[{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2023-08-01T00:00:00Z","article_number":"5","date_updated":"2025-04-14T12:58:27Z","title":"Unified treatment of contact, friction and shock-propagation in rigid body animation","article_processing_charge":"No","year":"2023","publication_status":"published","author":[{"last_name":"Chen","first_name":"Yi-Lu","id":"0b467602-dbcd-11ea-9d1d-ed480aa46b70","full_name":"Chen, Yi-Lu"},{"full_name":"Ly, Mickaël","id":"6340d7f0-b48d-11eb-b10d-b7487e71d9f1","first_name":"Mickaël","last_name":"Ly"},{"id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","full_name":"Wojtan, Christopher J","orcid":"0000-0001-6646-5546","last_name":"Wojtan","first_name":"Christopher J"}],"type":"conference_abstract","conference":{"name":"SCA: Symposium on Computer Animation","location":"Los Angeles, CA, United States","start_date":"2023-08-04","end_date":"2023-08-06"},"publication_identifier":{"isbn":["9798400702686"]},"acknowledgement":"We thank the anonymous reviewers and the members of the Visual Computing Group at ISTA for their helpful comments. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing, and was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA).","related_material":{"record":[{"status":"public","id":"15292","relation":"other"}]},"day":"01","_id":"14748","acknowledged_ssus":[{"_id":"ScienComp"}],"oa_version":"None","corr_author":"1","month":"08","publication":"Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation","quality_controlled":"1","status":"public","language":[{"iso":"eng"}],"project":[{"_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","grant_number":"101045083"}],"doi":"10.1145/3606037.3606836","citation":{"short":"Y.-L. Chen, M. Ly, C. Wojtan, in:, Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation, Association for Computing Machinery, 2023.","chicago":"Chen, Yi-Lu, Mickaël Ly, and Chris Wojtan. “Unified Treatment of Contact, Friction and Shock-Propagation in Rigid Body Animation.” In <i>Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3606037.3606836\">https://doi.org/10.1145/3606037.3606836</a>.","apa":"Chen, Y.-L., Ly, M., &#38; Wojtan, C. (2023). Unified treatment of contact, friction and shock-propagation in rigid body animation. In <i>Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation</i>. Los Angeles, CA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3606037.3606836\">https://doi.org/10.1145/3606037.3606836</a>","ista":"Chen Y-L, Ly M, Wojtan C. 2023. Unified treatment of contact, friction and shock-propagation in rigid body animation. Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation. SCA: Symposium on Computer Animation, 5.","ama":"Chen Y-L, Ly M, Wojtan C. Unified treatment of contact, friction and shock-propagation in rigid body animation. In: <i>Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation</i>. Association for Computing Machinery; 2023. doi:<a href=\"https://doi.org/10.1145/3606037.3606836\">10.1145/3606037.3606836</a>","mla":"Chen, Yi-Lu, et al. “Unified Treatment of Contact, Friction and Shock-Propagation in Rigid Body Animation.” <i>Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation</i>, 5, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3606037.3606836\">10.1145/3606037.3606836</a>.","ieee":"Y.-L. Chen, M. Ly, and C. Wojtan, “Unified treatment of contact, friction and shock-propagation in rigid body animation,” in <i>Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation</i>, Los Angeles, CA, United States, 2023."},"date_created":"2024-01-08T13:00:24Z","department":[{"_id":"ChWo"}],"publisher":"Association for Computing Machinery"},{"oa":1,"ec_funded":1,"isi":1,"type":"journal_article","page":"2981-3009","date_published":"2023-08-01T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_status":"published","year":"2023","article_processing_charge":"No","keyword":["Statistics","Probability and Uncertainty","Statistics and Probability"],"intvolume":"        33","language":[{"iso":"eng"}],"publisher":"Institute of Mathematical Statistics","abstract":[{"lang":"eng","text":"Consider the random matrix model A1/2UBU∗A1/2, where A and B are two N × N deterministic matrices and U is either an N × N Haar unitary or orthogonal random matrix. It is well known that on the macroscopic scale (Invent. Math. 104 (1991) 201–220), the limiting empirical spectral distribution (ESD) of the above model is given by the free multiplicative convolution\r\nof the limiting ESDs of A and B, denoted as μα \u0002 μβ, where μα and μβ are the limiting ESDs of A and B, respectively. In this paper, we study the asymptotic microscopic behavior of the edge eigenvalues and eigenvectors statistics. We prove that both the density of μA \u0002μB, where μA and μB are the ESDs of A and B, respectively and the associated subordination functions\r\nhave a regular behavior near the edges. Moreover, we establish the local laws near the edges on the optimal scale. In particular, we prove that the entries of the resolvent are close to some functionals depending only on the eigenvalues of A, B and the subordination functions with optimal convergence rates. Our proofs and calculations are based on the techniques developed for the additive model A+UBU∗ in (J. Funct. Anal. 271 (2016) 672–719; Comm. Math.\r\nPhys. 349 (2017) 947–990; Adv. Math. 319 (2017) 251–291; J. Funct. Anal. 279 (2020) 108639), and our results can be regarded as the counterparts of (J. Funct. Anal. 279 (2020) 108639) for the multiplicative model. "}],"date_created":"2024-01-08T13:03:18Z","status":"public","month":"08","corr_author":"1","publication":"The Annals of Applied Probability","issue":"4","external_id":{"arxiv":["2010.16083"],"isi":["001031710500012"]},"arxiv":1,"day":"01","publication_identifier":{"issn":["1050-5164"]},"article_type":"original","acknowledgement":"The first author is partially supported by NSF Grant DMS-2113489 and grateful for the AMS-SIMONS travel grant (2020–2023). The second author is supported by the ERC Advanced Grant “RMTBeyond” No. 101020331.\r\nThe authors would like to thank the Editor, Associate Editor and an anonymous referee for their many critical suggestions which have significantly improved the paper. We also want to thank Zhigang Bao and Ji Oon Lee for many helpful discussions and comments.","title":"Local laws for multiplication of random matrices","date_updated":"2025-09-09T14:12:00Z","author":[{"full_name":"Ding, Xiucai","first_name":"Xiucai","last_name":"Ding"},{"first_name":"Hong Chang","last_name":"Ji","id":"dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d","full_name":"Ji, Hong Chang"}],"doi":"10.1214/22-aap1882","citation":{"chicago":"Ding, Xiucai, and Hong Chang Ji. “Local Laws for Multiplication of Random Matrices.” <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2023. <a href=\"https://doi.org/10.1214/22-aap1882\">https://doi.org/10.1214/22-aap1882</a>.","short":"X. Ding, H.C. Ji, The Annals of Applied Probability 33 (2023) 2981–3009.","ieee":"X. Ding and H. C. Ji, “Local laws for multiplication of random matrices,” <i>The Annals of Applied Probability</i>, vol. 33, no. 4. Institute of Mathematical Statistics, pp. 2981–3009, 2023.","mla":"Ding, Xiucai, and Hong Chang Ji. “Local Laws for Multiplication of Random Matrices.” <i>The Annals of Applied Probability</i>, vol. 33, no. 4, Institute of Mathematical Statistics, 2023, pp. 2981–3009, doi:<a href=\"https://doi.org/10.1214/22-aap1882\">10.1214/22-aap1882</a>.","ista":"Ding X, Ji HC. 2023. Local laws for multiplication of random matrices. The Annals of Applied Probability. 33(4), 2981–3009.","apa":"Ding, X., &#38; Ji, H. C. (2023). Local laws for multiplication of random matrices. <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/22-aap1882\">https://doi.org/10.1214/22-aap1882</a>","ama":"Ding X, Ji HC. Local laws for multiplication of random matrices. <i>The Annals of Applied Probability</i>. 2023;33(4):2981-3009. doi:<a href=\"https://doi.org/10.1214/22-aap1882\">10.1214/22-aap1882</a>"},"project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"volume":33,"scopus_import":"1","department":[{"_id":"LaEr"}],"oa_version":"Preprint","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2010.16083"}],"_id":"14750"},{"keyword":["General Earth and Planetary Sciences"],"article_processing_charge":"Yes","year":"2023","publication_status":"published","file":[{"date_updated":"2024-01-09T08:51:25Z","success":1,"file_id":"14761","file_size":24149551,"access_level":"open_access","content_type":"application/pdf","date_created":"2024-01-09T08:51:25Z","relation":"main_file","file_name":"2023_AGUAdvances_Fildier.pdf","checksum":"af773220a9fa194c61a8dc2fae092c16","creator":"dernst"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_number":"e2023AV000880","date_published":"2023-06-01T00:00:00Z","type":"journal_article","isi":1,"ec_funded":1,"oa":1,"issue":"3","publication":"AGU Advances","month":"06","ddc":["550"],"status":"public","date_created":"2024-01-08T13:07:49Z","abstract":[{"text":"Radiative cooling of the lowest atmospheric levels is of strong importance for modulating atmospheric circulations and organizing convection, but detailed observations and a robust theoretical understanding are lacking. Here we use unprecedented observational constraints from subsidence regimes in the tropical Atlantic to develop a theory for the shape and magnitude of low‐level longwave radiative cooling in clear‐sky, showing peaks larger than 5–10 K/day at the top of the boundary layer. A suite of novel scaling approximations is first developed from simplified spectral theory, in close agreement with the measurements. The radiative cooling peak height is set by the maximum lapse rate in water vapor path, and its magnitude is mainly controlled by the ratio of column relative humidity above and below the peak. We emphasize how elevated intrusions of moist air can reduce low‐level cooling, by sporadically shading the spectral range which effectively cools to space. The efficiency of this spectral shading depends both on water content and altitude of moist intrusions; its height dependence cannot be explained by the temperature difference between the emitting and absorbing layers, but by the decrease of water vapor extinction with altitude. This analytical work can help to narrow the search for low‐level cloud patterns sensitive to radiative‐convective feedbacks: the most organized patterns with largest cloud fractions occur in atmospheres below 10% relative humidity and feel the strongest low‐level cooling. This motivates further assessment of favorable conditions for radiative‐convective feedbacks and a robust quantification of corresponding shallow cloud dynamics in current and warmer climates.","lang":"eng"}],"has_accepted_license":"1","publisher":"American Geophysical Union","language":[{"iso":"eng"}],"intvolume":"         4","author":[{"last_name":"Fildier","first_name":"B.","full_name":"Fildier, B."},{"full_name":"Muller, Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller","orcid":"0000-0001-5836-5350","first_name":"Caroline J"},{"last_name":"Pincus","first_name":"R.","full_name":"Pincus, R."},{"full_name":"Fueglistaler, S.","last_name":"Fueglistaler","first_name":"S."}],"date_updated":"2025-09-09T14:13:05Z","title":"How moisture shapes low‐level radiative cooling in subsidence regimes","publication_identifier":{"eissn":["2576-604X"]},"acknowledgement":"The authors would like to thank two anonymous reviews and gratefully acknowledge diverse funding agencies and resources used for this work. B.F. and C.M. thank funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, grant agreement no. 805041), and the EUREC4A campaign organizers for giving the opportunity to take part to the campaign and use the data early on. R. P. was supported by the US National Science Foundation (award AGS 19–16908), by the National Oceanic and Atmospheric Administration (award NA200AR4310375), and the Vetlesen Foundation.","article_type":"original","file_date_updated":"2024-01-09T08:51:25Z","day":"01","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","external_id":{"isi":["000989037900001"]},"_id":"14752","oa_version":"Published Version","quality_controlled":"1","department":[{"_id":"CaMu"}],"scopus_import":"1","volume":4,"project":[{"name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","grant_number":"805041","call_identifier":"H2020","_id":"629205d8-2b32-11ec-9570-e1356ff73576"}],"doi":"10.1029/2023av000880","tmp":{"image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"citation":{"apa":"Fildier, B., Muller, C. J., Pincus, R., &#38; Fueglistaler, S. (2023). How moisture shapes low‐level radiative cooling in subsidence regimes. <i>AGU Advances</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2023av000880\">https://doi.org/10.1029/2023av000880</a>","ista":"Fildier B, Muller CJ, Pincus R, Fueglistaler S. 2023. How moisture shapes low‐level radiative cooling in subsidence regimes. AGU Advances. 