[{"oa":1,"publication_identifier":{"issn":["2663-337X"]},"file":[{"file_name":"Rzadkowski_thesis_final_source.zip","relation":"source_file","content_type":"application/zip","file_id":"10785","date_created":"2022-02-21T13:58:16Z","checksum":"0fc54ad1eaede879c665ac9b53c93e22","creator":"wrzadkow","access_level":"closed","file_size":17668233,"date_updated":"2022-02-22T07:20:12Z"},{"access_level":"open_access","date_updated":"2022-02-21T14:02:54Z","file_size":13307331,"content_type":"application/pdf","relation":"main_file","creator":"wrzadkow","checksum":"22d2d7af37ca31f6b1730c26cac7bced","date_created":"2022-02-21T14:02:54Z","success":1,"file_id":"10786","file_name":"Rzadkowski_thesis_final.pdf"}],"oa_version":"Published Version","department":[{"_id":"GradSch"},{"_id":"MiLe"}],"ddc":["530"],"date_published":"2022-02-21T00:00:00Z","corr_author":"1","citation":{"ama":"Rzadkowski W. Analytic and machine learning approaches to composite quantum impurities. 2022. doi:<a href=\"https://doi.org/10.15479/at:ista:10759\">10.15479/at:ista:10759</a>","short":"W. Rzadkowski, Analytic and Machine Learning Approaches to Composite Quantum Impurities, Institute of Science and Technology Austria, 2022.","ista":"Rzadkowski W. 2022. Analytic and machine learning approaches to composite quantum impurities. Institute of Science and Technology Austria.","chicago":"Rzadkowski, Wojciech. “Analytic and Machine Learning Approaches to Composite Quantum Impurities.” Institute of Science and Technology Austria, 2022. <a href=\"https://doi.org/10.15479/at:ista:10759\">https://doi.org/10.15479/at:ista:10759</a>.","ieee":"W. Rzadkowski, “Analytic and machine learning approaches to composite quantum impurities,” Institute of Science and Technology Austria, 2022.","mla":"Rzadkowski, Wojciech. <i>Analytic and Machine Learning Approaches to Composite Quantum Impurities</i>. Institute of Science and Technology Austria, 2022, doi:<a href=\"https://doi.org/10.15479/at:ista:10759\">10.15479/at:ista:10759</a>.","apa":"Rzadkowski, W. (2022). <i>Analytic and machine learning approaches to composite quantum impurities</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:10759\">https://doi.org/10.15479/at:ista:10759</a>"},"publisher":"Institute of Science and Technology Austria","has_accepted_license":"1","ec_funded":1,"article_processing_charge":"No","doi":"10.15479/at:ista:10759","publication_status":"published","date_created":"2022-02-16T13:27:37Z","language":[{"iso":"eng"}],"author":[{"full_name":"Rzadkowski, Wojciech","id":"48C55298-F248-11E8-B48F-1D18A9856A87","last_name":"Rzadkowski","orcid":"0000-0002-1106-4419","first_name":"Wojciech"}],"related_material":{"record":[{"id":"10762","relation":"part_of_dissertation","status":"public"},{"status":"public","id":"415","relation":"part_of_dissertation"},{"id":"8644","relation":"part_of_dissertation","status":"public"},{"id":"7956","relation":"part_of_dissertation","status":"public"}]},"supervisor":[{"first_name":"Mikhail","full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko"}],"OA_place":"publisher","date_updated":"2026-06-18T19:29:09Z","degree_awarded":"PhD","type":"dissertation","alternative_title":["ISTA Thesis"],"month":"02","_id":"10759","project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","name":"International IST Doctoral Program","call_identifier":"H2020"}],"abstract":[{"text":"In this Thesis, I study composite quantum impurities with variational techniques, both inspired by machine learning as well as fully analytic. I supplement this with exploration of other applications of machine learning, in particular artificial neural networks, in many-body physics. In Chapters 3 and 4, I study quasiparticle systems with variational approach. I derive a Hamiltonian describing the angulon quasiparticle in the presence of a magnetic field. I apply analytic variational treatment to this Hamiltonian. Then, I introduce a variational approach for non-additive systems, based on artificial neural networks. I exemplify this approach on the example of the polaron quasiparticle (Fröhlich Hamiltonian). In Chapter 5, I continue using artificial neural networks, albeit in a different setting. I apply artificial neural networks to detect phases from snapshots of two types physical systems. Namely, I study Monte Carlo snapshots of multilayer classical spin models as well as molecular dynamics maps of colloidal systems. The main type of networks that I use here are convolutional neural networks, known for their applicability to image data.","lang":"eng"}],"page":"120","file_date_updated":"2022-02-22T07:20:12Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","title":"Analytic and machine learning approaches to composite quantum impurities","status":"public","day":"21","year":"2022"},{"publisher":"Springer Nature","citation":{"apa":"Herguedas, B., Kohegyi, B. K., Dohrke, J. N., Watson, J., Zhang, D., Ho, H., … Greger, I. H. (2022). Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-28404-7\">https://doi.org/10.1038/s41467-022-28404-7</a>","mla":"Herguedas, Beatriz, et al. “Mechanisms Underlying TARP Modulation of the GluA1/2-Γ8 AMPA Receptor.” <i>Nature Communications</i>, vol. 13, 734, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-28404-7\">10.1038/s41467-022-28404-7</a>.","ieee":"B. Herguedas <i>et al.</i>, “Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.","chicago":"Herguedas, Beatriz, Bianka K. Kohegyi, Jan Niklas Dohrke, Jake Watson, Danyang Zhang, Hinze Ho, Saher A. Shaikh, Remigijus Lape, James M. Krieger, and Ingo H. Greger. “Mechanisms Underlying TARP Modulation of the GluA1/2-Γ8 AMPA Receptor.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-28404-7\">https://doi.org/10.1038/s41467-022-28404-7</a>.","ista":"Herguedas B, Kohegyi BK, Dohrke JN, Watson J, Zhang D, Ho H, Shaikh SA, Lape R, Krieger JM, Greger IH. 2022. Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor. Nature Communications. 13, 734.","short":"B. Herguedas, B.K. Kohegyi, J.N. Dohrke, J. Watson, D. Zhang, H. Ho, S.A. Shaikh, R. Lape, J.M. Krieger, I.H. Greger, Nature Communications 13 (2022).","ama":"Herguedas B, Kohegyi BK, Dohrke JN, et al. Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-28404-7\">10.1038/s41467-022-28404-7</a>"},"ddc":["570"],"date_published":"2022-02-08T00:00:00Z","publication_identifier":{"eissn":["2041-1723"]},"department":[{"_id":"PeJo"}],"file":[{"date_updated":"2022-02-21T07:59:32Z","file_size":2625540,"access_level":"open_access","success":1,"creator":"dernst","checksum":"d86ee8eabe8b794730729ffbb1a8832e","date_created":"2022-02-21T07:59:32Z","file_id":"10778","content_type":"application/pdf","relation":"main_file","file_name":"2022_NatureCommunications_Herguedas.pdf"}],"oa_version":"Published Version","oa":1,"language":[{"iso":"eng"}],"author":[{"first_name":"Beatriz","full_name":"Herguedas, Beatriz","last_name":"Herguedas"},{"first_name":"Bianka K.","full_name":"Kohegyi, Bianka K.","last_name":"Kohegyi"},{"last_name":"Dohrke","full_name":"Dohrke, Jan Niklas","first_name":"Jan Niklas"},{"first_name":"Jake","orcid":"0000-0002-8698-3823","id":"63836096-4690-11EA-BD4E-32803DDC885E","last_name":"Watson","full_name":"Watson, Jake"},{"first_name":"Danyang","full_name":"Zhang, Danyang","last_name":"Zhang"},{"first_name":"Hinze","last_name":"Ho","full_name":"Ho, Hinze"},{"first_name":"Saher A.","full_name":"Shaikh, Saher A.","last_name":"Shaikh"},{"full_name":"Lape, Remigijus","last_name":"Lape","first_name":"Remigijus"},{"last_name":"Krieger","full_name":"Krieger, James M.","first_name":"James M."},{"first_name":"Ingo H.","last_name":"Greger","full_name":"Greger, Ingo H."}],"pmid":1,"date_created":"2022-02-20T23:01:30Z","article_type":"original","publication_status":"published","intvolume":"        13","isi":1,"doi":"10.1038/s41467-022-28404-7","article_processing_charge":"No","has_accepted_license":"1","publication":"Nature Communications","_id":"10763","article_number":"734","type":"journal_article","month":"02","quality_controlled":"1","acknowledgement":"We thank Ondrej Cais for critical reading of the manuscript. We are grateful to LMB\r\nscientific computing and the EM facility for support, Paul Emsley for help with model\r\nbuilding and Takanori Nakane for helpful comments with Relion 3.1. This work was\r\nsupported by grants from the Medical Research Council (MC_U105174197) and BBSRC\r\n(BB/N002113/1) to I.H.G, and grants from the MCIN/AEI/ 10.13039/501100011033 and\r\n“ESF Investing in your future” to B.H (PID2019-106284GA-I00 and RYC2018-025720-I).","date_updated":"2026-04-02T12:14:43Z","volume":13,"status":"public","year":"2022","day":"08","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"scopus_import":"1","title":"Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","external_id":{"isi":["000757297200008"],"pmid":["35136046"]},"abstract":[{"text":"AMPA-type glutamate receptors (AMPARs) mediate rapid signal transmission at excitatory\r\nsynapses in the brain. Glutamate binding to the receptor’s ligand-binding domains (LBDs)\r\nleads to ion channel activation and desensitization. Gating kinetics shape synaptic transmission\r\nand are strongly modulated by transmembrane AMPAR regulatory proteins (TARPs)\r\nthrough currently incompletely resolved mechanisms. Here, electron cryo-microscopy\r\nstructures of the GluA1/2 TARP-γ8 complex, in both open and desensitized states\r\n(at 3.5 Å), reveal state-selective engagement of the LBDs by the large TARP-γ8 loop (‘β1’),\r\nelucidating how this TARP stabilizes specific gating states. We further show how TARPs alter\r\nchannel rectification, by interacting with the pore helix of the selectivity filter. Lastly, we\r\nreveal that the Q/R-editing site couples the channel constriction at the filter entrance to the\r\ngate, and forms the major cation binding site in the conduction path. Our results provide a\r\nmechanistic framework of how TARPs modulate AMPAR gating and conductance.","lang":"eng"}],"file_date_updated":"2022-02-21T07:59:32Z"},{"month":"02","type":"journal_article","article_number":"753","_id":"10764","volume":13,"date_updated":"2026-04-02T12:22:38Z","acknowledgement":"We thank D. Mazaud and. J. Cazères for technical assistance. This work was supported by grants from the European Research Council (Consolidator grant #683154) and European Union’s Horizon 2020 research and innovation program (Marie Sklodowska-Curie Innovative Training Networks, grant #722053, EU-GliaPhD) to N.R. and from FP7-PEOPLE Marie Curie Intra-European Fellowship for career development (grant #622289) to G.C.","quality_controlled":"1","external_id":{"isi":["000757297200017"],"pmid":["35136061"]},"title":"Physiological synaptic activity and recognition memory require astroglial glutamine","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","scopus_import":"1","year":"2022","day":"08","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","file_date_updated":"2022-02-21T07:51:33Z","abstract":[{"text":"Presynaptic glutamate replenishment is fundamental to brain function. In high activity regimes, such as epileptic episodes, this process is thought to rely on the glutamate-glutamine cycle between neurons and astrocytes. However the presence of an astroglial glutamine supply, as well as its functional relevance in vivo in the healthy brain remain controversial, partly due to a lack of tools that can directly examine glutamine transfer. Here, we generated a fluorescent probe that tracks glutamine in live cells, which provides direct visual evidence of an activity-dependent glutamine supply from astroglial networks to presynaptic structures under physiological conditions. This mobilization is mediated by connexin43, an astroglial protein with both gap-junction and hemichannel functions, and is essential for synaptic transmission and object recognition memory. Our findings uncover an indispensable recruitment of astroglial glutamine in physiological synaptic activity and memory via an unconventional pathway, thus providing an astrocyte basis for cognitive processes.","lang":"eng"}],"date_published":"2022-02-08T00:00:00Z","ddc":["570"],"publisher":"Springer Nature","citation":{"mla":"Cheung, Giselle T., et al. “Physiological Synaptic Activity and Recognition Memory Require Astroglial Glutamine.” <i>Nature Communications</i>, vol. 13, 753, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s41467-022-28331-7\">10.1038/s41467-022-28331-7</a>.","apa":"Cheung, G. T., Bataveljic, D., Visser, J., Kumar, N., Moulard, J., Dallérac, G., … Rouach, N. (2022). Physiological synaptic activity and recognition memory require astroglial glutamine. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-022-28331-7\">https://doi.org/10.1038/s41467-022-28331-7</a>","ieee":"G. T. Cheung <i>et al.