[{"quality_controlled":"1","date_published":"2025-05-01T00:00:00Z","intvolume":" 258","publication_identifier":{"eissn":["2640-3498"]},"_id":"20303","department":[{"_id":"FrLo"}],"date_created":"2025-09-07T22:01:35Z","publisher":"ML Research Press","citation":{"ieee":"S. Huang, N. Pfister, and J. Bowden, “Sparse causal effect estimation using two-sample summary statistics in the presence of unmeasured confounding,” in The 28th International Conference on Artificial Intelligence and Statistics, Mai Khao, Thailand, 2025, vol. 258, pp. 3394–3402.","apa":"Huang, S., Pfister, N., & Bowden, J. (2025). Sparse causal effect estimation using two-sample summary statistics in the presence of unmeasured confounding. In The 28th International Conference on Artificial Intelligence and Statistics (Vol. 258, pp. 3394–3402). Mai Khao, Thailand: ML Research Press.","ama":"Huang S, Pfister N, Bowden J. Sparse causal effect estimation using two-sample summary statistics in the presence of unmeasured confounding. In: The 28th International Conference on Artificial Intelligence and Statistics. Vol 258. ML Research Press; 2025:3394-3402.","ista":"Huang S, Pfister N, Bowden J. 2025. Sparse causal effect estimation using two-sample summary statistics in the presence of unmeasured confounding. The 28th International Conference on Artificial Intelligence and Statistics. AISTATS: Conference on Artificial Intelligence and Statistics, PMLR, vol. 258, 3394–3402.","short":"S. Huang, N. Pfister, J. Bowden, in:, The 28th International Conference on Artificial Intelligence and Statistics, ML Research Press, 2025, pp. 3394–3402.","mla":"Huang, Shimeng, et al. “Sparse Causal Effect Estimation Using Two-Sample Summary Statistics in the Presence of Unmeasured Confounding.” The 28th International Conference on Artificial Intelligence and Statistics, vol. 258, ML Research Press, 2025, pp. 3394–402.","chicago":"Huang, Shimeng, Niklas Pfister, and Jack Bowden. “Sparse Causal Effect Estimation Using Two-Sample Summary Statistics in the Presence of Unmeasured Confounding.” In The 28th International Conference on Artificial Intelligence and Statistics, 258:3394–3402. ML Research Press, 2025."},"status":"public","month":"05","page":"3394-3402","acknowledgement":"The authors would like to thank Stephen Burgess and Ashish Patel for helpful discussions at\r\nthe start of this research project, and Anton Rask Lundborg for helpful discussions on the\r\nuniform asymptotic results. This work was partially completed during SH’s research visit at\r\nNovo Nordisk. The authors would like to thank Jesper Ferkinghoff-Borg, Kang Li and Lewis\r\nMarsh for facilitating this visit and for discussing necessary concepts and tools in statistical\r\ngenetics at an early stage. SH and NP are supported by a research grant (0069071) from Novo\r\nNordisk Fonden. JB is funded at the University of Exeter by research grant MR/X011372/1.","OA_place":"repository","author":[{"full_name":"Huang, Shimeng","id":"989c2a06-fb4e-11ef-a992-ab766442255b","orcid":"0000-0001-6919-821X","first_name":"Shimeng","last_name":"Huang"},{"full_name":"Pfister, Niklas","last_name":"Pfister","first_name":"Niklas"},{"full_name":"Bowden, Jack","first_name":"Jack","last_name":"Bowden"}],"external_id":{"arxiv":["2410.12300"]},"arxiv":1,"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-09-09T07:47:13Z","type":"conference","publication":"The 28th International Conference on Artificial Intelligence and Statistics","scopus_import":"1","article_processing_charge":"No","OA_type":"green","conference":{"start_date":"2025-05-03","name":"AISTATS: Conference on Artificial Intelligence and Statistics","location":"Mai Khao, Thailand","end_date":"2025-05-05"},"day":"01","oa":1,"volume":258,"title":"Sparse causal effect estimation using two-sample summary statistics in the presence of unmeasured confounding","year":"2025","alternative_title":["PMLR"],"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Observational genome-wide association studies are now widely used for causal inference in genetic epidemiology. To maintain privacy, such data is often only publicly available as summary statistics, and often studies for the endogenous covariates and the outcome are available separately. This has necessitated methods tailored to two-sample summary statistics. Current state-of-the-art methods modify linear instrumental variable (IV) regression---with genetic variants as instruments---to account for unmeasured confounding. However, since the endogenous covariates can be high dimensional, standard IV assumptions are generally insufficient to identify all causal effects simultaneously. We ensure identifiability by assuming the causal effects are sparse and propose a sparse causal effect two-sample IV estimator, spaceTSIV, adapting the spaceIV estimator by Pfister and Peters (2022) for two-sample summary statistics. We provide two methods, based on L0- and L1-penalization, respectively. We prove identifiability of the sparse causal effects in the two-sample setting and consistency of spaceTSIV. The performance of spaceTSIV is compared with existing two-sample IV methods in simulations. Finally, we showcase our methods using real proteomic and gene-expression data for drug-target discovery."}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2410.12300","open_access":"1"}],"publication_status":"published"},{"date_updated":"2025-12-30T10:16:52Z","publication":"Soft Matter","type":"journal_article","ddc":["540"],"scopus_import":"1","article_processing_charge":"Yes (via OA deal)","article_type":"original","day":"28","OA_type":"hybrid","oa":1,"volume":21,"title":"A tutorial for mesoscale computer simulations of lipid membranes: Tether pulling, tubulation and fluctuations","year":"2025","language":[{"iso":"eng"}],"corr_author":"1","abstract":[{"lang":"eng","text":"Lipid membranes and membrane deformations are a long-standing area of research in soft matter and biophysics. Computer simulations have complemented analytical and experimental approaches as one of the pillars in the field. However, setting up and using membrane simulations can come with barriers due to the multidisciplinary effort involved and the vast choice of existing simulations models. In this review, we introduce the non-expert reader to coarse-grained membrane simulations at the mesoscale. Firstly, we give a concise overview of the modelling approaches to study fluid membranes, together with guidance to more specialized references. Secondly, we provide a conceptual guide on how to develop mesoscale membrane simulations. Lastly, we construct a hands-on tutorial on how to apply mesoscale membrane simulations, by providing a pedagogical examination of membrane tether pulling, shape and mechanics of membrane tubes, and membrane fluctuations with three different membrane models, and discussing them in terms of their scope and how resource-intensive they are. To ease the reader's venture into the field, we provide a repository with ready-to-run tutorials."}],"file_date_updated":"2025-12-30T10:16:40Z","ec_funded":1,"doi":"10.1039/d5sm00148j","publication_status":"published","project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413"},{"grant_number":"802960","_id":"eba2549b-77a9-11ec-83b8-a81e493eae4e","name":"Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines","call_identifier":"H2020"},{"name":"NOMIS Fellowship Program","_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A"},{"grant_number":"96752","name":"The evolution of trafficking: from archaea to eukaryotes","_id":"eba0f67c-77a9-11ec-83b8-cc8501b3e222"}],"quality_controlled":"1","date_published":"2025-07-28T00:00:00Z","issue":"40","publication_identifier":{"issn":["1744-683X"],"eissn":["1744-6848"]},"intvolume":" 21","_id":"20318","date_created":"2025-09-10T05:34:36Z","department":[{"_id":"AnSa"}],"publisher":"Royal Society of Chemistry","citation":{"chicago":"Muñoz Basagoiti, Maitane, Felix F Frey, Billie Meadowcroft, Miguel Santana de Freitas Amaral, Adam Prada, and Anđela Šarić. “A Tutorial for Mesoscale Computer Simulations of Lipid Membranes: Tether Pulling, Tubulation and Fluctuations.” Soft Matter. Royal Society of Chemistry, 2025. https://doi.org/10.1039/d5sm00148j.","short":"M. Muñoz Basagoiti, F.F. Frey, B. Meadowcroft, M. Santana de Freitas Amaral, A. Prada, A. Šarić, Soft Matter 21 (2025) 7736–7756.","mla":"Muñoz Basagoiti, Maitane, et al. “A Tutorial for Mesoscale Computer Simulations of Lipid Membranes: Tether Pulling, Tubulation and Fluctuations.” Soft Matter, vol. 21, no. 40, Royal Society of Chemistry, 2025, pp. 7736–56, doi:10.1039/d5sm00148j.","ista":"Muñoz Basagoiti M, Frey FF, Meadowcroft B, Santana de Freitas Amaral M, Prada A, Šarić A. 2025. A tutorial for mesoscale computer simulations of lipid membranes: Tether pulling, tubulation and fluctuations. Soft Matter. 21(40), 7736–7756.","ama":"Muñoz Basagoiti M, Frey FF, Meadowcroft B, Santana de Freitas Amaral M, Prada A, Šarić A. A tutorial for mesoscale computer simulations of lipid membranes: Tether pulling, tubulation and fluctuations. Soft Matter. 2025;21(40):7736-7756. doi:10.1039/d5sm00148j","apa":"Muñoz Basagoiti, M., Frey, F. F., Meadowcroft, B., Santana de Freitas Amaral, M., Prada, A., & Šarić, A. (2025). A tutorial for mesoscale computer simulations of lipid membranes: Tether pulling, tubulation and fluctuations. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/d5sm00148j","ieee":"M. Muñoz Basagoiti, F. F. Frey, B. Meadowcroft, M. Santana de Freitas Amaral, A. Prada, and A. Šarić, “A tutorial for mesoscale computer simulations of lipid membranes: Tether pulling, tubulation and fluctuations,” Soft Matter, vol. 21, no. 40. Royal Society of Chemistry, pp. 7736–7756, 2025."},"status":"public","month":"07","page":"7736-7756","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"acknowledgement":"We thank Oded Farago, Angelo Cacciuto, Jeriann Beiter and Pietro Sillano for helpful discussions and a critical reading of the manuscript. MMB and AP acknowledge funding by the European Unions Horizon 2020 research and innovation programme under Marie Skłodowska-Curie Grant Agreement No. 101034413. FF acknowledges financial support by the NOMIS foundation. BM and AŠ acknowledge funding by ERC Starting Grant “NEPA” 802960. MA and AŠ acknowledge funding by the Volkswagen Foundation Grant Az 96727.","has_accepted_license":"1","file":[{"date_created":"2025-12-30T10:16:40Z","relation":"main_file","access_level":"open_access","checksum":"590bedad19b6f6d40a7ee036a056a6d9","success":1,"file_size":4841140,"file_name":"2025_SoftMatter_MunozBasagoiti.pdf","date_updated":"2025-12-30T10:16:40Z","file_id":"20912","creator":"dernst","content_type":"application/pdf"}],"OA_place":"publisher","isi":1,"author":[{"id":"1a8a7950-82cd-11ed-bd4f-9624c913a607","full_name":"Muñoz Basagoiti, Maitane","orcid":"0000-0003-1483-1457","first_name":"Maitane","last_name":"Muñoz Basagoiti"},{"full_name":"Frey, Felix F","id":"a0270b37-8f1a-11ec-95c7-8e710c59a4f3","orcid":"0000-0001-8501-6017","first_name":"Felix F","last_name":"Frey"},{"id":"a4725fd6-932b-11ed-81e2-c098c7f37ae1","full_name":"Meadowcroft, Billie","orcid":"0000-0003-3441-1337","last_name":"Meadowcroft","first_name":"Billie"},{"full_name":"Santana de Freitas Amaral, Miguel","id":"4f2d02dd-47a9-11ec-ad10-82820ed3f501","first_name":"Miguel","last_name":"Santana de Freitas Amaral"},{"first_name":"Adam","last_name":"Prada","id":"a43ed60a-dd22-11ed-9bf7-b34133792ea9","full_name":"Prada, Adam"},{"first_name":"Anđela","last_name":"Šarić","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","full_name":"Šarić, Anđela"}],"external_id":{"isi":["001562846800001"],"arxiv":["2502.09798"]},"arxiv":1,"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"status":"public","month":"09","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"department":[{"_id":"CaMu"}],"date_created":"2025-09-10T05:36:16Z","publisher":"Wiley","citation":{"apa":"GOSWAMI, B. B., Polesello, A., & Muller, C. J. (2025). An assessment of representing land‐ocean heterogeneity via CAPE relaxation timescale in the Community Atmospheric Model 6 (CAM6). Journal of Advances in Modeling Earth Systems. Wiley. https://doi.org/10.1029/2025ms005035","ama":"GOSWAMI BB, Polesello A, Muller CJ. An assessment of representing land‐ocean heterogeneity via CAPE relaxation timescale in the Community Atmospheric Model 6 (CAM6). Journal of Advances in Modeling Earth Systems. 2025;17(9). doi:10.1029/2025ms005035","ieee":"B. B. GOSWAMI, A. Polesello, and C. J. Muller, “An assessment of representing land‐ocean heterogeneity via CAPE relaxation timescale in the Community Atmospheric Model 6 (CAM6),” Journal of Advances in Modeling Earth Systems, vol. 17, no. 9. Wiley, 2025.","mla":"GOSWAMI, BIDYUT B., et al. “An Assessment of Representing Land‐ocean Heterogeneity via CAPE Relaxation Timescale in the Community Atmospheric Model 6 (CAM6).” Journal of Advances in Modeling Earth Systems, vol. 17, no. 9, e2025MS005035, Wiley, 2025, doi:10.1029/2025ms005035.","short":"B.B. GOSWAMI, A. Polesello, C.J. Muller, Journal of Advances in Modeling Earth Systems 17 (2025).","ista":"GOSWAMI BB, Polesello A, Muller CJ. 2025. An assessment of representing land‐ocean heterogeneity via CAPE relaxation timescale in the Community Atmospheric Model 6 (CAM6). Journal of Advances in Modeling Earth Systems. 17(9), e2025MS005035.","chicago":"GOSWAMI, BIDYUT B, Andrea Polesello, and Caroline J Muller. “An Assessment of Representing Land‐ocean Heterogeneity via CAPE Relaxation Timescale in the Community Atmospheric Model 6 (CAM6).” Journal of Advances in Modeling Earth Systems. Wiley, 2025. https://doi.org/10.1029/2025ms005035."