4(3), e2023AV000880.","ama":"Fildier B, Muller CJ, Pincus R, Fueglistaler S. How moisture shapes low‐level radiative cooling in subsidence regimes. <i>AGU Advances</i>. 2023;4(3). doi:<a href=\"https://doi.org/10.1029/2023av000880\">10.1029/2023av000880</a>","mla":"Fildier, B., et al. “How Moisture Shapes Low‐level Radiative Cooling in Subsidence Regimes.” <i>AGU Advances</i>, vol. 4, no. 3, e2023AV000880, American Geophysical Union, 2023, doi:<a href=\"https://doi.org/10.1029/2023av000880\">10.1029/2023av000880</a>.","ieee":"B. Fildier, C. J. Muller, R. Pincus, and S. Fueglistaler, “How moisture shapes low‐level radiative cooling in subsidence regimes,” <i>AGU Advances</i>, vol. 4, no. 3. American Geophysical Union, 2023.","short":"B. Fildier, C.J. Muller, R. Pincus, S. Fueglistaler, AGU Advances 4 (2023).","chicago":"Fildier, B., Caroline J Muller, R. Pincus, and S. Fueglistaler. “How Moisture Shapes Low‐level Radiative Cooling in Subsidence Regimes.” <i>AGU Advances</i>. American Geophysical Union, 2023. <a href=\"https://doi.org/10.1029/2023av000880\">https://doi.org/10.1029/2023av000880</a>."}},{"author":[{"first_name":"Pietro","last_name":"Faccioli","full_name":"Faccioli, Pietro"},{"full_name":"Krätschmer, Ilse","id":"30d4014e-7753-11eb-b44b-db6d61112e73","first_name":"Ilse","last_name":"Krätschmer","orcid":"0000-0002-5636-9259"},{"full_name":"Lourenço, Carlos","first_name":"Carlos","last_name":"Lourenço"}],"date_updated":"2025-09-09T14:13:46Z","title":"Low-pT quarkonium polarization measurements: Challenges and opportunities","file_date_updated":"2024-01-09T08:59:24Z","acknowledgement":"P.F. and C.L. acknowledge support from Fundação para a Ciência e a Tecnologia, Portugal, under contract CERN/FIS-PAR/0010/2019.\r\nOpen Access funded by SCOAP3.","article_type":"original","publication_identifier":{"eissn":["1873-2445"],"issn":["0370-2693"]},"day":"10","license":"https://creativecommons.org/licenses/by/4.0/","external_id":{"isi":["000967947300001"]},"_id":"14753","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"MaRo"}],"scopus_import":"1","volume":840,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1016/j.physletb.2023.137871","citation":{"chicago":"Faccioli, Pietro, Ilse Krätschmer, and Carlos Lourenço. “Low-PT Quarkonium Polarization Measurements: Challenges and Opportunities.” <i>Physics Letters B</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.physletb.2023.137871\">https://doi.org/10.1016/j.physletb.2023.137871</a>.","short":"P. Faccioli, I. Krätschmer, C. Lourenço, Physics Letters B 840 (2023).","mla":"Faccioli, Pietro, et al. “Low-PT Quarkonium Polarization Measurements: Challenges and Opportunities.” <i>Physics Letters B</i>, vol. 840, 137871, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.physletb.2023.137871\">10.1016/j.physletb.2023.137871</a>.","ieee":"P. Faccioli, I. Krätschmer, and C. Lourenço, “Low-pT quarkonium polarization measurements: Challenges and opportunities,” <i>Physics Letters B</i>, vol. 840. Elsevier, 2023.","ista":"Faccioli P, Krätschmer I, Lourenço C. 2023. Low-pT quarkonium polarization measurements: Challenges and opportunities. Physics Letters B. 840, 137871.","apa":"Faccioli, P., Krätschmer, I., &#38; Lourenço, C. (2023). Low-pT quarkonium polarization measurements: Challenges and opportunities. <i>Physics Letters B</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.physletb.2023.137871\">https://doi.org/10.1016/j.physletb.2023.137871</a>","ama":"Faccioli P, Krätschmer I, Lourenço C. Low-pT quarkonium polarization measurements: Challenges and opportunities. <i>Physics Letters B</i>. 2023;840. doi:<a href=\"https://doi.org/10.1016/j.physletb.2023.137871\">10.1016/j.physletb.2023.137871</a>"},"article_processing_charge":"Yes (via OA deal)","keyword":["Nuclear and High Energy Physics"],"year":"2023","publication_status":"published","file":[{"date_updated":"2024-01-09T08:59:24Z","file_id":"14762","success":1,"content_type":"application/pdf","access_level":"open_access","file_size":855494,"checksum":"02dec160dbc81d95985e755869d8afbf","file_name":"2023_PhysicsLettersB_Faccioli.pdf","creator":"dernst","relation":"main_file","date_created":"2024-01-09T08:59:24Z"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_number":"137871","date_published":"2023-05-10T00:00:00Z","type":"journal_article","isi":1,"oa":1,"ddc":["530"],"status":"public","month":"05","publication":"Physics Letters B","date_created":"2024-01-08T13:09:17Z","has_accepted_license":"1","abstract":[{"text":"Several fixed-target experiments reported J/ψ and ϒ polarizations, as functions of Feynman x (xF) and transverse momentum (PT), in three different frames, using different combinations of beam particles, target nuclei, and collision energies. Despite the diverse and heterogeneous picture formed by these measurements, a detailed look allows us to discern qualitative physical patterns that inspire a simple empirical model. This data-driven scenario offers a good quantitative description of the J/ψ and ϒ(1S) polarizations measured in proton- and pion-nucleus collisions, in the xF 0.5 domain: more than 80 data points (not statistically independent) are well reproduced with only one free parameter. This study sets the context for future low-PT\r\n quarkonium polarization measurements in proton- and pion-nucleus collisions, such as those to be made by the AMBER experiment, and shows that such measurements provide significant constraints on the poorly-known parton distribution functions of the pion.","lang":"eng"}],"publisher":"Elsevier","language":[{"iso":"eng"}],"intvolume":"       840"},{"title":"Mean structure of the supercritical turbulent spiral in Taylor–Couette flow","date_updated":"2025-09-09T14:14:17Z","author":[{"first_name":"B.","last_name":"Wang","full_name":"Wang, B."},{"last_name":"Mellibovsky","first_name":"F.","full_name":"Mellibovsky, F."},{"orcid":"0000-0001-6572-0621","last_name":"Ayats López","first_name":"Roger","id":"ab77522d-073b-11ed-8aff-e71b39258362","full_name":"Ayats López, Roger"},{"last_name":"Deguchi","first_name":"K.","full_name":"Deguchi, K."},{"full_name":"Meseguer, A.","last_name":"Meseguer","first_name":"A."}],"external_id":{"isi":["000947761800008"],"pmid":["36907214"]},"day":"01","publication_identifier":{"eissn":["1471-2962"],"issn":["1364-503X"]},"file_date_updated":"2024-01-09T09:13:53Z","acknowledgement":"K.D.’s research was supported by Australian Research Council Discovery Early Career Researcher Award (DE170100171). B.W., R.A., F.M. and A.M. research was supported by the Spanish Ministerio de Economía y Competitividad (grant nos. FIS2016-77849-R and FIS2017-85794-P) and Ministerio de Ciencia e Innovación (grant no. PID2020-114043GB-I00) and the Generalitat de Catalunya (grant no. 2017-SGR-785). B.W.’s research was also supported by the Chinese Scholarship Council (grant CSC no. 201806440152). F.M. is a Serra-Húnter Fellow.","article_type":"original","_id":"14754","quality_controlled":"1","oa_version":"Submitted Version","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1098/rsta.2022.0112","citation":{"short":"B. Wang, F. Mellibovsky, R. Ayats López, K. Deguchi, A. Meseguer, Philosophical Transactions of the Royal Society A 381 (2023).","chicago":"Wang, B., F. Mellibovsky, Roger Ayats López, K. Deguchi, and A. Meseguer. “Mean Structure of the Supercritical Turbulent Spiral in Taylor–Couette Flow.” <i>Philosophical Transactions of the Royal Society A</i>. The Royal Society, 2023. <a href=\"https://doi.org/10.1098/rsta.2022.0112\">https://doi.org/10.1098/rsta.2022.0112</a>.","ista":"Wang B, Mellibovsky F, Ayats López R, Deguchi K, Meseguer A. 2023. Mean structure of the supercritical turbulent spiral in Taylor–Couette flow. Philosophical Transactions of the Royal Society A. 381(2246), 0112.","ama":"Wang B, Mellibovsky F, Ayats López R, Deguchi K, Meseguer A. Mean structure of the supercritical turbulent spiral in Taylor–Couette flow. <i>Philosophical Transactions of the Royal Society A</i>. 2023;381(2246). doi:<a href=\"https://doi.org/10.1098/rsta.2022.0112\">10.1098/rsta.2022.0112</a>","apa":"Wang, B., Mellibovsky, F., Ayats López, R., Deguchi, K., &#38; Meseguer, A. (2023). Mean structure of the supercritical turbulent spiral in Taylor–Couette flow. <i>Philosophical Transactions of the Royal Society A</i>. The Royal Society. <a href=\"https://doi.org/10.1098/rsta.2022.0112\">https://doi.org/10.1098/rsta.2022.0112</a>","ieee":"B. Wang, F. Mellibovsky, R. Ayats López, K. Deguchi, and A. Meseguer, “Mean structure of the supercritical turbulent spiral in Taylor–Couette flow,” <i>Philosophical Transactions of the Royal Society A</i>, vol. 381, no. 2246. The Royal Society, 2023.","mla":"Wang, B., et al. “Mean Structure of the Supercritical Turbulent Spiral in Taylor–Couette Flow.” <i>Philosophical Transactions of the Royal Society A</i>, vol. 381, no. 2246, 0112, The Royal Society, 2023, doi:<a href=\"https://doi.org/10.1098/rsta.2022.0112\">10.1098/rsta.2022.0112</a>."},"scopus_import":"1","department":[{"_id":"BjHo"}],"volume":381,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_number":"0112","date_published":"2023-05-01T00:00:00Z","publication_status":"published","year":"2023","keyword":["General Physics and Astronomy","General Engineering","General Mathematics"],"article_processing_charge":"No","file":[{"file_size":6421086,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","date_created":"2024-01-09T09:13:53Z","creator":"dernst","file_name":"2023_PhilTransactionsA_Wang_accepted.pdf","checksum":"1978d126c0ce2f47c22ac20107cc0106","date_updated":"2024-01-09T09:13:53Z","success":1,"file_id":"14763"}],"isi":1,"type":"journal_article","oa":1,"publication":"Philosophical Transactions of the Royal Society A","ddc":["530"],"status":"public","month":"05","issue":"2246","language":[{"iso":"eng"}],"intvolume":"       381","abstract":[{"lang":"eng","text":"The large-scale laminar/turbulent spiral patterns that appear in the linearly unstable regime of counter-rotating Taylor–Couette flow are investigated from a statistical perspective by means of direct numerical simulation. Unlike the vast majority of previous numerical studies, we analyse the flow in periodic parallelogram-annular domains, following a coordinate change that aligns one of the parallelogram sides with the spiral pattern. The domain size, shape and spatial resolution have been varied and the results compared with those in a sufficiently large computational orthogonal domain with natural axial and azimuthal periodicity. We find that a minimal parallelogram of the right tilt significantly reduces the computational cost without notably compromising the statistical properties of the supercritical turbulent spiral. Its mean structure, obtained from extremely long time integrations in a co-rotating reference frame using the method of slices, bears remarkable similarity with the turbulent stripes observed in plane Couette flow, the centrifugal instability playing only a secondary role."