</i>, “Physiological synaptic activity and recognition memory require astroglial glutamine,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.","ista":"Cheung GT, Bataveljic D, Visser J, Kumar N, Moulard J, Dallérac G, Mozheiko D, Rollenhagen A, Ezan P, Mongin C, Chever O, Bemelmans AP, Lübke J, Leray I, Rouach N. 2022. Physiological synaptic activity and recognition memory require astroglial glutamine. Nature Communications. 13, 753.","short":"G.T. Cheung, D. Bataveljic, J. Visser, N. Kumar, J. Moulard, G. Dallérac, D. Mozheiko, A. Rollenhagen, P. Ezan, C. Mongin, O. Chever, A.P. Bemelmans, J. Lübke, I. Leray, N. Rouach, Nature Communications 13 (2022).","chicago":"Cheung, Giselle T, Danijela Bataveljic, Josien Visser, Naresh Kumar, Julien Moulard, Glenn Dallérac, Daria Mozheiko, et al. “Physiological Synaptic Activity and Recognition Memory Require Astroglial Glutamine.” <i>Nature Communications</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41467-022-28331-7\">https://doi.org/10.1038/s41467-022-28331-7</a>.","ama":"Cheung GT, Bataveljic D, Visser J, et al. Physiological synaptic activity and recognition memory require astroglial glutamine. <i>Nature Communications</i>. 2022;13. doi:<a href=\"https://doi.org/10.1038/s41467-022-28331-7\">10.1038/s41467-022-28331-7</a>"},"oa":1,"oa_version":"Published Version","file":[{"relation":"main_file","content_type":"application/pdf","file_id":"10777","date_created":"2022-02-21T07:51:33Z","creator":"dernst","checksum":"51d580aff2327dd957946208a9749e1a","success":1,"file_name":"2022_NatureCommunications_Cheung.pdf","access_level":"open_access","file_size":7910519,"date_updated":"2022-02-21T07:51:33Z"}],"department":[{"_id":"SiHi"}],"publication_identifier":{"eissn":["2041-1723"]},"date_created":"2022-02-20T23:01:30Z","pmid":1,"author":[{"first_name":"Giselle T","id":"471195F6-F248-11E8-B48F-1D18A9856A87","last_name":"Cheung","orcid":"0000-0001-8457-2572","full_name":"Cheung, Giselle T"},{"full_name":"Bataveljic, Danijela","last_name":"Bataveljic","first_name":"Danijela"},{"last_name":"Visser","full_name":"Visser, Josien","first_name":"Josien"},{"full_name":"Kumar, Naresh","last_name":"Kumar","first_name":"Naresh"},{"first_name":"Julien","full_name":"Moulard, Julien","last_name":"Moulard"},{"first_name":"Glenn","full_name":"Dallérac, Glenn","last_name":"Dallérac"},{"full_name":"Mozheiko, Daria","last_name":"Mozheiko","first_name":"Daria"},{"full_name":"Rollenhagen, Astrid","last_name":"Rollenhagen","first_name":"Astrid"},{"first_name":"Pascal","last_name":"Ezan","full_name":"Ezan, Pascal"},{"first_name":"Cédric","full_name":"Mongin, Cédric","last_name":"Mongin"},{"first_name":"Oana","last_name":"Chever","full_name":"Chever, Oana"},{"full_name":"Bemelmans, Alexis Pierre","last_name":"Bemelmans","first_name":"Alexis Pierre"},{"last_name":"Lübke","full_name":"Lübke, Joachim","first_name":"Joachim"},{"first_name":"Isabelle","last_name":"Leray","full_name":"Leray, Isabelle"},{"first_name":"Nathalie","last_name":"Rouach","full_name":"Rouach, Nathalie"}],"language":[{"iso":"eng"}],"doi":"10.1038/s41467-022-28331-7","article_processing_charge":"No","has_accepted_license":"1","publication":"Nature Communications","intvolume":"        13","isi":1,"article_type":"original","publication_status":"published"},{"date_created":"2022-02-20T23:01:32Z","author":[{"full_name":"Hajny, Jakub","id":"4800CC20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2140-7195","last_name":"Hajny","first_name":"Jakub"},{"full_name":"Tan, Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0471-8285","last_name":"Tan","first_name":"Shutang"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","first_name":"Jiří"}],"language":[{"iso":"eng"}],"pmid":1,"article_processing_charge":"Yes (via OA deal)","doi":"10.1016/j.pbi.2022.102174","publication":"Current Opinion in Plant Biology","has_accepted_license":"1","article_type":"original","publication_status":"published","intvolume":"        65","isi":1,"date_published":"2022-02-01T00:00:00Z","ddc":["580"],"corr_author":"1","publisher":"Elsevier","citation":{"apa":"Hajny, J., Tan, S., &#38; Friml, J. (2022). Auxin canalization: From speculative models toward molecular players. <i>Current Opinion in Plant Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.pbi.2022.102174\">https://doi.org/10.1016/j.pbi.2022.102174</a>","mla":"Hajny, Jakub, et al. “Auxin Canalization: From Speculative Models toward Molecular Players.” <i>Current Opinion in Plant Biology</i>, vol. 65, no. 2, 102174, Elsevier, 2022, doi:<a href=\"https://doi.org/10.1016/j.pbi.2022.102174\">10.1016/j.pbi.2022.102174</a>.","ieee":"J. Hajny, S. Tan, and J. Friml, “Auxin canalization: From speculative models toward molecular players,” <i>Current Opinion in Plant Biology</i>, vol. 65, no. 2. Elsevier, 2022.","ista":"Hajny J, Tan S, Friml J. 2022. Auxin canalization: From speculative models toward molecular players. Current Opinion in Plant Biology. 65(2), 102174.","short":"J. Hajny, S. Tan, J. Friml, Current Opinion in Plant Biology 65 (2022).","chicago":"Hajny, Jakub, Shutang Tan, and Jiří Friml. “Auxin Canalization: From Speculative Models toward Molecular Players.” <i>Current Opinion in Plant Biology</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.pbi.2022.102174\">https://doi.org/10.1016/j.pbi.2022.102174</a>.","ama":"Hajny J, Tan S, Friml J. Auxin canalization: From speculative models toward molecular players. <i>Current Opinion in Plant Biology</i>. 2022;65(2). doi:<a href=\"https://doi.org/10.1016/j.pbi.2022.102174\">10.1016/j.pbi.2022.102174</a>"},"oa":1,"publication_identifier":{"issn":["1369-5266"]},"oa_version":"Published Version","file":[{"content_type":"application/pdf","relation":"main_file","creator":"dernst","date_created":"2022-03-10T13:34:09Z","checksum":"f1ee02b6fb4200934eeb31fa69120885","success":1,"file_id":"10844","file_name":"2022_CurrentOpPlantBiology_Hajny.pdf","access_level":"open_access","date_updated":"2022-03-10T13:34:09Z","file_size":820322}],"department":[{"_id":"JiFr"}],"scopus_import":"1","title":"Auxin canalization: From speculative models toward molecular players","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000758724700004"],"pmid":["35123880"]},"status":"public","year":"2022","day":"01","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"abstract":[{"text":"Among the most fascinated properties of the plant hormone auxin is its ability to promote formation of its own directional transport routes. These gradually narrowing auxin channels form from the auxin source toward the sink and involve coordinated, collective polarization of individual cells. Once established, the channels provide positional information, along which new vascular strands form, for example, during organogenesis, regeneration, or leave venation. The main prerequisite of this still mysterious auxin canalization mechanism is a feedback between auxin signaling and its directional transport. This is manifested by auxin-induced re-arrangements of polar, subcellular localization of PIN-FORMED (PIN) auxin exporters. Immanent open questions relate to how position of auxin source and sink as well as tissue context are sensed and translated into tissue polarization and how cells communicate to polarize coordinately. Recently, identification of the first molecular players opens new avenues into molecular studies of this intriguing example of self-organizing plant development.","lang":"eng"}],"file_date_updated":"2022-03-10T13:34:09Z","type":"journal_article","month":"02","issue":"2","_id":"10768","article_number":"102174","acknowledgement":"The authors apologize to those researchers whose work was not cited. In addition, exciting topics such as PIN polarization in context of phyllotaxis, shoot branching and termination of gravitropic bending, or role of additional auxin transporters could not have been included owing to lack of space. This work was supported by the Czech Science Foundation GAČR (GA18-26981S). The authors also acknowledge the EMBO for supporting J.H. with a long-term fellowship (ALTF217-2021).","date_updated":"2024-10-09T21:01:37Z","volume":65,"quality_controlled":"1"},{"file":[{"file_size":4505751,"date_updated":"2022-02-21T09:32:44Z","access_level":"open_access","file_id":"10782","creator":"dernst","checksum":"ca66a3017205677c5b4d22b3bb74fb0b","date_created":"2022-02-21T09:32:44Z","success":1,"relation":"main_file","content_type":"application/pdf","file_name":"2022_AnalesAFA_Daguerre.pdf"}],"oa_version":"Published Version","department":[{"_id":"MaSe"}],"OA_type":"gold","publication_identifier":{"eissn":["1850-1168"]},"oa":1,"DOAJ_listed":"1","citation":{"mla":"Daguerre, L., et al. “Non relativistic quantum field theory: Dynamics and irreversibility.” <i>Anales de la Asociacion Fisica Argentina</i>, vol. 32, no. 4, Asociación Física Argentina, 2022, pp. 93–98, doi:<a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">10.31527/analesafa.2021.32.4.93</a>.","apa":"Daguerre, L., Torroba, G., Medina Ramos, R. A., &#38; Solís, M. (2022). Non relativistic quantum field theory: Dynamics and irreversibility. <i>Anales de la Asociacion Fisica Argentina</i>. Asociación Física Argentina. <a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">https://doi.org/10.31527/analesafa.2021.32.4.93</a>","ieee":"L. Daguerre, G. Torroba, R. A. Medina Ramos, and M. Solís, “Non relativistic quantum field theory: Dynamics and irreversibility,” <i>Anales de la Asociacion Fisica Argentina</i>, vol. 32, no. 4. Asociación Física Argentina, pp. 93–98, 2022.","ista":"Daguerre L, Torroba G, Medina Ramos RA, Solís M. 2022. Non relativistic quantum field theory: Dynamics and irreversibility. Anales de la Asociacion Fisica Argentina. 32(4), 93–98.","chicago":"Daguerre, L., G. Torroba, Raimel A Medina Ramos, and M. Solís. “Non relativistic quantum field theory: Dynamics and irreversibility.” <i>Anales de la Asociacion Fisica Argentina</i>. Asociación Física Argentina, 2022. <a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">https://doi.org/10.31527/analesafa.2021.32.4.93</a>.","short":"L. Daguerre, G. Torroba, R.A. Medina Ramos, M. Solís, Anales de la Asociacion Fisica Argentina 32 (2022) 93–98.","ama":"Daguerre L, Torroba G, Medina Ramos RA, Solís M. Non relativistic quantum field theory: Dynamics and irreversibility. <i>Anales de la Asociacion Fisica Argentina</i>. 2022;32(4):93-98. doi:<a href=\"https://doi.org/10.31527/analesafa.2021.32.4.93\">10.31527/analesafa.2021.32.4.93</a>"},"publisher":"Asociación Física Argentina","ddc":["530"],"date_published":"2022-01-13T00:00:00Z","intvolume":"        32","publication_status":"published","article_type":"original","has_accepted_license":"1","publication":"Anales de la Asociacion Fisica Argentina","article_processing_charge":"No","doi":"10.31527/analesafa.2021.32.4.93","language":[{"iso":"spa"}],"author":[{"first_name":"L.","full_name":"Daguerre, L.","last_name":"Daguerre"},{"first_name":"G.","last_name":"Torroba","full_name":"Torroba, G."},{"first_name":"Raimel A","orcid":"0000-0002-5383-2869","last_name":"Medina Ramos","id":"CE680B90-D85A-11E9-B684-C920E6697425","full_name":"Medina Ramos, Raimel A"},{"full_name":"Solís, M.","last_name":"Solís","first_name":"M."}],"date_created":"2022-02-20T23:01:32Z","quality_controlled":"1","date_updated":"2026-04-02T12:30:12Z","volume":32,"acknowledgement":"Se agradece a Horacio Casini por distintas discusiones y comentarios a lo largo del trabajo. LD cuenta con el apoyo de CNEA y UNCuyo, Inst. GT cuenta con el apoyo de CONICET,\r\nANPCyT, CNEA, y UNCuyo, Inst. Balseiro. RM cuenta con el apoyo de IST Austria. MS cuenta con el apoyode CONICET y UNCuyo, Inst. Balseiro. También se agradece a la Asociación Argentina de Física por la posibilidad de presentar este artículo en el marco de una Mención Especial por el Premio Luis Másperi 2020.","OA_place":"publisher","_id":"10769","issue":"4","month":"01","type":"journal_article","file_date_updated":"2022-02-21T09:32:44Z","page":"93-98","abstract":[{"lang":"eng","text":"studiamos aspectos de Teoría Cuántica de Campos a densidad finita usando técnicas y conceptos de información cuántica. Nos enfocamos en fermiones de Dirac masivos con potencial químico en 1+1 dimensiones espacio-temporales. Usando la entropía de entrelazamiento en un intervalo, construimos la función c entrópica que es finita. Esta función c no es monótona, e incorpora el entrelazamiento de largo alcance proveniente de la superficie de Fermi. Motivados por trabajos previos de modelos en la red, calculamos numéricamente las entropías de Renyi y encontramos oscilaciones de Friedel. Seguidamente, analizamos la información mutua como una medida de correlación entre diferentes regiones. Usando una expansión de distancia grande desarrollada por Cardy, argumentamos que la información mutua detecta las correlaciones inducidas por la superficie de Fermi todavía al orden dominante en la expansión. Finalmente, analizamos la entropía relativa y sus generalizaciones de Renyi para distinguir estados con diferente carga. Encontramos que estados en diferentes sectores de superselección dan origen a un comportamiento super-extensivo en la entropía relativa."