},"issue":"9","intvolume":" 17","publication_identifier":{"eissn":["1942-2466"]},"_id":"20319","quality_controlled":"1","project":[{"name":"Organization of CLoUdS, and implications of Tropical cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576","call_identifier":"H2020","grant_number":"805041"}],"date_published":"2025-09-01T00:00:00Z","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_place":"publisher","author":[{"first_name":"BIDYUT B","last_name":"GOSWAMI","id":"3a4ac09c-6d61-11ec-bf66-884cde66b64b","full_name":"GOSWAMI, BIDYUT B","orcid":"0000-0001-8602-3083"},{"full_name":"Polesello, Andrea","id":"74c777f4-32da-11ee-b498-874db0835561","last_name":"Polesello","first_name":"Andrea"},{"first_name":"Caroline J","last_name":"Muller","full_name":"Muller, Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","orcid":"0000-0001-5836-5350"}],"DOAJ_listed":"1","acknowledgement":"The authors gratefully acknowledge funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant 805041). This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing (SciComp). We would like to thank Prof. Courtney Schumacher and Dr. Aaron Funk of Texas A&M University for their help in understanding the TRMM Radar data. The authors are grateful to two anonymous reviewers who helped improve the quality of this paper.","has_accepted_license":"1","file":[{"date_created":"2025-09-10T08:12:34Z","access_level":"open_access","relation":"main_file","file_name":"2025_JAMES_Goswami.pdf","file_size":2143025,"success":1,"checksum":"5961d6290432c5ac0e8587ef07f30c9b","file_id":"20338","date_updated":"2025-09-10T08:12:34Z","creator":"dernst","content_type":"application/pdf"}],"article_processing_charge":"Yes","article_type":"original","ddc":["550"],"scopus_import":"1","date_updated":"2025-09-10T08:14:28Z","publication":"Journal of Advances in Modeling Earth Systems","type":"journal_article","doi":"10.1029/2025ms005035","publication_status":"published","file_date_updated":"2025-09-10T08:12:34Z","ec_funded":1,"language":[{"iso":"eng"}],"article_number":"e2025MS005035","acknowledged_ssus":[{"_id":"ScienComp"}],"corr_author":"1","abstract":[{"text":"The time needed by deep convection to bring the atmosphere back to equilibrium is called convective adjustment timescale or simply adjustment timescale, typically denoted by . In the Community Atmospheric Model|Community Atmosphere Model (CAM), is the convective available potential energy (CAPE) relaxation timescale and is 1 hr, worldwide. Observational evidence suggests that is generally longer than 1 hr. Further, continental and oceanic convection are different in terms of the vigor of updrafts and can have different longevities. So using hour worldwide in CAM has two potential caveats. A longer improves the simulation of the mean climate. However, it does not address the land‐ocean heterogeneity of atmospheric deep convection. We investigate the prescription of two different CAPE relaxation timescales for land ( hr) and ocean ( to 4 hr). It is arguably an extremely crude parameterization of boundary layer control on atmospheric convection. We contrast a suite of 5‐year‐long simulations with two different for land and ocean to having one globally. The choice of longer over ocean is guided by previous studies and inspired by observational pieces of evidence. Nonetheless, to complement our variable experiments, we perform a simulation with hr and hrs. Most importantly, our key findings are immune to the exact values of prescribed and . The CAM model, with two values , improves convective‐stratiform rainfall partitioning and the Madden–Julian oscillation propagation characteristics.","lang":"eng"}],"day":"01","OA_type":"gold","oa":1,"title":"An assessment of representing land‐ocean heterogeneity via CAPE relaxation timescale in the Community Atmospheric Model 6 (CAM6)","volume":17,"year":"2025"},{"type":"journal_article","publication":"European Journal of Combinatorics","date_updated":"2025-12-30T10:19:10Z","PlanS_conform":"1","scopus_import":"1","ddc":["500"],"article_type":"original","article_processing_charge":"Yes (via OA deal)","year":"2025","title":"Beyond the pseudoforest strong Nine Dragon Tree theorem","volume":130,"oa":1,"OA_type":"hybrid","day":"01","corr_author":"1","abstract":[{"lang":"eng","text":"The pseudoforest version of the Strong Nine Dragon Tree Conjecture states that if a graph G has maximum average degree mad(G) = 2 maxH⊆G e(H)/v(H) at most 2(k + d/d+k+1), then it has a decomposition into k + 1 pseudoforests where in one pseudoforest F the components of F have at most d edges. This was proven in 2020 in Grout and Moore (2020). We strengthen this\r\ntheorem by showing that we can find such a decomposition where additionally F is acyclic, the diameter of the components of F is at most 2ℓ + 2, where ℓ =⌊d−1/k+1⌋, and at most 2ℓ + 1 if\r\nd ≡ 1 mod (k + 1). Furthermore, for any component K of F and any z ∈ N, we have diam(K) ≤ 2z if e(K) ≥ d − z(k − 1) + 1. We also show that both diameter bounds are best possible as an\r\nextension for both the Strong Nine Dragon Tree Conjecture for pseudoforests and its original conjecture for forests. In fact, they are still optimal even if we only enforce F to have any constant maximum degree, instead of enforcing every component of F to have at most d edges."}],"language":[{"iso":"eng"}],"article_number":"104214","file_date_updated":"2025-12-30T10:18:56Z","publication_status":"published","doi":"10.1016/j.ejc.2025.104214","date_published":"2025-12-01T00:00:00Z","quality_controlled":"1","_id":"20320","issue":"12","intvolume":" 130","publication_identifier":{"issn":["0195-6698"]},"publisher":"Elsevier","citation":{"ieee":"S. Mies, B. Moore, and E. Smith-Roberge, “Beyond the pseudoforest strong Nine Dragon Tree theorem,” European Journal of Combinatorics, vol. 130, no. 12. Elsevier, 2025.","apa":"Mies, S., Moore, B., & Smith-Roberge, E. (2025). Beyond the pseudoforest strong Nine Dragon Tree theorem. European Journal of Combinatorics. Elsevier. https://doi.org/10.1016/j.ejc.2025.104214","ama":"Mies S, Moore B, Smith-Roberge E. Beyond the pseudoforest strong Nine Dragon Tree theorem. European Journal of Combinatorics. 2025;130(12). doi:10.1016/j.ejc.2025.104214","chicago":"Mies, Sebastian, Benjamin Moore, and Evelyne Smith-Roberge. “Beyond the Pseudoforest Strong Nine Dragon Tree Theorem.” European Journal of Combinatorics. Elsevier, 2025. https://doi.org/10.1016/j.ejc.2025.104214.","mla":"Mies, Sebastian, et al. “Beyond the Pseudoforest Strong Nine Dragon Tree Theorem.” European Journal of Combinatorics, vol. 130, no. 12, 104214, Elsevier, 2025, doi:10.1016/j.ejc.2025.104214.","short":"S. Mies, B. Moore, E. Smith-Roberge, European Journal of Combinatorics 130 (2025).","ista":"Mies S, Moore B, Smith-Roberge E. 2025. Beyond the pseudoforest strong Nine Dragon Tree theorem. European Journal of Combinatorics. 130(12), 104214."},"date_created":"2025-09-10T05:36:50Z","department":[{"_id":"MaKw"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"month":"12","status":"public","file":[{"relation":"main_file","access_level":"open_access","date_created":"2025-12-30T10:18:56Z","success":1,"checksum":"b1536e9256c4510a0e21452032e43a26","file_size":737845,"file_name":"2025_EuropJournCombinatorics_Mies.pdf","file_id":"20913","date_updated":"2025-12-30T10:18:56Z","content_type":"application/pdf","creator":"dernst"}],"has_accepted_license":"1","acknowledgement":"This work was completed while Benjamin Moore was a postdoc at Charles University, supported by project 22-17398S (Flows and cycles in graphs on surfaces) of Czech Science Foundation, Czechia.","arxiv":1,"external_id":{"isi":["001529769300002"],"arxiv":["2310.00931"]},"author":[{"full_name":"Mies, Sebastian","last_name":"Mies","first_name":"Sebastian"},{"full_name":"Moore, Benjamin","id":"6dc1a1be-bf1c-11ed-8d2b-d044840f49d6","first_name":"Benjamin","last_name":"Moore"},{"first_name":"Evelyne","last_name":"Smith-Roberge","full_name":"Smith-Roberge, Evelyne"}],"OA_place":"publisher","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version"},{"department":[{"_id":"PaSc"},{"_id":"NMR"}],"date_created":"2025-09-10T05:37:19Z","publisher":"American Chemical Society","citation":{"ieee":"B. Tatman et al., “Bumps on the road: The way to clean relaxation dispersion magic-angle spinning NMR,” Journal of the American Chemical Society, vol. 147, no. 32. American Chemical Society, pp. 29315–29326, 2025.","apa":"Tatman, B., Sridharan, V., Uttarkabat, M., Jaroniec, C. P., Ernst, M., Rovo, P., & Schanda, P. (2025). Bumps on the road: The way to clean relaxation dispersion magic-angle spinning NMR. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.5c09057","ama":"Tatman B, Sridharan V, Uttarkabat M, et al. Bumps on the road: The way to clean relaxation dispersion magic-angle spinning NMR. Journal of the American Chemical Society. 2025;147(32):29315-29326. doi:10.1021/jacs.5c09057","mla":"Tatman, Benjamin, et al. “Bumps on the Road: The Way to Clean Relaxation Dispersion Magic-Angle Spinning NMR.” Journal of the American Chemical Society, vol. 147, no. 32, American Chemical Society, 2025, pp. 29315–26, doi:10.1021/jacs.5c09057.","short":"B. Tatman, V. Sridharan, M. Uttarkabat, C.P. Jaroniec, M. Ernst, P. Rovo, P. Schanda, Journal of the American Chemical Society 147 (2025) 29315–29326.","ista":"Tatman B, Sridharan V, Uttarkabat M, Jaroniec CP, Ernst M, Rovo P, Schanda P. 2025. Bumps on the road: The way to clean relaxation dispersion magic-angle spinning NMR. Journal of the American Chemical Society. 147(32), 29315–29326.","chicago":"Tatman, Benjamin, Vidhyalakshmi Sridharan, Motilal Uttarkabat, Christopher P. Jaroniec, Matthias Ernst, Petra Rovo, and Paul Schanda. “Bumps on the Road: The Way to Clean Relaxation Dispersion Magic-Angle Spinning NMR.” Journal of the American Chemical Society. American Chemical Society, 2025. https://doi.org/10.1021/jacs.5c09057."},"month":"08","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":"29315-29326","quality_controlled":"1","date_published":"2025-08-01T00:00:00Z","_id":"20321","issue":"32","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"intvolume":" 147","OA_place":"publisher","isi":1,"external_id":{"isi":["001542746200001"],"pmid":["40748291"]},"pmid":1,"author":[{"id":"71cda2f3-e604-11ee-a1df-da10587eda3f","full_name":"Tatman, Benjamin","first_name":"Benjamin","last_name":"Tatman"},{"first_name":"Vidhyalakshmi","last_name":"Sridharan","full_name":"Sridharan, Vidhyalakshmi"},{"last_name":"Uttarkabat","first_name":"Motilal","full_name":"Uttarkabat, Motilal"},{"last_name":"Jaroniec","first_name":"Christopher P.","full_name":"Jaroniec, Christopher P."},{"full_name":"Ernst, Matthias","last_name":"Ernst","first_name":"Matthias"},{"last_name":"Rovo","first_name":"Petra","full_name":"Rovo, Petra","orcid":"0000-0001-8729-7326","id":"c316e53f-b965-11eb-b128-bb26acc59c00"},{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul","orcid":"0000-0002-9350-7606","last_name":"Schanda","first_name":"Paul"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Published Version","related_material":{"record":[{"status":"public","id":"19696","relation":"used_in_publication"}]},"file":[{"file_name":"2025_JACS_Tatman.pdf","checksum":"b350d56ddddefea96cebd62c277c0ff5","success":1,"file_size":5235353,"date_created":"2025-09-10T07:53:10Z","access_level":"open_access","relation":"main_file","creator":"dernst","content_type":"application/pdf","date_updated":"2025-09-10T07:53:10Z","file_id":"20337"}],"acknowledgement":"The authors thank Alexey Krushelnitsky for useful discussions. C.P.J. thanks NSF (MCB-2303862) and NIH (R35GM156238 and S10OD012303) for funding. This research was supported by the Scientific Service Units (SSU) of Institute of Science and Technology Austria (ISTA) through resources provided by the Nuclear Magnetic Resonance and the Lab Support Facilities.","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","article_type":"original","type":"journal_article","publication":"Journal of the American Chemical Society","PlanS_conform":"1","date_updated":"2026-01-28T12:36:30Z","scopus_import":"1","ddc":["540"],"file_date_updated":"2025-09-10T07:53:10Z","doi":"10.1021/jacs.5c09057","publication_status":"published","oa":1,"day":"01","OA_type":"hybrid","year":"2025","volume":147,"title":"Bumps on the road: The way to clean relaxation dispersion magic-angle spinning NMR","language":[{"iso":"eng"}],"abstract":[{"text":"Microsecond-to-millisecond motions are instrumental for many biomolecular functions, including enzymatic activity and ligand binding. Bloch-McConnell Relaxation Dispersion (BMRD) Nuclear Magnetic Resonance (NMR) spectroscopy is a key technique for studying these dynamic processes. While BMRD experiments are routinely used to probe protein motions in solution, the experiment is more demanding in the solid state, where dipolar couplings complicate the spin dynamics. It is believed that high deuteration levels are required and sufficient to obtain accurate and quantitative data. Here we show that even under fast magic-angle spinning and high levels of deuteration artifactual “bumps” in 15N R1ρ BMRD profiles are common. The origin of these artifacts is identified as a second-order three-spin Mixed Rotational and Rotary Resonance (MIRROR) recoupling condition. These artifacts are found to be a significant confounding factor for the accurate quantification of microsecond protein dynamics using BMRD in the solid state. We show that the application of low-power continuous wave (CW) decoupling simultaneously with the 15N spin-lock leads to the suppression of these conditions and enables quantitative measurements of microsecond exchange in the solid state. Remarkably, the application of decoupling allows the measurement of accurate BMRD even in fully protonated proteins at 100 kHz MAS, thus extending the scope of μs dynamics measurements in MAS NMR.","lang":"eng"}],"corr_author":"1","acknowledged_ssus":[{"_id":"NMR"},{"_id":"LifeSc"}]},{"scopus_import":"1","ddc":["510"],"type":"journal_article","publication":"Journal of Pure and Applied Algebra","date_updated":"2025-12-30T07:55:21Z","PlanS_conform":"1","article_type":"original","article_processing_charge":"Yes (via OA deal)","abstract":[{"text":"We establish several results combining discrete Morse theory and microlocal sheaf theory in the setting of finite posets and simplicial complexes. Our primary tool is a computationally tractable description of the bounded derived category of sheaves on a poset with the Alexandrov topology. We prove that each bounded complex of sheaves on a finite poset admits a unique (up to isomorphism of complexes) minimal injective resolution, and we provide algorithms for computing minimal injective resolution of an injective complex, as well as several useful functors between derived categories of sheaves. For the constant sheaf on a simplicial complex, we give asymptotically tight bounds on the complexity of computing the minimal injective resolution using those algorithms. Our main result is a novel definition of the discrete microsupport of a bounded complex of sheaves on a finite poset. We detail several foundational properties of the discrete microsupport, as well as a microlocal generalization of the discrete homological Morse theorem and Morse inequalities.","lang":"eng"}],"corr_author":"1","language":[{"iso":"eng"}],"article_number":"108068","year":"2025","volume":229,"title":"Discrete microlocal Morse theory","oa":1,"OA_type":"hybrid","day":"01","publication_status":"published","doi":"10.1016/j.jpaa.2025.108068","ec_funded":1,"file_date_updated":"2025-12-30T07:55:08Z","_id":"20323","publication_identifier":{"issn":["0022-4049"]},"issue":"10","intvolume":" 229","date_published":"2025-10-01T00:00:00Z","quality_controlled":"1","project":[{"grant_number":"788183","name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"Mathematics, Computer Science","_id":"268116B8-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"Z00342"},{"grant_number":"I02979-N35","call_identifier":"FWF","name":"Persistence and stability of geometric complexes","_id":"2561EBF4-B435-11E9-9278-68D0E5697425"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"month":"10","status":"public","publisher":"Elsevier","citation":{"mla":"Brown, Adam, and Ondrej Draganov. “Discrete Microlocal Morse Theory.” Journal of Pure and Applied Algebra, vol. 229, no. 10, 108068, Elsevier, 2025, doi:10.1016/j.jpaa.2025.108068.","short":"A. Brown, O. Draganov, Journal of Pure and Applied Algebra 229 (2025).","ista":"Brown A, Draganov O. 2025. Discrete microlocal Morse theory. Journal of Pure and Applied Algebra. 