[{"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","project":[{"call_identifier":"FP7","_id":"25FBA906-B435-11E9-9278-68D0E5697425","name":"Discrete Optimization in Computer Vision: Theory and Practice","grant_number":"616160"}],"publication":"Optimization Methods and Software","isi":1,"ec_funded":1,"article_type":"original","publication_identifier":{"issn":["1055-6788"],"eissn":["1029-4937"]},"year":"2022","acknowledgement":"The authors are grateful to the anonymous referees and the handling Editor for their insightful comments which have improved the earlier version of the manuscript greatly. The second author is grateful to the University of Hafr Al Batin. The last author has received funding from the European Research Council (ERC) under the European Union's Seventh Framework Program (FP7-2007-2013) (Grant agreement No. 616160).","day":"01","doi":"10.1080/10556788.2021.1924715","intvolume":"        37","date_published":"2022-07-01T00:00:00Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","title":"Reflected three-operator splitting method for monotone inclusion problem","author":[{"first_name":"Olaniyi S.","last_name":"Iyiola","full_name":"Iyiola, Olaniyi S."},{"last_name":"Enyi","full_name":"Enyi, Cyril D.","first_name":"Cyril D."},{"orcid":"0000-0001-9224-7139","last_name":"Shehu","full_name":"Shehu, Yekini","id":"3FC7CB58-F248-11E8-B48F-1D18A9856A87","first_name":"Yekini"}],"page":"1527-1565","date_updated":"2024-11-04T13:52:36Z","oa_version":"None","corr_author":"1","publisher":"Taylor and Francis","volume":37,"department":[{"_id":"VlKo"}],"abstract":[{"text":"In this paper, we consider reflected three-operator splitting methods for monotone inclusion problems in real Hilbert spaces. To do this, we first obtain weak convergence analysis and nonasymptotic O(1/n) convergence rate of the reflected Krasnosel'skiĭ-Mann iteration for finding a fixed point of nonexpansive mapping in real Hilbert spaces under some seemingly easy to implement conditions on the iterative parameters. We then apply our results to three-operator splitting for the monotone inclusion problem and consequently obtain the corresponding convergence analysis. Furthermore, we derive reflected primal-dual algorithms for highly structured monotone inclusion problems. Some numerical implementations are drawn from splitting methods to support the theoretical analysis.","lang":"eng"}],"type":"journal_article","citation":{"ista":"Iyiola OS, Enyi CD, Shehu Y. 2022. Reflected three-operator splitting method for monotone inclusion problem. Optimization Methods and Software. 37(4), 1527–1565.","chicago":"Iyiola, Olaniyi S., Cyril D. Enyi, and Yekini Shehu. “Reflected Three-Operator Splitting Method for Monotone Inclusion Problem.” <i>Optimization Methods and Software</i>. Taylor and Francis, 2022. <a href=\"https://doi.org/10.1080/10556788.2021.1924715\">https://doi.org/10.1080/10556788.2021.1924715</a>.","mla":"Iyiola, Olaniyi S., et al. “Reflected Three-Operator Splitting Method for Monotone Inclusion Problem.” <i>Optimization Methods and Software</i>, vol. 37, no. 4, Taylor and Francis, 2022, pp. 1527–65, doi:<a href=\"https://doi.org/10.1080/10556788.2021.1924715\">10.1080/10556788.2021.1924715</a>.","apa":"Iyiola, O. S., Enyi, C. D., &#38; Shehu, Y. (2022). Reflected three-operator splitting method for monotone inclusion problem. <i>Optimization Methods and Software</i>. Taylor and Francis. <a href=\"https://doi.org/10.1080/10556788.2021.1924715\">https://doi.org/10.1080/10556788.2021.1924715</a>","ieee":"O. S. Iyiola, C. D. Enyi, and Y. Shehu, “Reflected three-operator splitting method for monotone inclusion problem,” <i>Optimization Methods and Software</i>, vol. 37, no. 4. Taylor and Francis, pp. 1527–1565, 2022.","ama":"Iyiola OS, Enyi CD, Shehu Y. Reflected three-operator splitting method for monotone inclusion problem. <i>Optimization Methods and Software</i>. 2022;37(4):1527-1565. doi:<a href=\"https://doi.org/10.1080/10556788.2021.1924715\">10.1080/10556788.2021.1924715</a>","short":"O.S. Iyiola, C.D. Enyi, Y. Shehu, Optimization Methods and Software 37 (2022) 1527–1565."},"quality_controlled":"1","month":"07","issue":"4","scopus_import":"1","_id":"9469","external_id":{"isi":["000650507600001"]},"publication_status":"published","date_created":"2021-06-06T22:01:30Z"},{"department":[{"_id":"HeEd"}],"volume":22,"corr_author":"1","publisher":"Springer Nature","quality_controlled":"1","abstract":[{"text":"Isomanifolds are the generalization of isosurfaces to arbitrary dimension and codimension, i.e. manifolds defined as the zero set of some multivariate vector-valued smooth function f : Rd → Rd−n. A natural (and efficient) way to approximate an isomanifold is to consider its Piecewise-Linear (PL) approximation based on a triangulation T of the ambient space Rd. In this paper, we give conditions under which the PL-approximation of an isomanifold is topologically equivalent to the isomanifold. The conditions are easy to satisfy in the sense that they can always be met by taking a sufficiently\r\nfine triangulation T . This contrasts with previous results on the triangulation of manifolds where, in arbitrary dimensions, delicate perturbations are needed to guarantee topological correctness, which leads to strong limitations in practice. We further give a bound on the Fréchet distance between the original isomanifold and its PL-approximation. Finally we show analogous results for the PL-approximation of an isomanifold with boundary.","lang":"eng"}],"type":"journal_article","citation":{"ista":"Boissonnat J-D, Wintraecken M. 2022. The topological correctness of PL approximations of isomanifolds. Foundations of Computational Mathematics . 22, 967–1012.","chicago":"Boissonnat, Jean-Daniel, and Mathijs Wintraecken. “The Topological Correctness of PL Approximations of Isomanifolds.” <i>Foundations of Computational Mathematics </i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s10208-021-09520-0\">https://doi.org/10.1007/s10208-021-09520-0</a>.","mla":"Boissonnat, Jean-Daniel, and Mathijs Wintraecken. “The Topological Correctness of PL Approximations of Isomanifolds.” <i>Foundations of Computational Mathematics </i>, vol. 22, Springer Nature, 2022, pp. 967–1012, doi:<a href=\"https://doi.org/10.1007/s10208-021-09520-0\">10.1007/s10208-021-09520-0</a>.","ama":"Boissonnat J-D, Wintraecken M. The topological correctness of PL approximations of isomanifolds. <i>Foundations of Computational Mathematics </i>. 2022;22:967-1012. doi:<a href=\"https://doi.org/10.1007/s10208-021-09520-0\">10.1007/s10208-021-09520-0</a>","ieee":"J.-D. Boissonnat and M. Wintraecken, “The topological correctness of PL approximations of isomanifolds,” <i>Foundations of Computational Mathematics </i>, vol. 22. Springer Nature, pp. 967–1012, 2022.","apa":"Boissonnat, J.-D., &#38; Wintraecken, M. (2022). The topological correctness of PL approximations of isomanifolds. <i>Foundations of Computational Mathematics </i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10208-021-09520-0\">https://doi.org/10.1007/s10208-021-09520-0</a>","short":"J.-D. Boissonnat, M. Wintraecken, Foundations of Computational Mathematics  22 (2022) 967–1012."},"_id":"9649","scopus_import":"1","month":"01","date_created":"2021-07-14T06:44:53Z","publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000673039600001"]},"publication":"Foundations of Computational Mathematics ","isi":1,"ddc":["516"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","license":"https://creativecommons.org/licenses/by/4.0/","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020"}],"intvolume":"        22","date_published":"2022-01-01T00:00:00Z","doi":"10.1007/s10208-021-09520-0","day":"01","file":[{"file_name":"Boissonnat-Wintraecken2021_Article_TheTopologicalCorrectnessOfPLA.pdf","date_created":"2021-07-14T06:44:36Z","file_size":1455699,"creator":"mwintrae","access_level":"open_access","file_id":"9650","date_updated":"2021-07-14T06:44:36Z","relation":"main_file","checksum":"f1d372ec3c08ec22e84f8e93e1126b8c","content_type":"application/pdf"}],"oa":1,"ec_funded":1,"year":"2022","article_type":"original","publication_identifier":{"eissn":["1615-3383"]},"acknowledgement":"First and foremost, we acknowledge Siargey Kachanovich for discussions. We thank Herbert Edelsbrunner and all members of his group, all former and current members of the Datashape team (formerly known as Geometrica), and André Lieutier for encouragement. We further thank the reviewers of Foundations of Computational Mathematics and the reviewers and program committee of the Symposium on Computational Geometry for their feedback, which improved the exposition.\r\nThis work was funded by the European Research Council under the European Union’s ERC Grant Agreement number 339025 GUDHI (Algorithmic Foundations of Geometric Understanding in Higher Dimensions). This work was also supported by the French government, through the 3IA Côte d’Azur Investments in the Future project managed by the National Research Agency (ANR) with the reference number ANR-19-P3IA-0002. Mathijs Wintraecken also received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 754411.","date_updated":"2025-04-22T13:45:18Z","page":"967-1012","related_material":{"record":[{"status":"public","id":"7952","relation":"earlier_version"}]},"title":"The topological correctness of PL approximations of isomanifolds","author":[{"full_name":"Boissonnat, Jean-Daniel","last_name":"Boissonnat","first_name":"Jean-Daniel"},{"id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","last_name":"Wintraecken","full_name":"Wintraecken, Mathijs","orcid":"0000-0002-7472-2220","first_name":"Mathijs"}],"file_date_updated":"2021-07-14T06:44:36Z","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","language":[{"iso":"eng"}],"status":"public","oa_version":"Published Version"},{"oa_version":"Published Version","status":"public","language":[{"iso":"eng"}],"has_accepted_license":"1","article_processing_charge":"Yes","file_date_updated":"2024-05-29T06:21:33Z","author":[{"first_name":"Aldo","last_name":"Glielmo","full_name":"Glielmo, Aldo"},{"full_name":"Zeni, Claudio","last_name":"Zeni","first_name":"Claudio"},{"first_name":"Bingqing","orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng","full_name":"Cheng, Bingqing"},{"full_name":"Csanyi, Gabor","last_name":"Csanyi","first_name":"Gabor"},{"first_name":"Alessandro","last_name":"Laio","full_name":"Laio, Alessandro"}],"title":"Ranking the information content of distance measures","date_updated":"2025-06-12T06:23:20Z","article_number":"pgac039","publication_identifier":{"eissn":["2752-6542"]},"acknowledgement":"A.G., C.Z., and A.L. gratefully acknowledge support from the European Union’s Horizon 2020 research and innovation program (grant number 824143, MaX ’Materials design at the eXascale’ Centre of Excellence). The authors would like to thank M. Carli, D. Doimo, and I. Macocco (SISSA) for the discussions, M. Caro (Aalto University) for the precious help in using the TurboGap code, and D. Frenkel (University of Cambridge) and N. Bernstein (US Naval Research Laboratory) for useful feedback on the manuscript.\r\nThis work is supported in part by funds from the European Union’s Horizon 2020 research and innovation program (grant number 824143, MaX ’Materials design at the eXascale’ Centre of Excellence).","article_type":"original","year":"2022","file":[{"access_level":"open_access","success":1,"file_name":"2022_PNASNexus_Glielmo.pdf","date_created":"2024-05-29T06:21:33Z","file_size":2005167,"creator":"dernst","relation":"main_file","content_type":"application/pdf","checksum":"f6552854d760eb574ce97abce2c8ef89","file_id":"17080","date_updated":"2024-05-29T06:21:33Z"}],"oa":1,"day":"01","doi":"10.1093/pnasnexus/pgac039","date_published":"2022-05-01T00:00:00Z","intvolume":"         1","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["000"],"publication":"PNAS Nexus","arxiv":1,"external_id":{"arxiv":["2104.15079"],"pmid":["36713323"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"publication_status":"published","date_created":"2021-07-20T06:31:53Z","month":"05","scopus_import":"1","issue":"2","_id":"9695","citation":{"ieee":"A. Glielmo, C. Zeni, B. Cheng, G. Csanyi, and A. Laio, “Ranking the information content of distance measures,” <i>PNAS Nexus</i>, vol. 1, no. 2. Oxford University Press, 2022.","ama":"Glielmo A, Zeni C, Cheng B, Csanyi G, Laio A. Ranking the information content of distance measures. <i>PNAS Nexus</i>. 2022;1(2). doi:<a href=\"https://doi.org/10.1093/pnasnexus/pgac039\">10.1093/pnasnexus/pgac039</a>","apa":"Glielmo, A., Zeni, C., Cheng, B., Csanyi, G., &#38; Laio, A. (2022). Ranking the information content of distance measures. <i>PNAS Nexus</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/pnasnexus/pgac039\">https://doi.org/10.1093/pnasnexus/pgac039</a>","ista":"Glielmo A, Zeni C, Cheng B, Csanyi G, Laio A. 2022. Ranking the information content of distance measures. PNAS Nexus. 1(2), pgac039.","chicago":"Glielmo, Aldo, Claudio Zeni, Bingqing Cheng, Gabor Csanyi, and Alessandro Laio. “Ranking the Information Content of Distance Measures.” <i>PNAS Nexus</i>. Oxford University Press, 2022. <a href=\"https://doi.org/10.1093/pnasnexus/pgac039\">https://doi.org/10.1093/pnasnexus/pgac039</a>.","mla":"Glielmo, Aldo, et al. “Ranking the Information Content of Distance Measures.” <i>PNAS Nexus</i>, vol. 1, no. 2, pgac039, Oxford University Press, 2022, doi:<a href=\"https://doi.org/10.1093/pnasnexus/pgac039\">10.1093/pnasnexus/pgac039</a>.","short":"A. Glielmo, C. Zeni, B. Cheng, G. Csanyi, A. Laio, PNAS Nexus 1 (2022)."