}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"13","year":"2022","status":"public","title":"Non relativistic quantum field theory: Dynamics and irreversibility","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","scopus_import":"1"},{"quality_controlled":"1","volume":34,"date_updated":"2026-04-02T12:45:15Z","_id":"10771","article_number":"2106629","type":"journal_article","issue":"13","month":"04","abstract":[{"lang":"eng","text":"A critical overview of the theory of the chirality-induced spin selectivity (CISS) effect, that is, phenomena in which the chirality of molecular species imparts significant spin selectivity to various electron processes, is provided. Based on discussions in a recently held workshop, and further work published since, the status of CISS effects—in electron transmission, electron transport, and chemical reactions—is reviewed. For each, a detailed discussion of the state-of-the-art in theoretical understanding is provided and remaining challenges and research opportunities are identified."}],"status":"public","day":"01","year":"2022","scopus_import":"1","arxiv":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","title":"Theory of chirality induced spin selectivity: Progress and challenges","external_id":{"arxiv":["2108.09998"],"isi":["000753795900001"],"pmid":["35064943"]},"publication_identifier":{"issn":["0935-9648"],"eissn":["1521-4095"]},"oa_version":"Preprint","department":[{"_id":"MiLe"}],"oa":1,"citation":{"ista":"Evers F, Aharony A, Bar-Gill N, Entin-Wohlman O, Hedegård P, Hod O, Jelinek P, Kamieniarz G, Lemeshko M, Michaeli K, Mujica V, Naaman R, Paltiel Y, Refaely-Abramson S, Tal O, Thijssen J, Thoss M, Van Ruitenbeek JM, Venkataraman L, Waldeck DH, Yan B, Kronik L. 2022. Theory of chirality induced spin selectivity: Progress and challenges. Advanced Materials. 34(13), 2106629.","chicago":"Evers, Ferdinand, Amnon Aharony, Nir Bar-Gill, Ora Entin-Wohlman, Per Hedegård, Oded Hod, Pavel Jelinek, et al. “Theory of Chirality Induced Spin Selectivity: Progress and Challenges.” <i>Advanced Materials</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/adma.202106629\">https://doi.org/10.1002/adma.202106629</a>.","short":"F. Evers, A. Aharony, N. Bar-Gill, O. Entin-Wohlman, P. Hedegård, O. Hod, P. Jelinek, G. Kamieniarz, M. Lemeshko, K. Michaeli, V. Mujica, R. Naaman, Y. Paltiel, S. Refaely-Abramson, O. Tal, J. Thijssen, M. Thoss, J.M. Van Ruitenbeek, L. Venkataraman, D.H. Waldeck, B. Yan, L. Kronik, Advanced Materials 34 (2022).","ama":"Evers F, Aharony A, Bar-Gill N, et al. Theory of chirality induced spin selectivity: Progress and challenges. <i>Advanced Materials</i>. 2022;34(13). doi:<a href=\"https://doi.org/10.1002/adma.202106629\">10.1002/adma.202106629</a>","apa":"Evers, F., Aharony, A., Bar-Gill, N., Entin-Wohlman, O., Hedegård, P., Hod, O., … Kronik, L. (2022). Theory of chirality induced spin selectivity: Progress and challenges. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.202106629\">https://doi.org/10.1002/adma.202106629</a>","mla":"Evers, Ferdinand, et al. “Theory of Chirality Induced Spin Selectivity: Progress and Challenges.” <i>Advanced Materials</i>, vol. 34, no. 13, 2106629, Wiley, 2022, doi:<a href=\"https://doi.org/10.1002/adma.202106629\">10.1002/adma.202106629</a>.","ieee":"F. Evers <i>et al.</i>, “Theory of chirality induced spin selectivity: Progress and challenges,” <i>Advanced Materials</i>, vol. 34, no. 13. Wiley, 2022."},"publisher":"Wiley","date_published":"2022-04-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2108.09998"}],"publication_status":"published","article_type":"review","intvolume":"        34","isi":1,"publication":"Advanced Materials","article_processing_charge":"No","doi":"10.1002/adma.202106629","language":[{"iso":"eng"}],"author":[{"first_name":"Ferdinand","last_name":"Evers","full_name":"Evers, Ferdinand"},{"last_name":"Aharony","full_name":"Aharony, Amnon","first_name":"Amnon"},{"first_name":"Nir","last_name":"Bar-Gill","full_name":"Bar-Gill, Nir"},{"last_name":"Entin-Wohlman","full_name":"Entin-Wohlman, Ora","first_name":"Ora"},{"last_name":"Hedegård","full_name":"Hedegård, Per","first_name":"Per"},{"last_name":"Hod","full_name":"Hod, Oded","first_name":"Oded"},{"first_name":"Pavel","full_name":"Jelinek, Pavel","last_name":"Jelinek"},{"last_name":"Kamieniarz","full_name":"Kamieniarz, Grzegorz","first_name":"Grzegorz"},{"last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","first_name":"Mikhail"},{"first_name":"Karen","last_name":"Michaeli","full_name":"Michaeli, Karen"},{"first_name":"Vladimiro","last_name":"Mujica","full_name":"Mujica, Vladimiro"},{"first_name":"Ron","last_name":"Naaman","full_name":"Naaman, Ron"},{"first_name":"Yossi","full_name":"Paltiel, Yossi","last_name":"Paltiel"},{"last_name":"Refaely-Abramson","full_name":"Refaely-Abramson, Sivan","first_name":"Sivan"},{"first_name":"Oren","full_name":"Tal, Oren","last_name":"Tal"},{"first_name":"Jos","full_name":"Thijssen, Jos","last_name":"Thijssen"},{"first_name":"Michael","last_name":"Thoss","full_name":"Thoss, Michael"},{"last_name":"Van Ruitenbeek","full_name":"Van Ruitenbeek, Jan M.","first_name":"Jan M."},{"first_name":"Latha","full_name":"Venkataraman, Latha","last_name":"Venkataraman"},{"last_name":"Waldeck","full_name":"Waldeck, David H.","first_name":"David H."},{"first_name":"Binghai","last_name":"Yan","full_name":"Yan, Binghai"},{"first_name":"Leeor","full_name":"Kronik, Leeor","last_name":"Kronik"}],"pmid":1,"date_created":"2022-02-20T23:01:33Z"},{"year":"2022","day":"05","tmp":{"short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","arxiv":1,"title":"Mirror symmetry for the Tate curve via tropical and log corals","external_id":{"arxiv":["1712.10260"],"isi":["000751600600001"]},"scopus_import":"1","page":"343-411","file_date_updated":"2022-02-21T11:22:58Z","abstract":[{"lang":"eng","text":"We introduce tropical corals, balanced trees in a half-space, and show that they correspond to holomorphic polygons capturing the product rule in Lagrangian Floer theory for the elliptic curve. We then prove a correspondence theorem equating counts of tropical corals to punctured log Gromov–Witten invariants of the Tate curve. This implies that the homogeneous coordinate ring of the mirror to the Tate curve is isomorphic to the degree-zero part of symplectic cohomology, confirming a prediction of homological mirror symmetry."}],"_id":"10772","month":"02","issue":"1","type":"journal_article","quality_controlled":"1","volume":105,"date_updated":"2024-10-09T21:01:37Z","acknowledgement":"This paper is based on my PhD thesis, which would not be possible without the support of my advisor Bernd Siebert. I also thank Dan Abramovich, Mohammed Abouzaid, Mark Gross, Tom Coates and Dimitri Zvonkine for many useful conversations. Finally, I thank the anonymous referees for their many insightful comments and valuable suggestions which have resulted in major improvements to this article. This project has received funding from the EuropeanResearch Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement Number: 682603), and from Fondation Mathématique Jacques Hadamard. ","language":[{"iso":"eng"}],"author":[{"first_name":"Nuroemuer Huelya","id":"3c26b22e-c843-11eb-aa56-d38ffa0bdd08","last_name":"Arguez","full_name":"Arguez, Nuroemuer Huelya"}],"date_created":"2022-02-20T23:01:33Z","isi":1,"intvolume":"       105","article_type":"original","publication_status":"published","article_processing_charge":"Yes (via OA deal)","doi":"10.1112/jlms.12515","has_accepted_license":"1","publication":"Journal of the London Mathematical Society","publisher":"London Mathematical Society","citation":{"ieee":"N. H. Arguez, “Mirror symmetry for the Tate curve via tropical and log corals,” <i>Journal of the London Mathematical Society</i>, vol. 105, no. 1. London Mathematical Society, pp. 343–411, 2022.","apa":"Arguez, N. H. (2022). Mirror symmetry for the Tate curve via tropical and log corals. <i>Journal of the London Mathematical Society</i>. London Mathematical Society. <a href=\"https://doi.org/10.1112/jlms.12515\">https://doi.org/10.1112/jlms.12515</a>","mla":"Arguez, Nuroemuer Huelya. “Mirror Symmetry for the Tate Curve via Tropical and Log Corals.” <i>Journal of the London Mathematical Society</i>, vol. 105, no. 1, London Mathematical Society, 2022, pp. 343–411, doi:<a href=\"https://doi.org/10.1112/jlms.12515\">10.1112/jlms.12515</a>.","ama":"Arguez NH. Mirror symmetry for the Tate curve via tropical and log corals. <i>Journal of the London Mathematical Society</i>. 2022;105(1):343-411. doi:<a href=\"https://doi.org/10.1112/jlms.12515\">10.1112/jlms.12515</a>","chicago":"Arguez, Nuroemuer Huelya. “Mirror Symmetry for the Tate Curve via Tropical and Log Corals.” <i>Journal of the London Mathematical Society</i>. London Mathematical Society, 2022. <a href=\"https://doi.org/10.1112/jlms.12515\">https://doi.org/10.1112/jlms.12515</a>.","short":"N.H. Arguez, Journal of the London Mathematical Society 105 (2022) 343–411.","ista":"Arguez NH. 2022. Mirror symmetry for the Tate curve via tropical and log corals. Journal of the London Mathematical Society. 105(1), 343–411."},"corr_author":"1","date_published":"2022-02-05T00:00:00Z","ddc":["510"],"file":[{"date_updated":"2022-02-21T11:22:58Z","file_size":936873,"access_level":"open_access","success":1,"checksum":"8bd0fd9694be894a191857ddf27678f0","creator":"dernst","date_created":"2022-02-21T11:22:58Z","file_id":"10783","content_type":"application/pdf","relation":"main_file","file_name":"2022_JournLondonMathSociety_Arguez.pdf"}],"department":[{"_id":"TaHa"}],"oa_version":"Published Version","publication_identifier":{"eissn":["1469-7750"],"issn":["0024-6107"]},"oa":1},{"date_created":"2022-02-20T23:01:34Z","language":[{"iso":"eng"}],"author":[{"full_name":"Biswas, Ranita","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","last_name":"Biswas","orcid":"0000-0002-5372-7890","first_name":"Ranita"},{"first_name":"Sebastiano","full_name":"Cultrera Di Montesano, Sebastiano","orcid":"0000-0001-6249-0832","id":"34D2A09C-F248-11E8-B48F-1D18A9856A87","last_name":"Cultrera Di Montesano"},{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","first_name":"Herbert"},{"last_name":"Saghafian","full_name":"Saghafian, Morteza","first_name":"Morteza"}],"publication":"Discrete and Computational Geometry","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","doi":"10.1007/s00454-022-00371-2","publication_status":"published","article_type":"original","isi":1,"intvolume":"        67","date_published":"2022-04-01T00:00:00Z","ddc":["510"],"corr_author":"1","citation":{"chicago":"Biswas, Ranita, Sebastiano Cultrera di Montesano, Herbert Edelsbrunner, and Morteza Saghafian. “Continuous and Discrete Radius Functions on Voronoi Tessellations and Delaunay Mosaics.” <i>Discrete and Computational Geometry</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00454-022-00371-2\">https://doi.org/10.1007/s00454-022-00371-2</a>.","short":"R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Discrete and Computational Geometry 67 (2022) 811–842.","ista":"Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. 2022. Continuous and discrete radius functions on Voronoi tessellations and Delaunay mosaics. Discrete and Computational Geometry. 67, 811–842.","ama":"Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. Continuous and discrete radius functions on Voronoi tessellations and Delaunay mosaics. <i>Discrete and Computational Geometry</i>. 2022;67:811-842. doi:<a href=\"https://doi.org/10.1007/s00454-022-00371-2\">10.1007/s00454-022-00371-2</a>","mla":"Biswas, Ranita, et al. “Continuous and Discrete Radius Functions on Voronoi Tessellations and Delaunay Mosaics.” <i>Discrete and Computational Geometry</i>, vol. 67, Springer Nature, 2022, pp. 811–42, doi:<a href=\"https://doi.org/10.1007/s00454-022-00371-2\">10.1007/s00454-022-00371-2</a>.","apa":"Biswas, R., Cultrera di Montesano, S., Edelsbrunner, H., &#38; Saghafian, M. (2022). Continuous and discrete radius functions on Voronoi tessellations and Delaunay mosaics. <i>Discrete and Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-022-00371-2\">https://doi.org/10.1007/s00454-022-00371-2</a>","ieee":"R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, and M. Saghafian, “Continuous and discrete radius functions on Voronoi tessellations and Delaunay mosaics,” <i>Discrete and Computational Geometry</i>, vol. 67. Springer Nature, pp. 811–842, 2022."