229(10), 108068.","chicago":"Brown, Adam, and Ondrej Draganov. “Discrete Microlocal Morse Theory.” Journal of Pure and Applied Algebra. Elsevier, 2025. https://doi.org/10.1016/j.jpaa.2025.108068.","ama":"Brown A, Draganov O. Discrete microlocal Morse theory. Journal of Pure and Applied Algebra. 2025;229(10). doi:10.1016/j.jpaa.2025.108068","apa":"Brown, A., & Draganov, O. (2025). Discrete microlocal Morse theory. Journal of Pure and Applied Algebra. Elsevier. https://doi.org/10.1016/j.jpaa.2025.108068","ieee":"A. Brown and O. Draganov, “Discrete microlocal Morse theory,” Journal of Pure and Applied Algebra, vol. 229, no. 10. Elsevier, 2025."},"date_created":"2025-09-10T05:40:09Z","department":[{"_id":"HeEd"}],"file":[{"creator":"dernst","content_type":"application/pdf","date_updated":"2025-12-30T07:55:08Z","file_id":"20886","success":1,"file_size":3090836,"checksum":"39bcad462278c9322ef810af7db67f56","file_name":"2025_JourPureAppliedAlgebra_Brown.pdf","date_created":"2025-12-30T07:55:08Z","relation":"main_file","access_level":"open_access"}],"has_accepted_license":"1","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, grant no. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z342-N31, and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"id":"18981","status":"public","relation":"earlier_version"}]},"oa_version":"Published Version","external_id":{"arxiv":["2209.14993"]},"arxiv":1,"author":[{"last_name":"Brown","first_name":"Adam","id":"70B7FDF6-608D-11E9-9333-8535E6697425","full_name":"Brown, Adam"},{"id":"2B23F01E-F248-11E8-B48F-1D18A9856A87","full_name":"Draganov, Ondrej","orcid":"0000-0003-0464-3823","last_name":"Draganov","first_name":"Ondrej"}],"OA_place":"publisher"},{"_id":"20324","publication_identifier":{"issn":["2331-7019"]},"intvolume":" 24","quality_controlled":"1","project":[{"_id":"0aa3608a-070f-11eb-9043-e9cd8a2bd931","name":"Cavity electromechanics across a quantum phase transition","grant_number":"P33692"},{"name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411"},{"_id":"eb9b30ac-77a9-11ec-83b8-871f581d53d2","name":"Protected states of quantum matter"}],"date_published":"2025-07-17T00:00:00Z","month":"07","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_created":"2025-09-10T05:41:30Z","department":[{"_id":"GradSch"},{"_id":"AnHi"}],"publisher":"American Physical Society","citation":{"ama":"Mukhopadhyay S, Lancheros Naranjo DA, Senior JL, Higginbotham AP. Dual relaxation oscillations in a Josephson-junction array. Physical Review Applied. 2025;24. doi:10.1103/qvls-7s3q","apa":"Mukhopadhyay, S., Lancheros Naranjo, D. A., Senior, J. L., & Higginbotham, A. P. (2025). Dual relaxation oscillations in a Josephson-junction array. Physical Review Applied. American Physical Society. https://doi.org/10.1103/qvls-7s3q","ieee":"S. Mukhopadhyay, D. A. Lancheros Naranjo, J. L. Senior, and A. P. Higginbotham, “Dual relaxation oscillations in a Josephson-junction array,” Physical Review Applied, vol. 24. American Physical Society, 2025.","mla":"Mukhopadhyay, Soham, et al. “Dual Relaxation Oscillations in a Josephson-Junction Array.” Physical Review Applied, vol. 24, 014035, American Physical Society, 2025, doi:10.1103/qvls-7s3q.","short":"S. Mukhopadhyay, D.A. Lancheros Naranjo, J.L. Senior, A.P. Higginbotham, Physical Review Applied 24 (2025).","ista":"Mukhopadhyay S, Lancheros Naranjo DA, Senior JL, Higginbotham AP. 2025. Dual relaxation oscillations in a Josephson-junction array. Physical Review Applied. 24, 014035.","chicago":"Mukhopadhyay, Soham, Diego A Lancheros Naranjo, Jorden L Senior, and Andrew P Higginbotham. “Dual Relaxation Oscillations in a Josephson-Junction Array.” Physical Review Applied. American Physical Society, 2025. https://doi.org/10.1103/qvls-7s3q."},"file":[{"content_type":"application/pdf","creator":"dernst","file_id":"20335","date_updated":"2025-09-10T07:29:06Z","checksum":"6cc3c9beeb7c0a88ee0a072c9a32b78b","success":1,"file_size":1370466,"file_name":"2025_PhysReviewAppl_Mukhopadhyay.pdf","relation":"main_file","access_level":"open_access","date_created":"2025-09-10T07:29:06Z"}],"has_accepted_license":"1","acknowledgement":"We gratefully acknowledge support from the Miba Machine Shop and the Nanofabrictation Facility at IST Austria. This work was supported by the Austrian FWF under Grant No. P33692-N (S.M., J.S., and A.P.H.), the European Union’s Horizon 2020 research and innovation program under Marie Skłodowska-Curie Grant Agreement No. 754411 (J.S.), and a NOMIS Foundation research grant (A.P.H.).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"relation":"earlier_version","id":"18057","status":"public"}]},"oa_version":"Published Version","isi":1,"OA_place":"publisher","arxiv":1,"external_id":{"arxiv":["2408.07829 "],"isi":["001537333100001"]},"author":[{"id":"FDE60288-A89D-11E9-947F-1AF6E5697425","orcid":"0000-0001-5263-5559","full_name":"Mukhopadhyay, Soham","last_name":"Mukhopadhyay","first_name":"Soham"},{"id":"6c55e976-15b2-11ec-abd3-d790e8937fde","full_name":"Lancheros Naranjo, Diego A","last_name":"Lancheros Naranjo","first_name":"Diego A"},{"last_name":"Senior","first_name":"Jorden L","full_name":"Senior, Jorden L","id":"5479D234-2D30-11EA-89CC-40953DDC885E","orcid":"0000-0002-0672-9295"},{"first_name":"Andrew P","last_name":"Higginbotham","orcid":"0000-0003-2607-2363","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","full_name":"Higginbotham, Andrew P"}],"scopus_import":"1","ddc":["530"],"type":"journal_article","publication":"Physical Review Applied","date_updated":"2025-12-11T10:47:34Z","PlanS_conform":"1","article_processing_charge":"Yes (via OA deal)","article_type":"original","article_number":"014035","language":[{"iso":"eng"}],"corr_author":"1","abstract":[{"lang":"eng","text":"We report relaxation oscillations in a one-dimensional array of Josephson junctions, wherein the array dynamically switches between low-current and high-current states. The oscillations are current-voltage dual to those ordinarily observed in single junctions. The current-voltage dual circuit quantitatively accounts for temporal dynamics of the array, including the dependence on biasing conditions. Injection locking of the oscillations results in well-developed current plateaux. A thermal model explains the self-consistent reduction of the superconducting gap due to overheating of the array in the high-current state. Our work suggests that overheating determines the switching from the high-current state to the low-current state."}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"oa":1,"OA_type":"hybrid","day":"17","year":"2025","volume":24,"title":"Dual relaxation oscillations in a Josephson-junction array","doi":"10.1103/qvls-7s3q","publication_status":"published","file_date_updated":"2025-09-10T07:29:06Z","ec_funded":1},{"corr_author":"1","abstract":[{"text":"Inferring genealogical relationships of wild populations is useful because it gives direct estimates of mating patterns and variance in reproductive success. Inference can be improved by including information about parentage shared between siblings, or by modelling phenotypes or population data related to mating. However, we currently lack a framework to infer parent–offspring relationships, sibships and population parameters in a single analysis. To address this, we here extend a previous method, Fractional Analysis of Paternity and Sibships, to include population data for the case where one parent is known. We illustrate this with the example of pollen dispersal in a natural hybrid zone population of the snapdragon Antirrhinum majus. Pollen dispersal is leptokurtic, with half of mating events occurring within 30 m, but with a long tail of mating events up to 859 m. Using simulations, we find that both sibship and population information substantially improve pedigree reconstruction, and that we can expect to resolve median dispersal distances with high accuracy.","lang":"eng"}],"article_number":"e70051","language":[{"iso":"eng"}],"title":"Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone","volume":34,"year":"2025","day":"02","OA_type":"hybrid","oa":1,"publication_status":"published","doi":"10.1111/mec.70051","file_date_updated":"2025-12-30T10:12:17Z","ddc":["570"],"scopus_import":"1","date_updated":"2025-12-30T10:12:34Z","publication":"Molecular Ecology","type":"journal_article","article_type":"original","article_processing_charge":"Yes (via OA deal)","acknowledgement":"We thank a large number of field volunteers for maintaining the population sampling, and Tom White for assistance with seed collection. We thank Sylvia Rebel for plating tissue for DNA extraction, as well as Sean Stankowski and two anonymous reviewers for feedback on the manuscript. ","has_accepted_license":"1","file":[{"date_updated":"2025-12-30T10:12:17Z","file_id":"20911","creator":"dernst","content_type":"application/pdf","date_created":"2025-12-30T10:12:17Z","access_level":"open_access","relation":"main_file","file_name":"2025_MolecularEcology_Ellis.pdf","checksum":"5059ad4d74e6327b84b5282a39d36774","success":1,"file_size":1698605}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"author":[{"orcid":"0000-0002-8511-0254","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","full_name":"Ellis, Thomas","last_name":"Ellis","first_name":"Thomas"},{"orcid":"0000-0002-4014-8478","id":"419049E2-F248-11E8-B48F-1D18A9856A87","full_name":"Field, David","first_name":"David","last_name":"Field"},{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H"}],"external_id":{"pmid":["40751392"],"isi":["001542913000001"]},"OA_place":"publisher","isi":1,"publication_identifier":{"eissn":["1365-294X"],"issn":["0962-1083"]},"intvolume":" 34","issue":"15","_id":"20325","date_published":"2025-09-02T00:00:00Z","quality_controlled":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"status":"public","month":"09","citation":{"chicago":"Ellis, Thomas, David Field, and Nicholas H Barton. “Joint Estimation of Paternity, Sibships and Pollen Dispersal in a Snapdragon Hybrid Zone.” Molecular Ecology. Wiley, 2025. https://doi.org/10.1111/mec.70051.","ista":"Ellis T, Field D, Barton NH. 2025. Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone. Molecular Ecology. 34(15), e70051.","mla":"Ellis, Thomas, et al. “Joint Estimation of Paternity, Sibships and Pollen Dispersal in a Snapdragon Hybrid Zone.” Molecular Ecology, vol. 34, no. 15, e70051, Wiley, 2025, doi:10.1111/mec.70051.","short":"T. Ellis, D. Field, N.H. Barton, Molecular Ecology 34 (2025).","ieee":"T. Ellis, D. Field, and N. H. Barton, “Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone,” Molecular Ecology, vol. 34, no. 15. Wiley, 2025.","ama":"Ellis T, Field D, Barton NH. Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone. Molecular Ecology. 2025;34(15). doi:10.1111/mec.70051","apa":"Ellis, T., Field, D., & Barton, N. H. (2025). Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone. Molecular Ecology. Wiley. https://doi.org/10.1111/mec.70051"},"publisher":"Wiley","department":[{"_id":"NiBa"}],"date_created":"2025-09-10T05:42:23Z"},{"ec_funded":1,"file_date_updated":"2025-09-10T06:47:23Z","publication_status":"published","doi":"10.1103/mfg2-t6gb","year":"2025","volume":112,"title":"Mass-assisted local deconfinement in a confined Z2 lattice gauge theory","oa":1,"OA_type":"hybrid","day":"01","corr_author":"1","abstract":[{"text":"Confinement is a prominent phenomenon in condensed-matter and high-energy physics that has recently become the focus of quantum-simulation experiments of lattice gauge theories (LGTs). As such, a theoretical understanding of the effect of confinement on LGT dynamics is not only of fundamental importance but also can lend itself to upcoming experiments. Here we show how confinement in a Z2 LGT can be avoided by proximity to a resonance between the fermion mass and the electric field strength. Furthermore, we show that this local deconfinement can become global for certain initial conditions, where information transport occurs over the entire chain. In addition, we show how this can lead to strong quantum many-body scarring starting in different initial states. Our findings provide deeper insights into the nature of confinement in Z2 LGTs and can be tested on current and near-term quantum devices.","lang":"eng"}],"language":[{"iso":"eng"}],"article_number":"014301","article_type":"original","article_processing_charge":"Yes (via OA deal)","type":"journal_article","publication":"Physical Review B","PlanS_conform":"1","date_updated":"2025-09-30T14:34:43Z","scopus_import":"1","ddc":["530"],"arxiv":1,"external_id":{"arxiv":["2404.11645"],"isi":["001530465500007"]},"author":[{"last_name":"Desaules","first_name":"Jean-Yves Marc","orcid":"0000-0002-3749-6375","id":"6c292945-a610-11ed-9eec-c3be1ad62a80","full_name":"Desaules, Jean-Yves Marc"},{"full_name":"Iadecola, Thomas","last_name":"Iadecola","first_name":"Thomas"},{"full_name":"Halimeh, Jad C.","last_name":"Halimeh","first_name":"Jad C."}],"OA_place":"publisher","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Published Version","related_material":{"record":[{"relation":"research_data","status":"public","id":"19791"}]},"file":[{"file_id":"20333","date_updated":"2025-09-10T06:47:23Z","creator":"dernst","content_type":"application/pdf","date_created":"2025-09-10T06:47:23Z","access_level":"open_access","relation":"main_file","file_name":"2025_PhysReviewB_Desaules.pdf","success":1,"checksum":"dd919bb9c4c233eba047af4262e02835","file_size":3458424}],"has_accepted_license":"1","acknowledgement":"The authors are grateful to Fiona Burnell, Gaurav Gyawali, Zlatko Papić, Elliot Rosenberg, Pedram Roushan, Michael Schecter, and Una Šlanka for insightful discussions. J.-Y.D. acknowledges funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant No. 101034413. T.I. acknowledges support from the National Science Foundation under Grant No. DMR-2143635. J.C.H. acknowledges funding by the Emmy Noether Programme of the German Research Foundation (DFG) under Grant No. HA 8206/1-1.s, the Max Planck Society, the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy–EXC-2111–390814868, and the European Research Council (ERC) under the European Union's Horizon Europe research and innovation program (Grant Agreement No. 101165667) ERC Starting Grant QuSiGauge. This work is part of the Quantum Computing for High-Energy Physics (QC4HEP) working group.","publisher":"American Physical Society","citation":{"ama":"Desaules J-YM, Iadecola T, Halimeh JC. Mass-assisted local deconfinement in a confined Z2 lattice gauge theory. Physical Review B. 2025;112(1). doi:10.1103/mfg2-t6gb","apa":"Desaules, J.