},"abstract":[{"text":"Real-world data typically contain a large number of features that are often heterogeneous in nature, relevance, and also units of measure. When assessing the similarity between data points, one can build various distance measures using subsets of these features. Using the fewest features but still retaining sufficient information about the system is crucial in many statistical learning approaches, particularly when data are sparse. We introduce a statistical test that can assess the relative information retained when using two different distance measures, and determine if they are equivalent, independent, or if one is more informative than the other. This in turn allows finding the most informative distance measure out of a pool of candidates. The approach is applied to find the most relevant policy variables for controlling the Covid-19 epidemic and to find compact yet informative representations of atomic structures, but its potential applications are wide ranging in many branches of science.","lang":"eng"}],"pmid":1,"type":"journal_article","quality_controlled":"1","publisher":"Oxford University Press","volume":1,"department":[{"_id":"BiCh"}]},{"volume":23,"department":[{"_id":"SiHi"},{"_id":"CaHe"},{"_id":"EdHa"},{"_id":"EM-Fac"},{"_id":"Bio"},{"_id":"MiSi"}],"corr_author":"1","publisher":"Springer Nature","pmid":1,"type":"journal_article","abstract":[{"lang":"eng","text":"Lymph nodes (LNs) comprise two main structural elements: fibroblastic reticular cells that form dedicated niches for immune cell interaction and capsular fibroblasts that build a shell around the organ. Immunological challenge causes LNs to increase more than tenfold in size within a few days. Here, we characterized the biomechanics of LN swelling on the cellular and organ scale. We identified lymphocyte trapping by influx and proliferation as drivers of an outward pressure force, causing fibroblastic reticular cells of the T-zone (TRCs) and their associated conduits to stretch. After an initial phase of relaxation, TRCs sensed the resulting strain through cell matrix adhesions, which coordinated local growth and remodeling of the stromal network. While the expanded TRC network readopted its typical configuration, a massive fibrotic reaction of the organ capsule set in and countered further organ expansion. Thus, different fibroblast populations mechanically control LN swelling in a multitier fashion."}],"citation":{"ama":"Assen FP, Abe J, Hons M, et al. Multitier mechanics control stromal adaptations in swelling lymph nodes. <i>Nature Immunology</i>. 2022;23:1246-1255. doi:<a href=\"https://doi.org/10.1038/s41590-022-01257-4\">10.1038/s41590-022-01257-4</a>","ieee":"F. P. Assen <i>et al.</i>, “Multitier mechanics control stromal adaptations in swelling lymph nodes,” <i>Nature Immunology</i>, vol. 23. Springer Nature, pp. 1246–1255, 2022.","apa":"Assen, F. P., Abe, J., Hons, M., Hauschild, R., Shamipour, S., Kaufmann, W., … Sixt, M. K. (2022). Multitier mechanics control stromal adaptations in swelling lymph nodes. <i>Nature Immunology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41590-022-01257-4\">https://doi.org/10.1038/s41590-022-01257-4</a>","chicago":"Assen, Frank P, Jun Abe, Miroslav Hons, Robert Hauschild, Shayan Shamipour, Walter Kaufmann, Tommaso Costanzo, et al. “Multitier Mechanics Control Stromal Adaptations in Swelling Lymph Nodes.” <i>Nature Immunology</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41590-022-01257-4\">https://doi.org/10.1038/s41590-022-01257-4</a>.","ista":"Assen FP, Abe J, Hons M, Hauschild R, Shamipour S, Kaufmann W, Costanzo T, Krens G, Brown M, Ludewig B, Hippenmeyer S, Heisenberg C-PJ, Weninger W, Hannezo EB, Luther SA, Stein JV, Sixt MK. 2022. Multitier mechanics control stromal adaptations in swelling lymph nodes. Nature Immunology. 23, 1246–1255.","mla":"Assen, Frank P., et al. “Multitier Mechanics Control Stromal Adaptations in Swelling Lymph Nodes.” <i>Nature Immunology</i>, vol. 23, Springer Nature, 2022, pp. 1246–55, doi:<a href=\"https://doi.org/10.1038/s41590-022-01257-4\">10.1038/s41590-022-01257-4</a>.","short":"F.P. Assen, J. Abe, M. Hons, R. Hauschild, S. Shamipour, W. Kaufmann, T. Costanzo, G. Krens, M. Brown, B. Ludewig, S. Hippenmeyer, C.-P.J. Heisenberg, W. Weninger, E.B. Hannezo, S.A. Luther, J.V. Stein, M.K. Sixt, Nature Immunology 23 (2022) 1246–1255."},"quality_controlled":"1","_id":"9794","month":"07","scopus_import":"1","publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_created":"2021-08-06T09:09:11Z","external_id":{"pmid":["35817845"],"isi":["000822975900002"]},"publication":"Nature Immunology","isi":1,"project":[{"call_identifier":"H2020","name":"Cellular Navigation Along Spatial Gradients","_id":"25FE9508-B435-11E9-9278-68D0E5697425","grant_number":"724373"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"doi":"10.1038/s41590-022-01257-4","day":"11","oa":1,"file":[{"relation":"main_file","checksum":"628e7b49809f22c75b428842efe70c68","content_type":"application/pdf","file_id":"11642","date_updated":"2022-07-25T07:11:32Z","access_level":"open_access","success":1,"date_created":"2022-07-25T07:11:32Z","file_name":"2022_NatureImmunology_Assen.pdf","file_size":11475325,"creator":"dernst"}],"intvolume":"        23","date_published":"2022-07-11T00:00:00Z","acknowledged_ssus":[{"_id":"Bio"},{"_id":"EM-Fac"},{"_id":"PreCl"},{"_id":"LifeSc"}],"ec_funded":1,"acknowledgement":"This research was supported by the Scientific Service Units of IST Austria through resources provided by the Imaging and Optics, Electron Microscopy, Preclinical and Life Science Facilities. We thank C. Moussion for providing anti-PNAd antibody and D. Critchley for Talin1-floxed mice, and E. Papusheva for providing a custom 3D channel alignment script. This work was supported by a European Research Council grant ERC-CoG-72437 to M.S. M.H. was supported by Czech Sciencundation GACR 20-24603Y and Charles University PRIMUS/20/MED/013.","article_type":"original","publication_identifier":{"issn":["1529-2908"],"eissn":["1529-2916"]},"year":"2022","author":[{"first_name":"Frank P","orcid":"0000-0003-3470-6119","id":"3A8E7F24-F248-11E8-B48F-1D18A9856A87","full_name":"Assen, Frank P","last_name":"Assen"},{"first_name":"Jun","last_name":"Abe","full_name":"Abe, Jun"},{"orcid":"0000-0002-6625-3348","last_name":"Hons","full_name":"Hons, Miroslav","id":"4167FE56-F248-11E8-B48F-1D18A9856A87","first_name":"Miroslav"},{"last_name":"Hauschild","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522","first_name":"Robert"},{"full_name":"Shamipour, Shayan","last_name":"Shamipour","id":"40B34FE2-F248-11E8-B48F-1D18A9856A87","first_name":"Shayan"},{"orcid":"0000-0001-9735-5315","id":"3F99E422-F248-11E8-B48F-1D18A9856A87","last_name":"Kaufmann","full_name":"Kaufmann, Walter","first_name":"Walter"},{"orcid":"0000-0001-9732-3815","last_name":"Costanzo","full_name":"Costanzo, Tommaso","id":"D93824F4-D9BA-11E9-BB12-F207E6697425","first_name":"Tommaso"},{"first_name":"Gabriel","orcid":"0000-0003-4761-5996","full_name":"Krens, Gabriel","last_name":"Krens","id":"2B819732-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Markus","full_name":"Brown, Markus","last_name":"Brown","id":"3DAB9AFC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Ludewig","full_name":"Ludewig, Burkhard","first_name":"Burkhard"},{"first_name":"Simon","orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","orcid":"0000-0002-0912-4566"},{"last_name":"Weninger","full_name":"Weninger, Wolfgang","first_name":"Wolfgang"},{"first_name":"Edouard B","last_name":"Hannezo","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561"},{"last_name":"Luther","full_name":"Luther, Sanjiv A.","first_name":"Sanjiv A."},{"last_name":"Stein","full_name":"Stein, Jens V.","first_name":"Jens V."},{"first_name":"Michael K","full_name":"Sixt, Michael K","last_name":"Sixt","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X"}],"title":"Multitier mechanics control stromal adaptations in swelling lymph nodes","date_updated":"2025-06-11T13:52:43Z","page":"1246-1255","status":"public","language":[{"iso":"eng"}],"file_date_updated":"2022-07-25T07:11:32Z","article_processing_charge":"No","has_accepted_license":"1","oa_version":"Published Version"},{"oa_version":"None","title":"Change in the neurochemical signature and morphological development of the parvocellular isthmic projection to the avian tectum","author":[{"first_name":"Rosana","full_name":"Reyes‐Pinto, Rosana","last_name":"Reyes‐Pinto"},{"last_name":"Ferrán","full_name":"Ferrán, José L.","first_name":"José L."},{"full_name":"Vega Zuniga, Tomas A","last_name":"Vega Zuniga","id":"2E7C4E78-F248-11E8-B48F-1D18A9856A87","first_name":"Tomas A"},{"first_name":"Cristian","full_name":"González‐Cabrera, Cristian","last_name":"González‐Cabrera"},{"full_name":"Luksch, Harald","last_name":"Luksch","first_name":"Harald"},{"full_name":"Mpodozis, Jorge","last_name":"Mpodozis","first_name":"Jorge"},{"first_name":"Luis","full_name":"Puelles, Luis","last_name":"Puelles"},{"last_name":"Marín","full_name":"Marín, Gonzalo J.","first_name":"Gonzalo J."}],"page":"553-573","date_updated":"2023-08-11T10:58:17Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","day":"01","doi":"10.1002/cne.25229","date_published":"2022-02-01T00:00:00Z","intvolume":"       530","article_type":"original","year":"2022","acknowledgement":"This work was supported by FONDECYT grants 1151432 and 1210169 to Gonzalo J. Marín. FONDECYT grant 1210069 to Jorge Mpodozis. Spanish Ministry of Science, Innovation and Universities (MCIU), State Research Agency (AEI) and European Regional Development Fund (FEDER), PGC2018-098229-B-100 to José L Ferrán. Spanish Ministry of Economy and Competitiveness Excellency Grant BFU2014-57516P (with European Community FEDER support), and a Seneca Foundation (Autonomous Community of Murcia) Excellency Research contract, ref: 19904/ GERM/15; project name: Genoarchitectonic Brain Development and Applications to Neurodegenerative Diseases and Cancer (5672 Fundación Séneca) to Luis Puelles. The authors gratefully acknowledge the valuable editorial help provided by Sara Fernández-Collemann. The authors also thank Elisa Sentis and Solano Henríquez for expert technical help.","publication_identifier":{"eissn":["1096-9861"],"issn":["0021-9967"]},"isi":1,"publication":"Journal of Comparative Neurology","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","date_created":"2021-08-23T08:40:59Z","external_id":{"pmid":["34363623"],"isi":["000686420000001"]},"_id":"9955","month":"02","issue":"2","scopus_import":"1","citation":{"short":"R. Reyes‐Pinto, J.L. Ferrán, T.A. Vega Zuniga, C. González‐Cabrera, H. Luksch, J. Mpodozis, L. Puelles, G.J. Marín, Journal of Comparative Neurology 530 (2022) 553–573.","apa":"Reyes‐Pinto, R., Ferrán, J. L., Vega Zuniga, T. A., González‐Cabrera, C., Luksch, H., Mpodozis, J., … Marín, G. J. (2022). Change in the neurochemical signature and morphological development of the parvocellular isthmic projection to the avian tectum. <i>Journal of Comparative Neurology</i>. Wiley. <a href=\"https://doi.org/10.1002/cne.25229\">https://doi.org/10.1002/cne.25229</a>","ieee":"R. Reyes‐Pinto <i>et al.</i>, “Change in the neurochemical signature and morphological development of the parvocellular isthmic projection to the avian tectum,” <i>Journal of Comparative Neurology</i>, vol. 530, no. 2. Wiley, pp. 553–573, 2022.","ama":"Reyes‐Pinto R, Ferrán JL, Vega Zuniga TA, et al. Change in the neurochemical signature and morphological development of the parvocellular isthmic projection to the avian tectum. <i>Journal of Comparative Neurology</i>. 2022;530(2):553-573. doi:<a href=\"https://doi.org/10.1002/cne.25229\">10.1002/cne.25229</a>","mla":"Reyes‐Pinto, Rosana, et al. “Change in the Neurochemical Signature and Morphological Development of the Parvocellular Isthmic Projection to the Avian Tectum.” <i>Journal of Comparative Neurology</i>, vol. 530, no. 2, Wiley, 2022, pp. 553–73, doi:<a href=\"https://doi.org/10.1002/cne.25229\">10.1002/cne.25229</a>.","chicago":"Reyes‐Pinto, Rosana, José L. Ferrán, Tomas A Vega Zuniga, Cristian González‐Cabrera, Harald Luksch, Jorge Mpodozis, Luis Puelles, and Gonzalo J. Marín. “Change in the Neurochemical Signature and Morphological Development of the Parvocellular Isthmic Projection to the Avian Tectum.” <i>Journal of Comparative Neurology</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/cne.25229\">https://doi.org/10.1002/cne.25229</a>.","ista":"Reyes‐Pinto R, Ferrán JL, Vega Zuniga TA, González‐Cabrera C, Luksch H, Mpodozis J, Puelles L, Marín GJ. 2022. Change in the neurochemical signature and morphological development of the parvocellular isthmic projection to the avian tectum. Journal of Comparative Neurology. 530(2), 553–573."