}],"pmid":1,"date_created":"2024-01-08T13:11:45Z","has_accepted_license":"1","publisher":"The Royal Society"},{"citation":{"chicago":"Moser, Maximilian. “Convergence of the Scalar- and Vector-Valued Allen–Cahn Equation to Mean Curvature Flow with 90°-Contact Angle in Higher Dimensions, Part I: Convergence Result.” <i>Asymptotic Analysis</i>. IOS Press, 2023. <a href=\"https://doi.org/10.3233/asy-221775\">https://doi.org/10.3233/asy-221775</a>.","short":"M. Moser, Asymptotic Analysis 131 (2023) 297–383.","ieee":"M. Moser, “Convergence of the scalar- and vector-valued Allen–Cahn equation to mean curvature flow with 90°-contact angle in higher dimensions, part I: Convergence result,” <i>Asymptotic Analysis</i>, vol. 131, no. 3–4. IOS Press, pp. 297–383, 2023.","mla":"Moser, Maximilian. “Convergence of the Scalar- and Vector-Valued Allen–Cahn Equation to Mean Curvature Flow with 90°-Contact Angle in Higher Dimensions, Part I: Convergence Result.” <i>Asymptotic Analysis</i>, vol. 131, no. 3–4, IOS Press, 2023, pp. 297–383, doi:<a href=\"https://doi.org/10.3233/asy-221775\">10.3233/asy-221775</a>.","ista":"Moser M. 2023. Convergence of the scalar- and vector-valued Allen–Cahn equation to mean curvature flow with 90°-contact angle in higher dimensions, part I: Convergence result. Asymptotic Analysis. 131(3–4), 297–383.","ama":"Moser M. Convergence of the scalar- and vector-valued Allen–Cahn equation to mean curvature flow with 90°-contact angle in higher dimensions, part I: Convergence result. <i>Asymptotic Analysis</i>. 2023;131(3-4):297-383. doi:<a href=\"https://doi.org/10.3233/asy-221775\">10.3233/asy-221775</a>","apa":"Moser, M. (2023). Convergence of the scalar- and vector-valued Allen–Cahn equation to mean curvature flow with 90°-contact angle in higher dimensions, part I: Convergence result. <i>Asymptotic Analysis</i>. IOS Press. <a href=\"https://doi.org/10.3233/asy-221775\">https://doi.org/10.3233/asy-221775</a>"},"doi":"10.3233/asy-221775","scopus_import":"1","department":[{"_id":"JuFi"}],"volume":131,"_id":"14755","quality_controlled":"1","oa_version":"Preprint","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2105.07100","open_access":"1"}],"external_id":{"isi":["000927801300001"],"arxiv":["2105.07100"]},"day":"02","publication_identifier":{"eissn":["1875-8576"],"issn":["0921-7134"]},"acknowledgement":"The author gratefully acknowledges support through DFG, GRK 1692 “Curvature,\r\nCycles and Cohomology” during parts of the work.","article_type":"original","arxiv":1,"title":"Convergence of the scalar- and vector-valued Allen–Cahn equation to mean curvature flow with 90°-contact angle in higher dimensions, part I: Convergence result","date_updated":"2025-09-09T14:14:55Z","author":[{"id":"a60047a9-da77-11eb-85b4-c4dc385ebb8c","full_name":"Moser, Maximilian","first_name":"Maximilian","last_name":"Moser"}],"language":[{"iso":"eng"}],"intvolume":"       131","abstract":[{"lang":"eng","text":"We consider the sharp interface limit for the scalar-valued and vector-valued Allen–Cahn equation with homogeneous Neumann boundary condition in a bounded smooth domain Ω of arbitrary dimension N ⩾ 2 in the situation when a two-phase diffuse interface has developed and intersects the boundary ∂ Ω. The limit problem is mean curvature flow with 90°-contact angle and we show convergence in strong norms for well-prepared initial data as long as a smooth solution to the limit problem exists. To this end we assume that the limit problem has a smooth solution on [ 0 , T ] for some time T &gt; 0. Based on the latter we construct suitable curvilinear coordinates and set up an asymptotic expansion for the scalar-valued and the vector-valued Allen–Cahn equation. In order to estimate the difference of the exact and approximate solutions with a Gronwall-type argument, a spectral estimate for the linearized Allen–Cahn operator in both cases is required. The latter will be shown in a separate paper, cf. (Moser (2021))."}],"date_created":"2024-01-08T13:13:28Z","publisher":"IOS Press","publication":"Asymptotic Analysis","month":"02","corr_author":"1","status":"public","issue":"3-4","type":"journal_article","isi":1,"oa":1,"page":"297-383","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2023-02-02T00:00:00Z","publication_status":"published","year":"2023","keyword":["General Mathematics"],"article_processing_charge":"No"},{"day":"08","publication_identifier":{"eisbn":["9781119860914"]},"editor":[{"full_name":"Huttner, Wieland","first_name":"Wieland","last_name":"Huttner"}],"page":"169-191","type":"book_chapter","publication_status":"published","year":"2023","article_processing_charge":"No","author":[{"first_name":"Ana","orcid":"0000-0002-5615-5277","last_name":"Villalba Requena","id":"68cb85a0-39f7-11eb-9559-9aaab4f6a247","full_name":"Villalba Requena, Ana"},{"first_name":"Nicole","orcid":"0000-0002-3183-8207","last_name":"Amberg","id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","full_name":"Amberg, Nicole"},{"id":"37B36620-F248-11E8-B48F-1D18A9856A87","full_name":"Hippenmeyer, Simon","orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer","first_name":"Simon"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Interplay of Cell‐autonomous Gene Function and Tissue‐wide Mechanisms Regulating Radial Glial Progenitor Lineage Progression","date_updated":"2024-10-09T21:07:46Z","date_published":"2023-08-08T00:00:00Z","date_created":"2024-01-08T13:16:36Z","department":[{"_id":"SiHi"}],"abstract":[{"text":"The cerebral cortex is comprised of a vast cell-type diversity sequentially generated by cortical progenitor cells. Faithful progenitor lineage progression requires the tight orchestration of distinct molecular and cellular mechanisms regulating proper progenitor proliferation behavior and differentiation. Correct execution of developmental programs involves a complex interplay of cell intrinsic and tissue-wide mechanisms. Many studies over the past decades have been able to determine a plethora of genes critically involved in cortical development. However, only a few made use of genetic paradigms with sparse and global gene deletion to probe cell-autonomous vs. tissue-wide contribution. In this chapter, we will elaborate on the importance of dissecting the cell-autonomous and tissue-wide mechanisms to gain a precise understanding of gene function during radial glial progenitor lineage progression.","lang":"eng"}],"scopus_import":"1","publisher":"Wiley","language":[{"iso":"eng"}],"doi":"10.1002/9781119860914.ch10","citation":{"ieee":"A. Villalba Requena, N. Amberg, and S. Hippenmeyer, “Interplay of Cell‐autonomous Gene Function and Tissue‐wide Mechanisms Regulating Radial Glial Progenitor Lineage Progression,” in <i>Neocortical Neurogenesis in Development and Evolution</i>, W. Huttner, Ed. Wiley, 2023, pp. 169–191.","mla":"Villalba Requena, Ana, et al. “Interplay of Cell‐autonomous Gene Function and Tissue‐wide Mechanisms Regulating Radial Glial Progenitor Lineage Progression.” <i>Neocortical Neurogenesis in Development and Evolution</i>, edited by Wieland Huttner, Wiley, 2023, pp. 169–91, doi:<a href=\"https://doi.org/10.1002/9781119860914.ch10\">10.1002/9781119860914.ch10</a>.","ama":"Villalba Requena A, Amberg N, Hippenmeyer S. Interplay of Cell‐autonomous Gene Function and Tissue‐wide Mechanisms Regulating Radial Glial Progenitor Lineage Progression. In: Huttner W, ed. <i>Neocortical Neurogenesis in Development and Evolution</i>. Wiley; 2023:169-191. doi:<a href=\"https://doi.org/10.1002/9781119860914.ch10\">10.1002/9781119860914.ch10</a>","apa":"Villalba Requena, A., Amberg, N., &#38; Hippenmeyer, S. (2023). Interplay of Cell‐autonomous Gene Function and Tissue‐wide Mechanisms Regulating Radial Glial Progenitor Lineage Progression. In W. Huttner (Ed.), <i>Neocortical Neurogenesis in Development and Evolution</i> (pp. 169–191). Wiley. <a href=\"https://doi.org/10.1002/9781119860914.ch10\">https://doi.org/10.1002/9781119860914.ch10</a>","ista":"Villalba Requena A, Amberg N, Hippenmeyer S. 2023.Interplay of Cell‐autonomous Gene Function and Tissue‐wide Mechanisms Regulating Radial Glial Progenitor Lineage Progression. In: Neocortical Neurogenesis in Development and Evolution. , 169–191.","chicago":"Villalba Requena, Ana, Nicole Amberg, and Simon Hippenmeyer. “Interplay of Cell‐autonomous Gene Function and Tissue‐wide Mechanisms Regulating Radial Glial Progenitor Lineage Progression.” In <i>Neocortical Neurogenesis in Development and Evolution</i>, edited by Wieland Huttner, 169–91. Wiley, 2023. <a href=\"https://doi.org/10.1002/9781119860914.ch10\">https://doi.org/10.1002/9781119860914.ch10</a>.","short":"A. Villalba Requena, N. Amberg, S. Hippenmeyer, in:, W. Huttner (Ed.), Neocortical Neurogenesis in Development and Evolution, Wiley, 2023, pp. 169–191."},"_id":"14757","month":"08","publication":"Neocortical Neurogenesis in Development and Evolution","quality_controlled":"1","oa_version":"None","corr_author":"1","status":"public"},{"_id":"14758","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"ToHe"}],"scopus_import":"1","volume":13966,"project":[{"grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","call_identifier":"H2020"}],"doi":"10.1007/978-3-031-37709-9_1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"ieee":"R. Majumdar, K. Mallik, M. Rychlicki, A.-K. Schmuck, and S. Soudjani, “A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties,” in <i>35th International Conference on Computer Aided Verification</i>, Paris, France, 2023, vol. 13966, pp. 3–15.","mla":"Majumdar, Rupak, et al. “A Flexible Toolchain for Symbolic Rabin Games under Fair and Stochastic Uncertainties.” <i>35th International Conference on Computer Aided Verification</i>, vol. 13966, Springer Nature, 2023, pp. 3–15, doi:<a href=\"https://doi.org/10.1007/978-3-031-37709-9_1\">10.1007/978-3-031-37709-9_1</a>.","ista":"Majumdar R, Mallik K, Rychlicki M, Schmuck A-K, Soudjani S. 2023. A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties. 35th International Conference on Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 13966, 3–15.","apa":"Majumdar, R., Mallik, K., Rychlicki, M., Schmuck, A.-K., &#38; Soudjani, S. (2023). A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties. In <i>35th International Conference on Computer Aided Verification</i> (Vol. 13966, pp. 3–15). Paris, France: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-37709-9_1\">https://doi.org/10.1007/978-3-031-37709-9_1</a>","ama":"Majumdar R, Mallik K, Rychlicki M, Schmuck A-K, Soudjani S. A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties. In: <i>35th International Conference on Computer Aided Verification</i>. Vol 13966. Springer Nature; 2023:3-15. doi:<a href=\"https://doi.org/10.1007/978-3-031-37709-9_1\">10.1007/978-3-031-37709-9_1</a>","chicago":"Majumdar, Rupak, Kaushik Mallik, Mateusz Rychlicki, Anne-Kathrin Schmuck, and Sadegh Soudjani. “A Flexible Toolchain for Symbolic Rabin Games under Fair and Stochastic Uncertainties.” In <i>35th International Conference on Computer Aided Verification</i>, 13966:3–15. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/978-3-031-37709-9_1\">https://doi.org/10.1007/978-3-031-37709-9_1</a>.","short":"R. Majumdar, K. Mallik, M. Rychlicki, A.-K. Schmuck, S. Soudjani, in:, 35th International Conference on Computer Aided Verification, Springer Nature, 2023, pp. 3–15."},"author":[{"last_name":"Majumdar","first_name":"Rupak","full_name":"Majumdar, Rupak"},{"first_name":"Kaushik","last_name":"Mallik","orcid":"0000-0001-9864-7475","full_name":"Mallik, Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598"},{"last_name":"Rychlicki","first_name":"Mateusz","full_name":"Rychlicki, Mateusz"},{"full_name":"Schmuck, Anne-Kathrin","first_name":"Anne-Kathrin","last_name":"Schmuck"},{"full_name":"Soudjani, Sadegh","first_name":"Sadegh","last_name":"Soudjani"}],"date_updated":"2025-09-09T14:16:49Z","title":"A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties","acknowledgement":"Authors ordered alphabetically. R. Majumdar and A.-K. Schmuck are partially supported by DFG project 389792660 TRR 248-CPEC. A.