},"publisher":"Springer Nature","oa":1,"publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"department":[{"_id":"HeEd"}],"file":[{"file_name":"2022_DiscreteCompGeometry_Biswas.pdf","success":1,"checksum":"9383d3b70561bacee905e335dc922680","date_created":"2022-08-02T06:07:55Z","creator":"dernst","file_id":"11718","content_type":"application/pdf","relation":"main_file","date_updated":"2022-08-02T06:07:55Z","file_size":2518111,"access_level":"open_access"}],"oa_version":"Published Version","scopus_import":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","title":"Continuous and discrete radius functions on Voronoi tessellations and Delaunay mosaics","external_id":{"isi":["000752175300002"]},"status":"public","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"01","year":"2022","abstract":[{"lang":"eng","text":"The Voronoi tessellation in Rd is defined by locally minimizing the power distance to given weighted points. Symmetrically, the Delaunay mosaic can be defined by locally maximizing the negative power distance to other such points. We prove that the average of the two piecewise quadratic functions is piecewise linear, and that all three functions have the same critical points and values. Discretizing the two piecewise quadratic functions, we get the alpha shapes as sublevel sets of the discrete function on the Delaunay mosaic, and analogous shapes as superlevel sets of the discrete function on the Voronoi tessellation. For the same non-critical value, the corresponding shapes are disjoint, separated by a narrow channel that contains no critical points but the entire level set of the piecewise linear function."}],"page":"811-842","file_date_updated":"2022-08-02T06:07:55Z","type":"journal_article","month":"04","_id":"10773","acknowledgement":"Open access funding provided by the Institute of Science and Technology (IST Austria).","date_updated":"2024-10-09T21:01:38Z","volume":67,"quality_controlled":"1"},{"_id":"10774","type":"conference","alternative_title":["LNCS"],"month":"01","quality_controlled":"1","acknowledgement":"This work was funded in part by the Wittgenstein Award Z211-N23 of the Austrian Science Fund (FWF) and by the FWF project W1255-N23.","date_updated":"2026-04-16T09:13:43Z","volume":13182,"status":"public","day":"14","year":"2022","scopus_import":"1","external_id":{"isi":["001059208500001"],"arxiv":["2105.02013"]},"arxiv":1,"title":"Flavors of sequential information flow","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","project":[{"_id":"25F42A32-B435-11E9-9278-68D0E5697425","grant_number":"Z211","name":"Formal methods for the design and analysis of complex systems","call_identifier":"FWF"}],"abstract":[{"lang":"eng","text":"We study the problem of specifying sequential information-flow properties of systems. Information-flow properties are hyperproperties, as they compare different traces of a system. Sequential information-flow properties can express changes, over time, in the information-flow constraints. For example, information-flow constraints during an initialization phase of a system may be different from information-flow constraints that are required during the operation phase. We formalize several variants of interpreting sequential information-flow constraints, which arise from different assumptions about what can be observed of the system. For this purpose, we introduce a first-order logic, called Hypertrace Logic, with both trace and time quantifiers for specifying linear-time hyperproperties. We prove that HyperLTL, which corresponds to a fragment of Hypertrace Logic with restricted quantifier prefixes, cannot specify the majority of the studied variants of sequential information flow, including all variants in which the transition between sequential phases (such as initialization and operation) happens asynchronously. Our results rely on new equivalences between sets of traces that cannot be distinguished by certain classes of formulas from Hypertrace Logic. This presents a new approach to proving inexpressiveness results for HyperLTL."}],"page":"1-19","citation":{"apa":"Bartocci, E., Ferrere, T., Henzinger, T. A., Nickovic, D., &#38; Da Costa, A. O. (2022). Flavors of sequential information flow. In <i>Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i> (Vol. 13182, pp. 1–19). Philadelphia, PA, United States: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-94583-1_1\">https://doi.org/10.1007/978-3-030-94583-1_1</a>","mla":"Bartocci, Ezio, et al. “Flavors of Sequential Information Flow.” <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>, vol. 13182, Springer Nature, 2022, pp. 1–19, doi:<a href=\"https://doi.org/10.1007/978-3-030-94583-1_1\">10.1007/978-3-030-94583-1_1</a>.","ieee":"E. Bartocci, T. Ferrere, T. A. Henzinger, D. Nickovic, and A. O. Da Costa, “Flavors of sequential information flow,” in <i>Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>, Philadelphia, PA, United States, 2022, vol. 13182, pp. 1–19.","ista":"Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. 2022. Flavors of sequential information flow. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). VMCAI: Verifcation, Model Checking, and Abstract Interpretation, LNCS, vol. 13182, 1–19.","chicago":"Bartocci, Ezio, Thomas Ferrere, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira Da Costa. “Flavors of Sequential Information Flow.” In <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>, 13182:1–19. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/978-3-030-94583-1_1\">https://doi.org/10.1007/978-3-030-94583-1_1</a>.","short":"E. Bartocci, T. Ferrere, T.A. Henzinger, D. Nickovic, A.O. Da Costa, in:, Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer Nature, 2022, pp. 1–19.","ama":"Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. Flavors of sequential information flow. In: <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>. Vol 13182. Springer Nature; 2022:1-19. doi:<a href=\"https://doi.org/10.1007/978-3-030-94583-1_1\">10.1007/978-3-030-94583-1_1</a>"},"publisher":"Springer Nature","date_published":"2022-01-14T00:00:00Z","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2105.02013","open_access":"1"}],"publication_identifier":{"eissn":["1611-3349"],"eisbn":["9783030945831"],"issn":["0302-9743"],"isbn":["9783030945824"]},"conference":{"location":"Philadelphia, PA, United States","start_date":"2022-01-16","end_date":"2022-01-18","name":"VMCAI: Verifcation, Model Checking, and Abstract Interpretation"},"department":[{"_id":"ToHe"}],"oa_version":"Preprint","oa":1,"language":[{"iso":"eng"}],"author":[{"full_name":"Bartocci, Ezio","last_name":"Bartocci","first_name":"Ezio"},{"full_name":"Ferrere, Thomas","id":"40960E6E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5199-3143","last_name":"Ferrere","first_name":"Thomas"},{"first_name":"Thomas A","last_name":"Henzinger","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A"},{"id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","last_name":"Nickovic","full_name":"Nickovic, Dejan","first_name":"Dejan"},{"full_name":"Da Costa, Ana Oliveira","last_name":"Da Costa","first_name":"Ana Oliveira"}],"date_created":"2022-02-20T23:01:34Z","publication_status":"published","isi":1,"intvolume":"     13182","publication":"Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)","article_processing_charge":"No","doi":"10.1007/978-3-030-94583-1_1"},{"date_created":"2022-02-20T23:01:34Z","related_material":{"record":[{"id":"11145","relation":"earlier_version","status":"public"}]},"author":[{"first_name":"Asaf","last_name":"Ferber","full_name":"Ferber, Asaf"},{"first_name":"Matthew Alan","full_name":"Kwan, Matthew Alan","orcid":"0000-0002-4003-7567","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","last_name":"Kwan"},{"full_name":"Sauermann, Lisa","last_name":"Sauermann","first_name":"Lisa"}],"language":[{"iso":"eng"}],"publication":"IEEE Transactions on Information Theory","doi":"10.1109/TIT.2022.3148779","article_processing_charge":"No","intvolume":"        68","isi":1,"publication_status":"published","article_type":"original","main_file_link":[{"url":"https://arxiv.org/abs/2012.10584","open_access":"1"}],"date_published":"2022-06-01T00:00:00Z","citation":{"chicago":"Ferber, Asaf, Matthew Alan Kwan, and Lisa Sauermann. “List-Decodability with Large Radius for Reed-Solomon Codes.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2022. <a href=\"https://doi.org/10.1109/TIT.2022.3148779\">https://doi.org/10.1109/TIT.2022.3148779</a>.","short":"A. Ferber, M.A. Kwan, L. Sauermann, IEEE Transactions on Information Theory 68 (2022) 3823–3828.","ista":"Ferber A, Kwan MA, Sauermann L. 2022. List-decodability with large radius for Reed-Solomon codes. IEEE Transactions on Information Theory. 68(6), 3823–3828.","ama":"Ferber A, Kwan MA, Sauermann L. List-decodability with large radius for Reed-Solomon codes. <i>IEEE Transactions on Information Theory</i>. 2022;68(6):3823-3828. doi:<a href=\"https://doi.org/10.1109/TIT.2022.3148779\">10.1109/TIT.2022.3148779</a>","mla":"Ferber, Asaf, et al. “List-Decodability with Large Radius for Reed-Solomon Codes.” <i>IEEE Transactions on Information Theory</i>, vol. 68, no. 6, IEEE, 2022, pp. 3823–28, doi:<a href=\"https://doi.org/10.1109/TIT.2022.3148779\">10.1109/TIT.2022.3148779</a>.","apa":"Ferber, A., Kwan, M. A., &#38; Sauermann, L. (2022). List-decodability with large radius for Reed-Solomon codes. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2022.3148779\">https://doi.org/10.1109/TIT.2022.3148779</a>","ieee":"A. Ferber, M. A. Kwan, and L. Sauermann, “List-decodability with large radius for Reed-Solomon codes,” <i>IEEE Transactions on Information Theory</i>, vol. 68, no. 6. IEEE, pp. 3823–3828, 2022."},"publisher":"IEEE","corr_author":"1","oa":1,"department":[{"_id":"MaKw"}],"oa_version":"Preprint","publication_identifier":{"issn":["0018-9448"],"eissn":["1557-9654"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","arxiv":1,"title":"List-decodability with large radius for Reed-Solomon codes","external_id":{"isi":["000799622500022"],"arxiv":["2012.10584"]},"scopus_import":"1","day":"01","year":"2022","status":"public","page":"3823-3828","abstract":[{"lang":"eng","text":"List-decodability of Reed–Solomon codes has received a lot of attention, but the best-possible dependence between the parameters is still not well-understood. In this work, we focus on the case where the list-decoding radius is of the form r = 1-ε for ε tending to zero. Our main result states that there exist Reed–Solomon codes with rate Ω(ε) which are (1 - ε, O(1/ε))-list-decodable, meaning that any Hamming ball of radius 1-ε contains at most O(1/ε) codewords. This trade-off between rate and list-decoding radius is best-possible for any code with list size less than exponential in the block length. By achieving this trade-off between rate and list-decoding radius we improve a recent result of Guo, Li, Shangguan, Tamo, and Wootters, and resolve the main motivating question of their work. Moreover, while their result requires the field to be exponentially large in the block length, we only need the field size to be polynomially large (and in fact, almost-linear suffices). We deduce our main result from a more general theorem, in which we prove good list-decodability properties of random puncturings of any given code with very large distance."