},"abstract":[{"lang":"eng","text":"Neurons can change their classical neurotransmitters during ontogeny, sometimes going through stages of dual release. Here, we explored the development of the neurotransmitter identity of neurons of the avian nucleus isthmi parvocellularis (Ipc), whose axon terminals are retinotopically arranged in the optic tectum (TeO) and exert a focal gating effect upon the ascending transmission of retinal inputs. Although cholinergic and glutamatergic markers are both found in Ipc neurons and terminals of adult pigeons and chicks, the mRNA expression of the vesicular acetylcholine transporter, VAChT, is weak or absent. To explore how the Ipc neurotransmitter identity is established during ontogeny, we analyzed the expression of mRNAs coding for cholinergic (ChAT, VAChT, and CHT) and glutamatergic (VGluT2 and VGluT3) markers in chick embryos at different developmental stages. We found that between E12 and E18, Ipc neurons expressed all cholinergic mRNAs and also VGluT2 mRNA; however, from E16 through posthatch stages, VAChT mRNA expression was specifically diminished. Our ex vivo deposits of tracer crystals and intracellular filling experiments revealed that Ipc axons exhibit a mature paintbrush morphology late in development, experiencing marked morphological transformations during the period of presumptive dual vesicular transmitter release. Additionally, although ChAT protein immunoassays increasingly label the growing Ipc axon, this labeling was consistently restricted to sparse portions of the terminal branches. Combined, these results suggest that the synthesis of glutamate and acetylcholine, and their vesicular release, is complexly linked to the developmental processes of branching, growing and remodeling of these unique axons."}],"pmid":1,"type":"journal_article","quality_controlled":"1","volume":530,"department":[{"_id":"MaJö"}],"publisher":"Wiley"},{"date_updated":"2025-04-14T07:43:49Z","page":"709-764","title":"Resurgence analysis of quantum invariants of Seifert fibered homology spheres","author":[{"last_name":"Mistegaard","full_name":"Mistegaard, William","id":"41B03CD0-62AE-11E9-84EF-0718E6697425","first_name":"William"},{"first_name":"Jørgen Ellegaard","full_name":"Andersen, Jørgen Ellegaard","last_name":"Andersen"}],"file_date_updated":"2022-03-24T11:42:25Z","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","status":"public","language":[{"iso":"eng"}],"oa_version":"Published Version","arxiv":1,"publication":"Journal of the London Mathematical Society","isi":1,"ddc":["510"],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"intvolume":"       105","date_published":"2022-03-01T00:00:00Z","doi":"10.1112/jlms.12506","day":"01","oa":1,"file":[{"access_level":"open_access","date_created":"2022-03-24T11:42:25Z","file_name":"2022_JourLondonMathSoc_Andersen.pdf","success":1,"file_size":649130,"creator":"dernst","relation":"main_file","content_type":"application/pdf","checksum":"9c72327d39f34f1a6eaa98fa4b8493f2","file_id":"10917","date_updated":"2022-03-24T11:42:25Z"}],"ec_funded":1,"article_type":"original","publication_identifier":{"eissn":["1469-7750"]},"year":"2022","acknowledgement":"We warmly thank S. Gukov for valuable discussions on the GPPV invariant ̂Z𝑎(𝑀3; 𝑞). The first\r\nauthor was supported in part by the center of excellence grant ‘Center for Quantum Geometry\r\nof Moduli Spaces’ from the Danish National Research Foundation (DNRF95) and by the ERCSynergy\r\ngrant ‘ReNewQuantum’. The second author received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement no. 754411.","_id":"9977","issue":"2","scopus_import":"1","month":"03","date_created":"2021-08-31T12:51:40Z","publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000755205700001"],"arxiv":["1811.05376"]},"department":[{"_id":"TaHa"}],"volume":105,"corr_author":"1","publisher":"Wiley","quality_controlled":"1","type":"journal_article","abstract":[{"text":"For a Seifert fibered homology sphere X we show that the q-series invariant Zˆ0(X; q) introduced by Gukov-Pei-Putrov-Vafa, is a resummation of the Ohtsuki series Z0(X). We show that for every even k ∈ N there exists a full asymptotic expansion of Zˆ0(X; q) for q tending to e 2πi/k, and in particular that the limit Zˆ0(X; e 2πi/k) exists and is equal to the\r\nWRT quantum invariant τk(X). We show that the poles of the Borel transform of Z0(X) coincide with the classical complex Chern-Simons values, which we further show classifies the corresponding components of the moduli space of flat SL(2, C)-connections.","lang":"eng"}],"citation":{"chicago":"Mistegaard, William, and Jørgen Ellegaard Andersen. “Resurgence Analysis of Quantum Invariants of Seifert Fibered Homology Spheres.” <i>Journal of the London Mathematical Society</i>. Wiley, 2022. <a href=\"https://doi.org/10.1112/jlms.12506\">https://doi.org/10.1112/jlms.12506</a>.","ista":"Mistegaard W, Andersen JE. 2022. Resurgence analysis of quantum invariants of Seifert fibered homology spheres. Journal of the London Mathematical Society. 105(2), 709–764.","mla":"Mistegaard, William, and Jørgen Ellegaard Andersen. “Resurgence Analysis of Quantum Invariants of Seifert Fibered Homology Spheres.” <i>Journal of the London Mathematical Society</i>, vol. 105, no. 2, Wiley, 2022, pp. 709–64, doi:<a href=\"https://doi.org/10.1112/jlms.12506\">10.1112/jlms.12506</a>.","ama":"Mistegaard W, Andersen JE. Resurgence analysis of quantum invariants of Seifert fibered homology spheres. <i>Journal of the London Mathematical Society</i>. 2022;105(2):709-764. doi:<a href=\"https://doi.org/10.1112/jlms.12506\">10.1112/jlms.12506</a>","apa":"Mistegaard, W., &#38; Andersen, J. E. (2022). Resurgence analysis of quantum invariants of Seifert fibered homology spheres. <i>Journal of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/jlms.12506\">https://doi.org/10.1112/jlms.12506</a>","ieee":"W. Mistegaard and J. E. Andersen, “Resurgence analysis of quantum invariants of Seifert fibered homology spheres,” <i>Journal of the London Mathematical Society</i>, vol. 105, no. 2. Wiley, pp. 709–764, 2022.","short":"W. Mistegaard, J.E. Andersen, Journal of the London Mathematical Society 105 (2022) 709–764."}},{"oa_version":"Published Version","author":[{"first_name":"Giselle T","orcid":"0000-0001-8457-2572","full_name":"Cheung, Giselle T","last_name":"Cheung","id":"471195F6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Bataveljic","full_name":"Bataveljic, Danijela","first_name":"Danijela"},{"full_name":"Visser, Josien","last_name":"Visser","first_name":"Josien"},{"first_name":"Naresh","last_name":"Kumar","full_name":"Kumar, Naresh"},{"last_name":"Moulard","full_name":"Moulard, Julien","first_name":"Julien"},{"first_name":"Glenn","full_name":"Dallérac, Glenn","last_name":"Dallérac"},{"first_name":"Daria","last_name":"Mozheiko","full_name":"Mozheiko, Daria"},{"first_name":"Astrid","last_name":"Rollenhagen","full_name":"Rollenhagen, Astrid"},{"first_name":"Pascal","full_name":"Ezan, Pascal","last_name":"Ezan"},{"last_name":"Mongin","full_name":"Mongin, Cédric","first_name":"Cédric"},{"first_name":"Oana","last_name":"Chever","full_name":"Chever, Oana"},{"first_name":"Alexis Pierre","last_name":"Bemelmans","full_name":"Bemelmans, Alexis Pierre"},{"last_name":"Lübke","full_name":"Lübke, Joachim","first_name":"Joachim"},{"full_name":"Leray, Isabelle","last_name":"Leray","first_name":"Isabelle"},{"last_name":"Rouach","full_name":"Rouach, Nathalie","first_name":"Nathalie"}],"title":"Physiological synaptic activity and recognition memory require astroglial glutamine","date_updated":"2026-04-02T12:22:38Z","language":[{"iso":"eng"}],"status":"public","has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2022-02-21T07:51:33Z","oa":1,"file":[{"access_level":"open_access","creator":"dernst","file_size":7910519,"file_name":"2022_NatureCommunications_Cheung.pdf","date_created":"2022-02-21T07:51:33Z","success":1,"content_type":"application/pdf","checksum":"51d580aff2327dd957946208a9749e1a","relation":"main_file","date_updated":"2022-02-21T07:51:33Z","file_id":"10777"}],"day":"08","doi":"10.1038/s41467-022-28331-7","date_published":"2022-02-08T00:00:00Z","intvolume":"        13","article_number":"753","acknowledgement":"We thank D. Mazaud and. J. Cazères for technical assistance. This work was supported by grants from the European Research Council (Consolidator grant #683154) and European Union’s Horizon 2020 research and innovation program (Marie Sklodowska-Curie Innovative Training Networks, grant #722053, EU-GliaPhD) to N.R. and from FP7-PEOPLE Marie Curie Intra-European Fellowship for career development (grant #622289) to G.C.","publication_identifier":{"eissn":["2041-1723"]},"article_type":"original","year":"2022","isi":1,"publication":"Nature Communications","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["570"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","date_created":"2022-02-20T23:01:30Z","external_id":{"isi":["000757297200017"],"pmid":["35136061"]},"_id":"10764","month":"02","scopus_import":"1","citation":{"short":"G.T. Cheung, D. Bataveljic, J. Visser, N. Kumar, J. Moulard, G. Dallérac, D. Mozheiko, A. Rollenhagen, P. Ezan, C. Mongin, O. Chever, A.P. Bemelmans, J. Lübke, I. Leray, N. Rouach, Nature Communications 13 (2022).","apa":"Cheung, G. T., Bataveljic, D., Visser, J., Kumar, N., Moulard, J., Dallérac, G., … Rouach, N. (2022). Physiological synaptic activity and recognition memory require astroglial glutamine. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-28331-7\">https://doi.org/10.1038/s41467-022-28331-7</a>","ama":"Cheung GT, Bataveljic D, Visser J, et al. Physiological synaptic activity and recognition memory require astroglial glutamine. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-28331-7\">10.1038/s41467-022-28331-7</a>","ieee":"G. T. Cheung <i>et al.</i>, “Physiological synaptic activity and recognition memory require astroglial glutamine,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.","mla":"Cheung, Giselle T., et al. “Physiological Synaptic Activity and Recognition Memory Require Astroglial Glutamine.” <i>Nature Communications</i>, vol. 13, 753, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-28331-7\">10.1038/s41467-022-28331-7</a>.","chicago":"Cheung, Giselle T, Danijela Bataveljic, Josien Visser, Naresh Kumar, Julien Moulard, Glenn Dallérac, Daria Mozheiko, et al. “Physiological Synaptic Activity and Recognition Memory Require Astroglial Glutamine.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-28331-7\">https://doi.org/10.1038/s41467-022-28331-7</a>.","ista":"Cheung GT, Bataveljic D, Visser J, Kumar N, Moulard J, Dallérac G, Mozheiko D, Rollenhagen A, Ezan P, Mongin C, Chever O, Bemelmans AP, Lübke J, Leray I, Rouach N. 2022. Physiological synaptic activity and recognition memory require astroglial glutamine. Nature Communications. 13, 753."},"abstract":[{"text":"Presynaptic glutamate replenishment is fundamental to brain function. In high activity regimes, such as epileptic episodes, this process is thought to rely on the glutamate-glutamine cycle between neurons and astrocytes. However the presence of an astroglial glutamine supply, as well as its functional relevance in vivo in the healthy brain remain controversial, partly due to a lack of tools that can directly examine glutamine transfer. Here, we generated a fluorescent probe that tracks glutamine in live cells, which provides direct visual evidence of an activity-dependent glutamine supply from astroglial networks to presynaptic structures under physiological conditions. This mobilization is mediated by connexin43, an astroglial protein with both gap-junction and hemichannel functions, and is essential for synaptic transmission and object recognition memory. Our findings uncover an indispensable recruitment of astroglial glutamine in physiological synaptic activity and memory via an unconventional pathway, thus providing an astrocyte basis for cognitive processes.","lang":"eng"}],"type":"journal_article","pmid":1,"quality_controlled":"1","volume":13,"department":[{"_id":"SiHi"}],"publisher":"Springer Nature"},{"date_updated":"2026-04-02T12:14:43Z","author":[{"first_name":"Beatriz","full_name":"Herguedas, Beatriz","last_name":"Herguedas"},{"first_name":"Bianka K.","last_name":"Kohegyi","full_name":"Kohegyi, Bianka K."},{"first_name":"Jan Niklas","last_name":"Dohrke","full_name":"Dohrke, Jan Niklas"},{"last_name":"Watson","full_name":"Watson, Jake","id":"63836096-4690-11EA-BD4E-32803DDC885E","orcid":"0000-0002-8698-3823","first_name":"Jake"},{"first_name":"Danyang","full_name":"Zhang, Danyang","last_name":"Zhang"},{"full_name":"Ho, Hinze","last_name":"Ho","first_name":"Hinze"},{"first_name":"Saher A.","full_name":"Shaikh, Saher A.","last_name":"Shaikh"},{"last_name":"Lape","full_name":"Lape, Remigijus","first_name":"Remigijus"},{"first_name":"James M.","full_name":"Krieger, James M.","last_name":"Krieger"},{"first_name":"Ingo H.","last_name":"Greger","full_name":"Greger, Ingo H."