-K. Schmuck is additionally funded through DFG project (SCHM 3541/1-1). K. Mallik is supported by the ERC project ERC-2020-AdG 101020093. M. Rychlicki is supported by the EPSRC project EP/V00252X/1. S. Soudjani is supported by the following projects: EPSRC EP/V043676/1, EIC 101070802, and ERC 101089047.","file_date_updated":"2024-01-09T10:01:07Z","publication_identifier":{"eissn":["1611-3349"],"issn":["0302-9743"],"isbn":["9783031377082"],"eisbn":["9783031377099"]},"related_material":{"record":[{"id":"14994","relation":"research_data","status":"public"}]},"day":"16","conference":{"end_date":"2023-07-22","name":"CAV: Computer Aided Verification","location":"Paris, France","start_date":"2023-07-17"},"external_id":{"isi":["001310805600001"]},"publication":"35th International Conference on Computer Aided Verification","status":"public","corr_author":"1","month":"07","ddc":["000"],"alternative_title":["LNCS"],"abstract":[{"lang":"eng","text":"We present a flexible and efficient toolchain to symbolically solve (standard) Rabin games, fair-adversarial Rabin games, and 2 1/2 license type-player Rabin games. To our best knowledge, our tools are the first ones to be able to solve these problems. Furthermore, using these flexible game solvers as a back-end, we implemented a tool for computing correct-by-construction controllers for stochastic dynamical systems under LTL specifications. Our implementations use the recent theoretical result that all of these games can be solved using the same symbolic fixpoint algorithm but utilizing different, domain specific calculations of the involved predecessor operators. The main feature of our toolchain is the utilization of two programming abstractions: one to separate the symbolic fixpoint computations from the predecessor calculations, and another one to allow the integration of different BDD libraries as back-ends. In particular, we employ a multi-threaded execution of the fixpoint algorithm by using the multi-threaded BDD library Sylvan, which leads to enormous computational savings."}],"has_accepted_license":"1","date_created":"2024-01-08T13:18:00Z","publisher":"Springer Nature","language":[{"iso":"eng"}],"intvolume":"     13966","article_processing_charge":"Yes (in subscription journal)","year":"2023","publication_status":"published","file":[{"date_updated":"2024-01-09T10:01:07Z","success":1,"file_id":"14765","file_size":405147,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","date_created":"2024-01-09T10:01:07Z","creator":"dernst","file_name":"2023_LNCSCAV_Majumdar.pdf","checksum":"1a361d83db0244fd32c03b544c294b5a"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2023-07-16T00:00:00Z","page":"3-15","type":"conference","isi":1,"ec_funded":1,"oa":1},{"month":"12","status":"public","publication":"2023 IEEE 64th Annual Symposium on Foundations of Computer Science","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"In all state-of-the-art sketching and coreset techniques for clustering, as well as in the best known fixed-parameter tractable approximation algorithms, randomness plays a key role. For the classic k-median and k-means problems, there are no known deterministic dimensionality reduction procedure or coreset construction that avoid an exponential dependency on the input dimension d, the precision parameter $\\varepsilon^{-1}$ or k. Furthermore, there is no coreset construction that succeeds with probability $1-1/n$ and whose size does not depend on the number of input points, n. This has led researchers in the area to ask what is the power of randomness for clustering sketches [Feldman WIREs Data Mining Knowl. Discov’20].Similarly, the best approximation ratio achievable deterministically without a complexity exponential in the dimension are $1+\\sqrt{2}$ for k-median [Cohen-Addad, Esfandiari, Mirrokni, Narayanan, STOC’22] and 6.12903 for k-means [Grandoni, Ostrovsky, Rabani, Schulman, Venkat, Inf. Process. Lett.’22]. Those are the best results, even when allowing a complexity FPT in the number of clusters k: this stands in sharp contrast with the $(1+\\varepsilon)$-approximation achievable in that case, when allowing randomization.In this paper, we provide deterministic sketches constructions for clustering, whose size bounds are close to the best-known randomized ones. We show how to compute a dimension reduction onto $\\varepsilon^{-O(1)} \\log k$ dimensions in time $k^{O\\left(\\varepsilon^{-O(1)}+\\log \\log k\\right)}$ poly $(n d)$, and how to build a coreset of size $O\\left(k^{2} \\log ^{3} k \\varepsilon^{-O(1)}\\right)$ in time $2^{\\varepsilon^{O(1)} k \\log ^{3} k}+k^{O\\left(\\varepsilon^{-O(1)}+\\log \\log k\\right)}$ poly $(n d)$. In the case where k is small, this answers an open question of [Feldman WIDM’20] and [Munteanu and Schwiegelshohn, Künstliche Intell. ’18] on whether it is possible to efficiently compute coresets deterministically.We also construct a deterministic algorithm for computing $(1+$ $\\varepsilon)$-approximation to k-median and k-means in high dimensional Euclidean spaces in time $2^{k^{2} \\log ^{3} k / \\varepsilon^{O(1)}}$ poly $(n d)$, close to the best randomized complexity of $2^{(k / \\varepsilon)^{O(1)}}$ nd (see [Kumar, Sabharwal, Sen, JACM 10] and [Bhattacharya, Jaiswal, Kumar, TCS’18]).Furthermore, our new insights on sketches also yield a randomized coreset construction that uses uniform sampling, that immediately improves over the recent results of [Braverman et al. FOCS ’22] by a factor k."}],"date_created":"2024-01-09T16:20:09Z","publisher":"IEEE","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2023-12-22T00:00:00Z","article_processing_charge":"No","year":"2023","publication_status":"published","ec_funded":1,"type":"conference","isi":1,"oa":1,"page":"1105-1130","_id":"14768","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2310.04076","open_access":"1"}],"oa_version":"Preprint","quality_controlled":"1","project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"name":"The design and evaluation of modern fully dynamic data structures","grant_number":"101019564","call_identifier":"H2020","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62"}],"doi":"10.1109/focs57990.2023.00066","citation":{"short":"V. Cohen-Addad, D. Saulpic, C. Schwiegelshohn, in:, 2023 IEEE 64th Annual Symposium on Foundations of Computer Science, IEEE, 2023, pp. 1105–1130.","chicago":"Cohen-Addad, Vincent, David Saulpic, and Chris Schwiegelshohn. “Deterministic Clustering in High Dimensional Spaces: Sketches and Approximation.” In <i>2023 IEEE 64th Annual Symposium on Foundations of Computer Science</i>, 1105–30. IEEE, 2023. <a href=\"https://doi.org/10.1109/focs57990.2023.00066\">https://doi.org/10.1109/focs57990.2023.00066</a>.","apa":"Cohen-Addad, V., Saulpic, D., &#38; Schwiegelshohn, C. (2023). Deterministic clustering in high dimensional spaces: Sketches and approximation. In <i>2023 IEEE 64th Annual Symposium on Foundations of Computer Science</i> (pp. 1105–1130). Santa Cruz, CA, United States: IEEE. <a href=\"https://doi.org/10.1109/focs57990.2023.00066\">https://doi.org/10.1109/focs57990.2023.00066</a>","ista":"Cohen-Addad V, Saulpic D, Schwiegelshohn C. 2023. Deterministic clustering in high dimensional spaces: Sketches and approximation. 2023 IEEE 64th Annual Symposium on Foundations of Computer Science. FOCS: Foundations of Computer Science, 1105–1130.","ama":"Cohen-Addad V, Saulpic D, Schwiegelshohn C. Deterministic clustering in high dimensional spaces: Sketches and approximation. In: <i>2023 IEEE 64th Annual Symposium on Foundations of Computer Science</i>. IEEE; 2023:1105-1130. doi:<a href=\"https://doi.org/10.1109/focs57990.2023.00066\">10.1109/focs57990.2023.00066</a>","mla":"Cohen-Addad, Vincent, et al. “Deterministic Clustering in High Dimensional Spaces: Sketches and Approximation.” <i>2023 IEEE 64th Annual Symposium on Foundations of Computer Science</i>, IEEE, 2023, pp. 1105–30, doi:<a href=\"https://doi.org/10.1109/focs57990.2023.00066\">10.1109/focs57990.2023.00066</a>.","ieee":"V. Cohen-Addad, D. Saulpic, and C. Schwiegelshohn, “Deterministic clustering in high dimensional spaces: Sketches and approximation,” in <i>2023 IEEE 64th Annual Symposium on Foundations of Computer Science</i>, Santa Cruz, CA, United States, 2023, pp. 1105–1130."},"scopus_import":"1","department":[{"_id":"MoHe"}],"date_updated":"2025-09-09T14:17:59Z","title":"Deterministic clustering in high dimensional spaces: Sketches and approximation","author":[{"full_name":"Cohen-Addad, Vincent","first_name":"Vincent","last_name":"Cohen-Addad"},{"last_name":"Saulpic","first_name":"David","id":"f8e48cf0-b0ff-11ed-b0e9-b4c35598f964","full_name":"Saulpic, David"},{"full_name":"Schwiegelshohn, Chris","last_name":"Schwiegelshohn","first_name":"Chris"}],"conference":{"location":"Santa Cruz, CA, United States","name":"FOCS: Foundations of Computer Science","start_date":"2023-11-06","end_date":"2023-11-09"},"external_id":{"arxiv":["2310.04076"],"isi":["001137125900060"]},"acknowledgement":"D. Sauplic has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413, and Grant agreement No. 101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)”.\r\nC. Schwiegelshohn acknowledges the support of the Independent Research Fund Denmark (DFF) under a Sapere Aude Research Leader grant No 1051-00106B.","publication_identifier":{"eisbn":["9798350318944"]},"day":"22","arxiv":1},{"language":[{"iso":"eng"}],"intvolume":"        20","abstract":[{"lang":"eng","text":"We developed LIONESS, a technology that leverages improvements to optical super-resolution microscopy and prior information on sample structure via machine learning to overcome the limitations (in 3D-resolution, signal-to-noise ratio and light exposure) of optical microscopy of living biological specimens. LIONESS enables dense reconstruction of living brain tissue and morphodynamics visualization at the nanoscale."}],"date_created":"2024-01-10T08:07:15Z","publisher":"Springer Nature","month":"08","publication":"Nature Methods","corr_author":"1","status":"public","issue":"8","type":"journal_article","isi":1,"page":"1141-1142","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2023-08-01T00:00:00Z","publication_status":"published","year":"2023","keyword":["Cell Biology","Molecular Biology","Biochemistry","Biotechnology"],"article_processing_charge":"No","doi":"10.1038/s41592-023-01937-5","citation":{"chicago":"Danzl, Johann G, and Philipp Velicky. “LIONESS Enables 4D Nanoscale Reconstruction of Living Brain Tissue.” <i>Nature Methods</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41592-023-01937-5\">https://doi.org/10.1038/s41592-023-01937-5</a>.","short":"J.G. Danzl, P. Velicky, Nature Methods 20 (2023) 1141–1142.","ieee":"J. G. Danzl and P. Velicky, “LIONESS enables 4D nanoscale reconstruction of living brain tissue,” <i>Nature Methods</i>, vol. 20, no. 8. Springer Nature, pp. 1141–1142, 2023.","mla":"Danzl, Johann G., and Philipp Velicky. “LIONESS Enables 4D Nanoscale Reconstruction of Living Brain Tissue.” <i>Nature Methods</i>, vol. 20, no. 8, Springer Nature, 2023, pp. 1141–42, doi:<a href=\"https://doi.org/10.1038/s41592-023-01937-5\">10.1038/s41592-023-01937-5</a>.","apa":"Danzl, J. G., &#38; Velicky, P. (2023). LIONESS enables 4D nanoscale reconstruction of living brain tissue. <i>Nature Methods</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41592-023-01937-5\">https://doi.org/10.1038/s41592-023-01937-5</a>","ista":"Danzl JG, Velicky P. 2023. LIONESS enables 4D nanoscale reconstruction of living brain tissue. Nature Methods. 20(8), 1141–1142.","ama":"Danzl JG, Velicky P. LIONESS enables 4D nanoscale reconstruction of living brain tissue. <i>Nature Methods</i>. 