-Y. M., Iadecola, T., & Halimeh, J. C. (2025). Mass-assisted local deconfinement in a confined Z2 lattice gauge theory. Physical Review B. American Physical Society. https://doi.org/10.1103/mfg2-t6gb","ieee":"J.-Y. M. Desaules, T. Iadecola, and J. C. Halimeh, “Mass-assisted local deconfinement in a confined Z2 lattice gauge theory,” Physical Review B, vol. 112, no. 1. American Physical Society, 2025.","mla":"Desaules, Jean-Yves Marc, et al. “Mass-Assisted Local Deconfinement in a Confined Z2 Lattice Gauge Theory.” Physical Review B, vol. 112, no. 1, 014301, American Physical Society, 2025, doi:10.1103/mfg2-t6gb.","short":"J.-Y.M. Desaules, T. Iadecola, J.C. Halimeh, Physical Review B 112 (2025).","ista":"Desaules J-YM, Iadecola T, Halimeh JC. 2025. Mass-assisted local deconfinement in a confined Z2 lattice gauge theory. Physical Review B. 112(1), 014301.","chicago":"Desaules, Jean-Yves Marc, Thomas Iadecola, and Jad C. Halimeh. “Mass-Assisted Local Deconfinement in a Confined Z2 Lattice Gauge Theory.” Physical Review B. American Physical Society, 2025. https://doi.org/10.1103/mfg2-t6gb."},"department":[{"_id":"MaSe"}],"date_created":"2025-09-10T05:44:47Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"month":"07","status":"public","date_published":"2025-07-01T00:00:00Z","project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","grant_number":"101034413"}],"quality_controlled":"1","_id":"20327","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"issue":"1","intvolume":" 112"},{"month":"09","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":" 31969–32051","date_created":"2025-09-10T05:47:13Z","department":[{"_id":"MaIb"}],"publisher":"American Chemical Society","citation":{"chicago":"Ibáñez, Maria, Simon C. Boehme, Raffaella Buonsanti, Jonathan De Roo, Delia J. Milliron, Sandrine Ithurria, Andrey L. Rogach, et al. “Prospects of Nanoscience with Nanocrystals: 2025 Edition.” ACS Nano. American Chemical Society, 2025. https://doi.org/10.1021/acsnano.5c07838.","short":"M. Ibáñez, S.C. Boehme, R. Buonsanti, J. De Roo, D.J. Milliron, S. Ithurria, A.L. Rogach, A. Cabot, M. Yarema, B.M. Cossairt, P. Reiss, D.V. Talapin, L. Protesescu, Z. Hens, I. Infante, M.I. Bodnarchuk, X. Ye, Y. Wang, H. Zhang, E. Lhuillier, V.I. Klimov, H. Utzat, G. Rainò, C.R. Kagan, M. Cargnello, J.S. Son, M.V. Kovalenko, ACS Nano 19 (2025) 31969–32051.","mla":"Ibáñez, Maria, et al. “Prospects of Nanoscience with Nanocrystals: 2025 Edition.” ACS Nano, vol. 19, no. 36, American Chemical Society, 2025, pp. 31969–32051, doi:10.1021/acsnano.5c07838.","ista":"Ibáñez M, Boehme SC, Buonsanti R, De Roo J, Milliron DJ, Ithurria S, Rogach AL, Cabot A, Yarema M, Cossairt BM, Reiss P, Talapin DV, Protesescu L, Hens Z, Infante I, Bodnarchuk MI, Ye X, Wang Y, Zhang H, Lhuillier E, Klimov VI, Utzat H, Rainò G, Kagan CR, Cargnello M, Son JS, Kovalenko MV. 2025. Prospects of nanoscience with nanocrystals: 2025 edition. ACS Nano. 19(36), 31969–32051.","ieee":"M. Ibáñez et al., “Prospects of nanoscience with nanocrystals: 2025 edition,” ACS Nano, vol. 19, no. 36. American Chemical Society, pp. 31969–32051, 2025.","ama":"Ibáñez M, Boehme SC, Buonsanti R, et al. Prospects of nanoscience with nanocrystals: 2025 edition. ACS Nano. 2025;19(36):31969–32051. doi:10.1021/acsnano.5c07838","apa":"Ibáñez, M., Boehme, S. C., Buonsanti, R., De Roo, J., Milliron, D. J., Ithurria, S., … Kovalenko, M. V. (2025). Prospects of nanoscience with nanocrystals: 2025 edition. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.5c07838"},"_id":"20329","publication_identifier":{"eissn":["1936-086X"],"issn":["1936-0851"]},"issue":"36","intvolume":" 19","quality_controlled":"1","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"date_published":"2025-09-03T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","OA_place":"publisher","isi":1,"external_id":{"pmid":["40902118"],"isi":["001562960800001"]},"author":[{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","first_name":"Maria","last_name":"Ibáñez"},{"last_name":"Boehme","first_name":"Simon C.","full_name":"Boehme, Simon C."},{"last_name":"Buonsanti","first_name":"Raffaella","full_name":"Buonsanti, Raffaella"},{"full_name":"De Roo, Jonathan","last_name":"De Roo","first_name":"Jonathan"},{"last_name":"Milliron","first_name":"Delia J.","full_name":"Milliron, Delia J."},{"last_name":"Ithurria","first_name":"Sandrine","full_name":"Ithurria, Sandrine"},{"first_name":"Andrey L.","last_name":"Rogach","full_name":"Rogach, Andrey L."},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"},{"full_name":"Yarema, Maksym","last_name":"Yarema","first_name":"Maksym"},{"full_name":"Cossairt, Brandi M.","first_name":"Brandi M.","last_name":"Cossairt"},{"first_name":"Peter","last_name":"Reiss","full_name":"Reiss, Peter"},{"full_name":"Talapin, Dmitri V.","first_name":"Dmitri V.","last_name":"Talapin"},{"full_name":"Protesescu, Loredana","last_name":"Protesescu","first_name":"Loredana"},{"last_name":"Hens","first_name":"Zeger","full_name":"Hens, Zeger"},{"full_name":"Infante, Ivan","first_name":"Ivan","last_name":"Infante"},{"full_name":"Bodnarchuk, Maryna I.","last_name":"Bodnarchuk","first_name":"Maryna I."},{"last_name":"Ye","first_name":"Xingchen","full_name":"Ye, Xingchen"},{"full_name":"Wang, Yuanyuan","last_name":"Wang","first_name":"Yuanyuan"},{"first_name":"Hao","last_name":"Zhang","full_name":"Zhang, Hao"},{"first_name":"Emmanuel","last_name":"Lhuillier","full_name":"Lhuillier, Emmanuel"},{"full_name":"Klimov, Victor I.","last_name":"Klimov","first_name":"Victor I."},{"full_name":"Utzat, Hendrik","first_name":"Hendrik","last_name":"Utzat"},{"last_name":"Rainò","first_name":"Gabriele","full_name":"Rainò, Gabriele"},{"last_name":"Kagan","first_name":"Cherie R.","full_name":"Kagan, Cherie R."},{"first_name":"Matteo","last_name":"Cargnello","full_name":"Cargnello, Matteo"},{"last_name":"Son","first_name":"Jae Sung","full_name":"Son, Jae Sung"},{"first_name":"Maksym V.","last_name":"Kovalenko","full_name":"Kovalenko, Maksym V."}],"pmid":1,"file":[{"content_type":"application/pdf","creator":"dernst","date_updated":"2025-12-30T09:35:44Z","file_id":"20909","file_name":"2025_ACSNano_Ibanez.pdf","success":1,"file_size":10956272,"checksum":"81144f848478a130721e9ffa87b6831e","access_level":"open_access","relation":"main_file","date_created":"2025-12-30T09:35:44Z"}],"acknowledgement":"This article was inspired by the discussions and presentations at the NaNaX10 (Nanoscience with Nanocrystals) conference held in the Institute of Science and Technology of Austria (ISTA), July 3–7, 2023. M.I. acknowledges financial support from the Werner Siemens Foundation (WSS) and Abayomi Lawal, Christine Fiedler, Ihor Cherniukh, Francesco Milillo, Navita Jakhar, and Magali Lorion for all their help in editing this manuscript. M.I. would also like to acknowledge Christine Fiedler for the design of the TOC. S.C.B. acknowledges Dr. Dmitry Dirin for proofreading and the Weizmann-ETH Zurich Bridge Program for financial support. A.C. thanks Linlin Yang for drafting Figure 6 and acknowledges support from the project Sydecat with reference PID2022-136883OB-C22 under MCIN/AEI/10.13039/501100011033/FEDER, UE, and to the Departament de Recerca i Universitats of the Generalitat de Catalunya (2021 SGR 01581). M.C. acknowledges support from the Sloan Foundation, BASF Corporation, the Novo Nordisk Foundation CO2 Research Center (CORC), and the US Department of Energy, Chemical Sciences, Geosciences and Biosciences Division of the Office of Basic Energy Sciences, via the SUNCAT Center for Interface Science and Catalysis. D.V.T. acknowledges support from the U.S. National Science Foundation under Grant Number CHE-2404291. V.I.K. acknowledges support by the Solar Photochemistry Program of the Chemical Sciences, Biosciences and Geosciences Division, Office of Basic Energy Sciences, Office of Science, U.S. Department of Energy (overview of studies of spin-exchange interactions in Mn-doped QDs) and the Laboratory Directed Research and Development (LDRD) program at Los Alamos National Laboratory under project 20250443ER (overview of QD optical gain and lasing studies). E.L. acknowledges financial from the ERC grant blackQD (grant no. 756225) and AQDtive (grant no. 101086358), and from French state funds managed by the ANR through the grants Bright (ANR-21-CE24-0012-02), MixDferro (ANR-21-CE09-0029), Quicktera (ANR-22-CE09-0018), E-map (ANR-23-CE50-0025), DIRAC (ANR-24-ASM1-0001), camIR (ANR-24-CE42-2757), and Piquant (ANR-24-CE09-0786). L.P. acknowledges financial support from SOLAR NL, funded by the National Growth Fund in The Netherlands. G.R. acknowledges funding from the Swiss National Science Foundation (Grant No. 200021_192308, “Q-Light─Engineered Quantum Light Sources with Nanocrystal Assemblies”). P.R. acknowledges funding from European Union’s Horizon research and innovation program under grant agreement 101135704 (HortiQD project) and from the French Research Agency ANR (grant ANR-24-CE09-0786-01 PIQUANT). A.L.R. acknowledges financial support from the Innovation and Technology Commission of Hong Kong (ITS/027/22MX), and from the Research Grant Council of Hong Kong SAR through the RGC Senior Research Fellow Scheme (SRFS 2324-1S04). J.S.S. acknowledges financial support from the National Research Foundation of Korea (NRF) grant funded by the Ministry of Science and ICT (2022R1A2C3009129). X.Y. acknowledges support from the U.S. National Science Foundation under awards DMR-2102526 and CBET-2223453. Y.W. acknowledges the support from the Science and Technology Program in Jiangsu Province (BK20232041) and the National Natural Science Foundation of China (22171132 and 52472165). M.Y. acknowledges funding by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, grant agreement No. 852751. I.I., Z.H. and M.K acknowledge the European Commission for funding (MSCA-DN Track The Twin, grant agreement 101168820). Z.H. acknowledges funding from the FWO-Vlaanderen (research projects G0B2921N and G0C5723N) and Ghent University (BOF-GOA 01G02124). H.Z. acknowledges W. Liu for editing Figure 19 and the financial support from Beijing Natural Science Foundation (JQ24003).","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","article_type":"review","scopus_import":"1","ddc":["540"],"publication":"ACS Nano","type":"journal_article","PlanS_conform":"1","date_updated":"2025-12-30T09:35:54Z","doi":"10.1021/acsnano.5c07838","publication_status":"published","file_date_updated":"2025-12-30T09:35:44Z","language":[{"iso":"eng"}],"abstract":[{"text":"Nanocrystals (NCs) of various compositions have made important contributions to science and technology, with their impact recognized by the 2023 Nobel Prize in Chemistry for the discovery and synthesis of semiconductor quantum dots (QDs). Over four decades of research into NCs has led to numerous advancements in diverse fields, such as optoelectronics, catalysis, energy, medicine, and recently, quantum information and computing. The last 10 years since the predecessor perspective “Prospect of Nanoscience with Nanocrystals” was published in ACS Nano have seen NC research continuously evolve, yielding critical advances in fundamental understanding and practical applications. Mechanistic insights into NC formation have translated into precision control over NC size, shape, and composition. Emerging synthesis techniques have broadened the landscape of compounds obtainable in colloidal NC form. Sophistication in surface chemistry, jointly bolstered by theoretical models and experimental findings, has facilitated refined control over NC properties and represents a trusted gateway to enhanced NC stability and processability. The assembly of NCs into superlattices, along with two-dimensional (2D) photolithography and three-dimensional (3D) printing, has expanded their utility in creating materials with tailored properties. Applications of NCs are also flourishing, consolidating progress in fields targeted early on, such as optoelectronics and catalysis, and extending into areas ranging from quantum technology to phase-change memories. In this perspective, we review the extensive progress in research on NCs over the past decade and highlight key areas where future research may bring further breakthroughs.","lang":"eng"}],"corr_author":"1","oa":1,"day":"03","OA_type":"hybrid","year":"2025","title":"Prospects of nanoscience with nanocrystals: 2025 edition","volume":19},{"publisher":"Oxford University Press","citation":{"ista":"Puixeu Sala G, Hayward L. 2025. The relationship between sexual dimorphism and intersex correlation: Do models support intuition? Genetics. 231(3), iyaf175.","short":"G. Puixeu Sala, L. Hayward, Genetics 231 (2025).","mla":"Puixeu Sala, Gemma, and Laura Hayward. “The Relationship between Sexual Dimorphism and Intersex Correlation: Do Models Support Intuition?” Genetics, vol. 231, no. 3, iyaf175, Oxford University Press, 2025, doi:10.1093/genetics/iyaf175.","chicago":"Puixeu Sala, Gemma, and Laura Hayward. “The Relationship between Sexual Dimorphism and Intersex Correlation: Do Models Support Intuition?” Genetics. Oxford University Press, 2025. https://doi.org/10.1093/genetics/iyaf175.","apa":"Puixeu Sala, G., & Hayward, L. (2025). The relationship between sexual dimorphism and intersex correlation: Do models support intuition? Genetics. Oxford University Press. https://doi.org/10.1093/genetics/iyaf175","ama":"Puixeu Sala G, Hayward L. The relationship between sexual dimorphism and intersex correlation: Do models support intuition? Genetics. 2025;231(3). doi:10.1093/genetics/iyaf175","ieee":"G. Puixeu Sala and L. Hayward, “The relationship between sexual dimorphism and intersex correlation: Do models support intuition?,” Genetics, vol. 231, no. 3. Oxford University Press, 2025."