}],"title":"Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor","file_date_updated":"2022-02-21T07:59:32Z","has_accepted_license":"1","article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","oa_version":"Published Version","publication":"Nature Communications","isi":1,"ddc":["570"],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","intvolume":"        13","date_published":"2022-02-08T00:00:00Z","doi":"10.1038/s41467-022-28404-7","day":"08","oa":1,"file":[{"access_level":"open_access","creator":"dernst","file_size":2625540,"success":1,"date_created":"2022-02-21T07:59:32Z","file_name":"2022_NatureCommunications_Herguedas.pdf","checksum":"d86ee8eabe8b794730729ffbb1a8832e","content_type":"application/pdf","relation":"main_file","date_updated":"2022-02-21T07:59:32Z","file_id":"10778"}],"acknowledgement":"We thank Ondrej Cais for critical reading of the manuscript. We are grateful to LMB\r\nscientific computing and the EM facility for support, Paul Emsley for help with model\r\nbuilding and Takanori Nakane for helpful comments with Relion 3.1. This work was\r\nsupported by grants from the Medical Research Council (MC_U105174197) and BBSRC\r\n(BB/N002113/1) to I.H.G, and grants from the MCIN/AEI/ 10.13039/501100011033 and\r\n“ESF Investing in your future” to B.H (PID2019-106284GA-I00 and RYC2018-025720-I).","year":"2022","article_type":"original","publication_identifier":{"eissn":["2041-1723"]},"article_number":"734","_id":"10763","scopus_import":"1","month":"02","date_created":"2022-02-20T23:01:30Z","publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["35136046"],"isi":["000757297200008"]},"department":[{"_id":"PeJo"}],"volume":13,"publisher":"Springer Nature","quality_controlled":"1","type":"journal_article","pmid":1,"abstract":[{"lang":"eng","text":"AMPA-type glutamate receptors (AMPARs) mediate rapid signal transmission at excitatory\r\nsynapses in the brain. Glutamate binding to the receptor’s ligand-binding domains (LBDs)\r\nleads to ion channel activation and desensitization. Gating kinetics shape synaptic transmission\r\nand are strongly modulated by transmembrane AMPAR regulatory proteins (TARPs)\r\nthrough currently incompletely resolved mechanisms. Here, electron cryo-microscopy\r\nstructures of the GluA1/2 TARP-γ8 complex, in both open and desensitized states\r\n(at 3.5 Å), reveal state-selective engagement of the LBDs by the large TARP-γ8 loop (‘β1’),\r\nelucidating how this TARP stabilizes specific gating states. We further show how TARPs alter\r\nchannel rectification, by interacting with the pore helix of the selectivity filter. Lastly, we\r\nreveal that the Q/R-editing site couples the channel constriction at the filter entrance to the\r\ngate, and forms the major cation binding site in the conduction path. Our results provide a\r\nmechanistic framework of how TARPs modulate AMPAR gating and conductance."}],"citation":{"mla":"Herguedas, Beatriz, et al. “Mechanisms Underlying TARP Modulation of the GluA1/2-Γ8 AMPA Receptor.” <i>Nature Communications</i>, vol. 13, 734, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-28404-7\">10.1038/s41467-022-28404-7</a>.","ista":"Herguedas B, Kohegyi BK, Dohrke JN, Watson J, Zhang D, Ho H, Shaikh SA, Lape R, Krieger JM, Greger IH. 2022. Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor. Nature Communications. 13, 734.","chicago":"Herguedas, Beatriz, Bianka K. Kohegyi, Jan Niklas Dohrke, Jake Watson, Danyang Zhang, Hinze Ho, Saher A. Shaikh, Remigijus Lape, James M. Krieger, and Ingo H. Greger. “Mechanisms Underlying TARP Modulation of the GluA1/2-Γ8 AMPA Receptor.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-28404-7\">https://doi.org/10.1038/s41467-022-28404-7</a>.","apa":"Herguedas, B., Kohegyi, B. K., Dohrke, J. N., Watson, J., Zhang, D., Ho, H., … Greger, I. H. (2022). Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-28404-7\">https://doi.org/10.1038/s41467-022-28404-7</a>","ieee":"B. Herguedas <i>et al.</i>, “Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.","ama":"Herguedas B, Kohegyi BK, Dohrke JN, et al. Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-28404-7\">10.1038/s41467-022-28404-7</a>","short":"B. Herguedas, B.K. Kohegyi, J.N. Dohrke, J. Watson, D. Zhang, H. Ho, S.A. Shaikh, R. Lape, J.M. Krieger, I.H. Greger, Nature Communications 13 (2022)."}},{"department":[{"_id":"MaSe"}],"OA_type":"gold","volume":32,"publisher":"Asociación Física Argentina","quality_controlled":"1","citation":{"apa":"Daguerre, L., Torroba, G., Medina Ramos, R. A., &#38; Solís, M. (2022). Non relativistic quantum field theory: Dynamics and irreversibility. <i>Anales de la Asociacion Fisica Argentina</i>. Asociación Física Argentina. <a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">https://doi.org/10.31527/analesafa.2021.32.4.93</a>","ieee":"L. Daguerre, G. Torroba, R. A. Medina Ramos, and M. Solís, “Non relativistic quantum field theory: Dynamics and irreversibility,” <i>Anales de la Asociacion Fisica Argentina</i>, vol. 32, no. 4. Asociación Física Argentina, pp. 93–98, 2022.","ama":"Daguerre L, Torroba G, Medina Ramos RA, Solís M. Non relativistic quantum field theory: Dynamics and irreversibility. <i>Anales de la Asociacion Fisica Argentina</i>. 2022;32(4):93-98. doi:<a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">10.31527/analesafa.2021.32.4.93</a>","ista":"Daguerre L, Torroba G, Medina Ramos RA, Solís M. 2022. Non relativistic quantum field theory: Dynamics and irreversibility. Anales de la Asociacion Fisica Argentina. 32(4), 93–98.","chicago":"Daguerre, L., G. Torroba, Raimel A Medina Ramos, and M. Solís. “Non relativistic quantum field theory: Dynamics and irreversibility.” <i>Anales de la Asociacion Fisica Argentina</i>. Asociación Física Argentina, 2022. <a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">https://doi.org/10.31527/analesafa.2021.32.4.93</a>.","mla":"Daguerre, L., et al. “Non relativistic quantum field theory: Dynamics and irreversibility.” <i>Anales de la Asociacion Fisica Argentina</i>, vol. 32, no. 4, Asociación Física Argentina, 2022, pp. 93–98, doi:<a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">10.31527/analesafa.2021.32.4.93</a>.","short":"L. Daguerre, G. Torroba, R.A. Medina Ramos, M. Solís, Anales de la Asociacion Fisica Argentina 32 (2022) 93–98."},"abstract":[{"text":"studiamos aspectos de Teoría Cuántica de Campos a densidad finita usando técnicas y conceptos de información cuántica. Nos enfocamos en fermiones de Dirac masivos con potencial químico en 1+1 dimensiones espacio-temporales. Usando la entropía de entrelazamiento en un intervalo, construimos la función c entrópica que es finita. Esta función c no es monótona, e incorpora el entrelazamiento de largo alcance proveniente de la superficie de Fermi. Motivados por trabajos previos de modelos en la red, calculamos numéricamente las entropías de Renyi y encontramos oscilaciones de Friedel. Seguidamente, analizamos la información mutua como una medida de correlación entre diferentes regiones. Usando una expansión de distancia grande desarrollada por Cardy, argumentamos que la información mutua detecta las correlaciones inducidas por la superficie de Fermi todavía al orden dominante en la expansión. Finalmente, analizamos la entropía relativa y sus generalizaciones de Renyi para distinguir estados con diferente carga. Encontramos que estados en diferentes sectores de superselección dan origen a un comportamiento super-extensivo en la entropía relativa.","lang":"eng"}],"type":"journal_article","_id":"10769","issue":"4","scopus_import":"1","month":"01","date_created":"2022-02-20T23:01:32Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","publication":"Anales de la Asociacion Fisica Argentina","OA_place":"publisher","ddc":["530"],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_published":"2022-01-13T00:00:00Z","intvolume":"        32","oa":1,"file":[{"access_level":"open_access","success":1,"date_created":"2022-02-21T09:32:44Z","file_name":"2022_AnalesAFA_Daguerre.pdf","creator":"dernst","file_size":4505751,"checksum":"ca66a3017205677c5b4d22b3bb74fb0b","content_type":"application/pdf","relation":"main_file","date_updated":"2022-02-21T09:32:44Z","file_id":"10782"}],"doi":"10.31527/analesafa.2021.32.4.93","day":"13","year":"2022","publication_identifier":{"eissn":["1850-1168"]},"article_type":"original","acknowledgement":"Se agradece a Horacio Casini por distintas discusiones y comentarios a lo largo del trabajo. LD cuenta con el apoyo de CNEA y UNCuyo, Inst. GT cuenta con el apoyo de CONICET,\r\nANPCyT, CNEA, y UNCuyo, Inst. Balseiro. RM cuenta con el apoyo de IST Austria. MS cuenta con el apoyode CONICET y UNCuyo, Inst. Balseiro. También se agradece a la Asociación Argentina de Física por la posibilidad de presentar este artículo en el marco de una Mención Especial por el Premio Luis Másperi 2020.","date_updated":"2026-04-02T12:30:12Z","page":"93-98","author":[{"last_name":"Daguerre","full_name":"Daguerre, L.","first_name":"L."},{"first_name":"G.","last_name":"Torroba","full_name":"Torroba, G."},{"orcid":"0000-0002-5383-2869","full_name":"Medina Ramos, Raimel A","last_name":"Medina Ramos","id":"CE680B90-D85A-11E9-B684-C920E6697425","first_name":"Raimel A"},{"first_name":"M.","full_name":"Solís, M.","last_name":"Solís"}],"title":"Non relativistic quantum field theory: Dynamics and irreversibility","article_processing_charge":"No","has_accepted_license":"1","file_date_updated":"2022-02-21T09:32:44Z","status":"public","language":[{"iso":"spa"}],"oa_version":"Published Version","DOAJ_listed":"1"},{"_id":"11333","month":"05","scopus_import":"1","issue":"30","publication_status":"published","date_created":"2022-04-24T22:01:44Z","external_id":{"pmid":["35332959"],"isi":["000781658800001"]},"volume":28,"department":[{"_id":"RySh"}],"publisher":"Wiley","main_file_link":[{"url":"https://doi.org/10.1002/chem.202200807","open_access":"1"}],"abstract":[{"lang":"eng","text":"Adenosine triphosphate (ATP) is the energy source for various biochemical processes and biomolecular motors in living things. Development of ATP antagonists and their stimuli-controlled actions offer a novel approach to regulate biological processes. Herein, we developed azobenzene-based photoswitchable ATP antagonists for controlling the activity of motor proteins; cytoplasmic and axonemal dyneins. The new ATP antagonists showed reversible photoswitching of cytoplasmic dynein activity in an in vitro dynein-microtubule system due to the trans and cis photoisomerization of their azobenzene segment. Importantly, our ATP antagonists reversibly regulated the axonemal dynein motor activity for the force generation in a demembranated model of Chlamydomonas reinhardtii. We found that the trans and cis isomers of ATP antagonists significantly differ in their affinity to the ATP binding site."}],"pmid":1,"type":"journal_article","citation":{"short":"S. Thayyil, Y. Nishigami, M.J. Islam, P.K. Hashim, K. Furuta, K. Oiwa, J. Yu, M. Yao, T. Nakagaki, N. Tamaoki, Chemistry - A European Journal 28 (2022).","chicago":"Thayyil, Sampreeth, Yukinori Nishigami, Muhammad J Islam, P. K. Hashim, Ken’Ya Furuta, Kazuhiro Oiwa, Jian Yu, Min Yao, Toshiyuki Nakagaki, and Nobuyuki Tamaoki. “Dynamic Control of Microbial Movement by Photoswitchable ATP Antagonists.” <i>Chemistry - A European Journal</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/chem.202200807\">https://doi.org/10.1002/chem.202200807</a>.","ista":"Thayyil S, Nishigami Y, Islam MJ, Hashim PK, Furuta K, Oiwa K, Yu J, Yao M, Nakagaki T, Tamaoki N. 2022. Dynamic control of microbial movement by photoswitchable ATP antagonists. Chemistry - A European Journal. 28(30), e202200807.","mla":"Thayyil, Sampreeth, et al. “Dynamic Control of Microbial Movement by Photoswitchable ATP Antagonists.” <i>Chemistry - A European Journal</i>, vol. 28, no. 30, e202200807, Wiley, 2022, doi:<a href=\"https://doi.org/10.1002/chem.202200807\">10.1002/chem.202200807</a>.","apa":"Thayyil, S., Nishigami, Y., Islam, M. J., Hashim, P. K., Furuta, K., Oiwa, K., … Tamaoki, N. (2022). Dynamic control of microbial movement by photoswitchable ATP antagonists. <i>Chemistry - A European Journal</i>. Wiley. <a href=\"https://doi.org/10.1002/chem.202200807\">https://doi.org/10.1002/chem.202200807</a>","ieee":"S. Thayyil <i>et al.</i>, “Dynamic control of microbial movement by photoswitchable ATP antagonists,” <i>Chemistry - A European Journal</i>, vol. 28, no. 30. Wiley, 2022.","ama":"Thayyil S, Nishigami Y, Islam MJ, et al. Dynamic control of microbial movement by photoswitchable ATP antagonists. <i>Chemistry - A European Journal</i>. 2022;28(30). doi:<a href=\"https://doi.org/10.1002/chem.202200807\">10.1002/chem.202200807</a>"},"quality_controlled":"1","title":"Dynamic control of microbial movement by photoswitchable ATP antagonists","author":[{"last_name":"Thayyil","full_name":"Thayyil, Sampreeth","first_name":"Sampreeth"},{"first_name":"Yukinori","last_name":"Nishigami","full_name":"Nishigami, Yukinori"},{"full_name":"Islam, Muhammad J","last_name":"Islam","id":"C94881D2-008F-11EA-8E08-2637E6697425","first_name":"Muhammad J"},{"first_name":"P. K.","full_name":"Hashim, P. K.","last_name":"Hashim"},{"first_name":"Ken'Ya","last_name":"Furuta","full_name":"Furuta, Ken'Ya"},{"full_name":"Oiwa, Kazuhiro","last_name":"Oiwa","first_name":"Kazuhiro"},{"full_name":"Yu, Jian","last_name":"Yu","first_name":"Jian"},{"last_name":"Yao","full_name":"Yao, Min","first_name":"Min"},{"first_name":"Toshiyuki","last_name":"Nakagaki","full_name":"Nakagaki, Toshiyuki"},{"first_name":"Nobuyuki","full_name":"Tamaoki, Nobuyuki","last_name":"Tamaoki"}],"date_updated":"2026-04-02T11:59:00Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","oa_version":"Published Version","publication":"Chemistry - A European Journal","isi":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","doi":"10.1002/chem.202200807","day":"25","oa":1,"intvolume":"        28","date_published":"2022-05-25T00:00:00Z","article_number":"e202200807","article_type":"original","year":"2022","publication_identifier":{"issn":["0947-6539"],"eissn":["1521-3765"]}},{"quality_controlled":"1","citation":{"short":"J. Slovakova, M.K. Sikora, F.N. Arslan, S. Caballero Mancebo, G. Krens, W. Kaufmann, J. Merrin, C.-P.J. Heisenberg, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).","apa":"Slovakova, J., Sikora, M. K., Arslan, F. N., Caballero Mancebo, S., Krens, G., Kaufmann, W., … Heisenberg, C.-P. J. (2022). Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2122030119\">https://doi.org/10.1073/pnas.2122030119</a>","ama":"Slovakova J, Sikora MK, Arslan FN, et al. Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2022;119(8). doi:<a href=\"https://doi.org/10.1073/pnas.2122030119\">10.1073/pnas.2122030119</a>","ieee":"J. Slovakova <i>et al.</i>, “Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 119, no. 8. National Academy of Sciences, 2022.","ista":"Slovakova J, Sikora MK, Arslan FN, Caballero Mancebo S, Krens G, Kaufmann W, Merrin J, Heisenberg C-PJ. 2022. Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells. Proceedings of the National Academy of Sciences of the United States of America. 119(8), e2122030119.","chicago":"Slovakova, Jana, Mateusz K Sikora, Feyza N Arslan, Silvia Caballero Mancebo, Gabriel Krens, Walter Kaufmann, Jack Merrin, and Carl-Philipp J Heisenberg. “Tension-Dependent Stabilization of E-Cadherin Limits Cell-Cell Contact Expansion in Zebrafish Germ-Layer Progenitor Cells.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2022. <a href=\"https://doi.org/10.1073/pnas.2122030119\">https://doi.org/10.1073/pnas.2122030119</a>.","mla":"Slovakova, Jana, et al. “Tension-Dependent Stabilization of E-Cadherin Limits Cell-Cell Contact Expansion in Zebrafish Germ-Layer Progenitor Cells.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 119, no. 8, e2122030119, National Academy of Sciences, 2022, doi:<a href=\"https://doi.org/10.1073/pnas.2122030119\">10.1073/pnas.2122030119</a>."},"abstract":[{"text":"Tension of the actomyosin cell cortex plays a key role in determining cell–cell contact growth and size. The level of cortical tension outside of the cell–cell contact, when pulling at the contact edge, scales with the total size to which a cell–cell contact can grow [J.-L. Maître et al., Science 338, 253–256 (2012)]. Here, we show in zebrafish primary germ-layer progenitor cells that this monotonic relationship only applies to a narrow range of cortical tension increase and that above a critical threshold, contact size inversely scales with cortical tension. This switch from cortical tension increasing to decreasing progenitor cell–cell contact size is caused by cortical tension promoting E-cadherin anchoring to the actomyosin cytoskeleton, thereby increasing clustering and stability of E-cadherin at the contact. After tension-mediated E-cadherin stabilization at the contact exceeds a critical threshold level, the rate by which the contact expands in response to pulling forces from the cortex sharply drops, leading to smaller contacts at physiologically relevant timescales of contact formation. Thus, the activity of cortical tension in expanding cell–cell contact size is limited by tension-stabilizing E-cadherin–actin complexes at the contact.","lang":"eng"}],"pmid":1,"type":"journal_article","department":[{"_id":"CaHe"},{"_id":"EM-Fac"},{"_id":"Bio"}],"volume":119,"publisher":"National Academy of Sciences","corr_author":"1","date_created":"2022-02-20T23:01:31Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"publication_status":"published","external_id":{"isi":["000766926900009"],"pmid":["35165179"]},"_id":"10766","issue":"8","scopus_import":"1","month":"02","date_published":"2022-02-14T00:00:00Z","intvolume":"       119","file":[{"content_type":"application/pdf","checksum":"d49f83c3580613966f71768ddb9a55a5","relation":"main_file","date_updated":"2022-02-21T08:45:11Z","file_id":"10780","access_level":"open_access","creator":"dernst","file_size":1609678,"file_name":"2022_PNAS_Slovakova.pdf","date_created":"2022-02-21T08:45:11Z","success":1}],"oa":1,"doi":"10.1073/pnas.2122030119","day":"14","article_type":"original","acknowledgement":"We thank Guillaume Salbreaux, Silvia Grigolon, Edouard Hannezo, and Vanessa Barone for discussions and comments on the manuscript and Shayan Shamipour and Daniel Capek for help with data analysis. We also thank the Imaging & Optics, Electron Microscopy, and Zebrafish Facility Scientific Service Units at the Institute of Science and Technology Austria (ISTA)Nasser Darwish-Miranda  for continuous support. We acknowledge Hitoshi Morita for the gift of VinculinB-GFP plasmid. This research was supported by an ISTA Fellow Marie-Curie Co-funding of regional, national, and international programmes Grant P_IST_EU01 (to J.S.), European Molecular Biology Organization Long-Term Fellowship Grant, ALTF reference number: 187-2013 (to M.S.), Schroedinger Fellowship J4332-B28 (to M.S.), and European Research Council Advanced Grant (MECSPEC; to C.-P.H.).","publication_identifier":{"eissn":["1091-6490"]},"year":"2022","ec_funded":1,"article_number":"e2122030119","acknowledged_ssus":[{"_id":"Bio"},{"_id":"EM-Fac"},{"_id":"PreCl"}],"isi":1,"publication":"Proceedings of the National Academy of Sciences of the United States of America","ddc":["570"],"project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"},{"grant_number":"742573","name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","_id":"260F1432-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"Modulation of adhesion function in cell-cell contact formation by cortical tension","_id":"2521E28E-B435-11E9-9278-68D0E5697425","grant_number":"187-2013"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","oa_version":"Published Version","related_material":{"record":[{"id":"9750","relation":"earlier_version","status":"public"}]},"date_updated":"2026-04-02T12:54:56Z","author":[{"first_name":"Jana","last_name":"Slovakova","full_name":"Slovakova, Jana","id":"30F3F2F0-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sikora, Mateusz K","last_name":"Sikora","id":"2F74BCDE-F248-11E8-B48F-1D18A9856A87","first_name":"Mateusz K"},{"first_name":"Feyza N","full_name":"Arslan, Feyza N","last_name":"Arslan","id":"49DA7910-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5809-9566"},{"first_name":"Silvia","orcid":"0000-0002-5223-3346","full_name":"Caballero Mancebo, Silvia","last_name":"Caballero Mancebo","id":"2F1E1758-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Gabriel","orcid":"0000-0003-4761-5996","last_name":"Krens","full_name":"Krens, Gabriel","id":"2B819732-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Walter","orcid":"0000-0001-9735-5315","last_name":"Kaufmann","full_name":"Kaufmann, Walter","id":"3F99E422-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jack","id":"4515C308-F248-11E8-B48F-1D18A9856A87","last_name":"Merrin","full_name":"Merrin, Jack","orcid":"0000-0001-5145-4609"},{"first_name":"Carl-Philipp J","last_name":"Heisenberg","full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566"}],"title":"Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells","has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2022-02-21T08:45:11Z","language":[{"iso":"eng"}],"status":"public"},{"quality_controlled":"1","citation":{"short":"L. Qiu, G. Huang, I. Shomroni, J. Pan, P. Seidler, T.J. Kippenberg, PRX Quantum 3 (2022).","ieee":"L. Qiu, G. Huang, I. Shomroni, J. Pan, P. Seidler, and T. J. Kippenberg, “Dissipative quantum feedback in measurements using a parametrically coupled microcavity,” <i>PRX Quantum</i>, vol. 3, no. 2. American Physical Society, 2022.","apa":"Qiu, L., Huang, G., Shomroni, I., Pan, J., Seidler, P., &#38; Kippenberg, T. J. (2022). Dissipative quantum feedback in measurements using a parametrically coupled microcavity. <i>PRX Quantum</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PRXQuantum.3.020309\">https://doi.org/10.1103/PRXQuantum.3.020309</a>","ama":"Qiu L, Huang G, Shomroni I, Pan J, Seidler P, Kippenberg TJ. Dissipative quantum feedback in measurements using a parametrically coupled microcavity. <i>PRX Quantum</i>. 2022;3(2). doi:<a href=\"https://doi.org/10.1103/PRXQuantum.3.020309\">10.1103/PRXQuantum.3.020309</a>","ista":"Qiu L, Huang G, Shomroni I, Pan J, Seidler P, Kippenberg TJ. 2022. Dissipative quantum feedback in measurements using a parametrically coupled microcavity. PRX Quantum. 3(2), 020309.","chicago":"Qiu, Liu, Guanhao Huang, Itay Shomroni, Jiahe Pan, Paul Seidler, and Tobias J. Kippenberg. “Dissipative Quantum Feedback in Measurements Using a Parametrically Coupled Microcavity.” <i>PRX Quantum</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/PRXQuantum.3.020309\">https://doi.org/10.1103/PRXQuantum.3.020309</a>.","mla":"Qiu, Liu, et al. “Dissipative Quantum Feedback in Measurements Using a Parametrically Coupled Microcavity.” <i>PRX Quantum</i>, vol. 3, no. 2, 020309, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/PRXQuantum.3.020309\">10.1103/PRXQuantum.3.020309</a>."},"abstract":[{"text":"Micro- and nanoscale optical or microwave cavities are used in a wide range of classical applications and quantum science experiments, ranging from precision measurements, laser technologies to quantum control of mechanical motion. The dissipative photon loss via absorption, present to some extent in any optical cavity, is known to introduce thermo-optical effects and thereby impose fundamental limits on precision measurements. Here, we theoretically and experimentally reveal that such dissipative photon absorption can result in quantum feedback via in-loop field detection of the absorbed optical field, leading to the intracavity field fluctuations to be squashed or antisquashed. A closed-loop dissipative quantum feedback to the cavity field arises. Strikingly, this modifies the optical cavity susceptibility in coherent response measurements (capable of both increasing or decreasing the bare cavity linewidth) and causes excess noise and correlations in incoherent interferometric optomechanical measurements using a cavity, that is parametrically coupled to a mechanical oscillator. We experimentally observe such unanticipated dissipative dynamics in optomechanical spectroscopy of sideband-cooled optomechanical crystal cavitiess at both cryogenic temperature (approximately 8 K) and ambient conditions. The dissipative feedback introduces effective modifications to the optical cavity linewidth and the optomechanical scattering rate and gives rise to excess imprecision noise in the interferometric quantum measurement of mechanical motion. Such dissipative feedback differs fundamentally from a quantum nondemolition feedback, e.g., optical Kerr squeezing. The dissipative feedback itself always results in an antisqueezed out-of-loop optical field, while it can enhance the coexisting Kerr squeezing under certain conditions. Our result applies to cavity spectroscopy in both optical and superconducting microwave cavities, and equally applies to any dissipative feedback mechanism of different bandwidth inside the cavity. It has wide-ranging implications for future dissipation engineering, such as dissipation enhanced sideband cooling and Kerr squeezing, quantum frequency conversion, and nonreciprocity in photonic systems.","lang":"eng"}],"type":"journal_article","department":[{"_id":"JoFi"}],"volume":3,"publisher":"American Physical Society","date_created":"2022-05-08T22:01:43Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","external_id":{"isi":["000789316700001"]},"_id":"11353","scopus_import":"1","issue":"2","month":"04","date_published":"2022-04-13T00:00:00Z","intvolume":"         3","oa":1,"file":[{"file_id":"11358","date_updated":"2022-05-09T07:10:51Z","relation":"main_file","checksum":"35ff9ddf1d54f64432e435b660edaeb6","content_type":"application/pdf","file_size":1657177,"creator":"dernst","file_name":"2022_PRXQuantum_Qiu.pdf","success":1,"date_created":"2022-05-09T07:10:51Z","access_level":"open_access"}],"day":"13","doi":"10.1103/PRXQuantum.3.020309","article_type":"original","acknowledgement":"L.Q. acknowledges fruitful discussions with D. Vitali, R. Schnabel, P.K. Lam, A. Nunnenkamp, and D. Malz. This work is supported by the EUH2020 research and innovation programme under Grant No. 732894 (FET Proactive HOT), and the European Research Council through \r\nGrant No. 835329 (ExCOM-cCEO). This work was further supported by Swiss National Science Foundation under Grant Agreements No. 185870 (Ambizione) and No. 204927. Samples were fabricated at the Center of MicroNanoTechnology (CMi) at EPFL and the Binnig and Rohrer Nanotechnology Center at IBM Research-Zurich.","year":"2022","publication_identifier":{"eissn":["2691-3399"]},"ec_funded":1,"article_number":"020309","isi":1,"publication":"PRX Quantum","ddc":["530"],"project":[{"call_identifier":"H2020","_id":"257EB838-B435-11E9-9278-68D0E5697425","name":"Hybrid Optomechanical Technologies","grant_number":"732894"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","oa_version":"Published Version","date_updated":"2026-04-02T12:30:47Z","title":"Dissipative quantum feedback in measurements using a parametrically coupled microcavity","author":[{"first_name":"Liu","orcid":"0000-0003-4345-4267","last_name":"Qiu","full_name":"Qiu, Liu","id":"45e99c0d-1eb1-11eb-9b96-ed8ab2983cac"},{"first_name":"Guanhao","full_name":"Huang, Guanhao","last_name":"Huang"},{"full_name":"Shomroni, Itay","last_name":"Shomroni","first_name":"Itay"},{"last_name":"Pan","full_name":"Pan, Jiahe","first_name":"Jiahe"},{"first_name":"Paul","last_name":"Seidler","full_name":"Seidler, Paul"},{"last_name":"Kippenberg","full_name":"Kippenberg, Tobias J.","first_name":"Tobias J."