}],"issue":"6","month":"06","type":"journal_article","_id":"10775","date_updated":"2025-07-10T11:50:08Z","volume":68,"acknowledgement":"Research supported by NSF Award DMS-1953990.","quality_controlled":"1"},{"quality_controlled":"1","acknowledgement":"The work by Zuzana Patáková has been partially supported by Charles University Research Center Program No. UNCE/SCI/022, and part of it was done during her research stay at IST Austria. The work by Martin Tancer is supported by the GAČR Grant 19-04113Y and by the Charles University Projects PRIMUS/17/SCI/3 and UNCE/SCI/004.","volume":68,"date_updated":"2023-08-02T14:38:58Z","_id":"10776","type":"journal_article","month":"12","abstract":[{"text":"Let K be a convex body in Rn (i.e., a compact convex set with nonempty interior). Given a point p in the interior of K, a hyperplane h passing through p is called barycentric if p is the barycenter of K∩h. In 1961, Grünbaum raised the question whether, for every K, there exists an interior point p through which there are at least n+1 distinct barycentric hyperplanes. Two years later, this was seemingly resolved affirmatively by showing that this is the case if p=p0 is the point of maximal depth in K. However, while working on a related question, we noticed that one of the auxiliary claims in the proof is incorrect. Here, we provide a counterexample; this re-opens Grünbaum’s question. It follows from known results that for n≥2, there are always at least three distinct barycentric cuts through the point p0∈K of maximal depth. Using tools related to Morse theory we are able to improve this bound: four distinct barycentric cuts through p0 are guaranteed if n≥3.","lang":"eng"}],"page":"1133-1154","status":"public","day":"01","year":"2022","scopus_import":"1","title":"Barycentric cuts through a convex body","arxiv":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"arxiv":["2003.13536"],"isi":["000750681500001"]},"publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"department":[{"_id":"UlWa"}],"oa_version":"Preprint","oa":1,"citation":{"chicago":"Patakova, Zuzana, Martin Tancer, and Uli Wagner. “Barycentric Cuts through a Convex Body.” <i>Discrete and Computational Geometry</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00454-021-00364-7\">https://doi.org/10.1007/s00454-021-00364-7</a>.","ista":"Patakova Z, Tancer M, Wagner U. 2022. Barycentric cuts through a convex body. Discrete and Computational Geometry. 68, 1133–1154.","short":"Z. Patakova, M. Tancer, U. Wagner, Discrete and Computational Geometry 68 (2022) 1133–1154.","ama":"Patakova Z, Tancer M, Wagner U. Barycentric cuts through a convex body. <i>Discrete and Computational Geometry</i>. 2022;68:1133-1154. doi:<a href=\"https://doi.org/10.1007/s00454-021-00364-7\">10.1007/s00454-021-00364-7</a>","apa":"Patakova, Z., Tancer, M., &#38; Wagner, U. (2022). Barycentric cuts through a convex body. <i>Discrete and Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-021-00364-7\">https://doi.org/10.1007/s00454-021-00364-7</a>","mla":"Patakova, Zuzana, et al. “Barycentric Cuts through a Convex Body.” <i>Discrete and Computational Geometry</i>, vol. 68, Springer Nature, 2022, pp. 1133–54, doi:<a href=\"https://doi.org/10.1007/s00454-021-00364-7\">10.1007/s00454-021-00364-7</a>.","ieee":"Z. Patakova, M. Tancer, and U. Wagner, “Barycentric cuts through a convex body,” <i>Discrete and Computational Geometry</i>, vol. 68. Springer Nature, pp. 1133–1154, 2022."},"publisher":"Springer Nature","date_published":"2022-12-01T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/2003.13536","open_access":"1"}],"publication_status":"published","article_type":"original","intvolume":"        68","isi":1,"publication":"Discrete and Computational Geometry","article_processing_charge":"No","doi":"10.1007/s00454-021-00364-7","language":[{"iso":"eng"}],"author":[{"first_name":"Zuzana","full_name":"Patakova, Zuzana","id":"48B57058-F248-11E8-B48F-1D18A9856A87","last_name":"Patakova","orcid":"0000-0002-3975-1683"},{"last_name":"Tancer","full_name":"Tancer, Martin","first_name":"Martin"},{"full_name":"Wagner, Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","last_name":"Wagner","orcid":"0000-0002-1494-0568","first_name":"Uli"}],"date_created":"2022-02-20T23:01:35Z"},{"pmid":1,"related_material":{"record":[{"status":"public","id":"14711","relation":"dissertation_contains"}]},"language":[{"iso":"eng"}],"author":[{"first_name":"Nicholas H","full_name":"Barton, Nicholas H","last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240"},{"full_name":"Olusanya, Oluwafunmilola O","last_name":"Olusanya","id":"41AD96DC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1971-8314","first_name":"Oluwafunmilola O"}],"date_created":"2022-02-21T16:08:10Z","keyword":["General Agricultural and Biological Sciences","General Biochemistry","Genetics and Molecular Biology"],"intvolume":"       377","isi":1,"publication_status":"published","article_type":"original","has_accepted_license":"1","publication":"Philosophical Transactions of the Royal Society B: Biological Sciences","article_processing_charge":"No","doi":"10.1098/rstb.2021.0009","citation":{"ama":"Barton NH, Olusanya OO. The response of a metapopulation to a changing environment. <i>Philosophical Transactions of the Royal Society B: Biological Sciences</i>. 2022;377(1848). doi:<a href=\"https://doi.org/10.1098/rstb.2021.0009\">10.1098/rstb.2021.0009</a>","chicago":"Barton, Nicholas H, and Oluwafunmilola O Olusanya. “The Response of a Metapopulation to a Changing Environment.” <i>Philosophical Transactions of the Royal Society B: Biological Sciences</i>. The Royal Society, 2022. <a href=\"https://doi.org/10.1098/rstb.2021.0009\">https://doi.org/10.1098/rstb.2021.0009</a>.","short":"N.H. Barton, O.O. Olusanya, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).","ista":"Barton NH, Olusanya OO. 2022. The response of a metapopulation to a changing environment. Philosophical Transactions of the Royal Society B: Biological Sciences. 377(1848).","ieee":"N. H. Barton and O. O. Olusanya, “The response of a metapopulation to a changing environment,” <i>Philosophical Transactions of the Royal Society B: Biological Sciences</i>, vol. 377, no. 1848. The Royal Society, 2022.","mla":"Barton, Nicholas H., and Oluwafunmilola O. Olusanya. “The Response of a Metapopulation to a Changing Environment.” <i>Philosophical Transactions of the Royal Society B: Biological Sciences</i>, vol. 377, no. 1848, The Royal Society, 2022, doi:<a href=\"https://doi.org/10.1098/rstb.2021.0009\">10.1098/rstb.2021.0009</a>.","apa":"Barton, N. H., &#38; Olusanya, O. O. (2022). The response of a metapopulation to a changing environment. <i>Philosophical Transactions of the Royal Society B: Biological Sciences</i>. The Royal Society. <a href=\"https://doi.org/10.1098/rstb.2021.0009\">https://doi.org/10.1098/rstb.2021.0009</a>"},"publisher":"The Royal Society","corr_author":"1","ddc":["570"],"date_published":"2022-04-11T00:00:00Z","department":[{"_id":"GradSch"},{"_id":"NiBa"}],"oa_version":"Published Version","file":[{"access_level":"open_access","file_size":1349672,"date_updated":"2022-08-02T06:14:32Z","relation":"main_file","content_type":"application/pdf","file_id":"11719","checksum":"3b0243738f01bf3c07e0d7e8dc64f71d","date_created":"2022-08-02T06:14:32Z","creator":"dernst","success":1,"file_name":"2022_PhilosophicalTransactionsRSB_Barton.pdf"}],"publication_identifier":{"issn":["0962-8436"],"eissn":["1471-2970"]},"oa":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"11","year":"2022","status":"public","external_id":{"isi":["000758140300001"],"pmid":["35184588"]},"title":"The response of a metapopulation to a changing environment","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","scopus_import":"1","file_date_updated":"2022-08-02T06:14:32Z","project":[{"grant_number":"P32896","name":"Causes and consequences of population fragmentation","_id":"c08d3278-5a5b-11eb-8a69-fdb09b55f4b8"}],"abstract":[{"lang":"eng","text":"A species distributed across diverse environments may adapt to local conditions. We ask how quickly such a species changes its range in response to changed conditions. Szép et al. (Szép E, Sachdeva H, Barton NH. 2021 Polygenic local adaptation in metapopulations: a stochastic eco-evolutionary model. Evolution75, 1030–1045 (doi:10.1111/evo.14210)) used the infinite island model to find the stationary distribution of allele frequencies and deme sizes. We extend this to find how a metapopulation responds to changes in carrying capacity, selection strength, or migration rate when deme sizes are fixed. We further develop a ‘fixed-state’ approximation. Under this approximation, polymorphism is only possible for a narrow range of habitat proportions when selection is weak compared to drift, but for a much wider range otherwise. When rates of selection or migration relative to drift change in a single deme of the metapopulation, the population takes a time of order m−1 to reach the new equilibrium. However, even with many loci, there can be substantial fluctuations in net adaptation, because at each locus, alleles randomly get lost or fixed. Thus, in a finite metapopulation, variation may gradually be lost by chance, even if it would persist in an infinite metapopulation. When conditions change across the whole metapopulation, there can be rapid change, which is predicted well by the fixed-state approximation. This work helps towards an understanding of how metapopulations extend their range across diverse environments.\r\nThis article is part of the theme issue ‘Species’ ranges in the face of changing environments (Part II)’."}],"_id":"10787","issue":"1848","month":"04","type":"journal_article","quality_controlled":"1","volume":377,"date_updated":"2026-04-07T12:54:28Z","acknowledgement":"This research was partly funded by the Austrian Science Fund (FWF) [FWF P-32896B]."},{"doi":"10.1093/oons/kvac009","article_processing_charge":"No","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"PreCl"},{"_id":"Bio"}],"ec_funded":1,"has_accepted_license":"1","publication":"Oxford Open Neuroscience","article_type":"original","publication_status":"published","intvolume":"         1","date_created":"2022-02-25T07:52:11Z","author":[{"last_name":"Hansen","id":"38853E16-F248-11E8-B48F-1D18A9856A87","full_name":"Hansen, Andi H","first_name":"Andi H"},{"full_name":"Pauler, Florian","orcid":"0000-0002-7462-0048","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","last_name":"Pauler","first_name":"Florian"},{"last_name":"Riedl","id":"3BE60946-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4844-6311","full_name":"Riedl, Michael","first_name":"Michael"},{"last_name":"Streicher","id":"36BCB99C-F248-11E8-B48F-1D18A9856A87","full_name":"Streicher, Carmen","first_name":"Carmen"},{"last_name":"Heger","id":"4B76FFD2-F248-11E8-B48F-1D18A9856A87","full_name":"Heger, Anna-Magdalena","first_name":"Anna-Magdalena"},{"full_name":"Laukoter, Susanne","orcid":"0000-0002-7903-3010","id":"2D6B7A9A-F248-11E8-B48F-1D18A9856A87","last_name":"Laukoter","first_name":"Susanne"},{"last_name":"Sommer","id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1216-9105","full_name":"Sommer, Christoph M","first_name":"Christoph M"},{"first_name":"Armel","full_name":"Nicolas, Armel","id":"2A103192-F248-11E8-B48F-1D18A9856A87","last_name":"Nicolas"},{"first_name":"Björn","full_name":"Hof, Björn","orcid":"0000-0003-2057-2754","last_name":"Hof","id":"3A374330-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Tsai","full_name":"Tsai, Li Huei","first_name":"Li Huei"},{"first_name":"Thomas","last_name":"Rülicke","full_name":"Rülicke, Thomas"},{"full_name":"Hippenmeyer, Simon","orcid":"0000-0003-2279-1061","id":"37B36620-F248-11E8-B48F-1D18A9856A87","last_name":"Hippenmeyer","first_name":"Simon"}],"language":[{"iso":"eng"}],"pmid":1,"related_material":{"record":[{"relation":"dissertation_contains","id":"12726","status":"public"},{"id":"14530","relation":"dissertation_contains","status":"public"}]},"oa":1,"publication_identifier":{"eissn":["2753-149X"]},"oa_version":"Published Version","file":[{"file_name":"2023_OxfordOpenNeuroscience_Hansen.pdf","creator":"dernst","date_created":"2023-08-16T08:00:30Z","checksum":"822e76e056c07099d1fb27d1ece5941b","success":1,"file_id":"14061","content_type":"application/pdf","relation":"main_file","date_updated":"2023-08-16T08:00:30Z","file_size":4846551,"access_level":"open_access"}],"department":[{"_id":"SiHi"},{"_id":"BjHo"},{"_id":"LifeSc"},{"_id":"EM-Fac"}],"ddc":["570"],"date_published":"2022-07-07T00:00:00Z","corr_author":"1","publisher":"Oxford University Press","citation":{"mla":"Hansen, Andi H., et al. “Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.” <i>Oxford Open Neuroscience</i>, vol. 1, no. 1, kvac009, Oxford University Press, 2022, doi:<a href=\"https://doi.org/10.1093/oons/kvac009\">10.1093/oons/kvac009</a>.","apa":"Hansen, A. H., Pauler, F., Riedl, M., Streicher, C., Heger, A.-M., Laukoter, S., … Hippenmeyer, S. (2022). Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. <i>Oxford Open Neuroscience</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/oons/kvac009\">https://doi.org/10.1093/oons/kvac009</a>","ieee":"A. H. Hansen <i>et al.</i>, “Tissue-wide effects override cell-intrinsic gene function in radial neuron migration,” <i>Oxford Open Neuroscience</i>, vol. 1, no. 1. Oxford University Press, 2022.","ista":"Hansen AH, Pauler F, Riedl M, Streicher C, Heger A-M, Laukoter S, Sommer CM, Nicolas A, Hof B, Tsai LH, Rülicke T, Hippenmeyer S. 2022. Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. 