},"date_created":"2025-09-10T05:48:04Z","department":[{"_id":"BeVi"},{"_id":"NiBa"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"status":"public","month":"11","date_published":"2025-11-01T00:00:00Z","project":[{"_id":"9B9DFC9E-BA93-11EA-9121-9846C619BF3A","name":"Sexual conflict: resolution, constraints and biomedical implications","grant_number":"25817"},{"grant_number":"665385","name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00","name":"Understanding the evolution of continuous genomes"}],"quality_controlled":"1","publication_identifier":{"issn":["1943-2631"]},"intvolume":" 231","issue":"3","_id":"20330","author":[{"last_name":"Puixeu Sala","first_name":"Gemma","orcid":"0000-0001-8330-1754","id":"33AB266C-F248-11E8-B48F-1D18A9856A87","full_name":"Puixeu Sala, Gemma"},{"last_name":"Hayward","first_name":"Laura","id":"fc885ee5-24bf-11eb-ad7b-bcc5104c0c1b","full_name":"Hayward, Laura"}],"external_id":{"isi":["001598595000001"]},"isi":1,"OA_place":"publisher","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","acknowledgement":"We thank Tim Connallon for useful discussions and correspondence, Himani Sachdeva and Nick Barton for comments on the manuscript and the Scientific Computing unit at ISTA for technical support. GP is the recipient of a DOC Fellowship of the Austrian Academy of Sciences at the Institute of Science and Technology Austria (DOC 25817) and received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant (agreement no. 665385). LH received funding from the European Research Council, under the HaplotypeStructure Grant (grant no. 101055327) to Nick Barton.","file":[{"file_name":"2025_Genetics_Puixeu.pdf","checksum":"bbb73bbf8617812d4d8db4af92be9538","success":1,"file_size":1550562,"date_created":"2026-01-05T13:03:18Z","access_level":"open_access","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_id":"20946","date_updated":"2026-01-05T13:03:18Z"}],"article_type":"original","article_processing_charge":"Yes (via OA deal)","PlanS_conform":"1","date_updated":"2026-01-05T13:04:07Z","publication":"Genetics","type":"journal_article","ddc":["570"],"scopus_import":"1","ec_funded":1,"file_date_updated":"2026-01-05T13:03:18Z","publication_status":"published","doi":"10.1093/genetics/iyaf175","title":"The relationship between sexual dimorphism and intersex correlation: Do models support intuition?","volume":231,"year":"2025","OA_type":"hybrid","day":"01","oa":1,"corr_author":"1","abstract":[{"text":"The evolution of sexual dimorphism (the difference in average trait values between females and males, SD), is often thought to be constrained by shared genetic architecture between the sexes. Indeed, it is commonly expected that SD should negatively correlate with the intersex correlation (the genetic correlation between effects of segregating variants in females and males, r fm), either because (1) traits with ancestrally low r fm are less constrained in their ability to respond to sex-specific selection and thus evolve to be more dimorphic, or because (2) sex-specific selection, driving sexual dimorphism evolution, also acts to reduce r fm. Despite the intuitive appeal and prominence of these ideas, their generality and the conditions in which they hold remain unclear. Here, we develop models incorporating sex-specific stabilizing selection, mutation and genetic drift to examine the relationship between r fm and SD. We show that the two commonly-discussed mechanisms with the potential to generate a negative correlation between SD and r fm could just as easily generate a positive association, since the standard line of reasoning hinges on a hidden assumption that sex-specific adaptation more frequently favors increased dimorphism than reduced dimorphism. Our results provide, to our knowledge, the first mechanistic framework for understanding the conditions under which a correlation between r fm and SD may arise and offer a compelling explanation for inconsistent empirical evidence. We also make the intriguing observation that—even when selection between the two sexes is identical—drift generates nonzero SD. We quantify this effect and discuss its significance.","lang":"eng"}],"article_number":"iyaf175","language":[{"iso":"eng"}]},{"article_type":"letter_note","article_processing_charge":"Yes (via OA deal)","scopus_import":"1","ddc":["540"],"publication":"Nano Letters","type":"journal_article","date_updated":"2025-12-30T09:39:55Z","PlanS_conform":"1","publication_status":"published","doi":"10.1021/acs.nanolett.5c03764","file_date_updated":"2025-12-30T09:39:44Z","abstract":[{"text":"Here, we present a foundational investigation of charge transport through three BODIPY-based molecules using the scanning tunneling microscope–break junction (STM-BJ) technique. We demonstrate that molecular conductance through the BODIPY core can be measured by introducing aurophilic linkers at the 2,6-positions. By varying these linkers, we systematically modulate the frontier molecular orbital energies and fine-tune transport behavior. Our experimental results are supported by DFT-based calculations, which feature a new computationally efficient correction to standard PBE-level transmission predictions. Together, these findings establish the viability of BODIPY-based systems for molecular junction applications and lay the groundwork for future studies of their single-molecule optoelectronic properties.","lang":"eng"}],"corr_author":"1","acknowledged_ssus":[{"_id":"LifeSc"}],"language":[{"iso":"eng"}],"year":"2025","volume":25,"title":"Tuning conductance in BODIPY-based single-molecule junctions","oa":1,"day":"25","OA_type":"hybrid","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":"13697-13702","month":"08","status":"public","publisher":"American Chemical Society","citation":{"ama":"York E, Stone I, Shi W, Roy X, Venkataraman L. Tuning conductance in BODIPY-based single-molecule junctions. Nano Letters. 2025;25(36):13697-13702. doi:10.1021/acs.nanolett.5c03764","ieee":"E. York, I. Stone, W. Shi, X. Roy, and L. Venkataraman, “Tuning conductance in BODIPY-based single-molecule junctions,” Nano Letters, vol. 25, no. 36. American Chemical Society, pp. 13697–13702, 2025.","apa":"York, E., Stone, I., Shi, W., Roy, X., & Venkataraman, L. (2025). Tuning conductance in BODIPY-based single-molecule junctions. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.5c03764","chicago":"York, Emma, Ilana Stone, Wanzhuo Shi, Xavier Roy, and Latha Venkataraman. “Tuning Conductance in BODIPY-Based Single-Molecule Junctions.” Nano Letters. American Chemical Society, 2025. https://doi.org/10.1021/acs.nanolett.5c03764.","ista":"York E, Stone I, Shi W, Roy X, Venkataraman L. 2025. Tuning conductance in BODIPY-based single-molecule junctions. Nano Letters. 25(36), 13697–13702.","mla":"York, Emma, et al. “Tuning Conductance in BODIPY-Based Single-Molecule Junctions.” Nano Letters, vol. 25, no. 36, American Chemical Society, 2025, pp. 13697–702, doi:10.1021/acs.nanolett.5c03764.","short":"E. York, I. Stone, W. Shi, X. Roy, L. Venkataraman, Nano Letters 25 (2025) 13697–13702."},"department":[{"_id":"LaVe"}],"date_created":"2025-09-10T05:48:29Z","_id":"20331","publication_identifier":{"eissn":["1530-6992"],"issn":["1530-6984"]},"issue":"36","intvolume":" 25","date_published":"2025-08-25T00:00:00Z","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","external_id":{"pmid":["40855728"],"isi":["001557017200001"]},"author":[{"full_name":"York, Emma","id":"08dde91e-8e0a-11f0-9d7d-9e8d80864f16","last_name":"York","first_name":"Emma"},{"last_name":"Stone","first_name":"Ilana","full_name":"Stone, Ilana"},{"first_name":"Wanzhuo","last_name":"Shi","full_name":"Shi, Wanzhuo","id":"a3010425-87c8-11f0-8106-bec32bea74da"},{"full_name":"Roy, Xavier","last_name":"Roy","first_name":"Xavier"},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","full_name":"Venkataraman, Latha","first_name":"Latha","last_name":"Venkataraman"}],"pmid":1,"OA_place":"publisher","isi":1,"file":[{"date_created":"2025-12-30T09:39:44Z","relation":"main_file","access_level":"open_access","checksum":"bac881601e1f33c3cf8f51d50b958e68","file_size":3144989,"success":1,"file_name":"2025_NanoLetters_York.pdf","file_id":"20910","date_updated":"2025-12-30T09:39:44Z","creator":"dernst","content_type":"application/pdf"}],"has_accepted_license":"1","acknowledgement":"We thank the National Science Foundation (No. NSF-DMR 2241180) for supporting this research. Synthetic work at Columbia was funded in part by the Air Force Office of Scientific Research (AFOSR), under Grant No. FA9550-22-1-0389. The cryoprobe on the 500 MHz NMR instrument used in this research at Columbia was purchased through the NIH Award No. S10OD026749. This work was supported in part by the Institute of Science and Technology Austria. HRMS sample preparation, analysis, and data evaluation were performed by Aikaterina Paraskevopoulou, Mass Spec Service, LSF, ISTA."},{"corr_author":"1","abstract":[{"lang":"eng","text":"Oogenesis – the formation and development of an oocyte – is fundamental to reproduction and embryonic development. Due to its accessibility to genetic manipulations and the ability to culture and experimentally manipulate oocytes ex vivo, zebrafish has emerged as a powerful vertebrate model system for studying oogenesis. In this review, we provide a comprehensive overview of zebrafish oogenesis, from early germ cell formation to oocyte maturation and fertilization. We discuss recent advances in uncovering the molecular and cellular mechanisms driving this complex process and highlight key knowledge gaps that remain to be addressed."}],"article_number":"103650","language":[{"iso":"eng"}],"volume":175,"title":"Decoding zebrafish oogenesis: From primordial germ cell development to fertilization","year":"2025","OA_type":"hybrid","day":"01","oa":1,"publication_status":"published","doi":"10.1016/j.semcdb.2025.103650","file_date_updated":"2025-12-30T10:21:00Z","ddc":["570"],"scopus_import":"1","date_updated":"2025-12-30T10:21:13Z","PlanS_conform":"1","publication":"Seminars in Cell and Developmental Biology","type":"journal_article","article_type":"review","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","acknowledgement":"We thank Carolina Camelo for making schematics for this review.","file":[{"creator":"dernst","content_type":"application/pdf","file_id":"20914","date_updated":"2025-12-30T10:21:00Z","file_name":"2025_SemCellDevBiology_Hofmann.pdf","file_size":2778561,"success":1,"checksum":"80ea6cbb004853bb1e87db3422a74aca","date_created":"2025-12-30T10:21:00Z","access_level":"open_access","relation":"main_file"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Hofmann","first_name":"Laura","full_name":"Hofmann, Laura","id":"b88d43f2-dc74-11ea-a0a7-e41b7912e031"},{"id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566","full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","first_name":"Carl-Philipp J"}],"pmid":1,"external_id":{"isi":["001567260100001"],"pmid":["40913907"]},"isi":1,"OA_place":"publisher","publication_identifier":{"issn":["1084-9521"],"eissn":["1096-3634"]},"intvolume":" 175","_id":"20349","date_published":"2025-12-01T00:00:00Z","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"status":"public","month":"12","citation":{"ista":"Hofmann L, Heisenberg C-PJ. 2025. Decoding zebrafish oogenesis: From primordial germ cell development to fertilization. Seminars in Cell and Developmental Biology. 175, 103650.","mla":"Hofmann, Laura, and Carl-Philipp J. Heisenberg. “Decoding Zebrafish Oogenesis: From Primordial Germ Cell Development to Fertilization.” Seminars in Cell and Developmental Biology, vol. 175, 103650, Elsevier, 2025, doi:10.1016/j.semcdb.2025.103650.","short":"L. Hofmann, C.-P.J. Heisenberg, Seminars in Cell and Developmental Biology 175 (2025).","chicago":"Hofmann, Laura, and Carl-Philipp J Heisenberg. “Decoding Zebrafish Oogenesis: From Primordial Germ Cell Development to Fertilization.” Seminars in Cell and Developmental Biology. Elsevier, 2025. https://doi.org/10.1016/j.semcdb.2025.103650.","apa":"Hofmann, L., & Heisenberg, C.-P. J. (2025). Decoding zebrafish oogenesis: From primordial germ cell development to fertilization. Seminars in Cell and Developmental Biology. Elsevier. https://doi.org/10.1016/j.semcdb.2025.103650","ieee":"L. Hofmann and C.-P. J. Heisenberg, “Decoding zebrafish oogenesis: From primordial germ cell development to fertilization,” Seminars in Cell and Developmental Biology, vol. 175. Elsevier, 2025.","ama":"Hofmann L, Heisenberg C-PJ. Decoding zebrafish oogenesis: From primordial germ cell development to fertilization. Seminars in Cell and Developmental Biology. 2025;175. doi:10.1016/j.semcdb.2025.103650"},"publisher":"Elsevier","date_created":"2025-09-14T22:01:32Z","department":[{"_id":"CaHe"}]},{"type":"journal_article","publication":"Astronomy & Astrophysics","date_updated":"2026-02-16T12:12:53Z","PlanS_conform":"1","scopus_import":"1","ddc":["520"],"article_processing_charge":"No","article_type":"original","oa":1,"OA_type":"diamond","day":"01","year":"2025","volume":701,"title":"Interior rotation modelling of the β Cep pulsator HD 192575 including multiplet asymmetries","language":[{"iso":"eng"}],"article_number":"A5","abstract":[{"lang":"eng","text":"Context. Rotation plays an important role in stellar evolution. However, the mechanisms behind the transport of angular momentum in stars at various stages of their evolution are not well understood. To improve our understanding of these processes, it is necessary to measure and validate the internal rotation profiles of stars across different stages of evolution and mass regimes.\r\nAims. Our aim is to constrain the internal rotation profile of the 12-M⊙ β Cep pulsator HD 192575 from the observed pulsational multiplets and the asymmetries of their component frequencies.\r\nMethods. We updated the forward asteroseismic modelling of HD 192575 based on new TESS observations. We inverted the rotation profile from the symmetric part of the splittings and computed the multiplet asymmetries due to the Coriolis force and stellar deformation, which we treated perturbatively. We compared the computed asymmetries with the observed asymmetries.\r\nResults. Our new forward asteroseismic modelling is in agreement with previous results but with increased uncertainties, partially due to increased frequency precision, which required us to relax certain constraints. Ambiguity in the mode identification is the main source of the uncertainty, which also affects the inferred rotation profiles. Almost all acceptable rotation profiles occur in the regime below 0.4 d−1 and favour weak radial differential rotation, with a ratio of core to envelope rotation of less than 2. We find that the quality of the match between the observed and theoretically predicted mode asymmetries is strongly dependent on the mode identification and the internal structure of the star.\r\nConclusions. Our results offer the first detailed rotation inversion for a β Cep pulsator. They show that the rotation profile and the mode asymmetries provide a valuable tool for further constraining the evolutionary properties of HD 192575, and in particular the details of angular momentum transport in massive stars."}],"file_date_updated":"2025-09-15T06:58:09Z","ec_funded":1,"doi":"10.1051/0004-6361/202452885","publication_status":"published","project":[{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"_id":"914d8549-16d5-11f0-9cad-bbe6324c93a9","name":"Unveiling the mysteries of stellar dynamics: a pioneering journey in magnetoasteroseismology","grant_number":"101165631"}],"quality_controlled":"1","date_published":"2025-09-01T00:00:00Z","_id":"20350","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"intvolume":" 701","date_created":"2025-09-14T22:01:32Z","department":[{"_id":"LiBu"}],"citation":{"ieee":"V. Vanlaer et al., “Interior rotation modelling of the β Cep pulsator HD 192575 including multiplet asymmetries,” Astronomy & Astrophysics, vol. 701. EDP Sciences, 2025.","apa":"Vanlaer, V., Bowman, D. M., Burssens, S., Das, S. B., Bugnet, L. A., Mathis, S., & Aerts, C. (2025). Interior rotation modelling of the β Cep pulsator HD 192575 including multiplet asymmetries. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202452885","ama":"Vanlaer V, Bowman DM, Burssens S, et al. Interior rotation modelling of the β Cep pulsator HD 192575 including multiplet asymmetries. Astronomy & Astrophysics. 2025;701. doi:10.1051/0004-6361/202452885","chicago":"Vanlaer, V., D. M. Bowman, S. Burssens, Srijan B Das, Lisa Annabelle Bugnet, S. Mathis, and C. Aerts. “Interior Rotation Modelling of the β Cep Pulsator HD 192575 Including Multiplet Asymmetries.” Astronomy & Astrophysics. EDP Sciences, 2025. https://doi.org/10.1051/0004-6361/202452885.","ista":"Vanlaer V, Bowman DM, Burssens S, Das SB, Bugnet LA, Mathis S, Aerts C. 2025. Interior rotation modelling of the β Cep pulsator HD 192575 including multiplet asymmetries. Astronomy & Astrophysics. 701, A5.","mla":"Vanlaer, V., et al. “Interior Rotation Modelling of the β Cep Pulsator HD 192575 Including Multiplet Asymmetries.” Astronomy & Astrophysics, vol. 701, A5, EDP Sciences, 2025, doi:10.1051/0004-6361/202452885.","short":"V. Vanlaer, D.M. Bowman, S. Burssens, S.B. Das, L.A. Bugnet, S. Mathis, C. Aerts, Astronomy & Astrophysics 701 (2025)."},"publisher":"EDP Sciences","month":"09","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"file":[{"file_id":"20354","date_updated":"2025-09-15T06:58:09Z","creator":"dernst","content_type":"application/pdf","date_created":"2025-09-15T06:58:09Z","relation":"main_file","access_level":"open_access","file_size":3175077,"checksum":"9ee9f34cf86305602d6cb3e07a1cc1a6","success":1,"file_name":"2025_AstronomyAstrophysics_Vanlaer.pdf"}],"has_accepted_license":"1","acknowledgement":"The authors appreciated the critical comments from the\r\nreferee, which encouraged V.V. to embark upon a new code development\r\nsprint. V.V. gratefully acknowledges support from the Research Foundation\r\nFlanders (FWO) under grant agreement N◦1156923N (PhD Fellowship) and\r\nN\r\n◦K233724N (Travel grant). D.M.B. gratefully acknowledges support from\r\nthe Research Foundation Flanders (FWO; grant number: 1286521N), and UK\r\nResearch and Innovation (UKRI) in the form of a Frontier Research grant under\r\nthe UK government’s ERC Horizon Europe funding guarantee (SYMPHONY;\r\ngrant number: EP/Y031059/1), and a Royal Society University Research Fellowship (URF; grant number: URF\\R1\\231631). S.B.D. acknowledges funding from\r\nthe European Union’s Horizon 2020 research and innovation programme under\r\nthe Marie Skłodowska-Curie grant agreement No 101034413. L.B. gratefully\r\nacknowledges support from the European Research Council (ERC) under the\r\nHorizon Europe programme (Calcifer; Starting Grant agreement N◦101165631).\r\nS.M. acknowledges support from the PLATO CNES grant at CEA/DAp.C.A.\r\nacknowledges financial support from the Research Foundation Flanders (FWO)\r\nunder grant K802922N (Sabbatical leave); she is grateful for the kind hospitality\r\noffered by CEA/Saclay during her sabbatical work visits in the spring of 2023.\r\nThe research leading to these results has received funding from the European\r\nResearch Council (ERC) under the Horizon Europe programme (Synergy Grant\r\nagreement N◦101071505: 4D-STAR). While funded by the European Union,\r\nviews and opinions expressed are however those of the author(s) only and do\r\nnot necessarily reflect those of the European Union or the European Research\r\nCouncil. Neither the European Union nor the granting authority can be held\r\nresponsible for them. The TESS data presented in this paper were obtained from\r\nthe Mikulski Archive for Space Telescopes (MAST) at the Space Telescope Science Institute (STScI), which is operated by the Association of Universities for\r\nResearch in Astronomy, Inc., under NASA contract NAS5-26555. Support to\r\nMAST for these data is provided by the NASA Office of Space Science via grant\r\nNAG5-7584 and by other grants and contracts. Funding for the TESS mission\r\nwas provided by the NASA Explorer Program.","OA_place":"publisher","isi":1,"arxiv":1,"external_id":{"arxiv":["2506.19948"],"isi":["001561561200007"]},"author":[{"full_name":"Vanlaer, V.","first_name":"V.","last_name":"Vanlaer"},{"full_name":"Bowman, D. M.","first_name":"D. M.","last_name":"Bowman"},{"first_name":"S.","last_name":"Burssens","full_name":"Burssens, S."},{"first_name":"Srijan B","last_name":"Das","orcid":"0000-0003-0896-7972","id":"9ce7c423-dacf-11ed-8942-e09c6cb27149","full_name":"Das, Srijan B"},{"id":"d9edb345-f866-11ec-9b37-d119b5234501","orcid":"0000-0003-0142-4000","full_name":"Bugnet, Lisa Annabelle","first_name":"Lisa Annabelle","last_name":"Bugnet"},{"full_name":"Mathis, S.","last_name":"Mathis","first_name":"S."},{"last_name":"Aerts","first_name":"C.","full_name":"Aerts, C."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version"},{"article_processing_charge":"Yes","article_type":"original","date_updated":"2025-09-30T14:40:27Z","PlanS_conform":"1","publication":"Science Advances","type":"journal_article","ddc":["570"],"scopus_import":"1","file_date_updated":"2025-09-15T07:23:12Z","doi":"10.1126/sciadv.adx2893","publication_status":"published","day":"29","OA_type":"gold","oa":1,"title":"Mechanistic adaptation of the metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned","volume":11,"year":"2025","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Rab GTPases organize intracellular trafficking and provide identity to organelles. Their spatiotemporal activation by guanine nucleotide exchange factors (GEFs) is tightly controlled to ensure fidelity. Our structural and functional comparison of the tri-longin domain RabGEFs Mon1-Ccz1 and Fuzzy-Inturned reveals the molecular basis for their target specificity. Both complexes rely on a conserved sequence motif of their substrate GTPases for the catalytic mechanism, while secondary interactions allow discrimination between targets. We also find that dimeric Mon1-Ccz1 from fungi and the metazoan homologs with the additional third subunit RMC1/Bulli bind membranes through electrostatic interactions via distinct interfaces. Protein-lipid interaction studies and functional characterization in flies reveal an essential function of RMC1/Bulli as mediator of GEF complex membrane recruitment. In the case of Fuzzy-Inturned, reconstitution experiments demonstrate that the BAR (Bin-Amphiphysin-Rvs) domain protein CiBAR1 can support membrane recruitment of the GEF. Collectively, our study demonstrates the molecular basis for the adaptation of TLD-RabGEFs to different cellular functions."}],"date_created":"2025-09-14T22:01:32Z","department":[{"_id":"MaLo"}],"publisher":"AAAS","citation":{"mla":"Wilmes, Stephan, et al. “Mechanistic Adaptation of the Metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned.” Science Advances, vol. 11, no. 35, AAAS, 2025, p. eadx2893, doi:10.1126/sciadv.adx2893.","short":"S. Wilmes, J. Tönjes, M. Drechsler, A. Ruf, J.H. Schäfer, A. Lürick, D. Januliene, S. Apelt, D. Di Iorio, S.V. Wegner, M. Loose, A. Moeller, A. Paululat, D. Kümmel, Science Advances 11 (2025) eadx2893.","ista":"Wilmes S, Tönjes J, Drechsler M, Ruf A, Schäfer JH, Lürick A, Januliene D, Apelt S, Di Iorio D, Wegner SV, Loose M, Moeller A, Paululat A, Kümmel D. 2025. Mechanistic adaptation of the metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned. Science Advances. 11(35), eadx2893.","chicago":"Wilmes, Stephan, Jesse Tönjes, Maik Drechsler, Anita Ruf, Jan Hannes Schäfer, Anna Lürick, Dovile Januliene, et al. “Mechanistic Adaptation of the Metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned.” Science Advances. AAAS, 2025. https://doi.org/10.1126/sciadv.adx2893.","ama":"Wilmes S, Tönjes J, Drechsler M, et al. Mechanistic adaptation of the metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned. Science Advances. 2025;11(35):eadx2893. doi:10.1126/sciadv.adx2893","ieee":"S. Wilmes et al., “Mechanistic adaptation of the metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned,” Science Advances, vol. 11, no. 35. AAAS, p. eadx2893, 2025.","apa":"Wilmes, S., Tönjes, J., Drechsler, M., Ruf, A., Schäfer, J. H., Lürick, A., … Kümmel, D. (2025). Mechanistic adaptation of the metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned. Science Advances. AAAS. https://doi.org/10.1126/sciadv.adx2893"},"status":"public","month":"08","page":"eadx2893","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"project":[{"_id":"bd6ae2ca-d553-11ed-ba76-a4aa239da5ee","name":"Synthetic and structural biology of Rab GTPase networks","grant_number":"101045340"}],"quality_controlled":"1","date_published":"2025-08-29T00:00:00Z","intvolume":" 11","publication_identifier":{"eissn":["2375-2548"]},"issue":"35","_id":"20351","isi":1,"OA_place":"publisher","author":[{"full_name":"Wilmes, Stephan","first_name":"Stephan","last_name":"Wilmes"},{"last_name":"Tönjes","first_name":"Jesse","full_name":"Tönjes, Jesse"},{"full_name":"Drechsler, Maik","first_name":"Maik","last_name":"Drechsler"},{"full_name":"Ruf, Anita","last_name":"Ruf","first_name":"Anita"},{"full_name":"Schäfer, Jan Hannes","last_name":"Schäfer","first_name":"Jan Hannes"},{"full_name":"Lürick, Anna","last_name":"Lürick","first_name":"Anna"},{"last_name":"Januliene","first_name":"Dovile","full_name":"Januliene, Dovile"},{"full_name":"Apelt, Steven","first_name":"Steven","last_name":"Apelt"},{"full_name":"Di Iorio, Daniele","first_name":"Daniele","last_name":"Di Iorio"},{"last_name":"Wegner","first_name":"Seraphine V.","full_name":"Wegner, Seraphine V."},{"first_name":"Martin","last_name":"Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87","full_name":"Loose, Martin","orcid":"0000-0001-7309-9724"},{"last_name":"Moeller","first_name":"Arne","full_name":"Moeller, Arne"},{"full_name":"Paululat, Achim","first_name":"Achim","last_name":"Paululat"},{"full_name":"Kümmel, Daniel","last_name":"Kümmel","first_name":"Daniel"}],"pmid":1,"external_id":{"isi":["001559806100033"],"pmid":["40864718"]},"DOAJ_listed":"1","oa_version":"Published Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","acknowledgement":"We thank A.-M. Lawrence-Dörner and B. Berkenfeld for technical assistance and the members of the Kümmel Lab for constructive feedback. We are grateful to C. Ungermann and L. Langemeyer for insightful discussions and to F. Barr for providing plasmids encoding Fuzzy, Inturned, Rab23, and Rsg1. The template clone Flag-ciBAR1 was a gift from K.-I. Takemaru (Addgene, plasmid #200440). We thank the Bloomington Drosophila Stock center (BDSC) and DSHB for providing fly stocks and antibodies. This work was supported by the German Research Foundation (DFG) through the grants SFB1557-P10 (D.K.), SFB1557-P11 (A.M.), and SFB1577-P6, PA517/12-2, PA517/14-1, PA517/15-1, and PA517/16-1 (A.P.). Cryo-EM data were collected at the infrastructure of the University of Osnabrück, funded by the DFG (project number 455249646). J.-H.S. was supported by the Friedrich-Ebert Foundation. M.L. acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement number 101045340).","has_accepted_license":"1","file":[{"date_created":"2025-09-15T07:23:12Z","access_level":"open_access","relation":"main_file","file_name":"2025_ScienceAdvance_Wilmes.pdf","file_size":3434827,"checksum":"a3de801f3c6c1deadd7099d965db799a","success":1,"file_id":"20355","date_updated":"2025-09-15T07:23:12Z","creator":"dernst","content_type":"application/pdf"}]},{"article_processing_charge":"No","article_type":"original","scopus_import":"1","type":"journal_article","publication":"Nature Astronomy","date_updated":"2025-12-30T10:27:05Z","doi":"10.1038/s41550-025-02610-x","publication_status":"published","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2509.12488","open_access":"1"}],"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"At high metallicity, a majority of massive stars have at least one close stellar companion. The evolution of such binaries is subject to strong interaction processes, which heavily impact the characteristics of their life-ending supernova and compact remnants. For the low-metallicity environments of high-redshift galaxies, constraints on the multiplicity properties of massive stars over the separation range leading to binary interaction are crucially missing. Here we show that the presence of massive stars in close binaries is ubiquitous, even at low metallicity. Using the Very Large Telescope, we obtained multi-epoch radial velocity measurements of a representative sample of 139 massive O-type stars across the Small Magellanic Cloud, which has a metal content of about one-fifth of the solar value. We find that 45% of them show radial velocity variations that demonstrate that they are members of close binary systems, and predominantly have orbital periods shorter than 1 year. Correcting for observational biases indicates that at least 70+11−6 % of the O stars in our sample are in close binaries, and that at least 68+7\r\n−8% of all O stars interact with a companion star during their lifetime. We found no evidence supporting a statistically significant trend of the multiplicity properties with metallicity. Our results indicate that multiplicity and binary interactions govern the evolution of massive stars and determine their cosmic feedback and explosive fates."}],"oa":1,"day":"02","OA_type":"green","year":"2025","volume":9,"title":"A high fraction of close massive binary stars at low metallicity","month":"09","status":"public","page":"1337-1346","date_created":"2025-09-14T22:01:32Z","department":[{"_id":"YlGo"}],"citation":{"ieee":"H. Sana et al., “A high fraction of close massive binary stars at low metallicity,” Nature Astronomy, vol. 9. Springer Nature, pp. 1337–1346, 2025.","apa":"Sana, H., Shenar, T., Bodensteiner, J., Britavskiy, N., Langer, N., Lennon, D. J., … Willcox, R. (2025). A high fraction of close massive binary stars at low metallicity. Nature Astronomy. Springer Nature. https://doi.org/10.1038/s41550-025-02610-x","ama":"Sana H, Shenar T, Bodensteiner J, et al. A high fraction of close massive binary stars at low metallicity. Nature Astronomy. 