}],"citation":{"ama":"Heintz KE, Watson D, Brammer G, et al. Strong damped Lyman-a absorption in young star-forming galaxies at redshifts 9 to 11. <i>Science</i>. 2024;384(6698):890-894. doi:<a href=\"https://doi.org/10.1126/science.adj0343\">10.1126/science.adj0343</a>","chicago":"Heintz, Kasper E., Darach Watson, Gabriel Brammer, Simone Vejlgaard, Anne Hutter, Victoria B. Strait, Jorryt J Matthee, et al. “Strong Damped Lyman-a Absorption in Young Star-Forming Galaxies at Redshifts 9 to 11.” <i>Science</i>. AAAS, 2024. <a href=\"https://doi.org/10.1126/science.adj0343\">https://doi.org/10.1126/science.adj0343</a>.","apa":"Heintz, K. E., Watson, D., Brammer, G., Vejlgaard, S., Hutter, A., Strait, V. B., … Toft, S. (2024). Strong damped Lyman-a absorption in young star-forming galaxies at redshifts 9 to 11. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.adj0343\">https://doi.org/10.1126/science.adj0343</a>","mla":"Heintz, Kasper E., et al. “Strong Damped Lyman-a Absorption in Young Star-Forming Galaxies at Redshifts 9 to 11.” <i>Science</i>, vol. 384, no. 6698, AAAS, 2024, pp. 890–94, doi:<a href=\"https://doi.org/10.1126/science.adj0343\">10.1126/science.adj0343</a>.","ista":"Heintz KE, Watson D, Brammer G, Vejlgaard S, Hutter A, Strait VB, Matthee JJ, Oesch PA, Jakobsson P, Tanvir NR, Laursen P, Naidu RP, Mason CA, Killi M, Jung I, Hsiao TYY, Abdurro’Uf U, Coe D, Haro PA, Finkelstein SL, Toft S. 2024. Strong damped Lyman-a absorption in young star-forming galaxies at redshifts 9 to 11. Science. 384(6698), 890–894.","ieee":"K. E. Heintz <i>et al.</i>, “Strong damped Lyman-a absorption in young star-forming galaxies at redshifts 9 to 11,” <i>Science</i>, vol. 384, no. 6698. AAAS, pp. 890–894, 2024.","short":"K.E. Heintz, D. Watson, G. Brammer, S. Vejlgaard, A. Hutter, V.B. Strait, J.J. Matthee, P.A. Oesch, P. Jakobsson, N.R. Tanvir, P. Laursen, R.P. Naidu, C.A. Mason, M. Killi, I. Jung, T.Y.Y. Hsiao, U. Abdurro’Uf, D. Coe, P.A. Haro, S.L. Finkelstein, S. Toft, Science 384 (2024) 890–894."},"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"05","publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]},"external_id":{"pmid":["38781391"],"isi":["001230029500001"]},"OA_type":"green","page":"890-894","acknowledgement":"K.E.H. acknowledges support from Carlsberg Foundation Reintegration Fellowship grant CF21-0103. A.H. acknowledges support from the VILLUM FONDEN under grant 37459. C.A.M. acknowledges support from the VILLUM FONDEN under grant 37459 and the Carlsberg Foundation under grant CF22-1322. N.R.T. was funded through Science and Technology Facilities Council (STFC) consolidated grant ST/W000857/1. R.P.N. acknowledges funding from JWST programs GO-1933 and GO-2279. R.P.N. was supported by the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy under NASA contract NAS5-26555. P.A.O. received funding from the Swiss State Secretariat for Education, Research, and Innovation (SERI) under contract number MB22.00072 and from the Swiss National Science Foundation (SNSF) through project grant 200020_207349.","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://figshare.com/articles/journal_contribution/Strong_damped_Lyman-_absorption_in_young_star-forming_galaxies_at_redshifts_9_to_11/26069122?file=47174584"}],"date_created":"2024-06-02T22:00:56Z","abstract":[{"lang":"eng","text":"Primordial neutral atomic gas, mostly composed of hydrogen, is the raw material for star formation in galaxies. However, there are few direct constraints on the amount of neutral atomic hydrogen (H i) in galaxies at early cosmic times. We analyzed James Webb Space Telescope (JWST) near-infrared spectroscopy of distant galaxies, at redshifts ≳8. From a sample of 12 galaxies, we identified three that show strong damped Lyman-α absorption due to H i in their local surroundings. The galaxies are located at spectroscopic redshifts of 8.8, 10.2, and 11.4, corresponding to 400 to 600 million years after the Big Bang. They have H i column densities ≳1022 cm−2, which is an order of magnitude higher than expected for a fully neutral intergalactic medium, and constitute a gas-rich population of young star-forming galaxies."