1(1), kvac009.","chicago":"Hansen, Andi H, Florian Pauler, Michael Riedl, Carmen Streicher, Anna-Magdalena Heger, Susanne Laukoter, Christoph M Sommer, et al. “Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.” <i>Oxford Open Neuroscience</i>. Oxford University Press, 2022. <a href=\"https://doi.org/10.1093/oons/kvac009\">https://doi.org/10.1093/oons/kvac009</a>.","short":"A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter, C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford Open Neuroscience 1 (2022).","ama":"Hansen AH, Pauler F, Riedl M, et al. Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. <i>Oxford Open Neuroscience</i>. 2022;1(1). doi:<a href=\"https://doi.org/10.1093/oons/kvac009\">10.1093/oons/kvac009</a>"},"abstract":[{"lang":"eng","text":"The mammalian neocortex is composed of diverse neuronal and glial cell classes that broadly arrange in six distinct laminae. Cortical layers emerge during development and defects in the developmental programs that orchestrate cortical lamination are associated with neurodevelopmental diseases. The developmental principle of cortical layer formation depends on concerted radial projection neuron migration, from their birthplace to their final target position. Radial migration occurs in defined sequential steps, regulated by a large array of signaling pathways. However, based on genetic loss-of-function experiments, most studies have thus far focused on the role of cell-autonomous gene function. Yet, cortical neuron migration in situ is a complex process and migrating neurons traverse along diverse cellular compartments and environments. The role of tissue-wide properties and genetic state in radial neuron migration is however not clear. Here we utilized mosaic analysis with double markers (MADM) technology to either sparsely or globally delete gene function, followed by quantitative single-cell phenotyping. The MADM-based gene ablation paradigms in combination with computational modeling demonstrated that global tissue-wide effects predominate cell-autonomous gene function albeit in a gene-specific manner. Our results thus suggest that the genetic landscape in a tissue critically affects the overall migration phenotype of individual cortical projection neurons. In a broader context, our findings imply that global tissue-wide effects represent an essential component of the underlying etiology associated with focal malformations of cortical development in particular, and neurological diseases in general."}],"project":[{"_id":"25D61E48-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Molecular Mechanisms of Cerebral Cortex Development","grant_number":"618444"},{"name":"Molecular mechanisms of radial neuronal migration","grant_number":"24812","_id":"2625A13E-B435-11E9-9278-68D0E5697425"}],"file_date_updated":"2023-08-16T08:00:30Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Tissue-wide effects override cell-intrinsic gene function in radial neuron migration","external_id":{"pmid":["38596707"]},"status":"public","year":"2022","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"07","acknowledgement":"A.H.H. was a recipient of a DOC Fellowship (24812) of the Austrian Academy of Sciences. This work also received support from IST Austria institutional funds; the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007–2013) under REA grant agreement No 618444 to S.H.\r\nAPC funding was obtained by IST Austria institutional funds.\r\nWe thank A. Sommer and C. Czepe (VBCF GmbH, NGS Unit), L. Andersen, J. Sonntag and J. Renno for technical support and/or initial experiments; M. Sixt, J. Nimpf and all members of the Hippenmeyer lab for discussion. This research was supported by the Scientific Service Units of IST Austria through resources provided by the Imaging and Optics Facility, Lab Support Facility and Preclinical Facility.","date_updated":"2026-04-07T13:29:13Z","volume":1,"quality_controlled":"1","type":"journal_article","month":"07","issue":"1","_id":"10791","article_number":"kvac009"},{"publication_status":"submitted","doi":"10.21203/rs.3.rs-1316167/v1","abstract":[{"text":"Background\r\nProper cerebral cortical development depends on the tightly orchestrated migration of newly born neurons from the inner ventricular and subventricular zones to the outer cortical plate. Any disturbance in this process during prenatal stages may lead to neuronal migration disorders (NMDs), which can vary in extent from focal to global. Furthermore, NMDs show a substantial comorbidity with other neurodevelopmental disorders, notably autism spectrum disorders (ASDs). Our previous work demonstrated focal neuronal migration defects in mice carrying loss-of-function alleles of the recognized autism risk gene WDFY3. However, the cellular origins of these defects in Wdfy3 mutant mice remain elusive and uncovering it will provide critical insight into WDFY3-dependent disease pathology .\r\nMethods\r\nHere, in an effort to untangle the origins of NMDs in Wdfy3lacZ mice, we employed mosaic analysis with double markers (MADM). MADM technology enabled us to genetically distinctly track and phenotypically analyze mutant and wild type cells concomitantly in vivo using immunofluorescent techniques.\r\nResults\r\nWe revealed a cell autonomous requirement of WDFY3 for accurate laminar positioning of cortical projection neurons and elimination of mispositioned cells during early postnatal life. In addition, we identified significant deviations in dendritic arborization, as well as synaptic density and morphology between wild type, heterozygous, and homozygous Wdfy3 mutant neurons in Wdfy3-MADM reporter mice at postnatal stages. Limitations While Wdfy3 mutant mice have provided valuable insight into prenatal aspects of ASD pathology that remain inaccessible to investigation in humans, like most animal models, they do not a perfectly replicate all aspects of human ASD biology. The lack of human data makes it indeterminate whether morphological deviations described here apply to ASD patients.\r\nConclusions\r\nOur genetic approach revealed several cell autonomous requirements of Wdfy3 in neuronal development that could underly the pathogenic mechanisms of WDFY3-related ASD conditions. The results are also consistent with findings in other ASD animal models and patients and suggest an important role for Wdfy3 in regulating neuronal function and interconnectivity in postnatal life.","lang":"eng"}],"article_processing_charge":"No","page":"30","status":"public","language":[{"iso":"eng"}],"author":[{"full_name":"Schaaf, Zachary","last_name":"Schaaf","first_name":"Zachary"},{"first_name":"Lyvin","last_name":"Tat","full_name":"Tat, Lyvin"},{"full_name":"Cannizzaro, Noemi","last_name":"Cannizzaro","first_name":"Noemi"},{"first_name":"Ralph","full_name":"Green, Ralph","last_name":"Green"},{"full_name":"Rülicke, Thomas","last_name":"Rülicke","first_name":"Thomas"},{"first_name":"Simon","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer"},{"first_name":"K","last_name":"Zarbalis","full_name":"Zarbalis, K"}],"pmid":1,"year":"2022","day":"16","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"external_id":{"pmid":["PPR454733"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"WDFY3 cell autonomously controls neuronal migration","date_created":"2022-02-25T07:53:26Z","publication_identifier":{"eissn":["2693-5015"]},"department":[{"_id":"SiHi"}],"oa_version":"Preprint","oa":1,"date_updated":"2023-10-17T13:06:52Z","_id":"10792","publisher":"Research Square","citation":{"chicago":"Schaaf, Zachary, Lyvin Tat, Noemi Cannizzaro, Ralph Green, Thomas Rülicke, Simon Hippenmeyer, and K Zarbalis. “WDFY3 Cell Autonomously Controls Neuronal Migration.” Research Square, n.d. <a href=\"https://doi.org/10.21203/rs.3.rs-1316167/v1\">https://doi.org/10.21203/rs.3.rs-1316167/v1</a>.","ista":"Schaaf Z, Tat L, Cannizzaro N, Green R, Rülicke T, Hippenmeyer S, Zarbalis K. WDFY3 cell autonomously controls neuronal migration. <a href=\"https://doi.org/10.21203/rs.3.rs-1316167/v1\">10.21203/rs.3.rs-1316167/v1</a>.","short":"Z. Schaaf, L. Tat, N. Cannizzaro, R. Green, T. Rülicke, S. Hippenmeyer, K. Zarbalis, (n.d.).","ama":"Schaaf Z, Tat L, Cannizzaro N, et al. WDFY3 cell autonomously controls neuronal migration. doi:<a href=\"https://doi.org/10.21203/rs.3.rs-1316167/v1\">10.21203/rs.3.rs-1316167/v1</a>","mla":"Schaaf, Zachary, et al. <i>WDFY3 Cell Autonomously Controls Neuronal Migration</i>. Research Square, doi:<a href=\"https://doi.org/10.21203/rs.3.rs-1316167/v1\">10.21203/rs.3.rs-1316167/v1</a>.","apa":"Schaaf, Z., Tat, L., Cannizzaro, N., Green, R., Rülicke, T., Hippenmeyer, S., &#38; Zarbalis, K. (n.d.). WDFY3 cell autonomously controls neuronal migration. Research Square. <a href=\"https://doi.org/10.21203/rs.3.rs-1316167/v1\">https://doi.org/10.21203/rs.3.rs-1316167/v1</a>","ieee":"Z. Schaaf <i>et al.</i>, “WDFY3 cell autonomously controls neuronal migration.” Research Square."},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.21203/rs.3.rs-1316167/v1"}],"type":"preprint","date_published":"2022-02-16T00:00:00Z","month":"02"},{"type":"journal_article","issue":"1","month":"02","_id":"10797","acknowledgement":"The authors would like to thank Gioia Carinci and Cristian Giardinà for useful discussions. F.R. and S.F. thank Jean-René Chazottes for a stay at CPHT (Institut Polytechnique de Paris), in the realm of Chaire d’Alembert (Paris-Saclay University), where part of this work was performed. S.F. acknowledges Simona Villa for her support in creating the picture. S.F. acknowledges financial support from NWO via the grant TOP1.17.019. F.S. acknowledges financial support from the European Union’s Horizon 2020 research and innovation programme under the Marie-Skłodowska-Curie grant agreement No. 754411.","volume":58,"date_updated":"2025-04-14T07:43:48Z","quality_controlled":"1","scopus_import":"1","title":"Orthogonal polynomial duality of boundary driven particle systems and non-equilibrium correlations","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"isi":["000752489300010"],"arxiv":["2007.08272"]},"arxiv":1,"status":"public","day":"01","year":"2022","project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"abstract":[{"text":"We consider symmetric partial exclusion and inclusion processes in a general graph in contact with reservoirs, where we allow both for edge disorder and well-chosen site disorder. We extend the classical dualities to this context and then we derive new orthogonal polynomial dualities. From the classical dualities, we derive the uniqueness of the non-equilibrium steady state and obtain correlation inequalities. Starting from the orthogonal polynomial dualities, we show universal properties of n-point correlation functions in the non-equilibrium steady state for systems with at most two different reservoir parameters, such as a chain with reservoirs at left and right ends.","lang":"eng"},{"lang":"fre","text":"Nous considérons des processus d’exclusion partielle, et des processus d’inclusion sur un graphe général en contact avec des réservoirs. Nous autorisons la présence de inhomogenéités sur les arrêts ainsi que sur les sommets du graph. Nous généralisons les “dualités classiques” dans ce contexte et nous démontrons des nouvelles dualités orthogonales. À partir des dualités classiques, nous démontrons l’unicité de l’état stationnaire non-équilibre, ainsi que des inégalités de corrélation. À partir des dualités orthogonales nous démontrons des propriétés universelles des fonctions de corrélation à n points dans l’état stationnaire non-équilibre pour des systèmes avec deux paramètres de réservoirs inégaux, comme par exemple une chaîne avec des réservoirs à droite et à gauche."}],"page":"220-247","main_file_link":[{"url":"https://arxiv.org/abs/2007.08272","open_access":"1"}],"date_published":"2022-02-01T00:00:00Z","citation":{"ama":"Floreani S, Redig F, Sau F. Orthogonal polynomial duality of boundary driven particle systems and non-equilibrium correlations. <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. 2022;58(1):220-247. doi:<a href=\"https://doi.org/10.1214/21-AIHP1163\">10.1214/21-AIHP1163</a>","chicago":"Floreani, Simone, Frank Redig, and Federico Sau. “Orthogonal Polynomial Duality of Boundary Driven Particle Systems and Non-Equilibrium Correlations.” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. Institute of Mathematical Statistics, 2022. <a href=\"https://doi.org/10.1214/21-AIHP1163\">https://doi.org/10.1214/21-AIHP1163</a>.","short":"S. Floreani, F. Redig, F. Sau, Annales de l’institut Henri Poincare (B) Probability and Statistics 58 (2022) 220–247.","ista":"Floreani S, Redig F, Sau F. 2022. Orthogonal polynomial duality of boundary driven particle systems and non-equilibrium correlations. Annales de l’institut Henri Poincare (B) Probability and Statistics. 