2025;9:1337-1346. doi:10.1038/s41550-025-02610-x","short":"H. Sana, T. Shenar, J. Bodensteiner, N. Britavskiy, N. Langer, D.J. Lennon, L. Mahy, I. Mandel, S.E. De Mink, L.R. Patrick, J.I. Villaseñor, M. Dirickx, M. Abdul-Masih, L.A. Almeida, F. Backs, S.R. Berlanas, M. Bernini-Peron, D.M. Bowman, V.A. Bronner, P.A. Crowther, K. Deshmukh, C.J. Evans, M. Fabry, M. Gieles, A. Gilkis, G. González-Torà, G. Gräfener, Y.L.L. Götberg, C. Hawcroft, V. Hénault-Brunet, A. Herrero, G. Holgado, R.G. Izzard, A. De Koter, S. Janssens, C. Johnston, J. Josiek, S. Justham, V.M. Kalari, J. Klencki, J. Kubát, B. Kubátová, R.R. Lefever, J.T. Van Loon, B. Ludwig, J. Mackey, J. Maíz Apellániz, G. Maravelias, P. Marchant, T. Mazeh, A. Menon, M. Moe, F. Najarro, L.M. Oskinova, R. Ovadia, D. Pauli, M. Pawlak, V. Ramachandran, M. Renzo, D.F. Rocha, A.A.C. Sander, F.R.N. Schneider, A. Schootemeijer, E.C. Schösser, C. Schürmann, K. Sen, S. Shahaf, S. Simón-Díaz, L.A.C. Van Son, M. Stoop, S. Toonen, F. Tramper, R. Valli, A. Vigna-Gómez, J.S. Vink, C. Wang, R. Willcox, Nature Astronomy 9 (2025) 1337–1346.","mla":"Sana, H., et al. “A High Fraction of Close Massive Binary Stars at Low Metallicity.” Nature Astronomy, vol. 9, Springer Nature, 2025, pp. 1337–46, doi:10.1038/s41550-025-02610-x.","ista":"Sana H, Shenar T, Bodensteiner J, Britavskiy N, Langer N, Lennon DJ, Mahy L, Mandel I, De Mink SE, Patrick LR, Villaseñor JI, Dirickx M, Abdul-Masih M, Almeida LA, Backs F, Berlanas SR, Bernini-Peron M, Bowman DM, Bronner VA, Crowther PA, Deshmukh K, Evans CJ, Fabry M, Gieles M, Gilkis A, González-Torà G, Gräfener G, Götberg YLL, Hawcroft C, Hénault-Brunet V, Herrero A, Holgado G, Izzard RG, De Koter A, Janssens S, Johnston C, Josiek J, Justham S, Kalari VM, Klencki J, Kubát J, Kubátová B, Lefever RR, Van Loon JT, Ludwig B, Mackey J, Maíz Apellániz J, Maravelias G, Marchant P, Mazeh T, Menon A, Moe M, Najarro F, Oskinova LM, Ovadia R, Pauli D, Pawlak M, Ramachandran V, Renzo M, Rocha DF, Sander AAC, Schneider FRN, Schootemeijer A, Schösser EC, Schürmann C, Sen K, Shahaf S, Simón-Díaz S, Van Son LAC, Stoop M, Toonen S, Tramper F, Valli R, Vigna-Gómez A, Vink JS, Wang C, Willcox R. 2025. A high fraction of close massive binary stars at low metallicity. Nature Astronomy. 9, 1337–1346.","chicago":"Sana, H., T. Shenar, J. Bodensteiner, N. Britavskiy, N. Langer, D. J. Lennon, L. Mahy, et al. “A High Fraction of Close Massive Binary Stars at Low Metallicity.” Nature Astronomy. Springer Nature, 2025. https://doi.org/10.1038/s41550-025-02610-x."},"publisher":"Springer Nature","_id":"20352","publication_identifier":{"eissn":["2397-3366"]},"intvolume":" 9","quality_controlled":"1","date_published":"2025-09-02T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","OA_place":"repository","isi":1,"external_id":{"isi":["001568077900001"],"arxiv":["2509.12488"]},"arxiv":1,"author":[{"full_name":"Sana, H.","first_name":"H.","last_name":"Sana"},{"full_name":"Shenar, T.","first_name":"T.","last_name":"Shenar"},{"last_name":"Bodensteiner","first_name":"J.","full_name":"Bodensteiner, J."},{"full_name":"Britavskiy, N.","first_name":"N.","last_name":"Britavskiy"},{"last_name":"Langer","first_name":"N.","full_name":"Langer, N."},{"full_name":"Lennon, D. J.","first_name":"D. 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G."},{"full_name":"De Koter, A.","last_name":"De Koter","first_name":"A."},{"last_name":"Janssens","first_name":"S.","full_name":"Janssens, S."},{"first_name":"C.","last_name":"Johnston","full_name":"Johnston, C."},{"last_name":"Josiek","first_name":"J.","full_name":"Josiek, J."},{"first_name":"S.","last_name":"Justham","full_name":"Justham, S."},{"full_name":"Kalari, V. M.","last_name":"Kalari","first_name":"V. M."},{"last_name":"Klencki","first_name":"J.","full_name":"Klencki, J."},{"first_name":"J.","last_name":"Kubát","full_name":"Kubát, J."},{"first_name":"B.","last_name":"Kubátová","full_name":"Kubátová, B."},{"first_name":"R. R.","last_name":"Lefever","full_name":"Lefever, R. R."},{"first_name":"J. Th","last_name":"Van Loon","full_name":"Van Loon, J. 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M.","last_name":"Oskinova"},{"full_name":"Ovadia, R.","first_name":"R.","last_name":"Ovadia"},{"first_name":"D.","last_name":"Pauli","full_name":"Pauli, D."},{"first_name":"M.","last_name":"Pawlak","full_name":"Pawlak, M."},{"full_name":"Ramachandran, V.","first_name":"V.","last_name":"Ramachandran"},{"first_name":"M.","last_name":"Renzo","full_name":"Renzo, M."},{"first_name":"D. F.","last_name":"Rocha","full_name":"Rocha, D. F."},{"last_name":"Sander","first_name":"A. A.C.","full_name":"Sander, A. A.C."},{"first_name":"F. R.N.","last_name":"Schneider","full_name":"Schneider, F. R.N."},{"first_name":"A.","last_name":"Schootemeijer","full_name":"Schootemeijer, A."},{"full_name":"Schösser, E. C.","last_name":"Schösser","first_name":"E. C."},{"full_name":"Schürmann, C.","first_name":"C.","last_name":"Schürmann"},{"full_name":"Sen, K.","last_name":"Sen","first_name":"K."},{"first_name":"S.","last_name":"Shahaf","full_name":"Shahaf, S."},{"full_name":"Simón-Díaz, S.","last_name":"Simón-Díaz","first_name":"S."},{"full_name":"Van Son, L. A.C.","last_name":"Van Son","first_name":"L. A.C."},{"full_name":"Stoop, M.","first_name":"M.","last_name":"Stoop"},{"last_name":"Toonen","first_name":"S.","full_name":"Toonen, S."},{"full_name":"Tramper, F.","first_name":"F.","last_name":"Tramper"},{"full_name":"Valli, R.","last_name":"Valli","first_name":"R."},{"last_name":"Vigna-Gómez","first_name":"A.","full_name":"Vigna-Gómez, A."},{"full_name":"Vink, J. S.","first_name":"J. S.","last_name":"Vink"},{"full_name":"Wang, C.","last_name":"Wang","first_name":"C."},{"full_name":"Willcox, R.","first_name":"R.","last_name":"Willcox"}],"acknowledgement":"Based on data collected at the European Southern Observatory (ESO) under programme ID 112.25R7. The research leading to these results has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 and Horizon Europe research and innovation programme (grant agreement numbers 772225: MULTIPLES, 772086: ASSESS and 945806: TEL-STARS, ADG101054731: Stellar-BHs-SDSS-V, and 101164755: METAL). This research was supported by the Israel Science Foundation (ISF) under grant number 0603225041. We acknowledge support from the Science and Technology Facilities Council (research grant ST/V000853/1 and ST/V000233/1), UK Research and Innovation (UKRI) and the UK government’s ERC Horizon Europe funding guarantee (grant number EP/Y031059/1), a Royal Society University Research Fellowship (grant number URF\\R1\\231631), a Royal Society–Science Foundation Ireland University Research Fellowship, the German Deutsche Forschungsgemeinschaft (Project-ID 496854903, 445674056 and 443790621, Germany’s Excellence Strategy EXC 2181/1-390900948), the Klaus Tschira Foundation, the JSPS Kakenhi Grant-in-Aid for Scientific Research (23K19071) and international fellowships (at the Graduate school of Science, Tokyo University), the Australian Research Council (ARC) Centre of Excellence for Gravitational Wave Discovery (OzGrav; project number CE230100016), the Deutsches Zentrum für Luft und Raumfahrt (DLR) grants FKZ 50OR2005 and 50OR2306, Agencia Española de Investigación (AEI) of the Spanish Ministerio de Ciencia Innovación y Universidades (MICIU) and the European Regional Development Fund, FEDER and Severo Ochoa Programme (grants PID2021-122397NB-C21 and CEX2019-000920-S), the NextGeneration EU/PRTR and MIU (UNI/551/2021) trough grant Margarita Salas-UL, the CAPES-Br and FAPERJ/DSC-10 (SEI-260003/001630/2023), MCIN/AEI/10.13039/501100011033 by ‘ERDF A way of making Europe’ (grants PID2019-105552RB-C41 and PID2022-137779OB-C41, PID2021-125485NB-C22, CEX2019-000918-M) funded by MCIN/AEI/10.13039/501100011033 (State Agency for Research of the Spanish Ministry of Science and Innovation) and SGR-2021-01069 (AGAUR), the Spanish Government Ministerio de Ciencia e Innovación and Agencia Estatal de Investigación (10.13 039/501 100 011 033; grant PID2022-136 640 NB-C22), the Consejo Superior de Investigaciones Científicas (CSIC; grant 2022-AEP 005), the Polish National Agency for Academic Exchange (BEKKER fellowship BPN/BEK/2022/1/00106) and National Science Center (NCN, Poland; grant number OPUS 2021/41/B/ST9/00757), the ‘La Caixa’ Foundation (ID 100010434) under the fellowship code LCF/BQ/PI23/11970035, the Research foundation Flanders (FWO) PhD fellowship under project 11E1721N and senior postdoctoral fellowship under number 12ZY523N, and the Netherlands Research Council NWO (VIDI 203.061 grant)."},{"date_created":"2025-09-21T22:01:31Z","department":[{"_id":"TiBr"}],"publisher":"Springer Nature","citation":{"mla":"Browning, Timothy D., et al. “Pairs of Commuting Integer Matrices.” Mathematische Annalen, vol. 393, Springer Nature, 2025, pp. 1863–1880, doi:10.1007/s00208-025-03285-5.","short":"T.D. Browning, W. Sawin, V. Wang, Mathematische Annalen 393 (2025) 1863–1880.","ista":"Browning TD, Sawin W, Wang V. 2025. Pairs of commuting integer matrices. Mathematische Annalen. 393, 1863–1880.","chicago":"Browning, Timothy D, Will Sawin, and Victor Wang. “Pairs of Commuting Integer Matrices.” Mathematische Annalen. Springer Nature, 2025. https://doi.org/10.1007/s00208-025-03285-5.","ieee":"T. D. Browning, W. Sawin, and V. Wang, “Pairs of commuting integer matrices,” Mathematische Annalen, vol. 393. Springer Nature, pp. 1863–1880, 2025.","ama":"Browning TD, Sawin W, Wang V. Pairs of commuting integer matrices. Mathematische Annalen. 2025;393:1863–1880. doi:10.1007/s00208-025-03285-5","apa":"Browning, T. D., Sawin, W., & Wang, V. (2025). Pairs of commuting integer matrices. Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-025-03285-5"},"status":"public","month":"10","page":"1863–1880","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"project":[{"grant_number":"P36278","_id":"bd8a4fdc-d553-11ed-ba76-80a0167441a3","name":"Rational curves via function field analytic number theory"},{"grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program"}],"quality_controlled":"1","date_published":"2025-10-01T00:00:00Z","publication_identifier":{"issn":["0025-5831"],"eissn":["1432-1807"]},"intvolume":" 393","_id":"20367","OA_place":"publisher","isi":1,"author":[{"orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87","full_name":"Browning, Timothy D","first_name":"Timothy D","last_name":"Browning"},{"full_name":"Sawin, Will","first_name":"Will","last_name":"Sawin"},{"last_name":"Wang","first_name":"Victor","orcid":"0000-0002-0704-7026","id":"76096395-aea4-11ed-a680-ab8ebbd3f1b9","full_name":"Wang, Victor"}],"arxiv":1,"external_id":{"isi":["001567740200001"],"arxiv":["2409.01920"]},"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","acknowledgement":"The authors are very grateful to Alina Ostafe, Matthew Satriano and Igor Shparlinski for drawing their attention to this problem and for useful comments, and to Michael Larsen and Peter Sarnak for their helpful correspondence. We also thank the referee for their valuable input. While working on this paper the first author was supported by a FWF grant (DOI 10.55776/P36278), the second author by a Sloan Research Fellowship, and the third author by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. Open access funding provided by Institute of Science and Technology (IST Austria).","file":[{"date_updated":"2026-01-05T13:15:44Z","file_id":"20950","content_type":"application/pdf","creator":"dernst","relation":"main_file","access_level":"open_access","date_created":"2026-01-05T13:15:44Z","success":1,"file_size":337505,"checksum":"1e94da1a67306e03c8e0086518faf4bc","file_name":"2025_MathAnnalen_Browning.pdf"}],"article_processing_charge":"Yes (via OA deal)","article_type":"original","PlanS_conform":"1","date_updated":"2026-01-05T13:15:53Z","publication":"Mathematische Annalen","type":"journal_article","ddc":["510"],"scopus_import":"1","file_date_updated":"2026-01-05T13:15:44Z","ec_funded":1,"doi":"10.1007/s00208-025-03285-5","publication_status":"published","OA_type":"hybrid","day":"01","oa":1,"title":"Pairs of commuting integer matrices","volume":393,"year":"2025","language":[{"iso":"eng"}],"corr_author":"1","abstract":[{"lang":"eng","text":"We prove upper and lower bounds on the number of pairs of commuting n x n matrices with integer entries in [-T, T], as T -> . Our work uses Fourier analysis and leads to an analysis of exponential sums involving matrices over finite fields. These are bounded by combining a stratification result of Fouvry and Katz with a new result about the flatness of the commutator Lie bracket."}]},{"doi":"10.1126/sciadv.adw4124","publication_status":"published","file_date_updated":"2025-09-23T07:57:51Z","article_number":"eadw4124","language":[{"iso":"eng"}],"corr_author":"1","abstract":[{"lang":"eng","text":"The Huntingtin protein (HTT), named for its role in Huntington’s disease, has been best understood as a scaffolding protein that promotes vesicle transport by molecular motors along microtubules. Here, we show that HTT also interacts with the actin cytoskeleton, and its loss of function disturbs the morphology and function of the axonal growth cone. We demonstrate that HTT organizes F-actin into bundles. Cryo–electron tomography (cryo-ET) and subtomogram averaging (STA) structural analyses reveal that HTT’s N-terminal HEAT and Bridge domains wrap around F-actin, while the C-terminal HEAT domain is displaced; furthermore, HTT dimerizes via the N-HEAT domain to bridge parallel actin filaments separated by ~20 nanometers. Our study provides the structural basis for understanding how HTT interacts with and organizes the actin cytoskeleton."}],"oa":1,"day":"19","OA_type":"gold","year":"2025","volume":11,"title":"Structure of the Huntingtin F-actin complex reveals its role in cytoskeleton organization","article_processing_charge":"Yes","article_type":"original","scopus_import":"1","ddc":["570"],"type":"journal_article","publication":"Science Advances","date_updated":"2026-02-16T11:45:54Z","PlanS_conform":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","isi":1,"OA_place":"publisher","DOAJ_listed":"1","external_id":{"isi":["001575751700013"],"pmid":["40971423"]},"author":[{"full_name":"Carpentier, Rémi","first_name":"Rémi","last_name":"Carpentier"},{"first_name":"Jaesung","last_name":"Kim","full_name":"Kim, Jaesung"},{"full_name":"Capizzi, Mariacristina","last_name":"Capizzi","first_name":"Mariacristina"},{"last_name":"Kim","first_name":"Hyeongju","full_name":"Kim, Hyeongju"},{"first_name":"Florian","last_name":"Fäßler","id":"404F5528-F248-11E8-B48F-1D18A9856A87","full_name":"Fäßler, Florian","orcid":"0000-0001-7149-769X"},{"full_name":"Hansen, Jesse","orcid":"0000-0001-7967-2085","id":"1063c618-6f9b-11ec-9123-f912fccded63","last_name":"Hansen","first_name":"Jesse"},{"first_name":"Min Jeong","last_name":"Kim","full_name":"Kim, Min Jeong"},{"first_name":"Eric","last_name":"Denarier","full_name":"Denarier, Eric"},{"first_name":"Béatrice","last_name":"Blot","full_name":"Blot, Béatrice"},{"full_name":"Degennaro, Marine","first_name":"Marine","last_name":"Degennaro"},{"full_name":"Labou, Sophia","first_name":"Sophia","last_name":"Labou"},{"last_name":"Arnal","first_name":"Isabelle","full_name":"Arnal, Isabelle"},{"first_name":"Maria J.","last_name":"Marcaida","full_name":"Marcaida, Maria J."