2023;20(8):1141-1142. doi:<a href=\"https://doi.org/10.1038/s41592-023-01937-5\">10.1038/s41592-023-01937-5</a>"},"department":[{"_id":"JoDa"}],"scopus_import":"1","volume":20,"_id":"14770","quality_controlled":"1","oa_version":"None","external_id":{"isi":["001025621500002"]},"day":"01","article_type":"letter_note","publication_identifier":{"eissn":["1548-7105"],"issn":["1548-7091"]},"related_material":{"record":[{"relation":"extended_version","id":"13267","status":"public"}]},"title":"LIONESS enables 4D nanoscale reconstruction of living brain tissue","date_updated":"2026-04-14T08:34:34Z","author":[{"full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973"},{"first_name":"Philipp","last_name":"Velicky","orcid":"0000-0002-2340-7431","full_name":"Velicky, Philipp","id":"39BDC62C-F248-11E8-B48F-1D18A9856A87"}]},{"file":[{"date_updated":"2024-01-10T11:23:57Z","success":1,"file_id":"14789","content_type":"application/pdf","access_level":"open_access","file_size":1120592,"checksum":"eda98ca2aa73da91bd074baed34c2b3c","creator":"dernst","file_name":"2023_JourFunctionalAnalysis_Agresti.pdf","relation":"main_file","date_created":"2024-01-10T11:23:57Z"}],"publication_status":"published","article_processing_charge":"Yes (via OA deal)","keyword":["Analysis"],"year":"2023","article_number":"110146","date_published":"2023-12-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"type":"journal_article","isi":1,"issue":"11","corr_author":"1","status":"public","ddc":["510"],"month":"12","publication":"Journal of Functional Analysis","publisher":"Elsevier","date_created":"2024-01-10T09:15:18Z","has_accepted_license":"1","abstract":[{"lang":"eng","text":"Many coupled evolution equations can be described via 2×2-block operator matrices of the form A=[ \r\nA\tB\r\nC\tD\r\n ] in a product space X=X1×X2 with possibly unbounded entries. Here, the case of diagonally dominant block operator matrices is considered, that is, the case where the full operator A can be seen as a relatively bounded perturbation of its diagonal part with D(A)=D(A)×D(D) though with possibly large relative bound. For such operators the properties of sectoriality, R-sectoriality and the boundedness of the H∞-calculus are studied, and for these properties perturbation results for possibly large but structured perturbations are derived. Thereby, the time dependent parabolic problem associated with A can be analyzed in maximal Lpt\r\n-regularity spaces, and this is applied to a wide range of problems such as different theories for liquid crystals, an artificial Stokes system, strongly damped wave and plate equations, and a Keller-Segel model."}],"intvolume":"       285","language":[{"iso":"eng"}],"author":[{"last_name":"Agresti","orcid":"0000-0002-9573-2962","first_name":"Antonio","full_name":"Agresti, Antonio","id":"673cd0cc-9b9a-11eb-b144-88f30e1fbb72"},{"first_name":"Amru","last_name":"Hussein","full_name":"Hussein, Amru"}],"title":"Maximal Lp-regularity and H∞-calculus for block operator matrices and applications","date_updated":"2024-10-09T21:07:48Z","arxiv":1,"day":"01","file_date_updated":"2024-01-10T11:23:57Z","publication_identifier":{"issn":["0022-1236"]},"acknowledgement":"We would like to thank Tim Binz, Emiel Lorist and Mark Veraar for valuable discussions. We also thank the anonymous referees for their helpful comments and suggestions, and for the very accurate reading of the manuscript.\r\nThe first author has been supported partially by the Nachwuchsring – Network for the promotion of young scientists – at TU Kaiserslautern. Both authors have been supported by MathApp – Mathematics Applied to Real-World Problems - part of the Research Initiative of the Federal State of Rhineland-Palatinate, Germany.","article_type":"original","external_id":{"isi":["001081809000001"],"arxiv":["2108.01962"]},"quality_controlled":"1","oa_version":"Published Version","_id":"14772","volume":285,"scopus_import":"1","department":[{"_id":"JuFi"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"ista":"Agresti A, Hussein A. 2023. Maximal Lp-regularity and H∞-calculus for block operator matrices and applications. Journal of Functional Analysis. 285(11), 110146.","apa":"Agresti, A., &#38; Hussein, A. (2023). Maximal Lp-regularity and H∞-calculus for block operator matrices and applications. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">https://doi.org/10.1016/j.jfa.2023.110146</a>","ama":"Agresti A, Hussein A. Maximal Lp-regularity and H∞-calculus for block operator matrices and applications. <i>Journal of Functional Analysis</i>. 2023;285(11). doi:<a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">10.1016/j.jfa.2023.110146</a>","mla":"Agresti, Antonio, and Amru Hussein. “Maximal Lp-Regularity and H∞-Calculus for Block Operator Matrices and Applications.” <i>Journal of Functional Analysis</i>, vol. 285, no. 11, 110146, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">10.1016/j.jfa.2023.110146</a>.","ieee":"A. Agresti and A. Hussein, “Maximal Lp-regularity and H∞-calculus for block operator matrices and applications,” <i>Journal of Functional Analysis</i>, vol. 285, no. 11. Elsevier, 2023.","short":"A. Agresti, A. Hussein, Journal of Functional Analysis 285 (2023).","chicago":"Agresti, Antonio, and Amru Hussein. “Maximal Lp-Regularity and H∞-Calculus for Block Operator Matrices and Applications.” <i>Journal of Functional Analysis</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">https://doi.org/10.1016/j.jfa.2023.110146</a>."},"doi":"10.1016/j.jfa.2023.110146"},{"external_id":{"isi":["000984516100007"]},"day":"01","article_type":"original","publication_identifier":{"issn":["0031-9228"],"eissn":["1945-0699"]},"title":"The cloud dynamics of convective storm systems","date_updated":"2026-06-18T17:38:37Z","author":[{"first_name":"Caroline J","last_name":"Muller","orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b"},{"full_name":"Abramian, Sophie","last_name":"Abramian","first_name":"Sophie"}],"doi":"10.1063/pt.3.5234","citation":{"mla":"Muller, Caroline J., and Sophie Abramian. “The Cloud Dynamics of Convective Storm Systems.” <i>Physics Today</i>, vol. 76, no. 5, 28, AIP Publishing, 2023, doi:<a href=\"https://doi.org/10.1063/pt.3.5234\">10.1063/pt.3.5234</a>.","ieee":"C. J. Muller and S. Abramian, “The cloud dynamics of convective storm systems,” <i>Physics Today</i>, vol. 76, no. 5. AIP Publishing, 2023.","apa":"Muller, C. J., &#38; Abramian, S. (2023). The cloud dynamics of convective storm systems. <i>Physics Today</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/pt.3.5234\">https://doi.org/10.1063/pt.3.5234</a>","ista":"Muller CJ, Abramian S. 2023. The cloud dynamics of convective storm systems. Physics Today. 76(5), 28.","ama":"Muller CJ, Abramian S. The cloud dynamics of convective storm systems. <i>Physics Today</i>. 2023;76(5). doi:<a href=\"https://doi.org/10.1063/pt.3.5234\">10.1063/pt.3.5234</a>","chicago":"Muller, Caroline J, and Sophie Abramian. “The Cloud Dynamics of Convective Storm Systems.” <i>Physics Today</i>. AIP Publishing, 2023. <a href=\"https://doi.org/10.1063/pt.3.5234\">https://doi.org/10.1063/pt.3.5234</a>.","short":"C.J. Muller, S. Abramian, Physics Today 76 (2023)."},"department":[{"_id":"CaMu"}],"volume":76,"_id":"14773","oa_version":"Published Version","quality_controlled":"1","main_file_link":[{"url":"https://www.lmd.ens.fr/muller/Pubs/2023-MullerAbramianPhysToday.pdf","open_access":"1"}],"type":"journal_article","isi":1,"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"28","date_published":"2023-05-01T00:00:00Z","publication_status":"published","keyword":["General Physics and Astronomy"],"year":"2023","article_processing_charge":"No","language":[{"iso":"eng"}],"intvolume":"        76","abstract":[{"text":"Through a combination of idealized simulations and real-world data, researchers are uncovering how internal feedbacks and large-scale motions influence cloud dynamics.","lang":"eng"}],"date_created":"2024-01-10T09:18:04Z","publisher":"AIP Publishing","status":"public","month":"05","corr_author":"1","ddc":["550"],"publication":"Physics Today","issue":"5"},{"day":"01","article_type":"original","acknowledgement":"K. Schnelli was supported by the Swedish Research Council Grants VR-2017-05195, and the Knut and Alice Wallenberg Foundation. Y. Xu was supported by the Swedish Research Council Grant VR-2017-05195 and the ERC Advanced Grant “RMTBeyond” No. 101020331.","publication_identifier":{"issn":["1050-5164"]},"arxiv":1,"external_id":{"isi":["000946432400021"],"arxiv":["2108.02728"]},"author":[{"id":"434AD0AE-F248-11E8-B48F-1D18A9856A87","full_name":"Schnelli, Kevin","first_name":"Kevin","orcid":"0000-0003-0954-3231","last_name":"Schnelli"},{"full_name":"Xu, Yuanyuan","id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","last_name":"Xu","orcid":"0000-0003-1559-1205","first_name":"Yuanyuan"}],"title":"Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices","date_updated":"2025-04-14T07:57:19Z","department":[{"_id":"LaEr"}],"scopus_import":"1","volume":33,"project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"doi":"10.1214/22-aap1826","citation":{"ieee":"K. Schnelli and Y. Xu, “Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices,” <i>The Annals of Applied Probability</i>, vol. 33, no. 1. Institute of Mathematical Statistics, pp. 677–725, 2023.","mla":"Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom Laws for the Largest Eigenvalue of Sample Covariance Matrices.” <i>The Annals of Applied Probability</i>, vol. 33, no. 1, Institute of Mathematical Statistics, 2023, pp. 677–725, doi:<a href=\"https://doi.org/10.1214/22-aap1826\">10.1214/22-aap1826</a>.","apa":"Schnelli, K., &#38; Xu, Y. (2023). Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices. <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/22-aap1826\">https://doi.org/10.1214/22-aap1826</a>","ista":"Schnelli K, Xu Y. 2023. Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices. The Annals of Applied Probability. 33(1), 677–725.","ama":"Schnelli K, Xu Y. Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices. <i>The Annals of Applied Probability</i>. 2023;33(1):677-725. doi:<a href=\"https://doi.org/10.1214/22-aap1826\">10.1214/22-aap1826</a>","chicago":"Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom Laws for the Largest Eigenvalue of Sample Covariance Matrices.” <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2023. <a href=\"https://doi.org/10.1214/22-aap1826\">https://doi.org/10.1214/22-aap1826</a>.","short":"K. Schnelli, Y. Xu, The Annals of Applied Probability 33 (2023) 677–725."},"_id":"14775","oa_version":"Preprint","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2108.02728"}],"page":"677-725","type":"journal_article","ec_funded":1,"isi":1,"oa":1,"publication_status":"published","year":"2023","article_processing_charge":"No","keyword":["Statistics","Probability and Uncertainty","Statistics and Probability"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2023-02-01T00:00:00Z","date_created":"2024-01-10T09:23:31Z","abstract":[{"text":"We establish a quantitative version of the Tracy–Widom law for the largest eigenvalue of high-dimensional sample covariance matrices. To be precise, we show that the fluctuations of the largest eigenvalue of a sample covariance matrix X∗X converge to its Tracy–Widom limit at a rate nearly N−1/3, where X is an M×N random matrix whose entries are independent real or complex random variables, assuming that both M and N tend to infinity at a constant rate. This result improves the previous estimate N−2/9 obtained by Wang (2019). Our proof relies on a Green function comparison method (Adv. Math. 229 (2012) 1435–1515) using iterative cumulant expansions, the local laws for the Green function and asymptotic properties of the correlation kernel of the white Wishart ensemble.","lang":"eng"}],"publisher":"Institute of Mathematical Statistics","language":[{"iso":"eng"}],"intvolume":"        33","issue":"1","month":"02","corr_author":"1","status":"public","publication":"The Annals of Applied Probability"},{"external_id":{"pmid":["38003717"],"isi":["001113792600001"]},"day":"01","file_date_updated":"2024-01-10T13:39:42Z","article_type":"original","acknowledgement":"We thank C.U.T. Hellen for critically reading the manuscript. The MALDI MS facility and CLSM became available to us in the framework of Moscow State University Development Programs PNG 5.13 and PNR 5.13.\r\nThis work was funded by the Russian Science Foundation, grant numbers 19-14-00010 and 22-14-00071.","publication_identifier":{"issn":["1422-0067"]},"title":"Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3","date_updated":"2024-10-09T21:07:49Z","author":[{"last_name":"Teplova","first_name":"Anastasiia","id":"e3736151-106c-11ec-b916-c2558e2762c6","full_name":"Teplova, Anastasiia"},{"full_name":"Pigidanov, Artemii A.","last_name":"Pigidanov","first_name":"Artemii A."},{"full_name":"Serebryakova, Marina V.","last_name":"Serebryakova","first_name":"Marina V."},{"full_name":"Golyshev, Sergei A.","last_name":"Golyshev","first_name":"Sergei A."},{"first_name":"Raisa A.","last_name":"Galiullina","full_name":"Galiullina, Raisa A."},{"full_name":"Chichkova, Nina V.","first_name":"Nina V.","last_name":"Chichkova"},{"full_name":"Vartapetian, Andrey B.","last_name":"Vartapetian","first_name":"Andrey B."