}],"intvolume":"       384","oa":1,"issue":"6698","year":"2024","date_published":"2024-05-24T00:00:00Z","pmid":1,"day":"24","publisher":"AAAS","_id":"17090","article_type":"original","title":"Strong damped Lyman-a absorption in young star-forming galaxies at redshifts 9 to 11","OA_place":"repository","volume":384,"publication":"Science"},{"year":"2024","issue":"6698","date_published":"2024-05-24T00:00:00Z","quality_controlled":"1","intvolume":"       384","date_created":"2024-06-02T22:00:57Z","abstract":[{"text":"DNA sequences are connected to genes and functions in the developing and adult brain","lang":"eng"}],"publication":"Science","article_type":"letter_note","title":"Mapping the brain’s gene-regulatory maze","volume":384,"publisher":"AAAS","day":"24","_id":"17091","pmid":1,"department":[{"_id":"GaNo"}],"date_updated":"2025-09-08T07:40:10Z","author":[{"last_name":"Novarino","full_name":"Novarino, Gaia","first_name":"Gaia","orcid":"0000-0002-7673-7178","id":"3E57A680-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Christoph","full_name":"Bock, Christoph","last_name":"Bock"}],"article_processing_charge":"No","type":"journal_article","oa_version":"None","publication_status":"published","doi":"10.1126/science.adp4663","status":"public","isi":1,"publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]},"page":"860-861","external_id":{"isi":["001230076500007"],"pmid":["38781359"]},"month":"05","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","scopus_import":"1","language":[{"iso":"eng"}],"citation":{"ieee":"G. Novarino and C. Bock, “Mapping the brain’s gene-regulatory maze,” <i>Science</i>, vol. 384, no. 6698. AAAS, pp. 860–861, 2024.","short":"G. Novarino, C. Bock, Science 384 (2024) 860–861.","ista":"Novarino G, Bock C. 2024. Mapping the brain’s gene-regulatory maze. Science. 384(6698), 860–861.","mla":"Novarino, Gaia, and Christoph Bock. “Mapping the Brain’s Gene-Regulatory Maze.” <i>Science</i>, vol. 384, no. 6698, AAAS, 2024, pp. 860–61, doi:<a href=\"https://doi.org/10.1126/science.adp4663\">10.1126/science.adp4663</a>.","ama":"Novarino G, Bock C. Mapping the brain’s gene-regulatory maze. <i>Science</i>. 2024;384(6698):860-861. doi:<a href=\"https://doi.org/10.1126/science.adp4663\">10.1126/science.adp4663</a>","apa":"Novarino, G., &#38; Bock, C. (2024). Mapping the brain’s gene-regulatory maze. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.adp4663\">https://doi.org/10.1126/science.adp4663</a>","chicago":"Novarino, Gaia, and Christoph Bock. “Mapping the Brain’s Gene-Regulatory Maze.” <i>Science</i>. AAAS, 2024. <a href=\"https://doi.org/10.1126/science.adp4663\">https://doi.org/10.1126/science.adp4663</a>."}},{"scopus_import":"1","file_date_updated":"2024-06-03T06:34:21Z","has_accepted_license":"1","article_number":"e0846232024","citation":{"mla":"Delamare, Geoffroy, et al. “Intrinsic Neural Excitability Biases Allocation and Overlap of Memory Engrams.” <i>Journal of Neuroscience</i>, vol. 44, no. 21, e0846232024, Society for Neuroscience, 2024, doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.0846-23.2024\">10.1523/JNEUROSCI.0846-23.2024</a>.","ieee":"G. Delamare, D. Feitosa Tomé, and C. Clopath, “Intrinsic neural excitability biases allocation and overlap of memory engrams,” <i>Journal of Neuroscience</i>, vol. 44, no. 21. Society for Neuroscience, 2024.","short":"G. Delamare, D. Feitosa Tomé, C. Clopath, Journal of Neuroscience 44 (2024).","ista":"Delamare G, Feitosa Tomé D, Clopath C. 2024. Intrinsic neural excitability biases allocation and overlap of memory engrams. Journal of Neuroscience. 44(21), e0846232024.","ama":"Delamare G, Feitosa Tomé D, Clopath C. Intrinsic neural excitability biases allocation and overlap of memory engrams. <i>Journal of Neuroscience</i>. 2024;44(21). doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.0846-23.2024\">10.1523/JNEUROSCI.0846-23.2024</a>","chicago":"Delamare, Geoffroy, Douglas Feitosa Tomé, and Claudia Clopath. “Intrinsic Neural Excitability Biases Allocation and Overlap of Memory Engrams.