58(1), 220–247.","ieee":"S. Floreani, F. Redig, and F. Sau, “Orthogonal polynomial duality of boundary driven particle systems and non-equilibrium correlations,” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>, vol. 58, no. 1. Institute of Mathematical Statistics, pp. 220–247, 2022.","apa":"Floreani, S., Redig, F., &#38; Sau, F. (2022). Orthogonal polynomial duality of boundary driven particle systems and non-equilibrium correlations. <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/21-AIHP1163\">https://doi.org/10.1214/21-AIHP1163</a>","mla":"Floreani, Simone, et al. “Orthogonal Polynomial Duality of Boundary Driven Particle Systems and Non-Equilibrium Correlations.” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>, vol. 58, no. 1, Institute of Mathematical Statistics, 2022, pp. 220–47, doi:<a href=\"https://doi.org/10.1214/21-AIHP1163\">10.1214/21-AIHP1163</a>."},"publisher":"Institute of Mathematical Statistics","oa":1,"publication_identifier":{"issn":["0246-0203"]},"department":[{"_id":"JaMa"}],"oa_version":"Preprint","date_created":"2022-02-27T23:01:50Z","author":[{"first_name":"Simone","full_name":"Floreani, Simone","last_name":"Floreani"},{"first_name":"Frank","full_name":"Redig, Frank","last_name":"Redig"},{"first_name":"Federico","full_name":"Sau, Federico","last_name":"Sau","id":"E1836206-9F16-11E9-8814-AEFDE5697425"}],"language":[{"iso":"eng"}],"publication":"Annales de l'institut Henri Poincare (B) Probability and Statistics","ec_funded":1,"doi":"10.1214/21-AIHP1163","article_processing_charge":"No","publication_status":"published","article_type":"original","intvolume":"        58","isi":1},{"month":"03","alternative_title":["ISTA Thesis"],"type":"dissertation","_id":"10799","date_updated":"2026-04-07T14:19:48Z","OA_place":"publisher","supervisor":[{"full_name":"Lampert, Christoph","last_name":"Lampert","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887","first_name":"Christoph"}],"degree_awarded":"PhD","title":"Robustness and fairness in machine learning","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","year":"2022","day":"08","status":"public","file_date_updated":"2022-03-10T12:11:48Z","page":"176","abstract":[{"lang":"eng","text":"Because of the increasing popularity of machine learning methods, it is becoming important to understand the impact of learned components on automated decision-making systems and to guarantee that their consequences are beneficial to society. In other words, it is necessary to ensure that machine learning is sufficiently trustworthy to be used in real-world applications. This thesis studies two properties of machine learning models that are highly desirable for the\r\nsake of reliability: robustness and fairness. In the first part of the thesis we study the robustness of learning algorithms to training data corruption. Previous work has shown that machine learning models are vulnerable to a range\r\nof training set issues, varying from label noise through systematic biases to worst-case data manipulations. This is an especially relevant problem from a present perspective, since modern machine learning methods are particularly data hungry and therefore practitioners often have to rely on data collected from various external sources, e.g. from the Internet, from app users or via crowdsourcing. Naturally, such sources vary greatly in the quality and reliability of the\r\ndata they provide. With these considerations in mind, we study the problem of designing machine learning algorithms that are robust to corruptions in data coming from multiple sources. We show that, in contrast to the case of a single dataset with outliers, successful learning within this model is possible both theoretically and practically, even under worst-case data corruptions. The second part of this thesis deals with fairness-aware machine learning. There are multiple areas where machine learning models have shown promising results, but where careful considerations are required, in order to avoid discrimanative decisions taken by such learned components. Ensuring fairness can be particularly challenging, because real-world training datasets are expected to contain various forms of historical bias that may affect the learning process. In this thesis we show that data corruption can indeed render the problem of achieving fairness impossible, by tightly characterizing the theoretical limits of fair learning under worst-case data manipulations. However, assuming access to clean data, we also show how fairness-aware learning can be made practical in contexts beyond binary classification, in particular in the challenging learning to rank setting."}],"project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"665385","name":"International IST Doctoral Program"}],"ddc":["000"],"date_published":"2022-03-08T00:00:00Z","publisher":"Institute of Science and Technology Austria","citation":{"ama":"Konstantinov NH. Robustness and fairness in machine learning. 2022. doi:<a href=\"https://doi.org/10.15479/at:ista:10799\">10.15479/at:ista:10799</a>","ista":"Konstantinov NH. 2022. Robustness and fairness in machine learning. Institute of Science and Technology Austria.","chicago":"Konstantinov, Nikola H. “Robustness and Fairness in Machine Learning.” Institute of Science and Technology Austria, 2022. <a href=\"https://doi.org/10.15479/at:ista:10799\">https://doi.org/10.15479/at:ista:10799</a>.","short":"N.H. Konstantinov, Robustness and Fairness in Machine Learning, Institute of Science and Technology Austria, 2022.","ieee":"N. H. Konstantinov, “Robustness and fairness in machine learning,” Institute of Science and Technology Austria, 2022.","apa":"Konstantinov, N. H. (2022). <i>Robustness and fairness in machine learning</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:10799\">https://doi.org/10.15479/at:ista:10799</a>","mla":"Konstantinov, Nikola H. <i>Robustness and Fairness in Machine Learning</i>. Institute of Science and Technology Austria, 2022, doi:<a href=\"https://doi.org/10.15479/at:ista:10799\">10.15479/at:ista:10799</a>."},"corr_author":"1","oa":1,"file":[{"access_level":"open_access","date_updated":"2022-03-06T11:42:54Z","file_size":4204905,"content_type":"application/pdf","relation":"main_file","checksum":"626bc523ae8822d20e635d0e2d95182e","date_created":"2022-03-06T11:42:54Z","success":1,"creator":"nkonstan","file_id":"10823","file_name":"thesis.pdf"},{"file_name":"thesis.zip","relation":"source_file","content_type":"application/x-zip-compressed","file_id":"10824","creator":"nkonstan","checksum":"e2ca2b88350ac8ea1515b948885cbcb1","date_created":"2022-03-06T11:42:57Z","access_level":"closed","file_size":22841103,"date_updated":"2022-03-10T12:11:48Z"}],"department":[{"_id":"GradSch"},{"_id":"ChLa"}],"oa_version":"Published Version","publication_identifier":{"isbn":["978-3-99078-015-2"],"issn":["2663-337X"]},"keyword":["robustness","fairness","machine learning","PAC learning","adversarial learning"],"date_created":"2022-02-28T13:03:49Z","related_material":{"record":[{"relation":"part_of_dissertation","id":"10802","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"10803"},{"id":"6590","relation":"part_of_dissertation","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"8724"}]},"language":[{"iso":"eng"}],"author":[{"full_name":"Konstantinov, Nikola H","orcid":"0009-0009-5204-7621","last_name":"Konstantinov","id":"4B9D76E4-F248-11E8-B48F-1D18A9856A87","first_name":"Nikola H"}],"doi":"10.15479/at:ista:10799","article_processing_charge":"No","has_accepted_license":"1","ec_funded":1,"publication_status":"published"},{"file_date_updated":"2022-07-12T15:08:28Z","page":"1-60","abstract":[{"lang":"eng","text":"Addressing fairness concerns about machine learning models is a crucial step towards their long-term adoption in real-world automated systems. While many approaches have been developed for training fair models from data, little is known about the robustness of these methods to data corruption. In this work we consider fairness-aware learning under worst-case data manipulations. We show that an adversary can in some situations force any learner to return an overly biased classifier, regardless of the sample size and with or without degrading\r\naccuracy, and that the strength of the excess bias increases for learning problems with underrepresented protected groups in the data. We also prove that our hardness results are tight up to constant factors. To this end, we study two natural learning algorithms that optimize for both accuracy and fairness and show that these algorithms enjoy guarantees that are order-optimal in terms of the corruption ratio and the protected groups frequencies in the large data\r\nlimit."}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"01","year":"2022","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["2102.06004"]},"title":"Fairness-aware PAC learning from corrupted data","arxiv":1,"scopus_import":"1","quality_controlled":"1","volume":23,"date_updated":"2026-04-07T14:19:48Z","acknowledgement":"The authors thank Eugenia Iofinova and Bernd Prach for providing feedback on early versions of this paper. This publication was made possible by an ETH AI Center postdoctoral fellowship to Nikola Konstantinov.","_id":"10802","month":"05","type":"journal_article","intvolume":"        23","publication_status":"published","article_type":"original","publication":"Journal of Machine Learning Research","has_accepted_license":"1","article_processing_charge":"No","related_material":{"record":[{"relation":"shorter_version","id":"13241","status":"public"},{"status":"public","id":"10799","relation":"dissertation_contains"}]},"language":[{"iso":"eng"}],"author":[{"full_name":"Konstantinov, Nikola H","id":"4B9D76E4-F248-11E8-B48F-1D18A9856A87","last_name":"Konstantinov","orcid":"0009-0009-5204-7621","first_name":"Nikola H"},{"last_name":"Lampert","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Lampert, Christoph","first_name":"Christoph"}],"date_created":"2022-02-28T14:05:42Z","keyword":["Fairness","robustness","data poisoning","trustworthy machine learning","PAC learning"],"file":[{"file_name":"2022_JournalMachineLearningResearch_Konstantinov.pdf","relation":"main_file","content_type":"application/pdf","file_id":"11570","creator":"kschuh","success":1,"date_created":"2022-07-12T15:08:28Z","checksum":"9cac897b54a0ddf3a553a2c33e88cfda","access_level":"open_access","file_size":551862,"date_updated":"2022-07-12T15:08:28Z"}],"department":[{"_id":"ChLa"}],"oa_version":"Published Version","publication_identifier":{"issn":["1532-4435"],"eissn":["1533-7928"]},"oa":1,"citation":{"ama":"Konstantinov NH, Lampert C. Fairness-aware PAC learning from corrupted data. <i>Journal of Machine Learning Research</i>. 2022;23:1-60.","ista":"Konstantinov NH, Lampert C. 2022. Fairness-aware PAC learning from corrupted data. Journal of Machine Learning Research. 23, 1–60.","short":"N.H. Konstantinov, C. Lampert, Journal of Machine Learning Research 23 (2022) 1–60.","chicago":"Konstantinov, Nikola H, and Christoph Lampert. “Fairness-Aware PAC Learning from Corrupted Data.” <i>Journal of Machine Learning Research</i>. ML Research Press, 2022.","ieee":"N. H. Konstantinov and C. Lampert, “Fairness-aware PAC learning from corrupted data,” <i>Journal of Machine Learning Research</i>, vol. 23. ML Research Press, pp. 1–60, 2022.","apa":"Konstantinov, N. H., &#38; Lampert, C. (2022). Fairness-aware PAC learning from corrupted data. <i>Journal of Machine Learning Research</i>. ML Research Press.","mla":"Konstantinov, Nikola H., and Christoph Lampert. “Fairness-Aware PAC Learning from Corrupted Data.” <i>Journal of Machine Learning Research</i>, vol. 23, ML Research Press, 2022, pp. 1–60."},"publisher":"ML Research Press","corr_author":"1","date_published":"2022-05-01T00:00:00Z","ddc":["004"]},{"citation":{"ista":"Römhild R, Bollenbach MT, Andersson DI. 2022. The physiology and genetics of bacterial responses to antibiotic combinations. Nature Reviews Microbiology. 20, 478–490.","chicago":"Römhild, Roderich, Mark Tobias Bollenbach, and Dan I. Andersson. “The Physiology and Genetics of Bacterial Responses to Antibiotic Combinations.” <i>Nature Reviews Microbiology</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41579-022-00700-5\">https://doi.org/10.1038/s41579-022-00700-5</a>.","short":"R. Römhild, M.T. Bollenbach, D.I. Andersson, Nature Reviews Microbiology 20 (2022) 478–490.","ama":"Römhild R, Bollenbach MT, Andersson DI. The physiology and genetics of bacterial responses to antibiotic combinations. <i>Nature Reviews Microbiology</i>. 