}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"chicago":"Teplova, Anastasiia, Artemii A. Pigidanov, Marina V. Serebryakova, Sergei A. Golyshev, Raisa A. Galiullina, Nina V. Chichkova, and Andrey B. Vartapetian. “Phytaspase Is Capable of Detaching the Endoplasmic Reticulum Retrieval Signal from Tobacco Calreticulin-3.” <i>International Journal of Molecular Sciences</i>. MDPI, 2023. <a href=\"https://doi.org/10.3390/ijms242216527\">https://doi.org/10.3390/ijms242216527</a>.","short":"A. Teplova, A.A. Pigidanov, M.V. Serebryakova, S.A. Golyshev, R.A. Galiullina, N.V. Chichkova, A.B. Vartapetian, International Journal of Molecular Sciences 24 (2023).","mla":"Teplova, Anastasiia, et al. “Phytaspase Is Capable of Detaching the Endoplasmic Reticulum Retrieval Signal from Tobacco Calreticulin-3.” <i>International Journal of Molecular Sciences</i>, vol. 24, no. 22, 16527, MDPI, 2023, doi:<a href=\"https://doi.org/10.3390/ijms242216527\">10.3390/ijms242216527</a>.","ieee":"A. Teplova <i>et al.</i>, “Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3,” <i>International Journal of Molecular Sciences</i>, vol. 24, no. 22. MDPI, 2023.","ista":"Teplova A, Pigidanov AA, Serebryakova MV, Golyshev SA, Galiullina RA, Chichkova NV, Vartapetian AB. 2023. Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3. International Journal of Molecular Sciences. 24(22), 16527.","ama":"Teplova A, Pigidanov AA, Serebryakova MV, et al. Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3. <i>International Journal of Molecular Sciences</i>. 2023;24(22). doi:<a href=\"https://doi.org/10.3390/ijms242216527\">10.3390/ijms242216527</a>","apa":"Teplova, A., Pigidanov, A. A., Serebryakova, M. V., Golyshev, S. A., Galiullina, R. A., Chichkova, N. V., &#38; Vartapetian, A. B. (2023). Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3. <i>International Journal of Molecular Sciences</i>. MDPI. <a href=\"https://doi.org/10.3390/ijms242216527\">https://doi.org/10.3390/ijms242216527</a>"},"doi":"10.3390/ijms242216527","department":[{"_id":"JiFr"}],"volume":24,"_id":"14776","oa_version":"Published Version","quality_controlled":"1","isi":1,"type":"journal_article","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"16527","date_published":"2023-11-01T00:00:00Z","publication_status":"published","keyword":["Inorganic Chemistry","Organic Chemistry","Physical and Theoretical Chemistry","Computer Science Applications","Spectroscopy","Molecular Biology","General Medicine","Catalysis"],"article_processing_charge":"Yes","year":"2023","file":[{"file_name":"2023_IJMS_Teplova.pdf","checksum":"4df7d206ba022b7f54eff1f0aec1659a","creator":"dernst","relation":"main_file","date_created":"2024-01-10T13:39:42Z","content_type":"application/pdf","access_level":"open_access","file_size":2637784,"success":1,"file_id":"14791","date_updated":"2024-01-10T13:39:42Z"}],"language":[{"iso":"eng"}],"intvolume":"        24","abstract":[{"lang":"eng","text":"Soluble chaperones residing in the endoplasmic reticulum (ER) play vitally important roles in folding and quality control of newly synthesized proteins that transiently pass through the ER en route to their final destinations. These soluble residents of the ER are themselves endowed with an ER retrieval signal that enables the cell to bring the escaped residents back from the Golgi. Here, by using purified proteins, we showed that Nicotiana tabacum phytaspase, a plant aspartate-specific protease, introduces two breaks at the C-terminus of the N. tabacum ER resident calreticulin-3. These cleavages resulted in removal of either a dipeptide or a hexapeptide from the C-terminus of calreticulin-3 encompassing part or all of the ER retrieval signal. Consistently, expression of the calreticulin-3 derivative mimicking the phytaspase cleavage product in Nicotiana benthamiana cells demonstrated loss of the ER accumulation of the protein. Notably, upon its escape from the ER, calreticulin-3 was further processed by an unknown protease(s) to generate the free N-terminal (N) domain of calreticulin-3, which was ultimately secreted into the apoplast. Our study thus identified a specific proteolytic enzyme capable of precise detachment of the ER retrieval signal from a plant ER resident protein, with implications for the further fate of the escaped resident."}],"has_accepted_license":"1","date_created":"2024-01-10T09:24:35Z","pmid":1,"publisher":"MDPI","corr_author":"1","ddc":["580"],"month":"11","status":"public","publication":"International Journal of Molecular Sciences","issue":"22"},{"ddc":["540"],"publication":"AIP Advances","corr_author":"1","status":"public","month":"12","issue":"12","intvolume":"        13","language":[{"iso":"eng"}],"publisher":"AIP Publishing","date_created":"2024-01-10T09:26:08Z","abstract":[{"text":"The effects of the partial V-substitution for Ag on the thermoelectric (TE) properties are investigated for a flexible semiconducting compound Ag2S0.55Se0.45. Density functional theory calculations predict that such a partial V-substitution constructively modifies the electronic structure near the bottom of the conduction band to improve the TE performance. The synthesized Ag1.97V0.03S0.55Se0.45 is found to possess a TE dimensionless figure-of-merit (ZT) of 0.71 at 350 K with maintaining its flexible nature. This ZT value is relatively high in comparison with those reported for flexible TE materials below 360 K. The increase in the ZT value is caused by the enhanced absolute value of the Seebeck coefficient with less significant variation in electrical resistivity. The high ZT value with the flexible nature naturally allows us to employ the Ag1.97V0.03S0.55Se0.45 as a component of flexible TE generators.","lang":"eng"}],"has_accepted_license":"1","date_published":"2023-12-01T00:00:00Z","article_number":"125206","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_updated":"2024-01-10T13:47:31Z","file_id":"14792","success":1,"access_level":"open_access","content_type":"application/pdf","file_size":9676071,"creator":"dernst","file_name":"2023_AIPAdvances_Sato.pdf","checksum":"a7098388b8ff822b47f5ddd37ed3bdbc","date_created":"2024-01-10T13:47:31Z","relation":"main_file"}],"year":"2023","keyword":["General Physics and Astronomy"],"article_processing_charge":"Yes","publication_status":"published","oa":1,"isi":1,"type":"journal_article","oa_version":"Published Version","quality_controlled":"1","_id":"14777","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"short":"K. Sato, S. Singh, I. Yamazaki, K. Hirata, A.K.R. Ang, M. Matsunami, T. Takeuchi, AIP Advances 13 (2023).","chicago":"Sato, Kosuke, Saurabh Singh, Itsuki Yamazaki, Keisuke Hirata, Artoni Kevin R. Ang, Masaharu Matsunami, and Tsunehiro Takeuchi. “Improvement of Thermoelectric Performance of Flexible Compound Ag2S0.55Se0.45 by Means of Partial V-Substitution for Ag.” <i>AIP Advances</i>. AIP Publishing, 2023. <a href=\"https://doi.org/10.1063/5.0171888\">https://doi.org/10.1063/5.0171888</a>.","ista":"Sato K, Singh S, Yamazaki I, Hirata K, Ang AKR, Matsunami M, Takeuchi T. 2023. Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag. AIP Advances. 13(12), 125206.","ama":"Sato K, Singh S, Yamazaki I, et al. Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag. <i>AIP Advances</i>. 2023;13(12). doi:<a href=\"https://doi.org/10.1063/5.0171888\">10.1063/5.0171888</a>","apa":"Sato, K., Singh, S., Yamazaki, I., Hirata, K., Ang, A. K. R., Matsunami, M., &#38; Takeuchi, T. (2023). Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag. <i>AIP Advances</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0171888\">https://doi.org/10.1063/5.0171888</a>","ieee":"K. Sato <i>et al.</i>, “Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag,” <i>AIP Advances</i>, vol. 13, no. 12. AIP Publishing, 2023.","mla":"Sato, Kosuke, et al. “Improvement of Thermoelectric Performance of Flexible Compound Ag2S0.55Se0.45 by Means of Partial V-Substitution for Ag.” <i>AIP Advances</i>, vol. 13, no. 12, 125206, AIP Publishing, 2023, doi:<a href=\"https://doi.org/10.1063/5.0171888\">10.1063/5.0171888</a>."},"doi":"10.1063/5.0171888","volume":13,"department":[{"_id":"MaIb"}],"date_updated":"2024-10-09T21:07:49Z","title":"Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag","author":[{"last_name":"Sato","first_name":"Kosuke","full_name":"Sato, Kosuke"},{"first_name":"Saurabh","orcid":"0000-0003-2209-5269","last_name":"Singh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","full_name":"Singh, Saurabh"},{"full_name":"Yamazaki, Itsuki","first_name":"Itsuki","last_name":"Yamazaki"},{"full_name":"Hirata, Keisuke","last_name":"Hirata","first_name":"Keisuke"},{"full_name":"Ang, Artoni Kevin R.","last_name":"Ang","first_name":"Artoni Kevin R."},{"full_name":"Matsunami, Masaharu","last_name":"Matsunami","first_name":"Masaharu"},{"full_name":"Takeuchi, Tsunehiro","last_name":"Takeuchi","first_name":"Tsunehiro"}],"external_id":{"isi":["001114917200005"]},"acknowledgement":"This work received financial support partially from Japan Science and Technology Agency (JST) CREST Grant No. JPMJCR18I2, Japan. The powder-XRD experiments were conducted at BL5S2 of Aichi Synchrotron Radiation Center, Aichi Science & Technology Foundation, Aichi, Japan (Proposal No. 202301057).","article_type":"original","file_date_updated":"2024-01-10T13:47:31Z","publication_identifier":{"eissn":["2158-3226"]},"day":"01"},{"publication_status":"published","keyword":["Theoretical Computer Science","Software"],"article_processing_charge":"Yes","year":"2023","file":[{"success":1,"file_id":"14804","date_updated":"2024-01-16T08:11:24Z","date_created":"2024-01-16T08:11:24Z","relation":"main_file","creator":"dernst","file_name":"2023_FormalAspectsComputing_Chatterjee.pdf","checksum":"3bb133eeb27ec01649a9a36445d952d9","file_size":502522,"access_level":"open_access","content_type":"application/pdf"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2023-06-23T00:00:00Z","article_number":"11","isi":1,"type":"journal_article","ec_funded":1,"oa":1,"issue":"2","corr_author":"1","publication":"Formal Aspects of Computing","ddc":["000"],"status":"public","month":"06","has_accepted_license":"1","date_created":"2024-01-10T09:27:43Z","abstract":[{"text":"We consider the almost-sure (a.s.) termination problem for probabilistic programs, which are a stochastic extension of classical imperative programs. Lexicographic ranking functions provide a sound and practical approach for termination of non-probabilistic programs, and their extension to probabilistic programs is achieved via lexicographic ranking supermartingales (LexRSMs). However, LexRSMs introduced in the previous work have a limitation that impedes their automation: all of their components have to be non-negative in all reachable states. This might result in a LexRSM not existing even for simple terminating programs. Our contributions are twofold. First, we introduce a generalization of LexRSMs that allows for some components to be negative. This standard feature of non-probabilistic termination proofs was hitherto not known to be sound in the probabilistic setting, as the soundness proof requires a careful analysis of the underlying stochastic process. Second, we present polynomial-time algorithms using our generalized LexRSMs for proving a.s. termination in broad classes of linear-arithmetic programs.","lang":"eng"}],"publisher":"Association for Computing Machinery","language":[{"iso":"eng"}],"intvolume":"        35","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu"},{"full_name":"Kafshdar Goharshady, Ehsan","first_name":"Ehsan","last_name":"Kafshdar Goharshady"},{"id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","full_name":"Novotný, Petr","first_name":"Petr","last_name":"Novotný"},{"last_name":"Zárevúcky","first_name":"Jiří","full_name":"Zárevúcky, Jiří"},{"id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde","first_name":"Dorde","orcid":"0000-0002-4681-1699","last_name":"Zikelic"}],"title":"On lexicographic proof rules for probabilistic termination","date_updated":"2025-09-09T14:19:27Z","day":"23","article_type":"original","related_material":{"record":[{"id":"10414","relation":"earlier_version","status":"public"}]},"acknowledgement":"This research was partially supported by the ERC CoG (grant no. 863818; ForM-SMArt), the Czech Science Foundation (grant no. GA21-24711S), and the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 665385.","publication_identifier":{"issn":["0934-5043"],"eissn":["1433-299X"]},"file_date_updated":"2024-01-16T08:11:24Z","arxiv":1,"external_id":{"arxiv":["2108.02188"],"isi":["001035915800006"]},"_id":"14778","oa_version":"Published Version","quality_controlled":"1","department":[{"_id":"KrCh"}],"scopus_import":"1","volume":35,"project":[{"call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818"},{"name":"International IST Doctoral Program","grant_number":"665385","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1145/3585391","citation":{"ista":"Chatterjee K, Kafshdar Goharshady E, Novotný P, Zárevúcky J, Zikelic D. 2023. On lexicographic proof rules for probabilistic termination. Formal Aspects of Computing. 