},{"full_name":"Peraro, Matteo Dal","last_name":"Peraro","first_name":"Matteo Dal"},{"full_name":"Kim, Doory","last_name":"Kim","first_name":"Doory"},{"first_name":"Florian KM","last_name":"Schur","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","full_name":"Schur, Florian KM","orcid":"0000-0003-4790-8078"},{"first_name":"Ji-Joon","last_name":"Song","full_name":"Song, Ji-Joon"},{"first_name":"Sandrine","last_name":"Humbert","full_name":"Humbert, Sandrine"}],"pmid":1,"file":[{"checksum":"4e2407bdabf8d53f399eb8a20d86218e","file_size":3599137,"success":1,"file_name":"2025_ScienceAdvance_Carpentier.pdf","date_created":"2025-09-23T07:57:51Z","relation":"main_file","access_level":"open_access","creator":"dernst","content_type":"application/pdf","date_updated":"2025-09-23T07:57:51Z","file_id":"20372"}],"acknowledgement":"We thank C. Cuveillier, J. Delaroche, T. Ferraro, and A. Zanchi for help with TIRF experiments, electron microscopy preparation, data analysis, and cell cultures, respectively; A. Antkowiak, C. Bosc, C. Fassier, A. Fourest-Lieuvin, and V. Brandt for helpful discussions. We acknowledge the contribution of the Photonic Imaging Center of Grenoble Institute Neuroscience which is part of the ISdV core facility and certified by the IBiSA label and ICM.Quant (RRID:SCR_026393) core facility of the Paris Brain Institute (ICM); the AniRA lentivector production facility from the CELPHEDIA Infrastructure and SFR Biosciences (UAR3444/CNRS, US8/Inserm, ENS de Lyon, UCBL); the Scientific Service Units (SSUs) of ISTA through resources provided by Scientific Computing (SciComp, A. Schloegl and S. Elefante); and the Electron Microscopy Facility (EMF, V.V. Hodirnau). The software programs used for the processing were supported by SBGrid (www.sbgrid.org). This work was supported by the Agence Nationale pour la Recherche (AXYON: ANR-18-CE16-0009-01, S.H.), Austrian Science Fund (FWF) grants (P33367, F.K.M.S.; E435, J.M.H.), ChanZuckerberg Initiative (CZI) grant (DAF2021-234754, F.K.M.S.), Hereditary Disease Foundation Research Grant (HDF 990846, M.C.), European Union (ERC: ActinID 101076260, F.K.M.S.), Fondation pour la Recherche Médicale (FRM: équipe labellisée DEQ202203014675, S.H.; PhD fellowship, FDT202001010865, R.C.), Korea Health Industry Development Institute (KHIDI) (Korea-Switzerland global research support grant: RS-2023-00266300, J.-J.S.), National Research Foundation (NRF) of Korea (Korea-Austria collaborative grant NRF-2019K1A3A1A181160, J.-J.S. and F.K.M.S.; NRF-2020R1A2B5B03001517 and RS-2024-00333346 and RS-2024-00436173, J.-J.S.; 2021R1C1C1006700, D.K.).","has_accepted_license":"1","month":"09","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"department":[{"_id":"FlSc"}],"date_created":"2025-09-22T08:00:52Z","publisher":"AAAS","citation":{"chicago":"Carpentier, Rémi, Jaesung Kim, Mariacristina Capizzi, Hyeongju Kim, Florian Fäßler, Jesse Hansen, Min Jeong Kim, et al. “Structure of the Huntingtin F-Actin Complex Reveals Its Role in Cytoskeleton Organization.” Science Advances. AAAS, 2025. https://doi.org/10.1126/sciadv.adw4124.","short":"R. Carpentier, J. Kim, M. Capizzi, H. Kim, F. Fäßler, J. Hansen, M.J. Kim, E. Denarier, B. Blot, M. Degennaro, S. Labou, I. Arnal, M.J. Marcaida, M.D. Peraro, D. Kim, F.K. Schur, J.-J. Song, S. Humbert, Science Advances 11 (2025).","mla":"Carpentier, Rémi, et al. “Structure of the Huntingtin F-Actin Complex Reveals Its Role in Cytoskeleton Organization.” Science Advances, vol. 11, no. 38, eadw4124, AAAS, 2025, doi:10.1126/sciadv.adw4124.","ista":"Carpentier R, Kim J, Capizzi M, Kim H, Fäßler F, Hansen J, Kim MJ, Denarier E, Blot B, Degennaro M, Labou S, Arnal I, Marcaida MJ, Peraro MD, Kim D, Schur FK, Song J-J, Humbert S. 2025. Structure of the Huntingtin F-actin complex reveals its role in cytoskeleton organization. Science Advances. 11(38), eadw4124.","apa":"Carpentier, R., Kim, J., Capizzi, M., Kim, H., Fäßler, F., Hansen, J., … Humbert, S. (2025). 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Science Advances. 2025;11(38). doi:10.1126/sciadv.adw4124"},"_id":"20370","publication_identifier":{"issn":["2375-2548"]},"intvolume":" 11","issue":"38","project":[{"grant_number":"P33367","_id":"9B954C5C-BA93-11EA-9121-9846C619BF3A","name":"Structure and isoform diversity of the Arp2/3 complex"},{"grant_number":"E435","name":"In Situ Actin Structures via Hybrid Cryo-electron Microscopy","_id":"7bd318a1-9f16-11ee-852c-cc9217763180"},{"grant_number":"CZI01","name":"CryoMinflux-guided in-situ molecular census and structure determination","_id":"62909c6f-2b32-11ec-9570-e1476aab5308"},{"_id":"bd980d18-d553-11ed-ba76-ceaa645c97eb","name":"A molecular atlas of Actin filament IDentities in the cell motility machinery","grant_number":"101076260"}],"quality_controlled":"1","date_published":"2025-09-19T00:00:00Z"},{"department":[{"_id":"AlMi"}],"date_created":"2025-09-23T08:56:13Z","publisher":"Elsevier","citation":{"ieee":"D. Chakraborty et al., “Nucleosomes specify co-factor access to p53,” Molecular Cell, vol. 85, no. 15. Elsevier, p. 2919–2936.e12, 2025.","ama":"Chakraborty D, Sandate CR, Isbel L, et al. Nucleosomes specify co-factor access to p53. Molecular Cell. 2025;85(15):2919-2936.e12. doi:10.1016/j.molcel.2025.06.027","apa":"Chakraborty, D., Sandate, C. R., Isbel, L., Kempf, G., Weiss, J., Cavadini, S., … Thomä, N. H. (2025). Nucleosomes specify co-factor access to p53. Molecular Cell. Elsevier. https://doi.org/10.1016/j.molcel.2025.06.027","mla":"Chakraborty, Deyasini, et al. “Nucleosomes Specify Co-Factor Access to P53.” Molecular Cell, vol. 85, no. 15, Elsevier, 2025, p. 2919–2936.e12, doi:10.1016/j.molcel.2025.06.027.","short":"D. Chakraborty, C.R. Sandate, L. Isbel, G. Kempf, J. Weiss, S. Cavadini, L. Kater, J. Seebacher, Z. Kozicka, L. Stoos, R.S. Grand, D. Schübeler, A.K. Michael, N.H. Thomä, Molecular Cell 85 (2025) 2919–2936.e12.","ista":"Chakraborty D, Sandate CR, Isbel L, Kempf G, Weiss J, Cavadini S, Kater L, Seebacher J, Kozicka Z, Stoos L, Grand RS, Schübeler D, Michael AK, Thomä NH. 2025. Nucleosomes specify co-factor access to p53. Molecular Cell. 85(15), 2919–2936.e12.","chicago":"Chakraborty, Deyasini, Colby R. Sandate, Luke Isbel, Georg Kempf, Joscha Weiss, Simone Cavadini, Lukas Kater, et al. “Nucleosomes Specify Co-Factor Access to P53.” Molecular Cell. Elsevier, 2025. https://doi.org/10.1016/j.molcel.2025.06.027."},"month":"08","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":"2919-2936.e12","quality_controlled":"1","date_published":"2025-08-07T00:00:00Z","_id":"20374","issue":"15","publication_identifier":{"issn":["1097-2765"]},"intvolume":" 85","OA_place":"publisher","author":[{"full_name":"Chakraborty, Deyasini","first_name":"Deyasini","last_name":"Chakraborty"},{"full_name":"Sandate, Colby R.","last_name":"Sandate","first_name":"Colby R."},{"first_name":"Luke","last_name":"Isbel","full_name":"Isbel, Luke"},{"full_name":"Kempf, Georg","first_name":"Georg","last_name":"Kempf"},{"first_name":"Joscha","last_name":"Weiss","full_name":"Weiss, Joscha"},{"last_name":"Cavadini","first_name":"Simone","full_name":"Cavadini, Simone"},{"full_name":"Kater, Lukas","last_name":"Kater","first_name":"Lukas"},{"full_name":"Seebacher, Jan","first_name":"Jan","last_name":"Seebacher"},{"last_name":"Kozicka","first_name":"Zuzanna","full_name":"Kozicka, Zuzanna"},{"full_name":"Stoos, Lisa","first_name":"Lisa","last_name":"Stoos"},{"full_name":"Grand, Ralph S.","last_name":"Grand","first_name":"Ralph S."},{"first_name":"Dirk","last_name":"Schübeler","full_name":"Schübeler, Dirk"},{"id":"6437c950-2a03-11ee-914d-d6476dd7b75c","full_name":"Michael, Alicia","orcid":"0000-0002-6080-839X","first_name":"Alicia","last_name":"Michael"},{"last_name":"Thomä","first_name":"Nicolas H.","full_name":"Thomä, Nicolas H."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"content_type":"application/pdf","creator":"dernst","date_updated":"2025-09-24T07:54:03Z","file_id":"20386","file_name":"2025_MolecularCell_Chakraborty.pdf","success":1,"checksum":"e60390ca629b350af3221d4718ca6534","file_size":41813494,"access_level":"open_access","relation":"main_file","date_created":"2025-09-24T07:54:03Z"}],"has_accepted_license":"1","acknowledgement":"We thank M. Schütz for laboratory management, organization, and assistance with manuscript editing. We are grateful to all Thomä and Schübeler lab members. We thank Ulrich Hassiepen from Novartis for his support and insightful discussions on the kinetic analysis. This work was supported by funding from the European Research Council (ERC), under the European Union’s H2020 research program (NucEM, grant no. 884331); the Swiss National Science Foundation (SNF, grant no. 310030_301206 and 310030_214852); Krebsforschung (KFS, grant no. KFS-5933-08-2023); Novartis Research Foundation (to N.H.T.); the Novartis Freenovation (grant no. FN23-0000000514 to C.R.S.); the National Health and Medical Research Council CJ Martin Fellowship (APP1148380); the EU Horizon 2020 Research and Innovation Program under the Marie Sklodowska-Curie grant (grant no. 748760); the South Australian immunoGENomics Cancer Institute grant funding from the Australian Government; and the Sylvia and Charles Viertel Charitable Foundation Senior Medical Research Fellowship (to L.I.).","article_processing_charge":"Yes (in subscription journal)","article_type":"original","publication":"Molecular Cell","type":"journal_article","PlanS_conform":"1","date_updated":"2025-09-24T08:21:55Z","scopus_import":"1","ddc":["570"],"file_date_updated":"2025-09-24T07:54:03Z","doi":"10.1016/j.molcel.2025.06.027","publication_status":"published","oa":1,"OA_type":"hybrid","day":"07","year":"2025","volume":85,"title":"Nucleosomes specify co-factor access to p53","language":[{"iso":"eng"}],"abstract":[{"text":"Pioneer transcription factors (TFs) engage chromatinized DNA motifs. However, it is unclear how the resultant TF-nucleosome complexes are decoded by co-factors. In humans, the TF p53 regulates cell-cycle progression, apoptosis, and the DNA damage response, with a large fraction of p53-bound sites residing in nucleosome-harboring inaccessible chromatin. We examined the interaction of chromatin-bound p53 with co-factors belonging to the ubiquitin proteasome system (UPS). At two distinct motif locations on the nucleosome (super-helical location [SHL]−5.7 and SHL+5.9), the E3 ubiquitin ligase E6-E6AP was unable to bind nucleosome-engaged p53. The deubiquitinase USP7, on the other hand, readily engages nucleosome-bound p53 in vitro and in cells. A corresponding cryo-electron microscopy (cryo-EM) structure shows USP7 engaged with p53 and nucleosomes. Our work illustrates how chromatin imposes a co-factor-selective barrier for p53 interactors, whereby flexibly tethered interaction domains of co-factors and TFs govern compatibility between co-factors, TFs, and chromatin.","lang":"eng"}]},{"article_processing_charge":"Yes","article_type":"original","scopus_import":"1","ddc":["532"],"publication":"Nature Communications","type":"journal_article","date_updated":"2025-12-01T12:40:27Z","PlanS_conform":"1","doi":"10.1038/s41467-025-63044-7","publication_status":"published","file_date_updated":"2025-09-27T13:32:03Z","article_number":"8447","language":[{"iso":"eng"}],"abstract":[{"text":"The recent classification of the onset of turbulence as a directed percolation (DP) phase transition has been applied to all major shear flows including pipe, channel, Couette and boundary layer flows. A cornerstone of the DP analogy is the memoryless (Poisson) property of turbulent sites. We here show that, for the classic case of channel flow, neither the decay nor the proliferation of turbulent stripes is memoryless. As demonstrated by a standard analysis of the respective survival curves, isolated channel stripes, in the immediate vicinity of the critical point, age. Consequently, the one to one mapping between turbulent stripes and active DP-sites is not fulfilled in this low Reynolds number regime. In addition, the interpretation of turbulence as a chaotic saddle with supertransient properties, the basis of recent theoretical progress, does not apply to individual localized stripes. The discrepancy between channel flow and the transition models established for pipe and Couette flow, illustrates that seemingly minor geometrical differences between flows can give rise to instabilities and growth mechanisms that fundamentally alter the nature of the transition to turbulence.","lang":"eng"}],"corr_author":"1","oa":1,"day":"26","OA_type":"gold","year":"2025","volume":16,"title":"Aging and memory of transitional turbulence","month":"09","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_created":"2025-09-27T13:27:31Z","department":[{"_id":"BjHo"}],"citation":{"ista":"Vasudevan M, Paranjape CS, Sitte MP, Yalniz G, Hof B. 2025. Aging and memory of transitional turbulence. Nature Communications. 16, 8447.","short":"M. Vasudevan, C.S. Paranjape, M.P. Sitte, G. Yalniz, B. Hof, Nature Communications 16 (2025).","mla":"Vasudevan, Mukund, et al. “Aging and Memory of Transitional Turbulence.” Nature Communications, vol. 16, 8447, Springer Nature, 2025, doi:10.1038/s41467-025-63044-7.","chicago":"Vasudevan, Mukund, Chaitanya S Paranjape, Michael Philip Sitte, Gökhan Yalniz, and Björn Hof. “Aging and Memory of Transitional Turbulence.” Nature Communications. Springer Nature, 2025. https://doi.org/10.1038/s41467-025-63044-7.","ieee":"M. Vasudevan, C. S. Paranjape, M. P. Sitte, G. Yalniz, and B. Hof, “Aging and memory of transitional turbulence,” Nature Communications, vol. 16. Springer Nature, 2025.","apa":"Vasudevan, M., Paranjape, C. S., Sitte, M. P., Yalniz, G., & Hof, B. (2025). Aging and memory of transitional turbulence. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-025-63044-7","ama":"Vasudevan M, Paranjape CS, Sitte MP, Yalniz G, Hof B. Aging and memory of transitional turbulence. Nature Communications. 2025;16. doi:10.1038/s41467-025-63044-7"},"publisher":"Springer Nature","_id":"20402","publication_identifier":{"eissn":["2041-1723"]},"intvolume":" 16","project":[{"_id":"238598C6-32DE-11EA-91FC-C7463DDC885E","name":"Revisiting the Turbulence Problem Using Statistical Mechanics","grant_number":"662960"}],"quality_controlled":"1","date_published":"2025-09-26T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","OA_place":"publisher","isi":1,"arxiv":1,"DOAJ_listed":"1","external_id":{"isi":["001582555200041"],"arxiv":["2112.06537"]},"author":[{"first_name":"Mukund","last_name":"Vasudevan","full_name":"Vasudevan, Mukund","id":"3C5A959A-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Paranjape","first_name":"Chaitanya S","id":"3D85B7C4-F248-11E8-B48F-1D18A9856A87","full_name":"Paranjape, Chaitanya S"},{"first_name":"Michael Philip","last_name":"Sitte","id":"0ba0f1f2-9cfe-11f0-bee6-f95318d225b0","full_name":"Sitte, Michael Philip"},{"id":"66E74FA2-D8BF-11E9-8249-8DE2E5697425","full_name":"Yalniz, Gökhan","orcid":"0000-0002-8490-9312","last_name":"Yalniz","first_name":"Gökhan"},{"id":"3A374330-F248-11E8-B48F-1D18A9856A87","full_name":"Hof, Björn","orcid":"0000-0003-2057-2754","last_name":"Hof","first_name":"Björn"}],"file":[{"date_updated":"2025-09-27T13:32:03Z","file_id":"20403","content_type":"application/pdf","creator":"gyalniz","access_level":"open_access","relation":"main_file","date_created":"2025-09-27T13:32:03Z","file_name":"s41467-025-63044-7.pdf","checksum":"945926ead9cde464435d456427e2869e","file_size":2226082}],"acknowledgement":"This work was supported by a grant from the Simons Foundation (662960, BH). We thank Yohann Duguet for helpful discussions, Baofang Song for the initial adaptation of openpipeflow57 to the channel geometry, and Ashley P. Willis for openpipeflow57.","has_accepted_license":"1"}]