2022;20:478-490. doi:<a href=\"https://doi.org/10.1038/s41579-022-00700-5\">10.1038/s41579-022-00700-5</a>","mla":"Römhild, Roderich, et al. “The Physiology and Genetics of Bacterial Responses to Antibiotic Combinations.” <i>Nature Reviews Microbiology</i>, vol. 20, Springer Nature, 2022, pp. 478–90, doi:<a href=\"https://doi.org/10.1038/s41579-022-00700-5\">10.1038/s41579-022-00700-5</a>.","apa":"Römhild, R., Bollenbach, M. T., &#38; Andersson, D. I. (2022). The physiology and genetics of bacterial responses to antibiotic combinations. <i>Nature Reviews Microbiology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41579-022-00700-5\">https://doi.org/10.1038/s41579-022-00700-5</a>","ieee":"R. Römhild, M. T. Bollenbach, and D. I. Andersson, “The physiology and genetics of bacterial responses to antibiotic combinations,” <i>Nature Reviews Microbiology</i>, vol. 20. Springer Nature, pp. 478–490, 2022."},"publisher":"Springer Nature","date_published":"2022-08-01T00:00:00Z","publication_identifier":{"eissn":["1740-1534"],"issn":["1740-1526"]},"department":[{"_id":"CaGu"}],"oa_version":"None","author":[{"last_name":"Römhild","orcid":"0000-0001-9480-5261","id":"68E56E44-62B0-11EA-B963-444F3DDC885E","full_name":"Römhild, Roderich","first_name":"Roderich"},{"first_name":"Mark Tobias","full_name":"Bollenbach, Mark Tobias","last_name":"Bollenbach","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4398-476X"},{"first_name":"Dan I.","full_name":"Andersson, Dan I.","last_name":"Andersson"}],"language":[{"iso":"eng"}],"pmid":1,"date_created":"2022-03-04T04:33:49Z","keyword":["General Immunology and Microbiology","Microbiology","Infectious Diseases"],"publication_status":"published","article_type":"review","intvolume":"        20","isi":1,"publication":"Nature Reviews Microbiology","article_processing_charge":"No","doi":"10.1038/s41579-022-00700-5","_id":"10812","type":"journal_article","month":"08","quality_controlled":"1","acknowledgement":"The authors thank B. Kavčič and H. Schulenburg for constructive feedback on the manuscript.","volume":20,"date_updated":"2023-08-02T14:41:44Z","status":"public","day":"01","year":"2022","scopus_import":"1","title":"The physiology and genetics of bacterial responses to antibiotic combinations","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"pmid":["35241807"],"isi":["000763891900001"]},"abstract":[{"lang":"eng","text":"Several promising strategies based on combining or cycling different antibiotics have been proposed to increase efficacy and counteract resistance evolution, but we still lack a deep understanding of the physiological responses and genetic mechanisms that underlie antibiotic interactions and the clinical applicability of these strategies. In antibiotic-exposed bacteria, the combined effects of physiological stress responses and emerging resistance mutations (occurring at different time scales) generate complex and often unpredictable dynamics. In this Review, we present our current understanding of bacterial cell physiology and genetics of responses to antibiotics. We emphasize recently discovered mechanisms of synergistic and antagonistic drug interactions, hysteresis in temporal interactions between antibiotics that arise from microbial physiology and interactions between antibiotics and resistance mutations that can cause collateral sensitivity or cross-resistance. We discuss possible connections between the different phenomena and indicate relevant research directions. A better and more unified understanding of drug and genetic interactions is likely to advance antibiotic therapy."}],"page":"478-490"},{"related_material":{"record":[{"status":"public","id":"9978","relation":"earlier_version"}]},"author":[{"first_name":"Deqing","full_name":"Cao, Deqing","last_name":"Cao"},{"first_name":"Xiaoxiao","last_name":"Shen","full_name":"Shen, Xiaoxiao"},{"first_name":"Aiping","full_name":"Wang, Aiping","last_name":"Wang"},{"last_name":"Yu","full_name":"Yu, Fengjiao","first_name":"Fengjiao"},{"full_name":"Wu, Yuping","last_name":"Wu","first_name":"Yuping"},{"first_name":"Siqi","full_name":"Shi, Siqi","last_name":"Shi"},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319","last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander"},{"first_name":"Yuhui","full_name":"Chen, Yuhui","last_name":"Chen"}],"language":[{"iso":"eng"}],"date_created":"2022-03-04T07:50:10Z","keyword":["Process Chemistry and Technology","Biochemistry","Bioengineering","Catalysis"],"isi":1,"intvolume":"         5","publication_status":"published","article_type":"original","publication":"Nature Catalysis","doi":"10.1038/s41929-022-00752-z","article_processing_charge":"No","citation":{"short":"D. Cao, X. Shen, A. Wang, F. Yu, Y. Wu, S. Shi, S.A. Freunberger, Y. Chen, Nature Catalysis 5 (2022) 193–201.","chicago":"Cao, Deqing, Xiaoxiao Shen, Aiping Wang, Fengjiao Yu, Yuping Wu, Siqi Shi, Stefan Alexander Freunberger, and Yuhui Chen. “Threshold Potentials for Fast Kinetics during Mediated Redox Catalysis of Insulators in Li–O2 and Li–S Batteries.” <i>Nature Catalysis</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41929-022-00752-z\">https://doi.org/10.1038/s41929-022-00752-z</a>.","ista":"Cao D, Shen X, Wang A, Yu F, Wu Y, Shi S, Freunberger SA, Chen Y. 2022. Threshold potentials for fast kinetics during mediated redox catalysis of insulators in Li–O2 and Li–S batteries. Nature Catalysis. 5, 193–201.","ama":"Cao D, Shen X, Wang A, et al. Threshold potentials for fast kinetics during mediated redox catalysis of insulators in Li–O2 and Li–S batteries. <i>Nature Catalysis</i>. 2022;5:193-201. doi:<a href=\"https://doi.org/10.1038/s41929-022-00752-z\">10.1038/s41929-022-00752-z</a>","apa":"Cao, D., Shen, X., Wang, A., Yu, F., Wu, Y., Shi, S., … Chen, Y. (2022). Threshold potentials for fast kinetics during mediated redox catalysis of insulators in Li–O2 and Li–S batteries. <i>Nature Catalysis</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41929-022-00752-z\">https://doi.org/10.1038/s41929-022-00752-z</a>","mla":"Cao, Deqing, et al. “Threshold Potentials for Fast Kinetics during Mediated Redox Catalysis of Insulators in Li–O2 and Li–S Batteries.” <i>Nature Catalysis</i>, vol. 5, Springer Nature, 2022, pp. 193–201, doi:<a href=\"https://doi.org/10.1038/s41929-022-00752-z\">10.1038/s41929-022-00752-z</a>.","ieee":"D. Cao <i>et al.</i>, “Threshold potentials for fast kinetics during mediated redox catalysis of insulators in Li–O2 and Li–S batteries,” <i>Nature Catalysis</i>, vol. 5. Springer Nature, pp. 193–201, 2022."},"publisher":"Springer Nature","corr_author":"1","date_published":"2022-03-03T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.21203/rs.3.rs-750965/v1"}],"department":[{"_id":"StFr"}],"oa_version":"Preprint","publication_identifier":{"issn":["2520-1158"]},"oa":1,"day":"03","year":"2022","status":"public","title":"Threshold potentials for fast kinetics during mediated redox catalysis of insulators in Li–O2 and Li–S batteries","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000763879400001"]},"scopus_import":"1","page":"193-201","abstract":[{"lang":"eng","text":"Redox mediators could catalyse otherwise slow and energy-inefficient cycling of Li–S and Li–O2 batteries by shuttling electrons or holes between the electrode and the solid insulating storage materials. For mediators to work efficiently they need to oxidize the solid with fast kinetics but with the lowest possible overpotential. However, the dependence of kinetics and overpotential is unclear, which hinders informed improvement. Here, we find that when the redox potentials of mediators are tuned via, for example, Li+ concentration in the electrolyte, they exhibit distinct threshold potentials, where the kinetics accelerate several-fold within a range as small as 10 mV. This phenomenon is independent of types of mediator and electrolyte. The acceleration originates from the overpotentials required to activate fast Li+/e− extraction and the following chemical step at specific abundant surface facets. Efficient redox catalysis at insulating solids therefore requires careful consideration of the surface conditions of the storage materials and electrolyte-dependent redox potentials, which may be tuned by salt concentrations or solvents."}],"_id":"10813","month":"03","type":"journal_article","quality_controlled":"1","date_updated":"2024-10-09T21:01:46Z","volume":5,"acknowledgement":"This work was financially supported by the National Natural Science Foundation of China (grant nos. 51773092, 21975124, 11874254, 51802187 and U2030206). It was further supported by Fujian science & technology innovation laboratory for energy devices of China (21C-LAB), Key Research Project of Zhejiang Laboratory (grant no. 2021PE0AC02) and the Cultivation Program for the Excellent Doctoral Dissertation of Nanjing Tech University. S.A.F. is indebted to IST Austria for support."},{"_id":"7791","month":"12","issue":"4","type":"journal_article","quality_controlled":"1","volume":8,"date_updated":"2025-04-14T07:48:36Z","acknowledgement":"AA was supported by European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 78818 Alpha). RK was supported by the Federal professorship program Grant 1.456.2016/1.4 and the Russian Foundation for Basic Research Grants 18-01-00036 and 19-01-00169. Open access funding provided by Institute of Science and Technology (IST Austria). The authors thank Alexey Balitskiy, Milena Radnović, and Serge Tabachnikov for useful discussions.","year":"2022","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"01","status":"public","arxiv":1,"external_id":{"arxiv":["1912.12685"]},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","title":"When different norms lead to same billiard trajectories?","scopus_import":"1","file_date_updated":"2020-07-14T12:48:03Z","page":"1309 - 1312","abstract":[{"text":"Extending a result of Milena Radnovic and Serge Tabachnikov, we establish conditionsfor two different non-symmetric norms to define the same billiard reflection law.","lang":"eng"}],"project":[{"_id":"266A2E9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Alpha Shape Theory Extended","grant_number":"788183"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publisher":"Springer Nature","citation":{"chicago":"Akopyan, Arseniy, and Roman Karasev. “When Different Norms Lead to Same Billiard Trajectories?” <i>European Journal of Mathematics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s40879-020-00405-0\">https://doi.org/10.1007/s40879-020-00405-0</a>.","short":"A. Akopyan, R. Karasev, European Journal of Mathematics 8 (2022) 1309–1312.","ista":"Akopyan A, Karasev R. 2022. When different norms lead to same billiard trajectories? European Journal of Mathematics. 8(4), 1309–1312.","ama":"Akopyan A, Karasev R. When different norms lead to same billiard trajectories? <i>European Journal of Mathematics</i>. 2022;8(4):1309-1312. doi:<a href=\"https://doi.org/10.1007/s40879-020-00405-0\">10.1007/s40879-020-00405-0</a>","mla":"Akopyan, Arseniy, and Roman Karasev. “When Different Norms Lead to Same Billiard Trajectories?” <i>European Journal of Mathematics</i>, vol. 8, no. 4, Springer Nature, 2022, pp. 1309–12, doi:<a href=\"https://doi.org/10.1007/s40879-020-00405-0\">10.1007/s40879-020-00405-0</a>.","apa":"Akopyan, A., &#38; Karasev, R. (2022). When different norms lead to same billiard trajectories? <i>European Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40879-020-00405-0\">https://doi.org/10.1007/s40879-020-00405-0</a>","ieee":"A. Akopyan and R. Karasev, “When different norms lead to same billiard trajectories?,” <i>European Journal of Mathematics</i>, vol. 8, no. 4. Springer Nature, pp. 1309–1312, 2022."},"corr_author":"1","date_published":"2022-12-01T00:00:00Z","ddc":["510"],"department":[{"_id":"HeEd"}],"file":[{"file_name":"2020_EuropMathematics_Akopyan.pdf","file_id":"7796","checksum":"f53e71fd03744075adcd0b8fc1b8423d","date_created":"2020-05-04T10:33:42Z","creator":"dernst","relation":"main_file","content_type":"application/pdf","file_size":263926,"date_updated":"2020-07-14T12:48:03Z","access_level":"open_access"}],"oa_version":"Published Version","publication_identifier":{"issn":["2199-675X"],"eissn":["2199-6768"]},"oa":1,"language":[{"iso":"eng"}],"author":[{"full_name":"Akopyan, Arseniy","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","last_name":"Akopyan","orcid":"0000-0002-2548-617X","first_name":"Arseniy"},{"first_name":"Roman","full_name":"Karasev, Roman","last_name":"Karasev"}],"date_created":"2020-05-03T22:00:48Z","intvolume":"         8","article_type":"original","publication_status":"published","article_processing_charge":"Yes (via OA deal)","doi":"10.1007/s40879-020-00405-0","publication":"European Journal of Mathematics","has_accepted_license":"1","ec_funded":1}]