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2024. <a href=\"https://doi.org/10.1523/JNEUROSCI.0846-23.2024\">https://doi.org/10.1523/JNEUROSCI.0846-23.2024</a>.","apa":"Delamare, G., Feitosa Tomé, D., &#38; Clopath, C. (2024). Intrinsic neural excitability biases allocation and overlap of memory engrams. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/JNEUROSCI.0846-23.2024\">https://doi.org/10.1523/JNEUROSCI.0846-23.2024</a>"},"language":[{"iso":"eng"}],"external_id":{"pmid":["38561228"],"isi":["001249681000008"]},"file":[{"relation":"main_file","checksum":"4e19159800db605b802c721e4d4b1ffe","file_size":920354,"file_name":"2024_JourNeuroscience_Delamare.pdf","date_updated":"2024-06-03T06:34:21Z","creator":"dernst","content_type":"application/pdf","file_id":"17095","success":1,"access_level":"open_access","date_created":"2024-06-03T06:34:21Z"}],"acknowledgement":"We thank Sadra Sadeh and Inês Completo Guerreiro for helpful comments on the manuscript, Yosif Zaki and Denise J. Cai for useful feedback and members of the Clopath lab for discussion and support. This work was supported by Biotechnology and Biological Sciences Research Council (BB/N013956/1 awarded to C.C.), Wellcome Trust (200790/Z/16/Z awarded to C.C.), the Simons Foundation (564408 awarded to C.C.), and Engineering and Physical Sciences Research Council (EP/R035806/1 awarded to C.C.).","publication_identifier":{"eissn":["1529-2401"],"issn":["0270-6474"]},"month":"05","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1523/JNEUROSCI.0846-23.2024","publication_status":"published","oa_version":"Published Version","type":"journal_article","isi":1,"status":"public","date_updated":"2025-09-08T07:40:58Z","department":[{"_id":"TiVo"}],"author":[{"first_name":"Geoffroy","last_name":"Delamare","full_name":"Delamare, Geoffroy"},{"full_name":"Feitosa Tomé, Douglas","last_name":"Feitosa Tomé","id":"0eed2d40-3d48-11ec-8d38-f789cc2e40b2","first_name":"Douglas"},{"first_name":"Claudia","last_name":"Clopath","full_name":"Clopath, Claudia"}],"article_processing_charge":"Yes (in subscription journal)","_id":"17092","day":"22","publisher":"Society for Neuroscience","ddc":["570"],"pmid":1,"publication":"Journal of Neuroscience","volume":44,"title":"Intrinsic neural excitability biases allocation and overlap of memory engrams","article_type":"original","date_created":"2024-06-02T22:00:57Z","abstract":[{"text":"Memories are thought to be stored in neural ensembles known as engrams that are specifically reactivated during memory recall. Recent studies have found that memory engrams of two events that happened close in time tend to overlap in the hippocampus and the amygdala, and these overlaps have been shown to support memory linking. It has been hypothesized that engram overlaps arise from the mechanisms that regulate memory allocation itself, involving neural excitability, but the exact process remains unclear. Indeed, most theoretical studies focus on synaptic plasticity and little is known about the role of intrinsic plasticity, which could be mediated by neural excitability and serve as a complementary mechanism for forming memory engrams. Here, we developed a rate-based recurrent neural network that includes both synaptic plasticity and neural excitability. We obtained structural and functional overlap of memory engrams for contexts that are presented close in time, consistent with experimental and computational studies. We then investigated the role of excitability in memory allocation at the network level and unveiled competitive mechanisms driven by inhibition. This work suggests mechanisms underlying the role of intrinsic excitability in memory allocation and linking, and yields predictions regarding the formation and the overlap of memory engrams.","lang":"eng"}],"intvolume":"        44","quality_controlled":"1","date_published":"2024-05-22T00:00:00Z","issue":"21","year":"2024","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1}]