}],"article_processing_charge":"No","has_accepted_license":"1","file_date_updated":"2022-05-09T07:10:51Z","status":"public","language":[{"iso":"eng"}]},{"oa":1,"file":[{"date_created":"2022-03-07T07:39:25Z","file_name":"2022_eLife_Valperga.pdf","success":1,"file_size":4095591,"creator":"dernst","access_level":"open_access","file_id":"10830","date_updated":"2022-03-07T07:39:25Z","relation":"main_file","content_type":"application/pdf","checksum":"cc1b9bf866d0f61f965556e0dd03d3ac"}],"doi":"10.7554/eLife.68040","day":"24","date_published":"2022-02-24T00:00:00Z","intvolume":"        11","article_number":"e68040","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"ScienComp"}],"acknowledgement":"We would like to thank Gemma Chandratillake and Merav Cohen for identifying mutants and José David Moñino Sánchez for his help on neurosecretion assays. We are grateful to Kaveh Ashrafi (UCSF), Piali Sengupta (Brandeis), and the Caenorhabditis Genetic Center (funded by National Institutes of Health Infrastructure Program P40 OD010440) for strains and reagents ... and Rebecca Butcher (Univ. Florida) for C9 pheromone. We thank Tim Stevens, Paula Freire-Pritchett, Alastair Crisp, GurpreetGhattaoraya, and Fabian Amman for help with bioinformatic analysis, Ekaterina Lashmanova for help with injections, Iris Hardege for strains, and Isabel Beets (KU Leuven) and members of the de Bono Lab for comments on the manuscript. We thank the CRUK Cambridge Research Institute Genomics Core for next generation sequencing and the Flow Cytometry Facility at LMB for FACS. This research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by the Bioimaging Facility (BIF), the Life Science Facility (LSF) and Scientific Computing (SciCo-p– Bioinformatics).\r\nThis work was supported by the Medical Research Council UK (Studentship to GV), an\r\nAdvanced ERC grant (269,058 ACMO to MdB), and a Wellcome Investigator Award (209504/Z/17/Z to MdB).","publication_identifier":{"eissn":["2050-084X"]},"year":"2022","article_type":"original","isi":1,"publication":"eLife","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","project":[{"grant_number":"209504/A/17/Z","name":"Molecular mechanisms of neural circuit function","_id":"23870BE8-32DE-11EA-91FC-C7463DDC885E"}],"ddc":["570"],"oa_version":"Published Version","title":"Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans","author":[{"full_name":"Valperga, Giulio","last_name":"Valperga","id":"67F289DE-0D8F-11EA-9BDD-54AE3DDC885E","orcid":"0000-0001-6726-3890","first_name":"Giulio"},{"first_name":"Mario","last_name":"De Bono","full_name":"De Bono, Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8347-0443"}],"date_updated":"2026-04-02T12:45:39Z","language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","has_accepted_license":"1","file_date_updated":"2022-03-07T07:39:25Z","citation":{"short":"G. Valperga, M. de Bono, ELife 11 (2022).","mla":"Valperga, Giulio, and Mario de Bono. “Impairing One Sensory Modality Enhances Another by Reconfiguring Peptidergic Signalling in Caenorhabditis Elegans.” <i>ELife</i>, vol. 11, e68040, eLife Sciences Publications, 2022, doi:<a href=\"https://doi.org/10.7554/eLife.68040\">10.7554/eLife.68040</a>.","ista":"Valperga G, de Bono M. 2022. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. eLife. 11, e68040.","chicago":"Valperga, Giulio, and Mario de Bono. “Impairing One Sensory Modality Enhances Another by Reconfiguring Peptidergic Signalling in Caenorhabditis Elegans.” <i>ELife</i>. eLife Sciences Publications, 2022. <a href=\"https://doi.org/10.7554/eLife.68040\">https://doi.org/10.7554/eLife.68040</a>.","apa":"Valperga, G., &#38; de Bono, M. (2022). Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.68040\">https://doi.org/10.7554/eLife.68040</a>","ama":"Valperga G, de Bono M. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. <i>eLife</i>. 2022;11. doi:<a href=\"https://doi.org/10.7554/eLife.68040\">10.7554/eLife.68040</a>","ieee":"G. Valperga and M. de Bono, “Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans,” <i>eLife</i>, vol. 11. eLife Sciences Publications, 2022."},"type":"journal_article","abstract":[{"lang":"eng","text":"Animals that lose one sensory modality often show augmented responses to other sensory inputs. The mechanisms underpinning this cross-modal plasticity are poorly understood. We probe such mechanisms by performing a forward genetic screen for mutants with enhanced O2 perception in Caenorhabditis elegans. Multiple mutants exhibiting increased O2 responsiveness concomitantly show defects in other sensory responses. One mutant, qui-1, defective in a conserved NACHT/WD40 protein, abolishes pheromone-evoked Ca2+ responses in the ADL pheromone-sensing neurons. At the same time, ADL responsiveness to pre-synaptic input from O2-sensing neurons is heightened in qui-1, and other sensory defective mutants, resulting in enhanced neurosecretion although not increased Ca2+ responses. Expressing qui-1 selectively in ADL rescues both the qui-1 ADL neurosecretory phenotype and enhanced escape from 21% O2. Profiling ADL neurons in qui-1 mutants highlights extensive changes in gene expression, notably of many neuropeptide receptors. We show that elevated ADL expression of the conserved neuropeptide receptor NPR-22 is necessary for enhanced ADL neurosecretion in qui-1 mutants, and is sufficient to confer increased ADL neurosecretion in control animals. Sensory loss can thus confer cross-modal plasticity by changing the peptidergic connectome."}],"pmid":1,"quality_controlled":"1","volume":11,"department":[{"_id":"MaDe"}],"corr_author":"1","publisher":"eLife Sciences Publications","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","date_created":"2022-03-06T23:01:52Z","external_id":{"pmid":["35201977"],"isi":["000763432300001"]},"_id":"10826","month":"02","scopus_import":"1"},{"oa_version":"Published Version","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","has_accepted_license":"1","file_date_updated":"2022-03-07T08:15:01Z","author":[{"last_name":"Hasler","full_name":"Hasler, Roger","first_name":"Roger"},{"first_name":"Ciril","last_name":"Reiner-Rozman","full_name":"Reiner-Rozman, Ciril"},{"full_name":"Fossati, Stefan","last_name":"Fossati","first_name":"Stefan"},{"first_name":"Patrik","last_name":"Aspermair","full_name":"Aspermair, Patrik"},{"full_name":"Dostalek, Jakub","last_name":"Dostalek","first_name":"Jakub"},{"first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425","full_name":"Lee, Seungho","last_name":"Lee","orcid":"0000-0002-6962-8598"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Johannes","full_name":"Bintinger, Johannes","last_name":"Bintinger"},{"first_name":"Wolfgang","last_name":"Knoll","full_name":"Knoll, Wolfgang"}],"title":"Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device","page":"504-512","related_material":{"record":[{"status":"public","id":"10833","relation":"research_data"}]},"date_updated":"2026-04-02T12:33:46Z","acknowledgement":"This project has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement No. 813863-\r\nBORGES. Additionally, we gratefully acknowledge the financial support from the Austrian Research Promotion Agency (FFG; 870025 and 873541) for this research. The data that support the findings of this study are openly available in Zenodo (DOI: 10.5281/zenodo.5500360)","publication_identifier":{"eissn":["2379-3694"]},"article_type":"original","year":"2022","file":[{"relation":"main_file","content_type":"application/pdf","checksum":"d704af7262cd484da9bb84b7d84e2b09","file_id":"10832","date_updated":"2022-03-07T08:15:01Z","access_level":"open_access","date_created":"2022-03-07T08:15:01Z","file_name":"2022_ACSSensors_Hasler.pdf","success":1,"file_size":2969415,"creator":"dernst"}],"oa":1,"doi":"10.1021/acssensors.1c02313","day":"08","date_published":"2022-02-08T00:00:00Z","intvolume":"         7","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["540"],"isi":1,"publication":"ACS Sensors","external_id":{"isi":["000765113000016"],"pmid":["35134289"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"publication_status":"published","date_created":"2022-03-06T23:01:54Z","month":"02","issue":"2","scopus_import":"1","_id":"10829","citation":{"apa":"Hasler, R., Reiner-Rozman, C., Fossati, S., Aspermair, P., Dostalek, J., Lee, S., … Knoll, W. (2022). Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. <i>ACS Sensors</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acssensors.1c02313\">https://doi.org/10.1021/acssensors.1c02313</a>","ieee":"R. Hasler <i>et al.</i>, “Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device,” <i>ACS Sensors</i>, vol. 7, no. 2. American Chemical Society, pp. 504–512, 2022.","ama":"Hasler R, Reiner-Rozman C, Fossati S, et al. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. <i>ACS Sensors</i>. 2022;7(2):504-512. doi:<a href=\"https://doi.org/10.1021/acssensors.1c02313\">10.1021/acssensors.1c02313</a>","ista":"Hasler R, Reiner-Rozman C, Fossati S, Aspermair P, Dostalek J, Lee S, Ibáñez M, Bintinger J, Knoll W. 2022. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. ACS Sensors. 7(2), 504–512.","chicago":"Hasler, Roger, Ciril Reiner-Rozman, Stefan Fossati, Patrik Aspermair, Jakub Dostalek, Seungho Lee, Maria Ibáñez, Johannes Bintinger, and Wolfgang Knoll. “Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device.” <i>ACS Sensors</i>. American Chemical Society, 2022. <a href=\"https://doi.org/10.1021/acssensors.1c02313\">https://doi.org/10.1021/acssensors.1c02313</a>.","mla":"Hasler, Roger, et al. “Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device.” <i>ACS Sensors</i>, vol. 7, no. 2, American Chemical Society, 2022, pp. 504–12, doi:<a href=\"https://doi.org/10.1021/acssensors.1c02313\">10.1021/acssensors.1c02313</a>.","short":"R. Hasler, C. Reiner-Rozman, S. Fossati, P. Aspermair, J. Dostalek, S. Lee, M. Ibáñez, J. Bintinger, W. Knoll, ACS Sensors 7 (2022) 504–512."},"abstract":[{"text":"A novel multivariable system, combining a transistor with fiber optic-based surface plasmon resonance spectroscopy with the gate electrode simultaneously acting as the fiber optic sensor surface, is reported. The dual-mode sensor allows for discrimination of mass and charge contributions for binding assays on the same sensor surface. Furthermore, we optimize the sensor geometry by investigating the influence of the fiber area to transistor channel area ratio and distance. We show that larger fiber optic tip diameters are favorable for electronic and optical signals and demonstrate the reversibility of plasmon resonance wavelength shifts after electric field application. As a proof of principle, a layer-by-layer assembly of polyelectrolytes is performed to benchmark the system against multivariable sensing platforms with planar surface plasmon resonance configurations. Furthermore, the biosensing performance is assessed using a thrombin binding assay with surface-immobilized aptamers as receptors, allowing for the detection of medically relevant thrombin concentrations.","lang":"eng"}],"type":"journal_article","pmid":1,"quality_controlled":"1","publisher":"American Chemical Society","volume":7,"department":[{"_id":"MaIb"}]},{"oa_version":"Preprint","date_updated":"2026-04-02T12:37:16Z","title":"High-pressure phase behaviors of titanium dioxide revealed by a Δ-learning potential","author":[{"first_name":"Jacob G.","last_name":"Lee","full_name":"Lee, Jacob G."},{"last_name":"Pickard","full_name":"Pickard, Chris J.","first_name":"Chris J."},{"first_name":"Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng","full_name":"Cheng, Bingqing","orcid":"0000-0002-3584-9632"}],"article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","intvolume":"       156","date_published":"2022-02-16T00:00:00Z","day":"16","doi":"10.1063/5.0079844","oa":1,"article_type":"original","acknowledgement":"J.G.L. and B.C. acknowledge the resources provided by the Cambridge Tier-2 system operated by the University of Cambridge Research Computing Service funded by the EPSRC Tier-2 capital (Grant No. EP/P020259/1).","publication_identifier":{"eissn":["1089-7690"]},"year":"2022","article_number":"074106","arxiv":1,"publication":"The Journal of chemical physics","isi":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_created":"2022-03-06T23:01:53Z","publication_status":"published","external_id":{"isi":["000796704500014"],"arxiv":["2111.12968"],"pmid":["35183078"]},"_id":"10827","issue":"7","scopus_import":"1","month":"02","quality_controlled":"1","pmid":1,"type":"journal_article","abstract":[{"text":"Titanium dioxide has been extensively studied in the rutile or anatase phase, while its high-pressure phases are less well-understood, despite that many are thought to have interesting optical, mechanical, and electrochemical properties. First-principles methods, such as density functional theory (DFT), are often used to compute the enthalpies of TiO2 phases at 0 K, but they are expensive and, thus, impractical for long time scale and large system-size simulations at finite temperatures. On the other hand, cheap empirical potentials fail to capture the relative stabilities of various polymorphs. To model the thermodynamic behaviors of ambient and high-pressure phases of TiO2, we design an empirical model as a baseline and then train a machine learning potential based on the difference between the DFT data and the empirical model. This so-called Δ-learning potential contains long-range electrostatic interactions and predicts the 0 K enthalpies of stable TiO2 phases that are in good agreement with DFT. We construct a pressure–temperature phase diagram of TiO2 in the range 0 < P < 70 GPa and 100 < T < 1500 K. We then simulate dynamic phase transition processes by compressing anatase at different temperatures. At 300 K, we predominantly observe an anatase-to-baddeleyite transformation at about 20 GPa via a martensitic two-step mechanism with a highly ordered and collective atomic motion. At 2000 K, anatase can transform into cotunnite around 45–55 GPa in a thermally activated and probabilistic manner, accompanied by diffusive movement of oxygen atoms. The pressures computed for these transitions show good agreement with experiments. Our results shed light on how to synthesize and stabilize high-pressure TiO2 phases, and our method is generally applicable to other functional materials with multiple polymorphs.","lang":"eng"}],"citation":{"ieee":"J. G. Lee, C. J. Pickard, and B. Cheng, “High-pressure phase behaviors of titanium dioxide revealed by a Δ-learning potential,” <i>The Journal of chemical physics</i>, vol. 156, no. 7. AIP Publishing, 2022.","ama":"Lee JG, Pickard CJ, Cheng B. High-pressure phase behaviors of titanium dioxide revealed by a Δ-learning potential. <i>The Journal of chemical physics</i>. 