35(2), 11.","ama":"Chatterjee K, Kafshdar Goharshady E, Novotný P, Zárevúcky J, Zikelic D. On lexicographic proof rules for probabilistic termination. <i>Formal Aspects of Computing</i>. 2023;35(2). doi:<a href=\"https://doi.org/10.1145/3585391\">10.1145/3585391</a>","apa":"Chatterjee, K., Kafshdar Goharshady, E., Novotný, P., Zárevúcky, J., &#38; Zikelic, D. (2023). On lexicographic proof rules for probabilistic termination. <i>Formal Aspects of Computing</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3585391\">https://doi.org/10.1145/3585391</a>","mla":"Chatterjee, Krishnendu, et al. “On Lexicographic Proof Rules for Probabilistic Termination.” <i>Formal Aspects of Computing</i>, vol. 35, no. 2, 11, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3585391\">10.1145/3585391</a>.","ieee":"K. Chatterjee, E. Kafshdar Goharshady, P. Novotný, J. Zárevúcky, and D. Zikelic, “On lexicographic proof rules for probabilistic termination,” <i>Formal Aspects of Computing</i>, vol. 35, no. 2. Association for Computing Machinery, 2023.","short":"K. Chatterjee, E. Kafshdar Goharshady, P. Novotný, J. Zárevúcky, D. Zikelic, Formal Aspects of Computing 35 (2023).","chicago":"Chatterjee, Krishnendu, Ehsan Kafshdar Goharshady, Petr Novotný, Jiří Zárevúcky, and Dorde Zikelic. “On Lexicographic Proof Rules for Probabilistic Termination.” <i>Formal Aspects of Computing</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3585391\">https://doi.org/10.1145/3585391</a>."}},{"oa_version":"Published Version","quality_controlled":"1","_id":"14779","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"ama":"Shaw TE, Buri P, McCarthy M, Miles ES, Ayala Á, Pellicciotti F. The decaying near‐surface boundary layer of a retreating alpine glacier. <i>Geophysical Research Letters</i>. 2023;50(11). doi:<a href=\"https://doi.org/10.1029/2023gl103043\">10.1029/2023gl103043</a>","apa":"Shaw, T. E., Buri, P., McCarthy, M., Miles, E. S., Ayala, Á., &#38; Pellicciotti, F. (2023). The decaying near‐surface boundary layer of a retreating alpine glacier. <i>Geophysical Research Letters</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2023gl103043\">https://doi.org/10.1029/2023gl103043</a>","ista":"Shaw TE, Buri P, McCarthy M, Miles ES, Ayala Á, Pellicciotti F. 2023. The decaying near‐surface boundary layer of a retreating alpine glacier. Geophysical Research Letters. 50(11), e2023GL103043.","ieee":"T. E. Shaw, P. Buri, M. McCarthy, E. S. Miles, Á. Ayala, and F. Pellicciotti, “The decaying near‐surface boundary layer of a retreating alpine glacier,” <i>Geophysical Research Letters</i>, vol. 50, no. 11. American Geophysical Union, 2023.","mla":"Shaw, Thomas E., et al. “The Decaying Near‐surface Boundary Layer of a Retreating Alpine Glacier.” <i>Geophysical Research Letters</i>, vol. 50, no. 11, e2023GL103043, American Geophysical Union, 2023, doi:<a href=\"https://doi.org/10.1029/2023gl103043\">10.1029/2023gl103043</a>.","short":"T.E. Shaw, P. Buri, M. McCarthy, E.S. Miles, Á. Ayala, F. Pellicciotti, Geophysical Research Letters 50 (2023).","chicago":"Shaw, Thomas E., Pascal Buri, Michael McCarthy, Evan S. Miles, Álvaro Ayala, and Francesca Pellicciotti. “The Decaying Near‐surface Boundary Layer of a Retreating Alpine Glacier.” <i>Geophysical Research Letters</i>. American Geophysical Union, 2023. <a href=\"https://doi.org/10.1029/2023gl103043\">https://doi.org/10.1029/2023gl103043</a>."},"doi":"10.1029/2023gl103043","volume":50,"scopus_import":"1","department":[{"_id":"FrPe"}],"title":"The decaying near‐surface boundary layer of a retreating alpine glacier","date_updated":"2024-10-21T06:01:34Z","author":[{"first_name":"Thomas E.","last_name":"Shaw","full_name":"Shaw, Thomas E."},{"full_name":"Buri, Pascal","last_name":"Buri","first_name":"Pascal"},{"last_name":"McCarthy","first_name":"Michael","full_name":"McCarthy, Michael"},{"last_name":"Miles","first_name":"Evan S.","full_name":"Miles, Evan S."},{"last_name":"Ayala","first_name":"Álvaro","full_name":"Ayala, Álvaro"},{"last_name":"Pellicciotti","orcid":"0000-0002-5554-8087","first_name":"Francesca","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"external_id":{"isi":["000999436400001"]},"day":"16","publication_identifier":{"issn":["0094-8276"],"eissn":["1944-8007"]},"acknowledgement":"This work was funded by the EU Horizon 2020 Marie Skłodowska-Curie Actions Grant 101026058. The authors acknowl-edge the dedicated collection of field data by many parties since 2001, including those acknowledged for the cited works on Arolla Glacier. The authors would like to thank Fabienne Meier, Alice Zaugg, Raphael Willi, Maria Grundmann, and Marta Corrà for assistance in the field for the summers of 2021 and 2022. Off-glacier data provided by Grand Dixence SA (Arolla) and MeteoSwiss are kindly acknowledged. Simone Fatichi is thanked for the provision and support in the use of the Tethys-Chloris model. We thank Editor Mathieu Morlighem and two anonymous reviewers whose comments have helped to improve the quality of the manuscript.","article_type":"original","file_date_updated":"2024-01-16T08:35:02Z","status":"public","ddc":["550"],"month":"06","publication":"Geophysical Research Letters","issue":"11","intvolume":"        50","language":[{"iso":"eng"}],"publisher":"American Geophysical Union","has_accepted_license":"1","date_created":"2024-01-10T09:28:34Z","abstract":[{"text":"The presence of a developed boundary layer decouples a glacier's response from ambient conditions, suggesting that sensitivity to climate change is increased by glacier retreat. To test this hypothesis, we explore six years of distributed meteorological data on a small Swiss glacier in the period 2001–2022. Large glacier fragmentation has occurred since 2001 (−35% area change up to 2022) coinciding with notable frontal retreat, an observed switch from down‐glacier katabatic to up‐glacier valley winds and an increased sensitivity (ratio) of on‐glacier to off‐glacier temperature. As the glacier ceases to develop density‐driven katabatic winds, sensible heat fluxes on the glacier are increasingly determined by the conditions occurring outside the boundary layer of the glacier, sealing the glacier's demise as the climate continues to warm and experience an increased frequency of extreme summers.","lang":"eng"}],"date_published":"2023-06-16T00:00:00Z","article_number":"e2023GL103043","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"file_size":2529327,"access_level":"open_access","content_type":"application/pdf","date_created":"2024-01-16T08:35:02Z","relation":"main_file","creator":"dernst","file_name":"2023_GeophysicalResearchLetter_Shaw.pdf","checksum":"391a3005c95340a0ae129ce4fbdf2bae","date_updated":"2024-01-16T08:35:02Z","success":1,"file_id":"14805"}],"publication_status":"published","article_processing_charge":"No","year":"2023","keyword":["General Earth and Planetary Sciences","Geophysics"],"oa":1,"isi":1,"type":"journal_article"},{"_id":"14780","quality_controlled":"1","oa_version":"Published Version","project":[{"grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020"}],"citation":{"chicago":"Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices and Principal Components.” <i>Stochastic Processes and Their Applications</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">https://doi.org/10.1016/j.spa.2023.05.009</a>.","short":"X. Ding, H.C. Ji, Stochastic Processes and Their Applications 163 (2023) 25–60.","mla":"Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices and Principal Components.” <i>Stochastic Processes and Their Applications</i>, vol. 163, Elsevier, 2023, pp. 25–60, doi:<a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">10.1016/j.spa.2023.05.009</a>.","ieee":"X. Ding and H. C. Ji, “Spiked multiplicative random matrices and principal components,” <i>Stochastic Processes and their Applications</i>, vol. 163. Elsevier, pp. 25–60, 2023.","apa":"Ding, X., &#38; Ji, H. C. (2023). Spiked multiplicative random matrices and principal components. <i>Stochastic Processes and Their Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">https://doi.org/10.1016/j.spa.2023.05.009</a>","ista":"Ding X, Ji HC. 2023. Spiked multiplicative random matrices and principal components. Stochastic Processes and their Applications. 163, 25–60.","ama":"Ding X, Ji HC. Spiked multiplicative random matrices and principal components. <i>Stochastic Processes and their Applications</i>. 2023;163:25-60. doi:<a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">10.1016/j.spa.2023.05.009</a>"},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.1016/j.spa.2023.05.009","scopus_import":"1","department":[{"_id":"LaEr"}],"volume":163,"date_updated":"2025-07-16T08:01:03Z","title":"Spiked multiplicative random matrices and principal components","author":[{"last_name":"Ding","first_name":"Xiucai","full_name":"Ding, Xiucai"},{"first_name":"Hong Chang","last_name":"Ji","id":"dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d","full_name":"Ji, Hong Chang"}],"external_id":{"isi":["001113615900001"],"arxiv":["2302.13502"]},"publication_identifier":{"eissn":["1879-209X"],"issn":["0304-4149"]},"article_type":"original","acknowledgement":"The authors would like to thank the editor, the associated editor and two anonymous referees for their many critical suggestions which have significantly improved the paper. The authors are also grateful to Zhigang Bao and Ji Oon Lee for many helpful discussions. The first author also wants to thank Hari Bercovici for many useful comments. The first author is partially supported by National Science Foundation DMS-2113489 and the second author is supported by ERC Advanced Grant “RMTBeyond” No. 101020331.","file_date_updated":"2024-01-16T08:47:31Z","day":"01","arxiv":1,"ddc":["510"],"publication":"Stochastic Processes and their Applications","status":"public","month":"09","language":[{"iso":"eng"}],"intvolume":"       163","abstract":[{"text":"In this paper, we study the eigenvalues and eigenvectors of the spiked invariant multiplicative models when the randomness is from Haar matrices. We establish the limits of the outlier eigenvalues λˆi and the generalized components (⟨v,uˆi⟩ for any deterministic vector v) of the outlier eigenvectors uˆi with optimal convergence rates. Moreover, we prove that the non-outlier eigenvalues stick with those of the unspiked matrices and the non-outlier eigenvectors are delocalized. The results also hold near the so-called BBP transition and for degenerate spikes. On one hand, our results can be regarded as a refinement of the counterparts of [12] under additional regularity conditions. On the other hand, they can be viewed as an analog of [34] by replacing the random matrix with i.i.d. entries with Haar random matrix.","lang":"eng"}],"date_created":"2024-01-10T09:29:25Z","has_accepted_license":"1","publisher":"Elsevier","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_published":"2023-09-01T00:00:00Z","article_processing_charge":"Yes (in subscription journal)","keyword":["Applied Mathematics","Modeling and Simulation","Statistics and Probability"],"year":"2023","publication_status":"published","file":[{"file_size":1870349,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","date_created":"2024-01-16T08:47:31Z","file_name":"2023_StochasticProcAppl_Ding.pdf","creator":"dernst","checksum":"46a708b0cd5569a73d0f3d6c3e0a44dc","date_updated":"2024-01-16T08:47:31Z","file_id":"14806","success":1}],"isi":1,"type":"journal_article","ec_funded":1,"oa":1,"page":"25-60"},{"_id":"14782","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"AnSa"}],"volume":122,"tmp":{"image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"citation":{"apa":"Baldauf, L., Frey, F. F., Arribas Perez, M., Idema, T., &#38; Koenderink, G. H. (2023). Branched actin cortices reconstituted in vesicles sense membrane curvature. <i>Biophysical Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">https://doi.org/10.1016/j.bpj.2023.02.018</a>","ama":"Baldauf L, Frey FF, Arribas Perez M, Idema T, Koenderink GH. Branched actin cortices reconstituted in vesicles sense membrane curvature. <i>Biophysical Journal</i>. 