2022;156(7). doi:<a href=\"https://doi.org/10.1063/5.0079844\">10.1063/5.0079844</a>","apa":"Lee, J. G., Pickard, C. J., &#38; Cheng, B. (2022). High-pressure phase behaviors of titanium dioxide revealed by a Δ-learning potential. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0079844\">https://doi.org/10.1063/5.0079844</a>","mla":"Lee, Jacob G., et al. “High-Pressure Phase Behaviors of Titanium Dioxide Revealed by a Δ-Learning Potential.” <i>The Journal of Chemical Physics</i>, vol. 156, no. 7, 074106, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0079844\">10.1063/5.0079844</a>.","chicago":"Lee, Jacob G., Chris J. Pickard, and Bingqing Cheng. “High-Pressure Phase Behaviors of Titanium Dioxide Revealed by a Δ-Learning Potential.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0079844\">https://doi.org/10.1063/5.0079844</a>.","ista":"Lee JG, Pickard CJ, Cheng B. 2022. High-pressure phase behaviors of titanium dioxide revealed by a Δ-learning potential. The Journal of chemical physics. 156(7), 074106.","short":"J.G. Lee, C.J. Pickard, B. Cheng, The Journal of Chemical Physics 156 (2022)."},"department":[{"_id":"BiCh"}],"volume":156,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2111.12968"}],"publisher":"AIP Publishing","corr_author":"1"},{"oa_version":"Preprint","article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"date_updated":"2026-04-02T12:45:15Z","author":[{"first_name":"Ferdinand","full_name":"Evers, Ferdinand","last_name":"Evers"},{"last_name":"Aharony","full_name":"Aharony, Amnon","first_name":"Amnon"},{"last_name":"Bar-Gill","full_name":"Bar-Gill, Nir","first_name":"Nir"},{"first_name":"Ora","full_name":"Entin-Wohlman, Ora","last_name":"Entin-Wohlman"},{"first_name":"Per","last_name":"Hedegård","full_name":"Hedegård, Per"},{"first_name":"Oded","full_name":"Hod, Oded","last_name":"Hod"},{"first_name":"Pavel","full_name":"Jelinek, Pavel","last_name":"Jelinek"},{"first_name":"Grzegorz","full_name":"Kamieniarz, Grzegorz","last_name":"Kamieniarz"},{"first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail","last_name":"Lemeshko","orcid":"0000-0002-6990-7802"},{"first_name":"Karen","full_name":"Michaeli, Karen","last_name":"Michaeli"},{"first_name":"Vladimiro","full_name":"Mujica, Vladimiro","last_name":"Mujica"},{"first_name":"Ron","last_name":"Naaman","full_name":"Naaman, Ron"},{"last_name":"Paltiel","full_name":"Paltiel, Yossi","first_name":"Yossi"},{"first_name":"Sivan","last_name":"Refaely-Abramson","full_name":"Refaely-Abramson, Sivan"},{"first_name":"Oren","last_name":"Tal","full_name":"Tal, Oren"},{"last_name":"Thijssen","full_name":"Thijssen, Jos","first_name":"Jos"},{"last_name":"Thoss","full_name":"Thoss, Michael","first_name":"Michael"},{"last_name":"Van Ruitenbeek","full_name":"Van Ruitenbeek, Jan M.","first_name":"Jan M."},{"first_name":"Latha","full_name":"Venkataraman, Latha","last_name":"Venkataraman"},{"first_name":"David H.","full_name":"Waldeck, David H.","last_name":"Waldeck"},{"first_name":"Binghai","last_name":"Yan","full_name":"Yan, Binghai"},{"first_name":"Leeor","full_name":"Kronik, Leeor","last_name":"Kronik"}],"title":"Theory of chirality induced spin selectivity: Progress and challenges","article_type":"review","year":"2022","publication_identifier":{"issn":["0935-9648"],"eissn":["1521-4095"]},"article_number":"2106629","intvolume":"        34","date_published":"2022-04-01T00:00:00Z","doi":"10.1002/adma.202106629","day":"01","oa":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","publication":"Advanced Materials","arxiv":1,"isi":1,"external_id":{"arxiv":["2108.09998"],"isi":["000753795900001"],"pmid":["35064943"]},"date_created":"2022-02-20T23:01:33Z","publication_status":"published","scopus_import":"1","issue":"13","month":"04","_id":"10771","quality_controlled":"1","abstract":[{"text":"A critical overview of the theory of the chirality-induced spin selectivity (CISS) effect, that is, phenomena in which the chirality of molecular species imparts significant spin selectivity to various electron processes, is provided. Based on discussions in a recently held workshop, and further work published since, the status of CISS effects—in electron transmission, electron transport, and chemical reactions—is reviewed. For each, a detailed discussion of the state-of-the-art in theoretical understanding is provided and remaining challenges and research opportunities are identified.","lang":"eng"}],"type":"journal_article","pmid":1,"citation":{"short":"F. Evers, A. Aharony, N. Bar-Gill, O. Entin-Wohlman, P. Hedegård, O. Hod, P. Jelinek, G. Kamieniarz, M. Lemeshko, K. Michaeli, V. Mujica, R. Naaman, Y. Paltiel, S. Refaely-Abramson, O. Tal, J. Thijssen, M. Thoss, J.M. Van Ruitenbeek, L. Venkataraman, D.H. Waldeck, B. Yan, L. Kronik, Advanced Materials 34 (2022).","mla":"Evers, Ferdinand, et al. “Theory of Chirality Induced Spin Selectivity: Progress and Challenges.” <i>Advanced Materials</i>, vol. 34, no. 13, 2106629, Wiley, 2022, doi:<a href=\"https://doi.org/10.1002/adma.202106629\">10.1002/adma.202106629</a>.","ista":"Evers F, Aharony A, Bar-Gill N, Entin-Wohlman O, Hedegård P, Hod O, Jelinek P, Kamieniarz G, Lemeshko M, Michaeli K, Mujica V, Naaman R, Paltiel Y, Refaely-Abramson S, Tal O, Thijssen J, Thoss M, Van Ruitenbeek JM, Venkataraman L, Waldeck DH, Yan B, Kronik L. 2022. Theory of chirality induced spin selectivity: Progress and challenges. Advanced Materials. 34(13), 2106629.","chicago":"Evers, Ferdinand, Amnon Aharony, Nir Bar-Gill, Ora Entin-Wohlman, Per Hedegård, Oded Hod, Pavel Jelinek, et al. “Theory of Chirality Induced Spin Selectivity: Progress and Challenges.” <i>Advanced Materials</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/adma.202106629\">https://doi.org/10.1002/adma.202106629</a>.","apa":"Evers, F., Aharony, A., Bar-Gill, N., Entin-Wohlman, O., Hedegård, P., Hod, O., … Kronik, L. (2022). Theory of chirality induced spin selectivity: Progress and challenges. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.202106629\">https://doi.org/10.1002/adma.202106629</a>","ama":"Evers F, Aharony A, Bar-Gill N, et al. Theory of chirality induced spin selectivity: Progress and challenges. <i>Advanced Materials</i>. 2022;34(13). doi:<a href=\"https://doi.org/10.1002/adma.202106629\">10.1002/adma.202106629</a>","ieee":"F. Evers <i>et al.</i>, “Theory of chirality induced spin selectivity: Progress and challenges,” <i>Advanced Materials</i>, vol. 34, no. 13. Wiley, 2022."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2108.09998"}],"publisher":"Wiley","department":[{"_id":"MiLe"}],"volume":34},{"year":"2022","day":"08","doi":"10.5281/ZENODO.5500360","type":"research_data_reference","abstract":[{"lang":"eng","text":"Detailed information about the data set see \"dataset description.txt\" file."}],"citation":{"short":"R. Hasler, C. Reiner-Rozman, S. Fossati, P. Aspermair, J. Dostalek, S. Lee, M. Ibáñez, J. Bintinger, W. Knoll, (2022).","mla":"Hasler, Roger, et al. <i>Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device</i>. Zenodo, 2022, doi:<a href=\"https://doi.org/10.5281/ZENODO.5500360\">10.5281/ZENODO.5500360</a>.","chicago":"Hasler, Roger, Ciril Reiner-Rozman, Stefan Fossati, Patrik Aspermair, Jakub Dostalek, Seungho Lee, Maria Ibáñez, Johannes Bintinger, and Wolfgang Knoll. “Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device.” Zenodo, 2022. <a href=\"https://doi.org/10.5281/ZENODO.5500360\">https://doi.org/10.5281/ZENODO.5500360</a>.","ista":"Hasler R, Reiner-Rozman C, Fossati S, Aspermair P, Dostalek J, Lee S, Ibáñez M, Bintinger J, Knoll W. 2022. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.5500360\">10.5281/ZENODO.5500360</a>.","ieee":"R. Hasler <i>et al.</i>, “Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device.” Zenodo, 2022.","apa":"Hasler, R., Reiner-Rozman, C., Fossati, S., Aspermair, P., Dostalek, J., Lee, S., … Knoll, W. (2022). Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.5500360\">https://doi.org/10.5281/ZENODO.5500360</a>","ama":"Hasler R, Reiner-Rozman C, Fossati S, et al. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. 2022. doi:<a href=\"https://doi.org/10.5281/ZENODO.5500360\">10.5281/ZENODO.5500360</a>"},"oa":1,"date_published":"2022-02-08T00:00:00Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","publisher":"Zenodo","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.5500360"}],"ddc":["540"],"department":[{"_id":"MaIb"}],"date_created":"2022-03-07T08:19:11Z","oa_version":"Published Version","month":"02","status":"public","article_processing_charge":"No","author":[{"first_name":"Roger","last_name":"Hasler","full_name":"Hasler, Roger"},{"last_name":"Reiner-Rozman","full_name":"Reiner-Rozman, Ciril","first_name":"Ciril"},{"first_name":"Stefan","last_name":"Fossati","full_name":"Fossati, Stefan"},{"full_name":"Aspermair, Patrik","last_name":"Aspermair","first_name":"Patrik"},{"first_name":"Jakub","full_name":"Dostalek, Jakub","last_name":"Dostalek"},{"full_name":"Lee, Seungho","last_name":"Lee","id":"BB243B88-D767-11E9-B658-BC13E6697425","orcid":"0000-0002-6962-8598","first_name":"Seungho"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","first_name":"Maria"},{"full_name":"Bintinger, Johannes","last_name":"Bintinger","first_name":"Johannes"},{"first_name":"Wolfgang","full_name":"Knoll, Wolfgang","last_name":"Knoll"}],"title":"Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device","date_updated":"2026-04-02T12:33:44Z","_id":"10833","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"10829"}]}},{"external_id":{"pmid":[" 35739187"],"isi":["000815098500002"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","date_created":"2022-07-10T22:01:52Z","month":"06","scopus_import":"1","issue":"1","_id":"11551","citation":{"short":"D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A. Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R. Martí, Communications Biology 5 (2022).","mla":"Molina-Granada, David, et al. “Most Mitochondrial DGTP Is Tightly Bound to Respiratory Complex I through the NDUFA10 Subunit.” <i>Communications Biology</i>, vol. 5, no. 1, 620, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s42003-022-03568-6\">10.1038/s42003-022-03568-6</a>.","chicago":"Molina-Granada, David, Emiliano González-Vioque, Marris G. Dibley, Raquel Cabrera-Pérez, Antoni Vallbona-Garcia, Javier Torres-Torronteras, Leonid A Sazanov, Michael T. Ryan, Yolanda Cámara, and Ramon Martí. “Most Mitochondrial DGTP Is Tightly Bound to Respiratory Complex I through the NDUFA10 Subunit.” <i>Communications Biology</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s42003-022-03568-6\">https://doi.org/10.1038/s42003-022-03568-6</a>.","ista":"Molina-Granada D, González-Vioque E, Dibley MG, Cabrera-Pérez R, Vallbona-Garcia A, Torres-Torronteras J, Sazanov LA, Ryan MT, Cámara Y, Martí R. 2022. Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit. Communications Biology. 5(1), 620.","ama":"Molina-Granada D, González-Vioque E, Dibley MG, et al. Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit. <i>Communications Biology</i>. 2022;5(1). doi:<a href=\"https://doi.org/10.1038/s42003-022-03568-6\">10.1038/s42003-022-03568-6</a>","apa":"Molina-Granada, D., González-Vioque, E., Dibley, M. G., Cabrera-Pérez, R., Vallbona-Garcia, A., Torres-Torronteras, J., … Martí, R. (2022). Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit. <i>Communications Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42003-022-03568-6\">https://doi.org/10.1038/s42003-022-03568-6</a>","ieee":"D. Molina-Granada <i>et al.</i>, “Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit,” <i>Communications Biology</i>, vol. 5, no. 1. Springer Nature, 2022."},"type":"journal_article","pmid":1,"abstract":[{"lang":"eng","text":"Imbalanced mitochondrial dNTP pools are known players in the pathogenesis of multiple human diseases. Here we show that, even under physiological conditions, dGTP is largely overrepresented among other dNTPs in mitochondria of mouse tissues and human cultured cells. In addition, a vast majority of mitochondrial dGTP is tightly bound to NDUFA10, an accessory subunit of complex I of the mitochondrial respiratory chain. NDUFA10 shares a deoxyribonucleoside kinase (dNK) domain with deoxyribonucleoside kinases in the nucleotide salvage pathway, though no specific function beyond stabilizing the complex I holoenzyme has been described for this subunit. We mutated the dNK domain of NDUFA10 in human HEK-293T cells while preserving complex I assembly and activity. The NDUFA10E160A/R161A shows reduced dGTP binding capacity in vitro and leads to a 50% reduction in mitochondrial dGTP content, proving that most dGTP is directly bound to the dNK domain of NDUFA10. This interaction may represent a hitherto unknown mechanism regulating mitochondrial dNTP availability and linking oxidative metabolism to DNA maintenance."}],"quality_controlled":"1","publisher":"Springer Nature","volume":5,"department":[{"_id":"LeSa"}],"oa_version":"Published Version","status":"public","language":[{"iso":"eng"}],"has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2022-07-13T07:44:58Z","author":[{"last_name":"Molina-Granada","full_name":"Molina-Granada, David","first_name":"David"},{"first_name":"Emiliano","full_name":"González-Vioque, Emiliano","last_name":"González-Vioque"},{"first_name":"Marris G.","last_name":"Dibley","full_name":"Dibley, Marris G."},{"full_name":"Cabrera-Pérez, Raquel","last_name":"Cabrera-Pérez","first_name":"Raquel"},{"last_name":"Vallbona-Garcia","full_name":"Vallbona-Garcia, Antoni","first_name":"Antoni"},{"first_name":"Javier","last_name":"Torres-Torronteras","full_name":"Torres-Torronteras, Javier"},{"full_name":"Sazanov, Leonid A","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","first_name":"Leonid A"},{"first_name":"Michael T.","last_name":"Ryan","full_name":"Ryan, Michael T."},{"first_name":"Yolanda","full_name":"Cámara, Yolanda","last_name":"Cámara"},{"first_name":"Ramon","last_name":"Martí","full_name":"Martí, Ramon"}],"title":"Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit","date_updated":"2026-04-02T13:22:53Z","article_number":"620","year":"2022","acknowledgement":"We thank Dr, Luke Formosa (Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Melbourne, Australia) for his valuable advice and assistance on NDUFA10 molecular studies and Dr. Francesc Canals and his team (Proteomics Laboratory, Vall d’Hebron Institute of Oncology [VHIO], Universitat Autònoma de Barcelona, Barcelona, Spain) for their assistance with LC-MS/MS analyses. This work was supported by the Spanish Ministry of Industry, Economy and Competitiveness [grants BFU2014-52618-R, SAF2017-87506, and PID2020-112929RB-I00 to Y.C.], by the Spanish Instituto de Salud Carlos III [grants PI21/00554 and PMP15/00025 to R.M.], co-financed by the European Regional Development Fund (ERDF), and by an NHMRC Project grant to M.R. (GNT1164459).\r\n","publication_identifier":{"eissn":["2399-3642"]},"file":[{"file_id":"11571","date_updated":"2022-07-13T07:44:58Z","relation":"main_file","content_type":"application/pdf","checksum":"965f88bbcef3fd0c3e121340555c4467","file_size":2335369,"creator":"kschuh","file_name":"2022_communicationsbiology_Molina-Granada.pdf","date_created":"2022-07-13T07:44:58Z","success":1,"access_level":"open_access"}],"oa":1,"doi":"10.1038/s42003-022-03568-6","day":"23","date_published":"2022-06-23T00:00:00Z","intvolume":"         5","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["570"],"isi":1,"publication":"Communications Biology"},{"quality_controlled":"1","citation":{"short":"K. Chatterjee, R. Ibsen-Jensen, I.R. Jecker, J. Svoboda, in:, 42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.","mla":"Chatterjee, Krishnendu, et al. “Complexity of Spatial Games.” <i>42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science</i>, vol. 250, 11:1-11:14, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022, doi:<a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2022.11\">10.4230/LIPIcs.FSTTCS.2022.11</a>.","ista":"Chatterjee K, Ibsen-Jensen R, Jecker IR, Svoboda J. 2022. Complexity of spatial games. 42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science. FSTTCS: Foundations of Software Technology and Theoretical Computer Science vol. 250, 11:1-11:14.","chicago":"Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, Ismael R Jecker, and Jakub Svoboda. “Complexity of Spatial Games.” In <i>42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science</i>, Vol. 250. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022. <a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2022.11\">https://doi.org/10.4230/LIPIcs.FSTTCS.2022.11</a>.","apa":"Chatterjee, K., Ibsen-Jensen, R., Jecker, I. R., &#38; Svoboda, J. (2022). Complexity of spatial games. In <i>42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science</i> (Vol. 250). Madras, India: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2022.11\">https://doi.org/10.4230/LIPIcs.FSTTCS.2022.11</a>","ama":"Chatterjee K, Ibsen-Jensen R, Jecker IR, Svoboda J. Complexity of spatial games. In: <i>42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science</i>. Vol 250. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2022. doi:<a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2022.11\">10.4230/LIPIcs.FSTTCS.2022.11</a>","ieee":"K. Chatterjee, R. Ibsen-Jensen, I. R. Jecker, and J. Svoboda, “Complexity of spatial games,” in <i>42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science</i>, Madras, India, 2022, vol. 250."},"type":"conference","abstract":[{"text":"Spatial games form a widely-studied class of games from biology and physics modeling the evolution of social behavior. Formally, such a game is defined by a square (d by d) payoff matrix M and an undirected graph G. Each vertex of G represents an individual, that initially follows some strategy i ∈ {1,2,…,d}. In each round of the game, every individual plays the matrix game with each of its neighbors: An individual following strategy i meeting a neighbor following strategy j receives a payoff equal to the entry (i,j) of M. Then, each individual updates its strategy to its neighbors' strategy with the highest sum of payoffs, and the next round starts. The basic computational problems consist of reachability between configurations and the average frequency of a strategy. For general spatial games and graphs, these problems are in PSPACE. In this paper, we examine restricted setting: the game is a prisoner’s dilemma; and G is a subgraph of grid. We prove that basic computational problems for spatial games with prisoner’s dilemma on a subgraph of a grid are PSPACE-hard.","lang":"eng"}],"department":[{"_id":"KrCh"}],"volume":250,"corr_author":"1","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","date_created":"2023-01-01T23:00:50Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","conference":{"name":"FSTTCS: Foundations of Software Technology and Theoretical Computer Science","location":"Madras, India","start_date":"2022-12-18","end_date":"2022-12-20"},"_id":"12101","scopus_import":"1","month":"12","date_published":"2022-12-14T00:00:00Z","intvolume":"       250","file":[{"file_size":657396,"creator":"dernst","success":1,"date_created":"2023-01-20T10:19:19Z","file_name":"2022_LIPICs_Chatterjee.pdf","access_level":"open_access","file_id":"12323","date_updated":"2023-01-20T10:19:19Z","relation":"main_file","content_type":"application/pdf","checksum":"a21e3ba2421e2c4a06aa2cb6d530ede1"}],"oa":1,"doi":"10.4230/LIPIcs.FSTTCS.2022.11","day":"14","acknowledgement":"Krishnendu Chatterjee: The research was partially supported by the ERC CoG 863818\r\n(ForM-SMArt).\r\nIsmaël Jecker: The research was partially supported by the ERC grant 950398 (INFSYS).\r\nJakub Svoboda: The research was partially supported by the ERC CoG 863818 (ForM-SMArt)","year":"2022","publication_identifier":{"issn":["1868-8969"],"isbn":["9783959772617"]},"ec_funded":1,"article_number":"11:1-11:14","publication":"42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science","ddc":["000"],"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818","call_identifier":"H2020"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","date_updated":"2026-04-07T11:49:11Z","related_material":{"record":[{"id":"20138","relation":"dissertation_contains","status":"public"}]},"author":[{"orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu"},{"first_name":"Rasmus","last_name":"Ibsen-Jensen","full_name":"Ibsen-Jensen, Rasmus","id":"3B699956-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4783-0389"},{"first_name":"Ismael R","last_name":"Jecker","full_name":"Jecker, Ismael R","id":"85D7C63E-7D5D-11E9-9C0F-98C4E5697425"},{"id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","last_name":"Svoboda","full_name":"Svoboda, Jakub","orcid":"0000-0002-1419-3267","first_name":"Jakub"}],"title":"Complexity of spatial games","has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2023-01-20T10:19:19Z","language":[{"iso":"eng"}],"status":"public"},{"_id":"12257","month":"09","issue":"3","scopus_import":"1","publication_status":"published","date_created":"2023-01-16T09:57:57Z","external_id":{"isi":["000870243100001"],"arxiv":["2210.02394"]},"volume":106,"department":[{"_id":"KrCh"}],"publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2210.02394"}],"citation":{"short":"K. Chatterjee, J. Svoboda, D. Zikelic, A. Pavlogiannis, J. Tkadlec, Physical Review E 106 (2022).","ista":"Chatterjee K, Svoboda J, Zikelic D, Pavlogiannis A, Tkadlec J. 2022. Social balance on networks: Local minima and best-edge dynamics. Physical Review E. 106(3), 034321.","chicago":"Chatterjee, Krishnendu, Jakub Svoboda, Dorde Zikelic, Andreas Pavlogiannis, and Josef Tkadlec. “Social Balance on Networks: Local Minima and Best-Edge Dynamics.” <i>Physical Review E</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/physreve.106.034321\">https://doi.org/10.1103/physreve.106.034321</a>.","mla":"Chatterjee, Krishnendu, et al. “Social Balance on Networks: Local Minima and Best-Edge Dynamics.” <i>Physical Review E</i>, vol. 106, no. 3, 034321, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/physreve.106.034321\">10.1103/physreve.106.034321</a>.","ieee":"K. Chatterjee, J. Svoboda, D. Zikelic, A. Pavlogiannis, and J. Tkadlec, “Social balance on networks: Local minima and best-edge dynamics,” <i>Physical Review E</i>, vol. 106, no. 3. American Physical Society, 2022.","apa":"Chatterjee, K., Svoboda, J., Zikelic, D., Pavlogiannis, A., &#38; Tkadlec, J. (2022). Social balance on networks: Local minima and best-edge dynamics. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physreve.106.034321\">https://doi.org/10.1103/physreve.106.034321</a>","ama":"Chatterjee K, Svoboda J, Zikelic D, Pavlogiannis A, Tkadlec J. Social balance on networks: Local minima and best-edge dynamics. <i>Physical Review E</i>. 2022;106(3). doi:<a href=\"https://doi.org/10.1103/physreve.106.034321\">10.1103/physreve.106.034321</a>"},"abstract":[{"lang":"eng","text":"Structural balance theory is an established framework for studying social relationships of friendship and enmity. These relationships are modeled by a signed network whose energy potential measures the level of imbalance, while stochastic dynamics drives the network toward a state of minimum energy that captures social balance. It is known that this energy landscape has local minima that can trap socially aware dynamics, preventing it from reaching balance. Here we first study the robustness and attractor properties of these local minima. We show that a stochastic process can reach them from an abundance of initial states and that some local minima cannot be escaped by mild perturbations of the network. Motivated by these anomalies, we introduce best-edge dynamics (BED), a new plausible stochastic process. We prove that BED always reaches balance and that it does so fast in various interesting settings."}],"type":"journal_article","quality_controlled":"1","author":[{"first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X"},{"orcid":"0000-0002-1419-3267","id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","last_name":"Svoboda","full_name":"Svoboda, Jakub","first_name":"Jakub"},{"first_name":"Dorde","orcid":"0000-0002-4681-1699","last_name":"Zikelic","full_name":"Zikelic, Dorde","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Pavlogiannis, Andreas","last_name":"Pavlogiannis","id":"49704004-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8943-0722","first_name":"Andreas"},{"first_name":"Josef","orcid":"0000-0002-1097-9684","last_name":"Tkadlec","full_name":"Tkadlec, Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"}],"title":"Social balance on networks: Local minima and best-edge dynamics","related_material":{"record":[{"status":"public","id":"20138","relation":"dissertation_contains"}]},"date_updated":"2026-04-07T11:49:11Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","oa_version":"Preprint","isi":1,"publication":"Physical Review E","arxiv":1,"project":[{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","call_identifier":"FP7"},{"call_identifier":"H2020","grant_number":"863818","name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"},{"call_identifier":"FWF","grant_number":"P 23499-N23","_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"call_identifier":"FWF","grant_number":"S11407","name":"Game Theory","_id":"25863FF4-B435-11E9-9278-68D0E5697425"},{"grant_number":"665385","name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"day":"29","doi":"10.1103/physreve.106.034321","date_published":"2022-09-29T00:00:00Z","intvolume":"       106","article_number":"034321","year":"2022","publication_identifier":{"issn":["2470-0045"],"eissn":["2470-0053"]},"article_type":"original","acknowledgement":"K.C. acknowledges support from ERC Start Grant No. (279307: Graph Games), ERC Consolidator Grant No. (863818: ForM-SMart), and Austrian Science Fund (FWF)\r\nGrants No. P23499-N23 and No. S11407-N23 (RiSE). This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie\r\nSkłodowska-Curie Grant Agreement No. 665385.","ec_funded":1}]