2023;122(11):2311-2324. doi:<a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">10.1016/j.bpj.2023.02.018</a>","ista":"Baldauf L, Frey FF, Arribas Perez M, Idema T, Koenderink GH. 2023. Branched actin cortices reconstituted in vesicles sense membrane curvature. Biophysical Journal. 122(11), 2311–2324.","ieee":"L. Baldauf, F. F. Frey, M. Arribas Perez, T. Idema, and G. H. Koenderink, “Branched actin cortices reconstituted in vesicles sense membrane curvature,” <i>Biophysical Journal</i>, vol. 122, no. 11. Elsevier, pp. 2311–2324, 2023.","mla":"Baldauf, Lucia, et al. “Branched Actin Cortices Reconstituted in Vesicles Sense Membrane Curvature.” <i>Biophysical Journal</i>, vol. 122, no. 11, Elsevier, 2023, pp. 2311–24, doi:<a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">10.1016/j.bpj.2023.02.018</a>.","short":"L. Baldauf, F.F. Frey, M. Arribas Perez, T. Idema, G.H. Koenderink, Biophysical Journal 122 (2023) 2311–2324.","chicago":"Baldauf, Lucia, Felix F Frey, Marcos Arribas Perez, Timon Idema, and Gijsje H. Koenderink. “Branched Actin Cortices Reconstituted in Vesicles Sense Membrane Curvature.” <i>Biophysical Journal</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">https://doi.org/10.1016/j.bpj.2023.02.018</a>."},"doi":"10.1016/j.bpj.2023.02.018","author":[{"full_name":"Baldauf, Lucia","first_name":"Lucia","last_name":"Baldauf"},{"id":"a0270b37-8f1a-11ec-95c7-8e710c59a4f3","full_name":"Frey, Felix F","first_name":"Felix F","last_name":"Frey"},{"last_name":"Arribas Perez","first_name":"Marcos","full_name":"Arribas Perez, Marcos"},{"full_name":"Idema, Timon","first_name":"Timon","last_name":"Idema"},{"full_name":"Koenderink, Gijsje H.","first_name":"Gijsje H.","last_name":"Koenderink"}],"date_updated":"2024-01-16T09:20:03Z","title":"Branched actin cortices reconstituted in vesicles sense membrane curvature","article_type":"original","file_date_updated":"2024-01-16T09:09:29Z","acknowledgement":"We thank Jeffrey den Haan for protein purification, Kristina Ganzinger (AMOLF) for providing the 10xHis VCA construct, David Kovar (University of Chicago) for the CP constructs, and Michael Way (Crick Institute) for providing purified human Arp2/3 proteins. We are grateful to Iris Lambert for early actin encapsulation experiments that formed the basis for establishing the eDICE method, to Federico Fanalista for acquiring images of dumbbell-shaped GUVs in samples produced by cDICE, and to Tom Aarts for images of dumbbell-shaped GUVs produced by gel-assisted swelling. Lennard van Buren is thanked for his help with image analysis to quantify actin concentrations in GUVs. We thank Kristina Ganzinger (AMOLF) for hosting us to perform pyrene assays in her lab, and Balász Antalicz (AMOLF) for technical assistance with the spectrophotometer. The authors also thank Matthieu Piel and Daniel Fletcher for insightful and inspiring discussions. We acknowledge financial support from The Netherlands Organization of Scientific Research (NWO/OCW) Gravitation program Building a Synthetic Cell (BaSyC) (024.003.019). F.F. gratefully acknowledges funding from the Kavli Synergy program of the Kavli Institute of Nanoscience Delft.","publication_identifier":{"issn":["0006-3495"]},"related_material":{"link":[{"url":"https://github.com/BioSoftMatterGroup/actin-curvature-sensing","relation":"software"}]},"day":"06","external_id":{"isi":["001016792600001"],"pmid":["36806830"]},"issue":"11","publication":"Biophysical Journal","status":"public","ddc":["570"],"month":"06","pmid":1,"abstract":[{"lang":"eng","text":"The actin cortex is a complex cytoskeletal machinery that drives and responds to changes in cell shape. It must generate or adapt to plasma membrane curvature to facilitate diverse functions such as cell division, migration, and phagocytosis. Due to the complex molecular makeup of the actin cortex, it remains unclear whether actin networks are inherently able to sense and generate membrane curvature, or whether they rely on their diverse binding partners to accomplish this. Here, we show that curvature sensing is an inherent capability of branched actin networks nucleated by Arp2/3 and VCA. We develop a robust method to encapsulate actin inside giant unilamellar vesicles (GUVs) and assemble an actin cortex at the inner surface of the GUV membrane. We show that actin forms a uniform and thin cortical layer when present at high concentration and distinct patches associated with negative membrane curvature at low concentration. Serendipitously, we find that the GUV production method also produces dumbbell-shaped GUVs, which we explain using mathematical modeling in terms of membrane hemifusion of nested GUVs. We find that branched actin networks preferentially assemble at the neck of the dumbbells, which possess a micrometer-range convex curvature comparable with the curvature of the actin patches found in spherical GUVs. Minimal branched actin networks can thus sense membrane curvature, which may help mammalian cells to robustly recruit actin to curved membranes to facilitate diverse cellular functions such as cytokinesis and migration."}],"date_created":"2024-01-10T09:45:48Z","has_accepted_license":"1","publisher":"Elsevier","language":[{"iso":"eng"}],"intvolume":"       122","article_processing_charge":"Yes (in subscription journal)","keyword":["Biophysics"],"year":"2023","publication_status":"published","file":[{"content_type":"application/pdf","access_level":"open_access","file_size":3285810,"checksum":"70566e54cd95ea6df340909ad44c5cd5","creator":"dernst","file_name":"2023_BiophysicalJournal_Baldauf.pdf","relation":"main_file","date_created":"2024-01-16T09:09:29Z","date_updated":"2024-01-16T09:09:29Z","file_id":"14807","success":1}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2023-06-06T00:00:00Z","page":"2311-2324","isi":1,"type":"journal_article","oa":1},{"date_updated":"2024-01-16T09:29:35Z","title":"Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses","author":[{"first_name":"Giselle T","last_name":"Cheung","orcid":"0000-0001-8457-2572","full_name":"Cheung, Giselle T","id":"471195F6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Chever, Oana","last_name":"Chever","first_name":"Oana"},{"last_name":"Rollenhagen","first_name":"Astrid","full_name":"Rollenhagen, Astrid"},{"full_name":"Quenech’du, Nicole","last_name":"Quenech’du","first_name":"Nicole"},{"full_name":"Ezan, Pascal","first_name":"Pascal","last_name":"Ezan"},{"last_name":"Lübke","first_name":"Joachim H. R.","full_name":"Lübke, Joachim H. R."},{"full_name":"Rouach, Nathalie","first_name":"Nathalie","last_name":"Rouach"}],"external_id":{"isi":["000977445700001"],"pmid":["37190042"]},"article_type":"original","acknowledgement":"This research was funded by grants from the European Research Council (Consolidator grant #683154) and European Union’s Horizon 2020 research and innovation program (Marie Sklodowska-Curie Innovative Training Networks, grant #722053, EU-GliaPhD) to N.R., as well as from FP7-PEOPLE Marie Curie Intra-European Fellowship for career development (grant #622289) to G.C. We thank Elena Dossi, Grégory Ghézali, and Jérémie Teillon for support with setting up the MEA system for the two-photon microscope. We would also like to thank Tayfun Palaz for their technical assistance with the EM preparations.","file_date_updated":"2024-01-16T09:26:52Z","publication_identifier":{"issn":["2073-4409"]},"day":"11","_id":"14783","quality_controlled":"1","oa_version":"Published Version","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"short":"G.T. Cheung, O. Chever, A. Rollenhagen, N. Quenech’du, P. Ezan, J.H.R. Lübke, N. Rouach, Cells 12 (2023).","chicago":"Cheung, Giselle T, Oana Chever, Astrid Rollenhagen, Nicole Quenech’du, Pascal Ezan, Joachim H. R. Lübke, and Nathalie Rouach. “Astroglial Connexin 43 Regulates Synaptic Vesicle Release at Hippocampal Synapses.” <i>Cells</i>. MDPI, 2023. <a href=\"https://doi.org/10.3390/cells12081133\">https://doi.org/10.3390/cells12081133</a>.","ista":"Cheung GT, Chever O, Rollenhagen A, Quenech’du N, Ezan P, Lübke JHR, Rouach N. 2023. Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses. Cells. 12(8), 1133.","ama":"Cheung GT, Chever O, Rollenhagen A, et al. Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses. <i>Cells</i>. 2023;12(8). doi:<a href=\"https://doi.org/10.3390/cells12081133\">10.3390/cells12081133</a>","apa":"Cheung, G. T., Chever, O., Rollenhagen, A., Quenech’du, N., Ezan, P., Lübke, J. H. R., &#38; Rouach, N. (2023). Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses. <i>Cells</i>. MDPI. <a href=\"https://doi.org/10.3390/cells12081133\">https://doi.org/10.3390/cells12081133</a>","ieee":"G. T. Cheung <i>et al.</i>, “Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses,” <i>Cells</i>, vol. 12, no. 8. MDPI, 2023.","mla":"Cheung, Giselle T., et al. “Astroglial Connexin 43 Regulates Synaptic Vesicle Release at Hippocampal Synapses.” <i>Cells</i>, vol. 12, no. 8, 1133, MDPI, 2023, doi:<a href=\"https://doi.org/10.3390/cells12081133\">10.3390/cells12081133</a>."},"doi":"10.3390/cells12081133","department":[{"_id":"SiHi"}],"volume":12,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"1133","date_published":"2023-04-11T00:00:00Z","keyword":["General Medicine"],"year":"2023","article_processing_charge":"Yes","publication_status":"published","file":[{"checksum":"6798cd75d8857976fbc58a43fd173d68","file_name":"2023_Cells_Cheung.pdf","creator":"dernst","relation":"main_file","date_created":"2024-01-16T09:26:52Z","content_type":"application/pdf","access_level":"open_access","file_size":7931643,"file_id":"14808","success":1,"date_updated":"2024-01-16T09:26:52Z"}],"isi":1,"type":"journal_article","oa":1,"month":"04","publication":"Cells","ddc":["570"],"status":"public","issue":"8","language":[{"iso":"eng"}],"intvolume":"        12","pmid":1,"date_created":"2024-01-10T09:46:35Z","abstract":[{"lang":"eng","text":"Connexin 43, an astroglial gap junction protein, is enriched in perisynaptic astroglial processes and plays major roles in synaptic transmission. We have previously found that astroglial Cx43 controls synaptic glutamate levels and allows for activity-dependent glutamine release to sustain physiological synaptic transmissions and cognitiogns. However, whether Cx43 is important for the release of synaptic vesicles, which is a critical component of synaptic efficacy, remains unanswered. Here, using transgenic mice with a glial conditional knockout of Cx43 (Cx43−/−), we investigate whether and how astrocytes regulate the release of synaptic vesicles from hippocampal synapses. We report that CA1 pyramidal neurons and their synapses develop normally in the absence of astroglial Cx43. However, a significant impairment in synaptic vesicle distribution and release dynamics were observed. In particular, the FM1-43 assays performed using two-photon live imaging and combined with multi-electrode array stimulation in acute hippocampal slices, revealed a slower rate of synaptic vesicle release in Cx43−/− mice. Furthermore, paired-pulse recordings showed that synaptic vesicle release probability was also reduced and is dependent on glutamine supply via Cx43 hemichannel (HC). Taken together, we have uncovered a role for Cx43 in regulating presynaptic functions by controlling the rate and probability of synaptic vesicle release. Our findings further highlight the significance of astroglial Cx43 in synaptic transmission and efficacy."}],"has_accepted_license":"1","publisher":"MDPI"}]